Query 017168
Match_columns 376
No_of_seqs 160 out of 1181
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 3.3E-35 7.2E-40 295.7 24.5 326 22-360 112-454 (472)
2 KOG1338 Uncharacterized conser 100.0 4.6E-28 9.9E-33 226.0 17.2 209 16-239 85-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 2.6E-19 5.6E-24 149.0 13.5 122 221-345 1-128 (128)
4 PF00856 SET: SET domain; Int 98.9 2.5E-09 5.4E-14 91.0 7.6 48 144-192 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.7 2.8E-05 6.1E-10 62.4 3.8 46 145-191 67-116 (116)
6 KOG2589 Histone tail methylase 91.2 0.16 3.5E-06 48.6 2.8 54 146-211 192-246 (453)
7 KOG1085 Predicted methyltransf 91.1 0.22 4.7E-06 46.2 3.4 32 170-201 355-386 (392)
8 KOG1079 Transcriptional repres 79.8 1.6 3.4E-05 45.3 3.1 36 158-193 671-710 (739)
9 KOG1080 Histone H3 (Lys4) meth 76.9 2.6 5.5E-05 46.5 3.8 42 151-192 939-983 (1005)
10 KOG4442 Clathrin coat binding 69.1 4.9 0.00011 41.9 3.5 40 153-193 195-238 (729)
11 COG2940 Proteins containing SE 58.4 5.7 0.00012 40.5 1.7 40 154-194 408-451 (480)
12 KOG1338 Uncharacterized conser 46.7 2.8 6.1E-05 40.9 -2.4 75 145-222 269-347 (466)
13 KOG1083 Putative transcription 45.2 27 0.00059 38.5 4.2 29 166-194 1267-1296(1306)
14 KOG2461 Transcription factor B 40.2 26 0.00055 34.8 3.0 35 170-204 121-155 (396)
15 TIGR02059 swm_rep_I cyanobacte 37.6 47 0.001 26.1 3.5 29 166-194 70-98 (101)
16 KOG3429 Predicted peptidyl-tRN 32.9 1.6E+02 0.0034 25.4 6.1 52 292-348 111-163 (172)
17 PF15188 CCDC-167: Coiled-coil 29.4 82 0.0018 24.0 3.6 43 315-360 21-63 (85)
18 KOG2227 Pre-initiation complex 22.6 3.3E+02 0.0071 27.9 7.2 68 299-373 329-400 (529)
19 KOG1082 Histone H3 (Lys9) meth 20.3 83 0.0018 30.8 2.7 25 172-196 300-324 (364)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=295.72 Aligned_cols=326 Identities=34% Similarity=0.431 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHhhcccccCCCccccCCCCCCCHhhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 017168 22 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM 101 (376)
Q Consensus 22 ~~Lal~Ll~E~~~~~~S~w~pYl~~LP~~~~~~~~~~~~p~~w~~~el~~L~gs~l~~~~~~~~~~~~~~y~~~~~~~~~ 101 (376)
.++++++++++..+..|.|++|+.+||. .+++|++|..+++..|.+++....+..+...++..+..+..++..
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS 184 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence 7899999999998888999999999999 579999999999999999999999998888888877666654332
Q ss_pred hccccccCCCCCCCCCcchhhHHHHHHhhccceeecccc------ccccceeeeecCCCccCCCCcCceeEeeeCCeEEE
Q 017168 102 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQL 175 (376)
Q Consensus 102 ~~~~~~~~~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~------~~~~~~~LvP~~D~lNhh~~~~~~~~~~~~~~~~~ 175 (376)
....+.... .+.+|++.|.||+++|.||+|+.+.. ......+|+|++||+||......+.++..++.+.+
T Consensus 185 ~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l 260 (472)
T KOG1337|consen 185 HPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVEL 260 (472)
T ss_pred ccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEE
Confidence 222222221 23389999999999999999997633 12346899999999986444446677777789999
Q ss_pred EEeccCCCCCeEEcccCCCChHhHhhhcCcccCCCCCCeEEEEeecCCCCccHHHHHHHHHHcCCccceEEEEeeCCccc
Q 017168 176 VVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKE 255 (376)
Q Consensus 176 ~a~~~i~~Geei~~~YG~~~N~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~ 255 (376)
++.++|++||||||+||+++|++||++||||.++||+|.|.+.+.+...++.+..|.+.+..++......|.+...+.+.
T Consensus 261 ~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (472)
T KOG1337|consen 261 VAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV 340 (472)
T ss_pred EEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999998877788877776432
Q ss_pred hhhhhhhHhHhhcC---CChHHHHHHHH----h---cCCCCCCCHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHhhcc
Q 017168 256 AISDMLPYLRLGYV---SDTSEMQSVIS----S---LGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLTD 324 (376)
Q Consensus 256 ~~~~ll~~lRv~~~---~~~~el~~~~~----~---~~~~~~~s~~~E~~~~~~L~~~-l~~~L~~y~ttieeD~~~L~~ 324 (376)
.+++...++..+ ..+.++..... . .....+++..+|...+..+... +...+..+.+++++++..+.+
T Consensus 341 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~ 418 (472)
T KOG1337|consen 341 --SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKD 418 (472)
T ss_pred --hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcc
Confidence 222222222222 22212222111 1 1235677889999999999998 888889999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017168 325 YNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP 360 (376)
Q Consensus 325 ~~ls~r~~~A~~~R~~eK~iL~~~l~~l~~~~~~l~ 360 (376)
..++....++..++..+|+||.+++..+....+.+.
T Consensus 419 ~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~ 454 (472)
T KOG1337|consen 419 NILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLLH 454 (472)
T ss_pred cccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence 888889999999999999999999999986666664
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=4.6e-28 Score=225.95 Aligned_cols=209 Identities=21% Similarity=0.272 Sum_probs=167.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCChhhHhhcccccCCCccccCCCCCCCHhhhhcccCCchHHHHHHHHHHHHHHHHHH
Q 017168 16 NKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 95 (376)
Q Consensus 16 ~~l~~~~~Lal~Ll~E~~~~~~S~w~pYl~~LP~~~~~~~~~~~~p~~w~~~el~~L~gs~l~~~~~~~~~~~~~~y~~~ 95 (376)
++.+.|.+|++.|++|..-+.+|+|+||++.+|++. .+++|+||+++|+..|..+.+.++..+.++.|+++|..+
T Consensus 85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~ 159 (466)
T KOG1338|consen 85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFV 159 (466)
T ss_pred hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHH
Confidence 458999999999999996555599999999999997 789999999999997765666676889999999999887
Q ss_pred HHHHHhhccccccCCCCCCCCCcchhhHHHHHHhhccceeecccc-----------ccccceeeeecCCCccCCCCcCce
Q 017168 96 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSKCKA 164 (376)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~-----------~~~~~~~LvP~~D~lNhh~~~~~~ 164 (376)
... +.+.||..|. .+++++|..+++++.+-+|.+.-. ....+.+|+|.+||+||.+..+|+
T Consensus 160 i~p------f~~~~p~vfs--~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na 231 (466)
T KOG1338|consen 160 IQP------FKQHCPIVFS--RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA 231 (466)
T ss_pred HHH------HHHhCcchhc--ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc
Confidence 763 4455665443 489999999999999999976411 123468999999999987788999
Q ss_pred eEeeeCCeEEEEEeccCCCCCeEEcccCCCChHhHhhhcCcccCCCC---------CCeEEEEeecCCCCccHHHHHHHH
Q 017168 165 MLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNP---------YDRLVVEAALNTEDPQYQDKRMVA 235 (376)
Q Consensus 165 ~~~~~~~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~~YGFv~~~Np---------~D~v~l~~~~~~~d~~~~~k~~lL 235 (376)
...++++|+.|+|+|+|.+|+||+++||.++|. |++||.+.-... +|.+.+-.+++.+++.+..|.-++
T Consensus 232 nl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ 309 (466)
T KOG1338|consen 232 NLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILL 309 (466)
T ss_pred ceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999988 888888765433 233333345566777777665544
Q ss_pred HHcC
Q 017168 236 QRNG 239 (376)
Q Consensus 236 ~~~g 239 (376)
.-++
T Consensus 310 ql~n 313 (466)
T KOG1338|consen 310 QLHN 313 (466)
T ss_pred Hhcc
Confidence 4444
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.81 E-value=2.6e-19 Score=149.02 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=105.1
Q ss_pred cCCCCccHHHHHHHHHHcCCccceEEEEeeCCccchhhhhhhHhHhhcCCChHHHHHHHHhcC------CCCCCCHHHHH
Q 017168 221 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 294 (376)
Q Consensus 221 ~~~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~~~~~ll~~lRv~~~~~~~el~~~~~~~~------~~~~~s~~~E~ 294 (376)
++++||+++.|.++|+.+|+.....|.++.++. +++++++++||++|+ ++++..+..... ...++|..||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 357899999999999999999877899998875 689999999999995 788877665432 24688999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 017168 295 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 345 (376)
Q Consensus 295 ~~~~~L~~~l~~~L~~y~ttieeD~~~L~~~~ls~r~~~A~~~R~~eK~iL 345 (376)
+++++|...|..+|+.|+||+++|+++|++...+.+.++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999877788999999999999997
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=98.93 E-value=2.5e-09 Score=90.97 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=38.5
Q ss_pred cceeeeecCCCccCCCCcCceeEee----eCCeEEEEEeccCCCCCeEEcccC
Q 017168 144 RRFALVPLGPPLLAYSSKCKAMLAA----VDDAVQLVVDRPYKAGESIVVWCG 192 (376)
Q Consensus 144 ~~~~LvP~~D~lNhh~~~~~~~~~~----~~~~~~~~a~~~i~~Geei~~~YG 192 (376)
...+|+|++||+||.+ .+|+.+.. +++++.++|.|+|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc-~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSC-DPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEES-STSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHhecccc-ccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 4689999999999754 44555444 488999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.74 E-value=2.8e-05 Score=62.41 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=35.8
Q ss_pred ceeeeecCCCccCCCCcCceeEe--eeCC--eEEEEEeccCCCCCeEEccc
Q 017168 145 RFALVPLGPPLLAYSSKCKAMLA--AVDD--AVQLVVDRPYKAGESIVVWC 191 (376)
Q Consensus 145 ~~~LvP~~D~lNhh~~~~~~~~~--~~~~--~~~~~a~~~i~~Geei~~~Y 191 (376)
...+.|+++++|| +..+|+.+. ..++ .+.++|.|+|++||||+++|
T Consensus 67 ~~~~~~~~~~iNH-sc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINH-SCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCC-CCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3458999999986 545665543 3333 59999999999999999998
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=91.21 E-value=0.16 Score=48.56 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=42.4
Q ss_pred eeeeecCCCccCCCCcCceeEeeeC-CeEEEEEeccCCCCCeEEcccCCCChHhHhhhcCcccCCCC
Q 017168 146 FALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNP 211 (376)
Q Consensus 146 ~~LvP~~D~lNhh~~~~~~~~~~~~-~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~~YGFv~~~Np 211 (376)
..|=|-+ ++| |+-.+|+.|...+ +...+++.|||++||||..-||. ||--++|.
T Consensus 192 LwLGPaa-fIN-HDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~ 246 (453)
T KOG2589|consen 192 LWLGPAA-FIN-HDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNE 246 (453)
T ss_pred heeccHH-hhc-CCCCCCceeecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCc
Confidence 4577777 477 4666777777766 79999999999999999999997 56556665
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=91.12 E-value=0.22 Score=46.19 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCeEEEEEeccCCCCCeEEcccCCCChHhHhh
Q 017168 170 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 201 (376)
Q Consensus 170 ~~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~ 201 (376)
...++++|.++|.+|||+...||.+|-.-++.
T Consensus 355 ~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 355 SPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred CceEEEEeccccccchhhhhhccccchhHHhh
Confidence 35799999999999999999999988776543
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=79.81 E-value=1.6 Score=45.26 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCcCcee----EeeeCCeEEEEEeccCCCCCeEEcccCC
Q 017168 158 YSSKCKAM----LAAVDDAVQLVVDRPYKAGESIVVWCGP 193 (376)
Q Consensus 158 h~~~~~~~----~~~~~~~~~~~a~~~i~~Geei~~~YG~ 193 (376)
|+.++|.. +-..+..+-|.|.|.|.+|||+|..|+=
T Consensus 671 HS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 671 HSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred CCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 56555532 2345678889999999999999999964
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=76.86 E-value=2.6 Score=46.46 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred cCCCccCCC-CcCceeEeeeC--CeEEEEEeccCCCCCeEEcccC
Q 017168 151 LGPPLLAYS-SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 192 (376)
Q Consensus 151 ~~D~lNhh~-~~~~~~~~~~~--~~~~~~a~~~i~~Geei~~~YG 192 (376)
++=++||.+ ++|.+.+-..+ ..++|.|.|+|.+||||+..|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 344677644 45777655433 4799999999999999998884
No 10
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.11 E-value=4.9 Score=41.95 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=28.0
Q ss_pred CCccCCCCcCcee---EeeeC-CeEEEEEeccCCCCCeEEcccCC
Q 017168 153 PPLLAYSSKCKAM---LAAVD-DAVQLVVDRPYKAGESIVVWCGP 193 (376)
Q Consensus 153 D~lNhh~~~~~~~---~~~~~-~~~~~~a~~~i~~Geei~~~YG~ 193 (376)
=++|| +-.+|+. |...+ -.+-|.+.|.|++||||+..|+-
T Consensus 195 RFiNH-SC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 195 RFINH-SCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HhhcC-CCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 35665 5445543 44333 46778899999999999998874
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=58.39 E-value=5.7 Score=40.53 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=28.1
Q ss_pred CccCCCCcCceeEe--eeCC--eEEEEEeccCCCCCeEEcccCCC
Q 017168 154 PLLAYSSKCKAMLA--AVDD--AVQLVVDRPYKAGESIVVWCGPQ 194 (376)
Q Consensus 154 ~lNhh~~~~~~~~~--~~~~--~~~~~a~~~i~~Geei~~~YG~~ 194 (376)
++|| +..+|.... ...| .+.+.+.++|++||||...||..
T Consensus 408 ~~nH-S~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 408 FINH-SCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred eeec-CCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 5664 544444332 2333 77788999999999999999873
No 12
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.75 E-value=2.8 Score=40.86 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=55.2
Q ss_pred ceeeeecCCCccCCCCcCcee--EeeeCCeEEEEEeccCCCCCeEEcccCCCChHhHhhhcC-cccCC-CCCCeEEEEee
Q 017168 145 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDED-NPYDRLVVEAA 220 (376)
Q Consensus 145 ~~~LvP~~D~lNhh~~~~~~~--~~~~~~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~~YG-Fv~~~-Np~D~v~l~~~ 220 (376)
+.++.|+.+|++....-+|.. .-...+..++++.|.+ |.|..++||...+.++...|| |+-.. -|++.+.+ +.
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv-~g 345 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV-IG 345 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-ee
Confidence 578999999987433333422 2234567788888988 999999999999999999999 55544 68887766 34
Q ss_pred cC
Q 017168 221 LN 222 (376)
Q Consensus 221 ~~ 222 (376)
++
T Consensus 346 lp 347 (466)
T KOG1338|consen 346 LP 347 (466)
T ss_pred ch
Confidence 44
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=45.21 E-value=27 Score=38.49 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.7
Q ss_pred EeeeCC-eEEEEEeccCCCCCeEEcccCCC
Q 017168 166 LAAVDD-AVQLVVDRPYKAGESIVVWCGPQ 194 (376)
Q Consensus 166 ~~~~~~-~~~~~a~~~i~~Geei~~~YG~~ 194 (376)
|...+. .+.+.|.|||.+||||+..|..+
T Consensus 1267 wSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1267 WSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ccccceeeeeeeecCCCCCCceEEEecccc
Confidence 444332 57888999999999999999654
No 14
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=40.17 E-value=26 Score=34.84 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.1
Q ss_pred CCeEEEEEeccCCCCCeEEcccCCCChHhHhhhcC
Q 017168 170 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 204 (376)
Q Consensus 170 ~~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~~YG 204 (376)
.+.+-+++.|+|.+|||+.+.||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46788999999999999999999988888777777
No 15
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=37.59 E-value=47 Score=26.09 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=23.9
Q ss_pred EeeeCCeEEEEEeccCCCCCeEEcccCCC
Q 017168 166 LAAVDDAVQLVVDRPYKAGESIVVWCGPQ 194 (376)
Q Consensus 166 ~~~~~~~~~~~a~~~i~~Geei~~~YG~~ 194 (376)
++...+.+.+.-.+.|..||+|.++|-.-
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeCC
Confidence 34445689999999999999999999553
No 16
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=32.87 E-value=1.6e+02 Score=25.39 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CChHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 017168 292 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 348 (376)
Q Consensus 292 ~E~~~~~~L~~~l~~~L~~y~-ttieeD~~~L~~~~ls~r~~~A~~~R~~eK~iL~~~ 348 (376)
|-..+++-|.+++.+.-+.-+ .+-+||.+.+.. +..-|.+=|+.||++...-
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~r~-----~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKIRI-----RKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHhhhHH
Confidence 445678888888888776544 455777765543 7788899999999987654
No 17
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.37 E-value=82 Score=24.02 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=28.8
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017168 315 LSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP 360 (376)
Q Consensus 315 ieeD~~~L~~~~ls~r~~~A~~~R~~eK~iL~~~l~~l~~~~~~l~ 360 (376)
++.-+.-|....+|+..|-.+. .|+..|...+..-++.++.|+
T Consensus 21 le~ve~rL~~~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 21 LEAVESRLRRRELSPEARRSLE---KELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHHHHcccCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHH
Confidence 4555556666667765444444 778888888888888877765
No 18
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.61 E-value=3.3e+02 Score=27.89 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHh--hcc--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 017168 299 QLADYFKARLAGYPATLSEDEAM--LTD--YNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAP 373 (376)
Q Consensus 299 ~L~~~l~~~L~~y~ttieeD~~~--L~~--~~ls~r~~~A~~~R~~eK~iL~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 373 (376)
.+..++.++|.+-+|++..+.++ ... ...|-..|-|+ .|.+.+++.++..-+.+.++.+.||..|..+
T Consensus 329 qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL-------dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~ 400 (529)
T KOG2227|consen 329 QIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL-------DVCRRAIEIAEIEKRKILDDPLSPGTSPEKK 400 (529)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH-------HHHHHHHHHHHHHHhhccccCCCCCCCcccc
Confidence 47788899999999988777321 111 12344445544 3566778888888888889999999999875
No 19
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=20.26 E-value=83 Score=30.83 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.5
Q ss_pred eEEEEEeccCCCCCeEEcccCCCCh
Q 017168 172 AVQLVVDRPYKAGESIVVWCGPQPN 196 (376)
Q Consensus 172 ~~~~~a~~~i~~Geei~~~YG~~~N 196 (376)
.+.+.|.++|.+|+|+...||..-+
T Consensus 300 ~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 300 RIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred eeeeeeccccCCCcccchhhccccc
Confidence 5778899999999999999997533
Done!