Query 017169
Match_columns 376
No_of_seqs 244 out of 555
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 2.8E-52 9.5E-57 380.5 16.5 171 52-223 6-179 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 7.7E-43 2.6E-47 323.4 16.0 169 51-219 35-207 (219)
3 2jvz_A KH type-splicing, FAR u 99.0 1.5E-09 5E-14 93.0 9.4 137 51-204 3-160 (164)
4 1j4w_A FUSE binding protein; s 98.9 5.4E-09 1.9E-13 91.1 10.1 140 49-202 2-174 (174)
5 2anr_A Neuro-oncological ventr 98.9 9.5E-09 3.3E-13 89.7 11.4 144 48-204 4-175 (178)
6 3krm_A Insulin-like growth fac 98.9 1.6E-08 5.5E-13 86.9 11.0 136 48-204 1-156 (163)
7 2jzx_A Poly(RC)-binding protei 98.7 2.3E-07 7.8E-12 79.5 12.0 137 50-203 5-158 (160)
8 1dtj_A RNA-binding neurooncolo 98.4 1.8E-07 6.1E-12 71.8 4.3 52 152-203 13-74 (76)
9 1ec6_A RNA-binding protein NOV 98.3 2.9E-07 9.9E-12 72.8 4.0 53 152-204 13-75 (87)
10 2opv_A KHSRP protein; KH domai 98.3 4E-07 1.4E-11 71.9 4.2 52 152-203 24-84 (85)
11 1x4n_A FAR upstream element bi 98.3 5.8E-07 2E-11 72.1 4.5 53 152-204 25-84 (92)
12 2ctm_A Vigilin; K homology typ 98.3 6.2E-07 2.1E-11 72.9 4.4 52 152-203 27-84 (95)
13 2hh2_A KH-type splicing regula 98.3 1.1E-06 3.8E-11 72.5 5.9 56 152-207 17-82 (107)
14 2p2r_A Poly(RC)-binding protei 98.2 5.7E-07 1.9E-11 69.4 3.7 52 152-203 15-73 (76)
15 1k1g_A SF1-BO isoform; splicin 98.2 3.7E-07 1.3E-11 78.6 2.9 71 152-222 23-119 (131)
16 1x4m_A FAR upstream element bi 98.2 1.9E-06 6.5E-11 69.4 5.9 53 152-204 25-86 (94)
17 2bl5_A MGC83862 protein, quaki 98.2 1.8E-06 6.3E-11 75.6 6.2 82 152-234 18-131 (140)
18 1zzk_A Heterogeneous nuclear r 98.2 1.4E-06 4.6E-11 68.4 4.8 52 152-203 17-75 (82)
19 1vig_A Vigilin; RNA-binding pr 98.2 1.3E-06 4.5E-11 67.1 4.4 51 152-202 15-70 (71)
20 1we8_A Tudor and KH domain con 98.1 1.2E-06 4E-11 71.8 3.7 53 152-204 25-86 (104)
21 2yqr_A KIAA0907 protein; struc 98.1 1.7E-06 5.7E-11 73.8 4.2 56 152-208 29-102 (119)
22 2qnd_A FMR1 protein; KH domain 98.1 1.2E-05 4E-10 69.4 9.5 121 53-204 7-142 (144)
23 1j5k_A Heterogeneous nuclear r 98.1 1.4E-06 4.9E-11 69.3 3.4 52 152-203 24-82 (89)
24 1wvn_A Poly(RC)-binding protei 98.1 2.2E-06 7.4E-11 67.1 4.1 53 152-204 16-75 (82)
25 2ctk_A Vigilin; K homology typ 98.1 2.2E-06 7.5E-11 70.7 4.0 53 152-204 27-84 (104)
26 2ctl_A Vigilin; K homology typ 98.0 3.9E-06 1.3E-10 68.3 4.4 62 133-203 17-86 (97)
27 2hh3_A KH-type splicing regula 98.0 3.9E-06 1.3E-10 69.6 4.4 53 152-204 21-80 (106)
28 2axy_A Poly(RC)-binding protei 98.0 4.3E-06 1.5E-10 64.4 3.8 53 151-203 14-71 (73)
29 2cte_A Vigilin; K homology typ 97.9 4.6E-06 1.6E-10 67.2 2.8 52 152-203 27-83 (94)
30 2dgr_A Ring finger and KH doma 97.9 1.9E-05 6.6E-10 62.9 5.8 52 152-203 20-75 (83)
31 2jvz_A KH type-splicing, FAR u 97.6 4.6E-05 1.6E-09 65.0 4.2 53 152-204 12-73 (164)
32 2jzx_A Poly(RC)-binding protei 97.5 4.2E-05 1.5E-09 65.3 3.5 52 152-203 15-71 (160)
33 1j4w_A FUSE binding protein; s 97.4 9E-05 3.1E-09 64.4 3.9 53 152-204 13-72 (174)
34 2anr_A Neuro-oncological ventr 97.4 0.00012 4.1E-09 63.7 4.6 57 151-207 15-81 (178)
35 2ctj_A Vigilin; K homology typ 97.3 0.00018 6.1E-09 58.6 4.2 65 130-203 14-84 (95)
36 3krm_A Insulin-like growth fac 97.3 0.00015 5.1E-09 62.1 3.8 53 152-204 13-73 (163)
37 2cpq_A FragIle X mental retard 96.9 0.00027 9.3E-09 57.8 1.5 50 152-201 25-78 (91)
38 2ctf_A Vigilin; K homology typ 96.6 0.0015 5.1E-08 53.7 4.1 52 152-203 37-91 (102)
39 3u1k_A Polyribonucleotide nucl 96.3 0.0014 4.8E-08 69.0 2.5 51 152-202 577-629 (630)
40 2e3u_A PH-DIM2P, hypothetical 95.6 0.01 3.4E-07 55.0 4.7 54 152-205 44-104 (219)
41 3n89_A Defective in GERM LINE 95.1 0.0083 2.8E-07 59.9 2.5 51 152-202 40-104 (376)
42 3n89_A Defective in GERM LINE 94.1 0.031 1.1E-06 55.8 3.9 50 153-202 197-259 (376)
43 4aid_A Polyribonucleotide nucl 92.2 0.023 7.7E-07 61.0 -0.4 53 152-204 580-634 (726)
44 3v69_A Protein filia; RNA-bind 91.8 0.13 4.5E-06 45.2 4.0 63 152-220 66-134 (140)
45 1tua_A Hypothetical protein AP 91.6 0.12 3.9E-06 47.1 3.5 53 152-204 14-73 (191)
46 2opv_A KHSRP protein; KH domai 89.6 1.5 5.1E-05 34.0 7.9 62 50-117 14-84 (85)
47 3gku_A Probable RNA-binding pr 89.5 0.087 3E-06 49.2 0.8 79 153-231 103-195 (225)
48 2cpq_A FragIle X mental retard 88.3 0.43 1.5E-05 38.9 4.0 70 50-123 15-86 (91)
49 1dtj_A RNA-binding neurooncolo 86.2 1.3 4.3E-05 33.3 5.4 62 50-116 3-73 (76)
50 2cte_A Vigilin; K homology typ 84.3 1.1 3.9E-05 35.5 4.5 63 49-116 16-82 (94)
51 2p2r_A Poly(RC)-binding protei 80.6 3.7 0.00013 30.9 5.9 63 50-117 5-73 (76)
52 1ec6_A RNA-binding protein NOV 80.2 3.5 0.00012 31.9 5.8 62 51-117 4-74 (87)
53 1we8_A Tudor and KH domain con 80.0 2.4 8.1E-05 34.2 4.9 64 50-118 15-86 (104)
54 1wvn_A Poly(RC)-binding protei 79.9 4.2 0.00014 31.1 6.1 63 50-117 6-74 (82)
55 1j5k_A Heterogeneous nuclear r 77.3 4 0.00014 31.9 5.4 65 48-117 12-82 (89)
56 2hh3_A KH-type splicing regula 75.9 6.4 0.00022 32.1 6.4 64 49-117 10-79 (106)
57 1x4m_A FAR upstream element bi 74.9 3.3 0.00011 32.7 4.4 67 48-119 13-87 (94)
58 1zzk_A Heterogeneous nuclear r 71.1 7 0.00024 29.9 5.3 64 48-116 5-74 (82)
59 3u1k_A Polyribonucleotide nucl 70.0 4.6 0.00016 42.7 5.2 59 53-116 570-629 (630)
60 1x4n_A FAR upstream element bi 69.9 5.9 0.0002 31.1 4.7 63 50-117 15-83 (92)
61 2hh2_A KH-type splicing regula 68.9 5.1 0.00018 32.5 4.3 64 50-118 7-79 (107)
62 2qnd_A FMR1 protein; KH domain 66.9 1.9 6.6E-05 36.7 1.4 46 151-196 13-62 (144)
63 2pt7_G HP1451, hypothetical pr 66.4 1.7 5.7E-05 38.3 0.9 88 105-202 4-101 (152)
64 1vig_A Vigilin; RNA-binding pr 65.7 11 0.00036 28.3 5.2 61 49-115 4-69 (71)
65 4e9j_A General secretion pathw 65.7 11 0.00036 34.4 6.2 113 68-202 31-171 (246)
66 2dgr_A Ring finger and KH doma 65.5 7.9 0.00027 30.3 4.6 62 49-115 9-73 (83)
67 2ctk_A Vigilin; K homology typ 63.9 8.2 0.00028 31.3 4.5 69 50-123 17-89 (104)
68 2axy_A Poly(RC)-binding protei 63.0 20 0.0007 26.8 6.3 63 50-117 5-71 (73)
69 3cdi_A Polynucleotide phosphor 61.3 1.7 5.9E-05 46.6 0.0 50 153-202 571-622 (723)
70 2ctj_A Vigilin; K homology typ 53.7 22 0.00075 28.4 5.4 61 50-116 17-83 (95)
71 2yqr_A KIAA0907 protein; struc 51.1 30 0.001 29.1 6.0 63 53-119 15-100 (119)
72 2ctm_A Vigilin; K homology typ 50.7 26 0.00089 27.8 5.3 61 50-116 17-83 (95)
73 4e9j_A General secretion pathw 49.4 50 0.0017 29.9 7.7 100 79-201 139-240 (246)
74 2ctl_A Vigilin; K homology typ 45.2 32 0.0011 27.3 5.1 64 49-117 16-86 (97)
75 2ba0_A Archeal exosome RNA bin 41.9 39 0.0013 30.9 5.8 69 153-222 147-218 (229)
76 1k1g_A SF1-BO isoform; splicin 40.9 70 0.0024 27.0 6.8 62 53-118 10-99 (131)
77 3iwl_A Copper transport protei 39.5 72 0.0025 22.2 5.7 30 66-95 14-44 (68)
78 3oss_D Type 2 secretion system 39.3 53 0.0018 28.9 6.0 29 173-201 148-178 (181)
79 3ezj_A General secretion pathw 38.9 1.1E+02 0.0038 27.4 8.3 30 173-202 136-167 (241)
80 2z0s_A Probable exosome comple 38.8 51 0.0017 30.1 6.0 70 152-222 158-231 (235)
81 3dm8_A Uncharacterized protein 36.4 36 0.0012 27.4 4.2 76 105-189 7-91 (143)
82 3ezj_A General secretion pathw 34.2 95 0.0033 27.8 7.0 112 69-201 124-238 (241)
83 3f14_A Uncharacterized NTF2-li 31.9 23 0.0008 27.4 2.2 67 107-189 5-80 (112)
84 4a4j_A Pacszia, cation-transpo 31.9 1.2E+02 0.0041 20.5 5.8 41 66-107 15-57 (69)
85 3can_A Pyruvate-formate lyase- 31.0 1.9E+02 0.0065 23.9 7.9 61 135-202 58-120 (182)
86 2kyz_A Heavy metal binding pro 28.2 1.4E+02 0.0047 20.0 5.8 46 66-121 14-61 (67)
87 3ec9_A Uncharacterized NTF2-li 28.2 46 0.0016 26.1 3.4 74 106-190 16-98 (140)
88 3dmc_A NTF2-like protein; stru 27.5 58 0.002 26.3 4.0 77 100-189 6-97 (134)
89 3dxs_X Copper-transporting ATP 27.4 1.2E+02 0.0041 20.9 5.2 42 67-108 16-59 (74)
90 3gr5_A ESCC; secretin, type II 27.3 2.8E+02 0.0095 23.7 8.5 30 172-201 118-149 (156)
91 2lfv_A Protein DAMX; cell divi 31.1 15 0.00051 30.2 0.0 27 177-203 58-86 (106)
92 1p90_A NAFY protein, hypotheti 22.7 1.5E+02 0.0052 25.0 5.8 77 158-234 53-144 (145)
93 1e3p_A Guanosine pentaphosphat 22.1 8.1 0.00028 41.7 -2.8 51 151-201 607-659 (757)
94 3iev_A GTP-binding protein ERA 21.7 30 0.001 32.0 1.3 27 151-177 250-284 (308)
95 2ctf_A Vigilin; K homology typ 20.7 2.2E+02 0.0075 22.7 6.1 62 51-117 28-91 (102)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=2.8e-52 Score=380.54 Aligned_cols=171 Identities=16% Similarity=0.297 Sum_probs=165.2
Q ss_pred eeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhcc
Q 017169 52 FSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130 (376)
Q Consensus 52 f~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeD 130 (376)
+.++||+||..||+..|+.+++.| +++++.|+||+.+|+|+|+||+.|+||++++||+|||+||+|||++++|++||+|
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~D 85 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE 85 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGST
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccC
Confidence 579999999999999999999999 5699999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecccc-ccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeCcEEEEecCCccHHHHHHHHHHHhcCCCC-c
Q 017169 131 EMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-P 208 (376)
Q Consensus 131 Di~~dIIdI~~~-v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI~Gs~H-p 208 (376)
|++||+|+|+++ ++|++||+|++|||||++|+|+++||++|||||+|+|+||+|||+|+++++||+|||+||.|++| +
T Consensus 86 d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~ 165 (191)
T 1tua_A 86 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHST 165 (191)
T ss_dssp TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCCEEEEEeChHHHHHHHHHHHHHHcCCCchh
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred hhHHHHHHHHHhhhc
Q 017169 209 VYHIKILMVKKELEK 223 (376)
Q Consensus 209 VY~ikelmiKreL~k 223 (376)
||++++.+ ++||..
T Consensus 166 vy~~~~~~-~~~~k~ 179 (191)
T 1tua_A 166 VYRHLERI-MREIKR 179 (191)
T ss_dssp HHHHHHHH-HHHHHH
T ss_pred HHHHHHHH-HHHHHH
Confidence 99999999 677743
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=100.00 E-value=7.7e-43 Score=323.42 Aligned_cols=169 Identities=21% Similarity=0.333 Sum_probs=156.9
Q ss_pred eeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhc
Q 017169 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129 (376)
Q Consensus 51 sf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLe 129 (376)
.+.+.||++|..+|...|+.+.+.| +++|++|+||+.+|+|+|++++.|+||.++++|++||++|+|||++++|..||+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~ 114 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN 114 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGS
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceecc
Confidence 4479999999999999999999999 679999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEecccc-c-cCchhhhhhhceecCCCCchHHHHHHHhCceEEEeCcEEEEecCCccHHHHHHHHHHHhcCCCC
Q 017169 130 DEMQCDIIKIGNL-V-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207 (376)
Q Consensus 130 DDi~~dIIdI~~~-v-~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI~Gs~H 207 (376)
||++||+|+|.++ + .+++++.|++|||||++|+|+++||++|||+|+|+|++|+|+|+|+++++||++|++||.|++|
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~~v~i~G~~~~i~~A~~~i~~li~g~~~ 194 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPH 194 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETTEEEEEECHHHHHHHHHHHHHHHTTCCH
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCeEEEEEeCHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999998 4 4778899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-hhHHHHHHHHH
Q 017169 208 P-VYHIKILMVKK 219 (376)
Q Consensus 208 p-VY~ikelmiKr 219 (376)
| ||++|+....|
T Consensus 195 ~~vy~~l~~~~~~ 207 (219)
T 2e3u_A 195 GSVYRYLERRKKD 207 (219)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH
Confidence 9 99999987643
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=92.95 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=104.0
Q ss_pred eeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-------cCeEEEEcCCCCCChhHHHhHHHHHHHHhcC----
Q 017169 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS---- 118 (376)
Q Consensus 51 sf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-------eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRG---- 118 (376)
++.+++|......|-.-=+..-+.| +++++.+.++.. ++.|+|. .+|..+.+|+++|..+...
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~ii~e~~~~ 77 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILRERDQG 77 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEE-----ECHHHHHHHHHHHHHHTTCSSSC
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHHhccCC
Confidence 5678999999999988888888888 689999998643 2367774 4688999999999998873
Q ss_pred -CChHHHHhhhccCceeEE-EeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeC-------cEEEEecCCc
Q 017169 119 -VPAPQAIKILDDEMQCDI-IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFK 189 (376)
Q Consensus 119 -F~~EqAlkLLeDDi~~dI-IdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G-------~TVsIIG~~~ 189 (376)
|++. +++...+ +.+.-.+ -....|+|||++|++.+.|+..|||+|.|.. .+|.|.|+.+
T Consensus 78 ~~~~~-------~~~~~~~~~~~~i~v-----p~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~ 145 (164)
T 2jvz_A 78 GFGDR-------NEYGSRIGGGIDVPV-----PRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPD 145 (164)
T ss_dssp CCSSC-------SSCTTSCSSSBCCEE-----ETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHH
T ss_pred CCCCc-------cccCCCCCceEEEEE-----ChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHH
Confidence 3321 1111100 0000001 1236899999999999999999999999984 5799999999
Q ss_pred cHHHHHHHHHHHhcC
Q 017169 190 GLKQVRRIVEDCMQN 204 (376)
Q Consensus 190 ~IkiAR~AIe~LI~G 204 (376)
++..|+..|++++.+
T Consensus 146 ~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 146 RCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999864
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.91 E-value=5.4e-09 Score=91.13 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=102.5
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc-----CeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChH
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE-----GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e-----GsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~E 122 (376)
.+++.+++|......|-.-=+..-+.| +++++.|.++... +.|+|.. ++..+.+|.++|..+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccC
Confidence 356789999999999988888877778 6899999997543 4677753 4789999999998887654310
Q ss_pred ---------HHHhhhccCc--------eeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeC------
Q 017169 123 ---------QAIKILDDEM--------QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG------ 179 (376)
Q Consensus 123 ---------qAlkLLeDDi--------~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G------ 179 (376)
.+...+.+++ ....+.|. ....|+|||++|++.+.|+..|||+|.|.+
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp---------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ 147 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVP---------TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNA 147 (174)
T ss_dssp ---------------------------CEEEEEEE---------TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTS
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEC---------hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCC
Confidence 0111111111 11122221 235799999999999999999999999986
Q ss_pred ----cEEEEecCCccHHHHHHHHHHHh
Q 017169 180 ----NTVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 180 ----~TVsIIG~~~~IkiAR~AIe~LI 202 (376)
.+|.|.|+.+++..|+..|.++|
T Consensus 148 ~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 148 DPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 46999999999999999999875
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.90 E-value=9.5e-09 Score=89.72 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=105.8
Q ss_pred eeeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc--------CeEEEEcCCCCCChhHHHhHHHHHHHHhcC
Q 017169 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE--------GSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (376)
Q Consensus 48 eessf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e--------GsV~V~Tt~kT~DP~~IlKArD~IkAiaRG 118 (376)
.+.++.+++|......|=.-=+..-+.| +++++.|.++... ..|+|.. ++..+.+|.++|..+.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhc
Confidence 4567889999999999988888777778 6899999997432 3577754 477899999999999888
Q ss_pred CChHHHHhhhccCceeEEEecccc--ccCchhh--------hhhhceecCCCCchHHHHHHHhCceEEEeCc--------
Q 017169 119 VPAPQAIKILDDEMQCDIIKIGNL--VRNKERF--------VKRRQHLVGPNSSTLKALEILTGCYILVQGN-------- 180 (376)
Q Consensus 119 F~~EqAlkLLeDDi~~dIIdI~~~--v~nke~f--------~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------- 180 (376)
++...+. .+.+++..- ..+.+.. ....|+|||++|++.+.|+..|||+|.|...
T Consensus 79 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~ 150 (178)
T 2anr_A 79 MPQNVAK--------TEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQN 150 (178)
T ss_dssp CCCC-------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCE
T ss_pred cCCcccc--------CCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCc
Confidence 7643221 111111100 0011111 1245999999999999999999999999865
Q ss_pred -EEEEecCCccHHHHHHHHHHHhcC
Q 017169 181 -TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 181 -TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
+|.|.|+.+++..|+..|..++..
T Consensus 151 ~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 151 RVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999976
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.85 E-value=1.6e-08 Score=86.94 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=104.4
Q ss_pred eeeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC------cCeEEEEcCCCCCChhHHHhHHHHHHHHhcCC-
Q 017169 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV- 119 (376)
Q Consensus 48 eessf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~------eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF- 119 (376)
|..++.+++|.....+|=.-=+..-+.| +++|+.+.++.. +..|+|. .+|..+.+|+.+|..+....
T Consensus 1 ~~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~-----G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 1 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIIT-----GPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp -CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEE-----ECHHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHhccc
Confidence 3567889999999999988888888888 689999998753 2247774 46889999998887664322
Q ss_pred --ChHHHHhhhccCc-eeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeCc---------EEEEecC
Q 017169 120 --PAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN---------TVAAMGS 187 (376)
Q Consensus 120 --~~EqAlkLLeDDi-~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~---------TVsIIG~ 187 (376)
++. ++. ....+.|. ....|+|||++|++.+.|...|||+|.|.+. +|.|.|+
T Consensus 76 ~~~~~-------~~~~~~~~i~vp---------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~ 139 (163)
T 3krm_A 76 FFGPK-------EEVKLETHIRVP---------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH 139 (163)
T ss_dssp SSCSS-------CCCCEEEEEEEE---------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC
T ss_pred ccccc-------cCCceEEEEEcC---------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC
Confidence 111 111 11122222 2368999999999999999999999999876 7999999
Q ss_pred CccHHHHHHHHHHHhcC
Q 017169 188 FKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 188 ~~~IkiAR~AIe~LI~G 204 (376)
.+++..|+..|.+++..
T Consensus 140 ~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 140 FYASQMAQRKIRDILAQ 156 (163)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999854
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=2.3e-07 Score=79.51 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=99.9
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc---CeEEEEcCCCCCChhHHHhHHHHHHHHhc-----CCC
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSR-----SVP 120 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e---GsV~V~Tt~kT~DP~~IlKArD~IkAiaR-----GF~ 120 (376)
..+.+++|......|=.-=+..-+.| +++|+.+.++... +.|+|.. ++..+.+|+.+|..+.. +++
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~e~~~~~~~ 79 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLEEDISSSMT 79 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEE-----EHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHHhhccccCC
Confidence 45688999999999988888777778 6899999998652 3777765 36889999998864321 110
Q ss_pred hHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeC--------cEEEEecCCccHH
Q 017169 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG--------NTVAAMGSFKGLK 192 (376)
Q Consensus 121 ~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G--------~TVsIIG~~~~Ik 192 (376)
...+ ....-....+.|. ....|+|||++|++.+.|+..|||+|.|.+ .+|.|.|+.+++.
T Consensus 80 ~~~~---~~~~~~~~~i~vp---------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~ 147 (160)
T 2jzx_A 80 NSTA---ASRPPVTLRLVVP---------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSII 147 (160)
T ss_dssp SSSC---CCCCSEEEEEEEE---------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHH
T ss_pred CCcc---CCCCCEEEEEEEC---------hhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHH
Confidence 0000 0000111112221 236899999999999999999999999985 6799999999999
Q ss_pred HHHHHHHHHhc
Q 017169 193 QVRRIVEDCMQ 203 (376)
Q Consensus 193 iAR~AIe~LI~ 203 (376)
.|+..|+.++.
T Consensus 148 ~A~~~I~~~i~ 158 (160)
T 2jzx_A 148 ECVKQICVVML 158 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988873
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.41 E-value=1.8e-07 Score=71.78 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=48.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc----------EEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~----------TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|+|.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|..++.
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred HcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999973 79999999999999999999874
No 9
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.34 E-value=2.9e-07 Score=72.84 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=49.1
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc----------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~----------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|.|.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|+.++..
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999973 799999999999999999999853
No 10
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.31 E-value=4e-07 Score=71.87 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=47.9
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-E--------EEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-T--------VAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-T--------VsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|+|++.|+..|||+|.|.++ + |.|.|+.+++..|+..|.+++.
T Consensus 24 ~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 24 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999874 3 9999999999999999999873
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.28 E-value=5.8e-07 Score=72.14 Aligned_cols=53 Identities=11% Similarity=0.381 Sum_probs=49.7
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|+|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|++++..
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999985 799999999999999999999853
No 12
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.26 E-value=6.2e-07 Score=72.88 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=48.6
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc------EEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN------TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~------TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..++|||++|+|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|++|+.
T Consensus 27 ~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 27 VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999886 89999999999999999999873
No 13
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=72.48 Aligned_cols=56 Identities=14% Similarity=0.358 Sum_probs=51.2
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc----------EEEEecCCccHHHHHHHHHHHhcCCCC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQNKMH 207 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~----------TVsIIG~~~~IkiAR~AIe~LI~Gs~H 207 (376)
..|+|||++|+|++.|+..|||+|.|.+. +|.|.|+.+++..|+..|+++|....+
T Consensus 17 ~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 17 KCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred HcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 57999999999999999999999999874 699999999999999999999976443
No 14
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.25 E-value=5.7e-07 Score=69.38 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=48.6
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-------cEEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-------~TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|++.+.|+..|||+|.|.+ ..|.|.|+.+++..|+..|..++.
T Consensus 15 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 15 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999996 569999999999999999999885
No 15
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.24 E-value=3.7e-07 Score=78.65 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=55.1
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-----------------------EEEEec-CCccHHHHHHHHHHHhcCCC-
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-----------------------TVAAMG-SFKGLKQVRRIVEDCMQNKM- 206 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----------------------TVsIIG-~~~~IkiAR~AIe~LI~Gs~- 206 (376)
.+||||||+|+|.+.||.-|||.|.|.|+ +|.|.| +.+.+..|...|+.|+.-.+
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~~~ 102 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIE 102 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTTTS
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhccCC
Confidence 68999999999999999999999999873 788988 46779999999999996522
Q ss_pred Cc-hhHHHHHHHHHhhh
Q 017169 207 HP-VYHIKILMVKKELE 222 (376)
Q Consensus 207 Hp-VY~ikelmiKreL~ 222 (376)
.| -++.+....=||||
T Consensus 103 ~p~~~d~~k~~Ql~eLa 119 (131)
T 1k1g_A 103 TPEDQNDLRKMQLRELA 119 (131)
T ss_dssp CCTTSSGGGGGGGHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 23 34444444445665
No 16
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.20 E-value=1.9e-06 Score=69.36 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=49.1
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc---------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN---------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~---------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|.|++.|+..|||+|.|... .|.|.|+.+++..|+..|++++..
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 25 KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred hcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999864 299999999999999999999965
No 17
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.19 E-value=1.8e-06 Score=75.59 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=63.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-------------------------EEEEecC-Cc-----cHHHHHHHHHH
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-------------------------TVAAMGS-FK-----GLKQVRRIVED 200 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------------------------TVsIIG~-~~-----~IkiAR~AIe~ 200 (376)
.+||||||.|.|.+.||..|||+|.|.|+ +|.|.|+ ++ .|..|.+.|+.
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~ 97 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKK 97 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999983 7888884 43 58889999999
Q ss_pred HhcCCCCchhHHHHHHHHHhhhc-Ccccccccccc
Q 017169 201 CMQNKMHPVYHIKILMVKKELEK-DPALANENWDR 234 (376)
Q Consensus 201 LI~Gs~HpVY~ikelmiKreL~k-d~~l~~e~W~r 234 (376)
|+.- .|.-++.+....=|||+- +..++..+|-+
T Consensus 98 lL~p-~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 98 LLVP-AAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp HSSC-CSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred HCCC-CCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 8865 454455555555578875 45666666643
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.19 E-value=1.4e-06 Score=68.38 Aligned_cols=52 Identities=10% Similarity=0.302 Sum_probs=48.5
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-------EEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|++.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|..++.
T Consensus 17 ~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 17 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp TGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999974 79999999999999999999874
No 19
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.18 E-value=1.3e-06 Score=67.08 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=46.7
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-----EEEEecCCccHHHHHHHHHHHh
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----TVsIIG~~~~IkiAR~AIe~LI 202 (376)
..|+|||++|++.+.|+.-|||.|.|.+. +|.|.|+.+++..|+..|..+.
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999874 8999999999999999988764
No 20
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.15 E-value=1.2e-06 Score=71.84 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=49.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC---------cEEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG---------NTVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G---------~TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|.|++.|+..|||+|.|.+ .+|.|.|+.+++..|+..|..++..
T Consensus 25 ~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 25 SVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999995 5699999999999999999999865
No 21
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=1.7e-06 Score=73.79 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=49.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-----------------EEEEecC-CccHHHHHHHHHHHhcCCCCc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-----------------TVAAMGS-FKGLKQVRRIVEDCMQNKMHP 208 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----------------TVsIIG~-~~~IkiAR~AIe~LI~Gs~Hp 208 (376)
.+|+|||++|+|.+.|+.-|||.|.|.|+ +|.|.++ .+.++.|+..|++|+.- +|.
T Consensus 29 ~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~-v~~ 102 (119)
T 2yqr_A 29 VKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQT-VHA 102 (119)
T ss_dssp HHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHH-HHH
T ss_pred eeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhc-hHH
Confidence 68999999999999999999999999865 8999865 67799999999999876 444
No 22
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.11 E-value=1.2e-05 Score=69.44 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=87.6
Q ss_pred eeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-cCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhcc
Q 017169 53 STLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130 (376)
Q Consensus 53 ~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeD 130 (376)
.+++|..-...+=..-+..-+.| +++++.+-.... ...+.+.. ..|..+.+|+.++. +.
T Consensus 7 ~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~----~~p~~v~~~~~~l~-------------~~-- 67 (144)
T 2qnd_A 7 QFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYG----EDQDAVKKARSFLE-------------FA-- 67 (144)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHC-------------EE--
T ss_pred EEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeecc----CCHHHHHHHHHhhh-------------cc--
Confidence 47889999988888888777777 678866533333 33344333 67777777765432 00
Q ss_pred CceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCc-eEEEeCc------------EEEEecCCccHHHHHHH
Q 017169 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC-YILVQGN------------TVAAMGSFKGLKQVRRI 197 (376)
Q Consensus 131 Di~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~-~I~V~G~------------TVsIIG~~~~IkiAR~A 197 (376)
+ ..+- +. ....|++||++|.+.+-|..+||| +|.|.+. +|.|+|+.+++..|+..
T Consensus 68 e---~~v~----Vp-----~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~l 135 (144)
T 2qnd_A 68 E---DVIQ----VP-----RNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVL 135 (144)
T ss_dssp E---EEEE----EE-----GGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHH
T ss_pred e---EEEE----EC-----HHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHH
Confidence 1 1111 21 236799999999999999999997 9999852 38899999999999999
Q ss_pred HHHHhcC
Q 017169 198 VEDCMQN 204 (376)
Q Consensus 198 Ie~LI~G 204 (376)
|+++|..
T Consensus 136 i~~~l~~ 142 (144)
T 2qnd_A 136 LDYHLNY 142 (144)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999854
No 23
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.11 E-value=1.4e-06 Score=69.35 Aligned_cols=52 Identities=10% Similarity=0.309 Sum_probs=48.5
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-------cEEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-------~TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|+|++.|+..|||+|.|.+ .+|.|.|+.+++..|+..|+.++.
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999997 569999999999999999999874
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.09 E-value=2.2e-06 Score=67.10 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=48.6
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|++.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|..++..
T Consensus 16 ~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 16 LIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSS 75 (82)
T ss_dssp GHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC-
T ss_pred hccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999873 699999999999999999999865
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.08 E-value=2.2e-06 Score=70.70 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=49.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-----EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|+|.+.|+.-|||.|.|.+. +|.|.|+.+++..|+..|..++.-
T Consensus 27 ~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 27 LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999886 899999999999999999998754
No 26
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.02 E-value=3.9e-06 Score=68.34 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=52.6
Q ss_pred eeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeCc--------EEEEecCCccHHHHHHHHHHHhc
Q 017169 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN--------TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 133 ~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~--------TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
+...|.|.. ...++|||++|++.+.|...|||+|.|.+. .|.|.|+.+++..|+..|..++.
T Consensus 17 ~~~~i~Ip~---------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 17 FKLSVTVDP---------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp CEEEEECCT---------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECH---------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 455666653 257899999999999999999999999763 79999999999999999998863
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=3.9e-06 Score=69.62 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=48.4
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..++|||++|+|++.|+..|+|+|.|... +|.|.|+.+++..|+..|++++..
T Consensus 21 ~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 21 SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999742 699999999999999999999843
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.98 E-value=4.3e-06 Score=64.43 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=48.7
Q ss_pred hhhceecCCCCchHHHHHHHhCceEEEeCc-----EEEEecCCccHHHHHHHHHHHhc
Q 017169 151 KRRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 151 RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
...|+|||++|.+.+.|...|||+|.|.+. .|.|.|+.+++..|...|..+|.
T Consensus 14 ~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 14 KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 357999999999999999999999999986 59999999999999999998875
No 29
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=4.6e-06 Score=67.25 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=47.5
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-----cEEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-----NTVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-----~TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|.|||++|+|.+.|+.-|||+|.|.+ .+|.|.|+.+++..|+..|..++.
T Consensus 27 ~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 27 HHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp THHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999973 589999999999999999998873
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=1.9e-05 Score=62.86 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=47.6
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEe----CcEEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQ----GNTVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~----G~TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|-|||++|.|.+.|+..|||+|.|. +..|.|.|+.+++..|+..|+.++.
T Consensus 20 ~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 20 VVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp HHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred HeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999998 3469999999999999999999873
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.58 E-value=4.6e-05 Score=64.96 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=48.1
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC---------cEEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG---------NTVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G---------~TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|.+.+.|+..|||+|.|.. ..|.|.|+.+++..|+..|..+|..
T Consensus 12 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 12 KAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 73 (164)
T ss_dssp CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred heeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999998853 2799999999999999999999975
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.55 E-value=4.2e-05 Score=65.34 Aligned_cols=52 Identities=12% Similarity=0.251 Sum_probs=47.1
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc-----EEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~-----TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
..|+|||++|.+.+.|+..|||+|.|.+. +|.|.|+.+++..|+..|..+|.
T Consensus 15 ~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 15 EVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred heeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999875 79999999999999988887763
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.41 E-value=9e-05 Score=64.38 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=48.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-------cEEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-------NTVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-------~TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|+|||++|.+.+.|+..|||+|.|.. ..|.|.|+.+++..|+..|..++..
T Consensus 13 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 13 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRS 72 (174)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred heeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999974 2689999999999999999999864
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.40 E-value=0.00012 Score=63.70 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=50.5
Q ss_pred hhhceecCCCCchHHHHHHHhCceEEEeCc----------EEEEecCCccHHHHHHHHHHHhcCCCC
Q 017169 151 KRRQHLVGPNSSTLKALEILTGCYILVQGN----------TVAAMGSFKGLKQVRRIVEDCMQNKMH 207 (376)
Q Consensus 151 RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~----------TVsIIG~~~~IkiAR~AIe~LI~Gs~H 207 (376)
...|+|||++|.+.+.|+..|||+|.|... .|.|.|+.+++..|+..|..++....+
T Consensus 15 ~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 15 YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 368999999999999999999999999753 689999999999999999999977443
No 35
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.30 E-value=0.00018 Score=58.59 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred cCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHh-CceEEEeCc-----EEEEecCCccHHHHHHHHHHHhc
Q 017169 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT-GCYILVQGN-----TVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 130 DDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT-~~~I~V~G~-----TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
+++.-+.|.|.. ...+.|||++|++++.|+.-| ||.|.|-+. +|.|.|+-.++..|+..|..++.
T Consensus 14 ~~~vt~~i~Ip~---------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 14 ANIAEVEVSIPA---------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CSSCCEEEECCH---------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECH---------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 444455555552 246789999999999999999 999999863 89999999999999999999874
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.29 E-value=0.00015 Score=62.14 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=47.7
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc--------EEEEecCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN--------TVAAMGSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~--------TVsIIG~~~~IkiAR~AIe~LI~G 204 (376)
..|.|||++|.+.+.|+..|||.|.|... .|.|.|+.+++..|+..|.++|..
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999764 499999999999999999888854
No 37
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.89 E-value=0.00027 Score=57.83 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=42.6
Q ss_pred hhceecCCCCchHHHHHHHhCce-EEEeC--cEEEEec-CCccHHHHHHHHHHH
Q 017169 152 RRQHLVGPNSSTLKALEILTGCY-ILVQG--NTVAAMG-SFKGLKQVRRIVEDC 201 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~-I~V~G--~TVsIIG-~~~~IkiAR~AIe~L 201 (376)
..|-+||++|+|.+.|...|||. |.|.+ .+|.|.| +-+.++.|+..|+.+
T Consensus 25 kIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 25 LMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred HhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 57889999999999999999998 99993 8899999 667777777776544
No 38
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.63 E-value=0.0015 Score=53.68 Aligned_cols=52 Identities=10% Similarity=0.233 Sum_probs=46.8
Q ss_pred hhceecCCCCchHHHHHH-HhCceEEEe--CcEEEEecCCccHHHHHHHHHHHhc
Q 017169 152 RRQHLVGPNSSTLKALEI-LTGCYILVQ--GNTVAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~-LT~~~I~V~--G~TVsIIG~~~~IkiAR~AIe~LI~ 203 (376)
.-+.|||++|.+++-|+. .|+|.|.+- ++.|.|-|+.+++..|+..|+.++.
T Consensus 37 ~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 37 LHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp THHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 346899999999999998 689999998 5679999999999999999998874
No 39
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=96.29 E-value=0.0014 Score=69.02 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=42.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-cEEEEecCC-ccHHHHHHHHHHHh
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGSF-KGLKQVRRIVEDCM 202 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-~TVsIIG~~-~~IkiAR~AIe~LI 202 (376)
.+|+|||++|+|.+.|+.-|||.|.|.+ .+|.|.|+- +.+..|++.|+.++
T Consensus 577 kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 577 KRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred HhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999965 679999975 45777887776654
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.60 E-value=0.01 Score=54.96 Aligned_cols=54 Identities=22% Similarity=0.144 Sum_probs=48.6
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEe--CcEEEEecCC-----ccHHHHHHHHHHHhcCC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQ--GNTVAAMGSF-----KGLKQVRRIVEDCMQNK 205 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~--G~TVsIIG~~-----~~IkiAR~AIe~LI~Gs 205 (376)
+.|-|||++|+|.+.|+.-|||.|-|. +.+|.|-|+- +.+.-|++.|..++.|.
T Consensus 44 kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~ 104 (219)
T 2e3u_A 44 RIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGF 104 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccC
Confidence 688899999999999999999999998 3679988875 88999999999999883
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.08 E-value=0.0083 Score=59.87 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=45.3
Q ss_pred hhceecCCCC--chHHHHHHHhCceEEEeCc------------EEEEecCCccHHHHHHHHHHHh
Q 017169 152 RRQHLVGPNS--STLKALEILTGCYILVQGN------------TVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 152 rrgRIIG~~G--kTkkaIE~LT~~~I~V~G~------------TVsIIG~~~~IkiAR~AIe~LI 202 (376)
--..|||++| .+.+-|-.-|||.|-+-+. .|.|-|..++++.||.+|.+|.
T Consensus 40 ~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 40 YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3457999999 9999999999999999652 4999999999999999999863
No 42
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.12 E-value=0.031 Score=55.78 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=43.1
Q ss_pred hceecCCCC--chHHHHHHHhCceEEEeC-----------cEEEEecCCccHHHHHHHHHHHh
Q 017169 153 RQHLVGPNS--STLKALEILTGCYILVQG-----------NTVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 153 rgRIIG~~G--kTkkaIE~LT~~~I~V~G-----------~TVsIIG~~~~IkiAR~AIe~LI 202 (376)
..+|||++| .+.+-|..-|||.|.+=+ .+|.|.|+.+++..||+.|..|+
T Consensus 197 H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 197 VDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred HHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 457999998 566999999999999763 26999999999999999999876
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=92.23 E-value=0.023 Score=60.96 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=9.5
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeC-cEEEEecCC-ccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGSF-KGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G-~TVsIIG~~-~~IkiAR~AIe~LI~G 204 (376)
.++.|||++|+|.+.|..-|||.|.|.+ .+|.|.+.- +.+..|+..|..+...
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ----------------------------------CCSCHHHHHHHHHC-------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999986 668888863 4578888888887743
No 44
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=91.80 E-value=0.13 Score=45.21 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=49.8
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEe-----CcE-EEEecCCccHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQ-----GNT-VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKE 220 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~-----G~T-VsIIG~~~~IkiAR~AIe~LI~Gs~HpVY~ikelmiKre 220 (376)
.-++|+|++|.-+..||..|+|-|-|. |.| |-|.|++.-=.-|...|..|.. |+...+|.+--
T Consensus 66 lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~------~hr~~~~~~~~ 134 (140)
T 3v69_A 66 LLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH------YCRMKLMEIEA 134 (140)
T ss_dssp GHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHH------HHHHHHHHHC-
T ss_pred hhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 578999999999999999999999986 344 9999999887788877777764 45555665433
No 45
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=91.60 E-value=0.12 Score=47.15 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=48.3
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCc--EEEEe-----cCCccHHHHHHHHHHHhcC
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGN--TVAAM-----GSFKGLKQVRRIVEDCMQN 204 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~--TVsII-----G~~~~IkiAR~AIe~LI~G 204 (376)
+.|=|||..|.|.+.|+..+||.|-+... .|.+- |+...+.-|++.|..++.|
T Consensus 14 rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 14 RLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 67889999999999999999999999964 58887 8888899999999999999
No 46
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=89.64 E-value=1.5 Score=34.00 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=52.1
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcCe--------EEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGS--------MTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eGs--------V~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
....+.+|..+...|=.-=+..-+.| +++|+.+.++- +|. |+|. .+|..+.+|.++|.+|.+
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~-----G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCSSTTSCEEEEEE-----ECHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCCCCCCceEEEEE-----eCHHHHHHHHHHHHHHhc
Confidence 44578999999999998888888889 68999999986 565 8875 488999999999998853
No 47
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=89.50 E-value=0.087 Score=49.25 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=61.2
Q ss_pred hceecCCCCchHHHHHHHhCceEEEe-CcE--EEE-ecCCcc------HHHHHHHHHHHh-cCCCC---chhHHHHHHHH
Q 017169 153 RQHLVGPNSSTLKALEILTGCYILVQ-GNT--VAA-MGSFKG------LKQVRRIVEDCM-QNKMH---PVYHIKILMVK 218 (376)
Q Consensus 153 rgRIIG~~GkTkkaIE~LT~~~I~V~-G~T--VsI-IG~~~~------IkiAR~AIe~LI-~Gs~H---pVY~ikelmiK 218 (376)
-|+|||++|.|+.||+.||+..+.-. |.. |.+ +|.|.. ...|++++.... .|.+. |+-.+=+.++-
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH 182 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIH 182 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHH
T ss_pred cceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHH
Confidence 68999999999999999999776533 433 444 566644 378888988888 56543 67777788999
Q ss_pred HhhhcCccccccc
Q 017169 219 KELEKDPALANEN 231 (376)
Q Consensus 219 reL~kd~~l~~e~ 231 (376)
.-|+.++.+.++|
T Consensus 183 ~al~~~~~V~T~S 195 (225)
T 3gku_A 183 AALQNDKYVVTRS 195 (225)
T ss_dssp HHTTTCSSEEEEE
T ss_pred HHHccCCCcEEEE
Confidence 9999999988765
No 48
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.27 E-value=0.43 Score=38.88 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=57.8
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceE-EEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHH
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVS-CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~-i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~Eq 123 (376)
....+.+|+.....+=.-=+.+-+.| +++|+. +.++-.+|.|+|.. .|+-++.+|+++|..+--.|.+++
T Consensus 15 ~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~ie~~~~vp~ 86 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFVEDFIQVPS 86 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCCCCCCCCCS
T ss_pred eEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhhheEEecCh
Confidence 33467799999999988888888888 789997 99997679999987 678899999999988776666543
No 49
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=86.23 E-value=1.3 Score=33.33 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=51.4
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC--------cCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~--------eGsV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
.+..+++|......|=.--+..-+.| +.+|+.+.++.. ++.|+|.. +|..+.+|.++|.++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-----SHHHHHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 35678999999999988888888888 679999999864 36788854 4889999999999874
No 50
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=84.31 E-value=1.1 Score=35.54 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=53.2
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC---cCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV---EGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~---eGsV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
..+..+.+|+....+|-.--+..-+.| +++|+.|.++.. +|.|+|.. ++..+.+|+++|..+.
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLIS 82 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHh
Confidence 345678999999999999998888888 689999999753 58999965 3899999999999885
No 51
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=80.56 E-value=3.7 Score=30.91 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=51.7
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEc-----CcCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL-----VEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl-----~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
.++.+++|......|=.-=+..-+.| +.+|+.+.++- .++.|+|.. +|..+.+|.++|..+..
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 45678999999999988888888888 67999999886 368888864 48999999999998754
No 52
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=80.18 E-value=3.5 Score=31.91 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=51.4
Q ss_pred eeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC--------cCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 51 sf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~--------eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
++.+++|......|=.--+..-+.| +.+|+.|.++.. ++.|+|.. +|..+.+|.++|..+..
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRVT 74 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 5578999999999999898888888 679999999864 25778754 48899999999998854
No 53
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=79.95 E-value=2.4 Score=34.18 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=52.8
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEc-------CcCeEEEEcCCCCCChhHHHhHHHHHHHHhcC
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL-------VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl-------~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRG 118 (376)
....+++|......|-.--+..-+.| +++|+.|.++- .++.|+|..+ +-.+.+|.++|..+...
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-----~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-----QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhh
Confidence 34578999999999999999888889 68999999986 3688999753 34799999999988653
No 54
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=79.95 E-value=4.2 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=51.3
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-----cCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-----eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
.+..+++|......|=.-=+..-+.| +++|+.|.++-. ++.|+|. .+|..+.+|.++|.++..
T Consensus 6 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 6 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT-----GSAASISLAQYLINARLS 74 (82)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEE-----ECHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHH
Confidence 45678999999999988888888888 679999999763 5678885 456899999999998854
No 55
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=77.27 E-value=4 Score=31.85 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=52.8
Q ss_pred eeeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-----cCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 48 eessf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-----eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
...+..+++|......|-.-=+..-+.| +++++.|.++.. ++.|+|.. .|..+.+|+++|..+..
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 3456678999999999988888888888 679999999863 57888865 37899999999998753
No 56
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=75.86 E-value=6.4 Score=32.12 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=50.5
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcC-----eEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eG-----sV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
-.++.+++|......|---=...-+.| +++++.|.|+...+ .|+|.. +|..+.+|+++|..|..
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLLQ 79 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 346689999999999988888888888 68999999976543 577764 37899999999998854
No 57
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=74.87 E-value=3.3 Score=32.70 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=53.1
Q ss_pred eeeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-------cCeEEEEcCCCCCChhHHHhHHHHHHHHhcCC
Q 017169 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119 (376)
Q Consensus 48 eessf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-------eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF 119 (376)
...++.+++|......|----+..-+.| +++++.|.++-. ++.|+|.. +|..+.+|+++|..+....
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-----DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-----CTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHhcc
Confidence 3455679999999999988888888888 679999998753 23377753 6679999999999987643
No 58
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=71.12 E-value=7 Score=29.92 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=50.7
Q ss_pred eeeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-----cCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 48 eessf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-----eGsV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
...+..+++|......|=.-=+..-+.| +++++.|.++.. ++.|+|.. +|..+.+|+++|..+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 3456678999999988887777777778 679999998753 35777754 4789999999999874
No 59
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=70.01 E-value=4.6 Score=42.66 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=51.2
Q ss_pred eeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 53 STLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 53 ~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
.+-+|+.+..-|=.-=+.+.+.| +++|++|.++ .+|.|.|.. .|+..+.+|.++|++|.
T Consensus 570 ~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~----~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 570 TVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA----PTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE----SSHHHHHHHHHHTTC--
T ss_pred EEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe----CCHHHHHHHHHHHHHHh
Confidence 56799999999999999999989 7899999998 589999987 67889999999998764
No 60
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=69.90 E-value=5.9 Score=31.12 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=50.0
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcC-----cCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~-----eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
.++.+++|......|-.-=+..-+.| +++++.|.++-. ++.|+|.. +|..+.+|+++|..+..
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIVE 83 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 34578999998888877777777778 679999999875 24788864 47899999999998753
No 61
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=68.88 E-value=5.1 Score=32.45 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=49.1
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc--------CeEEEEcCCCCCChhHHHhHHHHHHHHhcC
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE--------GSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e--------GsV~V~Tt~kT~DP~~IlKArD~IkAiaRG 118 (376)
+++.++||......|=--=+..-+.| +++++.|.++-.. +.|+|. .++..+.+|+++|..+...
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~-----G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIR-----GSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEE-----SCHHHHHHHHHHHHHHSCS
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHHHhc
Confidence 35678899988877766666666667 6899999998652 677774 4778999999999988553
No 62
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=66.90 E-value=1.9 Score=36.72 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=33.2
Q ss_pred hhhceecCCCCchHHHHHHHhCceEEEeC---cEEEEec-CCccHHHHHH
Q 017169 151 KRRQHLVGPNSSTLKALEILTGCYILVQG---NTVAAMG-SFKGLKQVRR 196 (376)
Q Consensus 151 RrrgRIIG~~GkTkkaIE~LT~~~I~V~G---~TVsIIG-~~~~IkiAR~ 196 (376)
..-|.+||++|.+.+.|...+|+.|+.+. .++.+.| +.+.+..|+.
T Consensus 13 ~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 13 DLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp GGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cceeeEECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHH
Confidence 35789999999999999999997776654 2344444 4566666654
No 63
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=66.42 E-value=1.7 Score=38.33 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=49.2
Q ss_pred HHhHHHHHHHHhcCCChHH-HHhhh-ccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEE-eCcE
Q 017169 105 IVKARDLIRLLSRSVPAPQ-AIKIL-DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV-QGNT 181 (376)
Q Consensus 105 IlKArD~IkAiaRGF~~Eq-AlkLL-eDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V-~G~T 181 (376)
+..+.+|+.-|...+.++- ++.+. .|+- .-.|+|.. + --|.|||+.|.|+.||+-|++-.|.= ++-.
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~-~i~i~i~g-----e----d~glLIGK~G~TL~ALQyL~~~~vn~~~~~~ 73 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPG-VLLIDIDG-----E----DSALLIGEKGYRYKALSYLLFNWIHPTYGYS 73 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETT-EEEEEEEE-----G----GGTTTTCGGGHHHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCC-EEEEEEec-----C----CcceEECCCCcchHHHHHHHHHHhhhcCCce
Confidence 3456777777766555532 24442 2221 11223321 1 25899999999999999998554432 2323
Q ss_pred EEE-ecCCcc------HHHHHHHHHHHh
Q 017169 182 VAA-MGSFKG------LKQVRRIVEDCM 202 (376)
Q Consensus 182 VsI-IG~~~~------IkiAR~AIe~LI 202 (376)
|-+ ++.|.. ...|.++.+...
T Consensus 74 V~LDve~YRerReetL~~lA~~~A~kV~ 101 (152)
T 2pt7_G 74 IRLEISTFLQNQEKVMDTQLQSVIMTVH 101 (152)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444 566543 255666666555
No 64
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=65.75 E-value=11 Score=28.31 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=49.6
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcC----eEEEEcCCCCCChhHHHhHHHHHHHH
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLL 115 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eG----sV~V~Tt~kT~DP~~IlKArD~IkAi 115 (376)
..+..+.+|+....+|=.--+..-+.| +++|+.+.++- .| .|+|..+ +..+.+|+++|..|
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~-~g~~~~~V~I~G~-----~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-DSEKSNLIRIEGD-----PQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCC-CCSSSEEEEEEES-----SHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECC-CCCcccEEEEEcC-----HHHHHHHHHHHHHH
Confidence 345568899999999988888888888 78999999975 45 8999763 46899999999876
No 65
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=65.69 E-value=11 Score=34.42 Aligned_cols=113 Identities=7% Similarity=0.098 Sum_probs=69.5
Q ss_pred hHHHHHHH-hhcceEEEEEcC-cCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhccC--------------
Q 017169 68 WPMVKGAL-KEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-------------- 131 (376)
Q Consensus 68 W~~I~k~L-e~~~l~i~lDl~-eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeDD-------------- 131 (376)
+..+-..| +.+|+.+-+|.. .|.|++++ .||..-..+.+++..+.+...+ .+..++
T Consensus 31 i~~vl~~la~~~g~nivvdp~V~G~VTl~~----~~pv~~~~~~~~l~~vL~~~gl----~~~~~g~v~~V~p~~~~~~~ 102 (246)
T 4e9j_A 31 IREFIDQISEITGETFVVDPRVKGQVSVVS----KAQLSLSEVYQLFLSVMSTHGF----TVVAQGDQARIVPNAEAKTE 102 (246)
T ss_dssp HHHHHHHHHHHHCCCEEECTTCCCEEEEEE----EEEEEHHHHHHHHHHHHHHTTE----EEEECSSSEEEEECC-----
T ss_pred HHHHHHHHHHHhCCeEEECCCCceEEEEEe----CCCCCHHHHHHHHHHHHHHCCC----EEEEeCCEEEEeehhhhhcc
Confidence 34455556 568999999984 89999987 4555555555556555443322 112233
Q ss_pred ----------ceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCceEEEeC--cEEEEecCCccHHHHHHHHH
Q 017169 132 ----------MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVE 199 (376)
Q Consensus 132 ----------i~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G--~TVsIIG~~~~IkiAR~AIe 199 (376)
+...+|.|... +-+.+......|+.+ ++.|.++. |++-|-|+...|..+++.|.
T Consensus 103 ~~~~~~~~~~~~t~vi~L~~~--~a~~l~~~L~~lls~------------~g~v~~d~~tN~Liv~g~~~~i~~i~~li~ 168 (246)
T 4e9j_A 103 AGGGQSAPDRLETRVIQVQQS--PVSELIPLIRPLVPQ------------YGHLAAVPSANALIISDRSANIARIEDVIR 168 (246)
T ss_dssp ------CCSCCEEEEEECSSS--CHHHHHHHHGGGSCT------------TSEEEEEGGGTEEEEEECHHHHHHHHHHHH
T ss_pred ccccccCCCccEEEEEEecCC--CHHHHHHHHHHhcCC------------CceEEEcCCCCEEEEEcCHHHHHHHHHHHH
Confidence 33444444432 123333333333332 36788876 67999999999999999999
Q ss_pred HHh
Q 017169 200 DCM 202 (376)
Q Consensus 200 ~LI 202 (376)
.|=
T Consensus 169 ~lD 171 (246)
T 4e9j_A 169 QLD 171 (246)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 66
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.53 E-value=7.9 Score=30.30 Aligned_cols=62 Identities=13% Similarity=-0.016 Sum_probs=48.9
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEc--CcCeEEEEcCCCCCChhHHHhHHHHHHHH
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL--VEGSMTVSTTRKTRDPYIIVKARDLIRLL 115 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl--~eGsV~V~Tt~kT~DP~~IlKArD~IkAi 115 (376)
..+..+.+|......|=.-.+..-+.| +++++.+.+.. .+..|+| |.+|..+.+|+++|..+
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~I-----tG~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAV-----TGMPENVDRAREEIEAH 73 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEE-----EECTTTHHHHHHHHHHH
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEE-----EcCHHHHHHHHHHHHHH
Confidence 345568899999999988888888888 67999998884 2444555 35678999999999886
No 67
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=63.90 E-value=8.2 Score=31.26 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=53.8
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc---CeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHH
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e---GsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~Eq 123 (376)
....+.+|+....+|=.--+..-+.| +++|+.|.++-.. +.|+|..+ +..+.+|+++|..+...+.-+.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-----~e~v~~A~~~I~~i~~e~e~~~ 89 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-----AANLDRAKAGLLERVKELQAEQ 89 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhhHHHhH
Confidence 34467899999999999988888888 6899999887532 28999762 4789999999999876544333
No 68
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=63.04 E-value=20 Score=26.79 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=50.3
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc---CeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e---GsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
..+.+++|......|=.-=+..-+.| +++|+.+.++... +.|+|.. +|..+.+|.++|..+.+
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 45678999999999988888888888 6899999998652 2477754 48899999999987643
No 69
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=61.27 E-value=1.7 Score=46.55 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred hceecCCCCchHHHHHHHhCceEEEeC-cEEEEecC-CccHHHHHHHHHHHh
Q 017169 153 RQHLVGPNSSTLKALEILTGCYILVQG-NTVAAMGS-FKGLKQVRRIVEDCM 202 (376)
Q Consensus 153 rgRIIG~~GkTkkaIE~LT~~~I~V~G-~TVsIIG~-~~~IkiAR~AIe~LI 202 (376)
++.+||++|+|.+.|..-||+.|-|.+ .+|+|.+. ...++.|++.|+.++
T Consensus 571 i~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 571 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp ----------------------------------------------------
T ss_pred hcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHh
Confidence 458999999999999888999999997 45777664 445666777666655
No 70
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=53.72 E-value=22 Score=28.41 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=49.6
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhc-ceEEEEEcCcC----eEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEY-GVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~-~l~i~lDl~eG----sV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
.+..+.+|+-...+|-.--+.+-+.| +++ ++.|.++- .| .|+|.. .+. .+.+|+++|..|.
T Consensus 17 vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g~~~~~V~I~G----~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EGSGSDTVVIRG----PSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp CCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TTTTCCEEEEES----CHH-HHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CCCCcceEEEEc----CHH-HHHHHHHHHHHHH
Confidence 34467799999999999998888888 788 89988864 56 899987 333 9999999999885
No 71
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.07 E-value=30 Score=29.06 Aligned_cols=63 Identities=14% Similarity=-0.015 Sum_probs=43.1
Q ss_pred eeecCcc---h-HHHHHhhh---HHHHHHH-hhcceEEEEEc---------------CcCeEEEEcCCCCCChhHHHhHH
Q 017169 53 STLFPQY---R-EKYLQEAW---PMVKGAL-KEYGVSCELNL---------------VEGSMTVSTTRKTRDPYIIVKAR 109 (376)
Q Consensus 53 ~~lfPky---R-e~yLKe~W---~~I~k~L-e~~~l~i~lDl---------------~eGsV~V~Tt~kT~DP~~IlKAr 109 (376)
.++||-. . ...+..+= +.+-+.| +++|++|.|.- ..+.|.|.. .|+-.+.+|.
T Consensus 15 ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i~~A~ 90 (119)
T 2yqr_A 15 KLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGLAAAK 90 (119)
T ss_dssp EEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHHHHHH
T ss_pred EEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHHHHHH
Confidence 5666653 2 33444433 3444455 78999999872 347888886 7889999999
Q ss_pred HHHHHHhcCC
Q 017169 110 DLIRLLSRSV 119 (376)
Q Consensus 110 D~IkAiaRGF 119 (376)
.+|..|..-+
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999886543
No 72
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=50.75 E-value=26 Score=27.80 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=50.7
Q ss_pred eeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCcC-----eEEEEcCCCCCChhHHHhHHHHHHHHh
Q 017169 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLS 116 (376)
Q Consensus 50 ssf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~eG-----sV~V~Tt~kT~DP~~IlKArD~IkAia 116 (376)
.+..+.+|+.....|=.--+..-+.| +++++.|.++- .| .|+|.. .|-.+.+|+++|..|.
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~-~g~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQ-SGAPDPNCVTVTG-----LPENVEEAIDHILNLE 83 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCC-TTCSCTTEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecC-CCCCCCcEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 34568899999999999999888888 68999999875 45 799865 3578999999999985
No 73
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=49.36 E-value=50 Score=29.90 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=71.8
Q ss_pred ceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecC
Q 017169 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVG 158 (376)
Q Consensus 79 ~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG 158 (376)
...+..|..++++.|+ ..|..+.+++++|+.|-.-.. ...++|.|... +-+.+......+.|
T Consensus 139 ~g~v~~d~~tN~Liv~-----g~~~~i~~i~~li~~lD~p~~-----------~~~~vi~l~~a--~A~dl~~~L~~~~~ 200 (246)
T 4e9j_A 139 YGHLAAVPSANALIIS-----DRSANIARIEDVIRQLDQKGS-----------HDYSVINLRYG--WVMDAAEVLNNAMS 200 (246)
T ss_dssp TSEEEEEGGGTEEEEE-----ECHHHHHHHHHHHHHHHTCSC-----------CCEEEEECSSS--CHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCEEEEE-----cCHHHHHHHHHHHHHhccccc-----------cceEEEEecCC--CHHHHHHHHHHHhc
Confidence 4678899999999885 567899999999999886543 24788888753 33556665555554
Q ss_pred CCCchHHHHHHHhCceEEEeC--cEEEEecCCccHHHHHHHHHHH
Q 017169 159 PNSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 201 (376)
Q Consensus 159 ~~GkTkkaIE~LT~~~I~V~G--~TVsIIG~~~~IkiAR~AIe~L 201 (376)
.+|.. ...+..|++.. |+|-|.|+.+.+..+|..|..|
T Consensus 201 ~~~~~-----~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 201 RGQAK-----GAAGAQVIADARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp HTCST-----TCTTCEEEEEGGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCCC-----CCCceEEEEeCCCCeEEEECCHHHHHHHHHHHHHh
Confidence 43321 12346777775 6688999999999998888765
No 74
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=45.24 E-value=32 Score=27.28 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=49.7
Q ss_pred eeeeeeecCcchHHHHHhhhHHHHHHH-hhcceEEEEEcCc------CeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE------GSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 49 essf~~lfPkyRe~yLKe~W~~I~k~L-e~~~l~i~lDl~e------GsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
..+..+.+|+.....|-.-=+..-+.| +++++.|.++-.. ..|+|.. .+..+.+|+++|..|..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-----~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-----YEKNTEAARDAILRIVG 86 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEES-----CHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 345578899988888877777777777 6899999887543 2788865 26799999999998853
No 75
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=41.88 E-value=39 Score=30.91 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=46.4
Q ss_pred hceecCCCCchHHHHHHHhCceEEEeCcE-EEEecCCccHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhhh
Q 017169 153 RQHLVGPNSSTLKALEILTGCYILVQGNT-VAAMGSFKGLKQVRRIVEDCMQNKMHP--VYHIKILMVKKELE 222 (376)
Q Consensus 153 rgRIIG~~GkTkkaIE~LT~~~I~V~G~T-VsIIG~~~~IkiAR~AIe~LI~Gs~Hp--VY~ikelmiKreL~ 222 (376)
..|++|++|..+..|...++|.|.|.=|- |.|=++-.....|-+||.++=.- -|. +=.....+++.++.
T Consensus 147 v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~~~~ai~~~e~~-~~~~~l~~~v~~~l~~~~~ 218 (229)
T 2ba0_A 147 VPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRRKVSIAEEAIYLIEQE-AHTEGLTDRVAEFIKRRKA 218 (229)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESCHHHHHHHHHHHHHHHHC-SCCSSHHHHHHHHHHHHHH
T ss_pred hHHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCCchhHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhcc
Confidence 34799999999999998999999997765 66656555567777788776544 342 33333444444433
No 76
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.91 E-value=70 Score=27.01 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=43.1
Q ss_pred eeecCcchH---HH---HHhhhHHHHHHH-hhcceEEEEEcC---------------------cCeEEEEcCCCCCChhH
Q 017169 53 STLFPQYRE---KY---LQEAWPMVKGAL-KEYGVSCELNLV---------------------EGSMTVSTTRKTRDPYI 104 (376)
Q Consensus 53 ~~lfPkyRe---~y---LKe~W~~I~k~L-e~~~l~i~lDl~---------------------eGsV~V~Tt~kT~DP~~ 104 (376)
.++||.... .+ |-.--+.+-+.| +++|+.|.|.-. .+.|.|.. .|+..
T Consensus 10 kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a----~~~e~ 85 (131)
T 1k1g_A 10 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA----NTMEN 85 (131)
T ss_dssp EEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE----SSHHH
T ss_pred EEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE----CCHHH
Confidence 566775522 23 333445666667 689999988642 56777876 57889
Q ss_pred HHhHHHHHHHHhcC
Q 017169 105 IVKARDLIRLLSRS 118 (376)
Q Consensus 105 IlKArD~IkAiaRG 118 (376)
+.+|.++|..|..-
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
No 77
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=39.49 E-value=72 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.2
Q ss_pred hhhHHHHHHHh-hcceEEEEEcCcCeEEEEc
Q 017169 66 EAWPMVKGALK-EYGVSCELNLVEGSMTVST 95 (376)
Q Consensus 66 e~W~~I~k~Le-~~~l~i~lDl~eGsV~V~T 95 (376)
.|...|.+.|. .-|+.+.+|+.++.++|..
T Consensus 14 ~C~~~i~~~l~~~~gV~v~v~~~~~~~~v~~ 44 (68)
T 3iwl_A 14 GCAEAVSRVLNKLGGVKYDIDLPNKKVCIES 44 (68)
T ss_dssp HHHHHHHHHHHHHCSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCEEEEEe
Confidence 46778899995 4688999999999999985
No 78
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=39.32 E-value=53 Score=28.94 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=24.0
Q ss_pred ceEEEeC--cEEEEecCCccHHHHHHHHHHH
Q 017169 173 CYILVQG--NTVAAMGSFKGLKQVRRIVEDC 201 (376)
Q Consensus 173 ~~I~V~G--~TVsIIG~~~~IkiAR~AIe~L 201 (376)
-.|+++. |++-|-|...+|..+++.|..+
T Consensus 148 g~v~~d~~tN~Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 148 GNVVNYDPSNVIMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp TCEEEEETTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 3677776 7799999999999999998764
No 79
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=38.91 E-value=1.1e+02 Score=27.36 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=25.0
Q ss_pred ceEEEe--CcEEEEecCCccHHHHHHHHHHHh
Q 017169 173 CYILVQ--GNTVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 173 ~~I~V~--G~TVsIIG~~~~IkiAR~AIe~LI 202 (376)
+.|+++ .|++-|-|+...+..+++.|..|=
T Consensus 136 g~v~~d~~~N~Liv~g~~~~i~~i~~li~~lD 167 (241)
T 3ezj_A 136 GNVVNYDPSNVIMLTGRASVVERLTEVIQRVD 167 (241)
T ss_dssp SCEEEEETTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCccEEEEECCHHHHHHHHHHHHHhC
Confidence 567776 477999999999999999998764
No 80
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=38.79 E-value=51 Score=30.11 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=47.4
Q ss_pred hhceecCCCCchHHHHHHHhCceEEEeCcE-EEEec-CCccHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhhh
Q 017169 152 RRQHLVGPNSSTLKALEILTGCYILVQGNT-VAAMG-SFKGLKQVRRIVEDCMQNKMHP--VYHIKILMVKKELE 222 (376)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~~I~V~G~T-VsIIG-~~~~IkiAR~AIe~LI~Gs~Hp--VY~ikelmiKreL~ 222 (376)
...|++|++|..+..|...++|.|.|.-|- |.|=+ +......+-+||.+|=.- .|. +=.....+++.+|.
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~~~e~~-~~~~~l~~~v~~~l~~~~~ 231 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEE-AYTSGLTKRIIKFIEEERR 231 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHC-SCCTTCHHHHHHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEEeCCCEEEEecCCHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhhh
Confidence 456899999998888887889999998866 65543 344577888888888544 341 33334444444443
No 81
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=36.41 E-value=36 Score=27.41 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhCc---------eE
Q 017169 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC---------YI 175 (376)
Q Consensus 105 IlKArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~---------~I 175 (376)
..=++++..|++.| +++..+.|+.||+.++. -+.- ..| -.-|++.|+++ .+..++.+..+ .|
T Consensus 7 ~~~v~~~~~a~~~g-D~~~l~~l~a~Dv~~~~--~g~~----~~~-p~~g~~~G~~a-v~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T 3dm8_A 7 WRFSRALHRALNDR-QTEELATIIDDNIDWAI--YGPI----DMF-PFFGARQGKAA-VLEVCRQIADSVRIYRYHRESV 77 (143)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHEEEEEEEEE--ESCT----TTC-TTCEEEESHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CHHHHHHhcCCCeEEEe--cCCC----CcC-CCCccccCHHH-HHHHHHHHHHhcCcceEEEEEE
Confidence 44466788999987 67889999999976654 1210 000 01245566554 33344444332 36
Q ss_pred EEeCcEEEEecCCc
Q 017169 176 LVQGNTVAAMGSFK 189 (376)
Q Consensus 176 ~V~G~TVsIIG~~~ 189 (376)
++.|++|+++|.+.
T Consensus 78 ~~~gd~v~v~~~~~ 91 (143)
T 3dm8_A 78 MLGIDSAASMVRYS 91 (143)
T ss_dssp EECSSEEEEEEEEE
T ss_pred EEcCCeEEEEEEEE
Confidence 67899998887765
No 82
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=34.24 E-value=95 Score=27.82 Aligned_cols=112 Identities=10% Similarity=0.170 Sum_probs=71.3
Q ss_pred HHHHHHHhh-cceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCch
Q 017169 69 PMVKGALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147 (376)
Q Consensus 69 ~~I~k~Le~-~~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke 147 (376)
..+...+.. .+..+..|..++++.|+ ..|..+.+++++|+.|-.- .+...++|.|..- +-+
T Consensus 124 ~~L~~l~~~~~~g~v~~d~~~N~Liv~-----g~~~~i~~i~~li~~lD~~-----------~~~~~~v~~L~~a--~A~ 185 (241)
T 3ezj_A 124 PILRQMIDSAGSGNVVNYDPSNVIMLT-----GRASVVERLTEVIQRVDHA-----------GNRTEEVIPLDNA--SAS 185 (241)
T ss_dssp HHHHHHHHHHCSSCEEEEETTTEEEEE-----EEHHHHHHHHHHHHHHHHH-----------TTCEEEEEECSSS--CHH
T ss_pred HHHHHHhCcCCcceEEEcCCccEEEEE-----CCHHHHHHHHHHHHHhCcC-----------CCCceEEEEEecC--CHH
Confidence 334444432 22467788889999885 5678899999999988652 1346788888753 345
Q ss_pred hhhhhhceecCCCCchHHHHHHHhCceEEEeC--cEEEEecCCccHHHHHHHHHHH
Q 017169 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 201 (376)
Q Consensus 148 ~f~RrrgRIIG~~GkTkkaIE~LT~~~I~V~G--~TVsIIG~~~~IkiAR~AIe~L 201 (376)
.+...-..+.|..|... -...+..|++.. |++-|.|+.+.+..+|..|..|
T Consensus 186 dla~~L~~~~~~~~~~~---~~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~L 238 (241)
T 3ezj_A 186 EIARVLESLTKNSGENQ---PATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRL 238 (241)
T ss_dssp HHHHHHHTTC----------------CEEEETTTTEEEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccCC---CCCCceEEEEcCCcCeEEEECCHHHHHHHHHHHHHh
Confidence 67777777776543210 012346788886 5588899999999998888764
No 83
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=31.91 E-value=23 Score=27.43 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHh---------CceEEE
Q 017169 107 KARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT---------GCYILV 177 (376)
Q Consensus 107 KArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT---------~~~I~V 177 (376)
..+++..|+++| .++.++.+|.||+..++. +. ..+.|+.+ .+..++.+. =-.|+.
T Consensus 5 ~v~~~~~a~~~g-D~~~~~~~ladDv~w~~~--g~------------~~~~G~~~-~~~~~~~~~~~~~~~~~~i~~~i~ 68 (112)
T 3f14_A 5 THYSIAQHFSSG-DFPAVYACFNDIIEWNII--GN------------QVVKGKAD-VIDFCNKMLPEMKGAVLTNDNVIQ 68 (112)
T ss_dssp HHHHHHHHHHTT-CGGGTGGGEEEEEEEEET--TT------------EEEESHHH-HHHHHHHHHHHHHTSEEEEEEEEE
T ss_pred HHHHHHHHHHcC-CHHHHHHhcCCceEEEEc--CC------------ccEecHHH-HHHHHHHHHhhcCCcEEEEEEEEE
Confidence 467899999976 678899999999765432 11 13444433 233343322 224677
Q ss_pred eCcEEEEecCCc
Q 017169 178 QGNTVAAMGSFK 189 (376)
Q Consensus 178 ~G~TVsIIG~~~ 189 (376)
.|++|++.|.+.
T Consensus 69 ~Gd~Vvv~~~~~ 80 (112)
T 3f14_A 69 NENQIVIEGKCR 80 (112)
T ss_dssp CSSEEEEEEEEE
T ss_pred eCCEEEEEEEEE
Confidence 899999887654
No 84
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.85 E-value=1.2e+02 Score=20.54 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhh-cce-EEEEEcCcCeEEEEcCCCCCChhHHHh
Q 017169 66 EAWPMVKGALKE-YGV-SCELNLVEGSMTVSTTRKTRDPYIIVK 107 (376)
Q Consensus 66 e~W~~I~k~Le~-~~l-~i~lDl~eGsV~V~Tt~kT~DP~~IlK 107 (376)
.|-..|.+.|.. -|+ .+.+|+.++.++|.. ....++..|..
T Consensus 15 ~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~~~i~~ 57 (69)
T 4a4j_A 15 SCASSIERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTD 57 (69)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEETTTTEEEEEE-CTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecCCEEEEEE-CCCCCHHHHHH
Confidence 466778888953 566 489999999999986 34456555444
No 85
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=31.01 E-value=1.9e+02 Score=23.91 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=33.5
Q ss_pred EEEeccccccCchhhhhhhceecCCCCchHHHHHHHhC--ceEEEeCcEEEEecCCccHHHHHHHHHHHh
Q 017169 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTG--CYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202 (376)
Q Consensus 135 dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~--~~I~V~G~TVsIIG~~~~IkiAR~AIe~LI 202 (376)
-.|+|..+ +.+...+.+| +...+++.+|+.+.. ..+.| ++|.+=|--++...+...+..|-
T Consensus 58 v~isld~~--~~~~~~~~~g---~~~~~i~~~i~~l~~~g~~v~i--~~~v~~~~n~n~~~~~~~~~~~~ 120 (182)
T 3can_A 58 LLIDLKSM--DSTVHQTFCD---VPNELILKNIRRVAEADFPYYI--RIPLIEGVNADEKNIKLSAEFLA 120 (182)
T ss_dssp EEEECCCS--CHHHHHHHHS---SCSHHHHHHHHHHHHTTCCEEE--EEEECBTTTCSHHHHHHHHHHHH
T ss_pred EEEECCCC--CHHHHHHHhC---CCHHHHHHHHHHHHhCCCeEEE--EEEEECCCCCCHHHHHHHHHHHH
Confidence 34566554 3455555665 235678888888754 33333 33333343356666666555544
No 86
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=28.22 E-value=1.4e+02 Score=20.03 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=30.9
Q ss_pred hhhHHHHHHHhhcce-EEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHh-cCCCh
Q 017169 66 EAWPMVKGALKEYGV-SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS-RSVPA 121 (376)
Q Consensus 66 e~W~~I~k~Le~~~l-~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAia-RGF~~ 121 (376)
.+...|.+.|...|+ .+.+|+..+.++|.. |+. .+++.+|. .||.+
T Consensus 14 ~C~~~i~~~l~~~gv~~~~v~~~~~~~~v~~-----~~~-----~~i~~~i~~~Gy~~ 61 (67)
T 2kyz_A 14 HCKMRISKALEELGVKNYEVSVEEKKVVVET-----ENL-----DSVLKKLEEIDYPV 61 (67)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTTTEEEEEC-----SCH-----HHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCEEEEEE-----CCH-----HHHHHHHHHcCCce
Confidence 456678888843377 689999999999954 332 45556654 36653
No 87
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=28.16 E-value=46 Score=26.12 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=44.2
Q ss_pred HhHHHHHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHH----hC-----ceEE
Q 017169 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEIL----TG-----CYIL 176 (376)
Q Consensus 106 lKArD~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~L----T~-----~~I~ 176 (376)
.-++.+..|+..| +++....||.+|+.++.- ..+ . .-|++.|+.+-....++.+ .+ ..++
T Consensus 16 ~~v~~~~~a~~~g-D~~~~~~l~a~D~~~~~~--~~~-----p---~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3ec9_A 16 QIVADHYAASDRH-DPAAMMADIAPAIEWTEM--AGF-----P---CAGTYRSADEIVRNVFRRLGEEWDGYTFKLDALH 84 (140)
T ss_dssp HHHHHHHHHHHTT-CHHHHHTTEEEEEEEEEC--TTS-----T---TCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCC-CHHHHHHhcCCCeEEEEc--CCC-----c---cceEEcCHHHHHHHHHHHHHhhCCcceeEEEEEE
Confidence 3356788999887 789999999999765442 110 0 1245555554322223222 22 3345
Q ss_pred EeCcEEEEecCCcc
Q 017169 177 VQGNTVAAMGSFKG 190 (376)
Q Consensus 177 V~G~TVsIIG~~~~ 190 (376)
+.|++|.+.|.+.+
T Consensus 85 ~~gd~v~v~~~~~~ 98 (140)
T 3ec9_A 85 DAGDTVIGVGRYSG 98 (140)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EcCCEEEEEEEEEE
Confidence 67899888877655
No 88
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=27.51 E-value=58 Score=26.29 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=45.6
Q ss_pred CChhHHHhHHH----HHHHHhcCCChHHHHhhhccCceeEEEeccccccCchhhhhhhceecCCCCchHHHHHHHhC---
Q 017169 100 RDPYIIVKARD----LIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTG--- 172 (376)
Q Consensus 100 ~DP~~IlKArD----~IkAiaRGF~~EqAlkLLeDDi~~dIIdI~~~v~nke~f~RrrgRIIG~~GkTkkaIE~LT~--- 172 (376)
.++-.+.-+++ |..|++.| .++..+.||-||+.+++ +-+. ..|++.|+.+- ...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~f~~A~~~g-D~~~l~~lla~D~v~~~-pg~~----------~~g~~~G~~~v-~~~~~~~~~~~~ 72 (134)
T 3dmc_A 6 YSDNTLKVAHQGFEFFTQGLATG-EWQKFLDMLTEDFTFWF-PMGE----------FHGLNVGKERA-KEFFTYVSESFH 72 (134)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHS-CCHHHHTTEEEEEEEEE-SSGG----------GBEEEESHHHH-HHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHcCCCEEEEe-cCCC----------CCccchhHHHH-HHHHHHHHHhhc
Confidence 45556666666 55555666 56889999999987753 2111 44566666542 223333221
Q ss_pred -------c-eEEEeCcEEEEecCCc
Q 017169 173 -------C-YILVQGNTVAAMGSFK 189 (376)
Q Consensus 173 -------~-~I~V~G~TVsIIG~~~ 189 (376)
. .++++|.+|.+.+...
T Consensus 73 ~~~~~~~v~~~~~~G~~vvve~~~~ 97 (134)
T 3dmc_A 73 TGIQISSLDRVTSNETTVVFEFRDE 97 (134)
T ss_dssp TCEEEEEEEEEEECSSEEEEEEEEE
T ss_pred CCceeEEEEEEEecCCEEEEEEEEE
Confidence 2 3677889988766543
No 89
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.35 E-value=1.2e+02 Score=20.94 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.3
Q ss_pred hhHHHHHHHh-hcce-EEEEEcCcCeEEEEcCCCCCChhHHHhH
Q 017169 67 AWPMVKGALK-EYGV-SCELNLVEGSMTVSTTRKTRDPYIIVKA 108 (376)
Q Consensus 67 ~W~~I~k~Le-~~~l-~i~lDl~eGsV~V~Tt~kT~DP~~IlKA 108 (376)
|=..|.+.|. .-|+ .+.+|+..+.++|.......++..|..+
T Consensus 16 C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~ 59 (74)
T 3dxs_X 16 CSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEE 59 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHH
Confidence 4456788885 3576 5899999999999765444555555444
No 90
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=27.27 E-value=2.8e+02 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CceEEEeC--cEEEEecCCccHHHHHHHHHHH
Q 017169 172 GCYILVQG--NTVAAMGSFKGLKQVRRIVEDC 201 (376)
Q Consensus 172 ~~~I~V~G--~TVsIIG~~~~IkiAR~AIe~L 201 (376)
+|.+.+.+ |++-|-|+...|..++.+|..|
T Consensus 118 ~~~v~~d~~tn~l~Vsg~p~~v~~v~~~i~~L 149 (156)
T 3gr5_A 118 SCNVRKITTFNSIEVRGVPECIKYITSLSESL 149 (156)
T ss_dssp TEEEEECSSTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCEEEEEcCHHHHHHHHHHHHHH
Confidence 37888876 6699999999999999998865
No 91
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=31.11 E-value=15 Score=30.25 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred EeCcE--EEEecCCccHHHHHHHHHHHhc
Q 017169 177 VQGNT--VAAMGSFKGLKQVRRIVEDCMQ 203 (376)
Q Consensus 177 V~G~T--VsIIG~~~~IkiAR~AIe~LI~ 203 (376)
++|++ |.+.|+|.....|+.|+..|-.
T Consensus 58 rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 58 RNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 46765 8899999999999999999863
No 92
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=22.74 E-value=1.5e+02 Score=24.96 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCCCchHHHHHHHhCceEEEeCc------------EEEEe-c-CCccHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhhh
Q 017169 158 GPNSSTLKALEILTGCYILVQGN------------TVAAM-G-SFKGLKQVRRIVEDCMQNKMHP-VYHIKILMVKKELE 222 (376)
Q Consensus 158 G~~GkTkkaIE~LT~~~I~V~G~------------TVsII-G-~~~~IkiAR~AIe~LI~Gs~Hp-VY~ikelmiKreL~ 222 (376)
|..++....++.+.||.++|-|. -|.++ | ....|..|-..+...+.|.++| +-..|..-...+..
T Consensus 53 g~~~~~~~~~~~l~g~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~p~wl~k~~~~~~~~~~~ 132 (145)
T 1p90_A 53 LAEDKNAWRVEQIQDCQVLYVVSIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPPWLAKLVGVSAEERVR 132 (145)
T ss_dssp GCSSHHHHHHHHTTTCSEEEESBCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCCCHHHHHHC---------
T ss_pred CccchHHHHHHHHCCCCEEEECCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCChHHHHHHHhhccccccc
Confidence 44455666788889999999865 13333 3 2466777777777788886656 33333211111222
Q ss_pred cCcccccccccc
Q 017169 223 KDPALANENWDR 234 (376)
Q Consensus 223 kd~~l~~e~W~r 234 (376)
=+..+..+.|-|
T Consensus 133 ~~~~~~~~~~~~ 144 (145)
T 1p90_A 133 FSVSDDEDEAAR 144 (145)
T ss_dssp ------------
T ss_pred hhHHhhhhhhhc
Confidence 244445566654
No 93
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=22.11 E-value=8.1 Score=41.67 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=14.9
Q ss_pred hhhceecCCCCchHHHHHHHhCceEEEeCc-EEEEecCC-ccHHHHHHHHHHH
Q 017169 151 KRRQHLVGPNSSTLKALEILTGCYILVQGN-TVAAMGSF-KGLKQVRRIVEDC 201 (376)
Q Consensus 151 RrrgRIIG~~GkTkkaIE~LT~~~I~V~G~-TVsIIG~~-~~IkiAR~AIe~L 201 (376)
..++.+||++|++.+.|..-||+.|.|.+. +|+|.+.- ..++.|++.|..+
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~i 659 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGI 659 (757)
T ss_dssp --------------CTTCCCCCSCC--------CCCBSSHHHHCC--------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHHh
Confidence 357899999999999998889999999974 46665432 2233454444444
No 94
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.67 E-value=30 Score=31.97 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=21.1
Q ss_pred hhhceecCCCCchHHHH--------HHHhCceEEE
Q 017169 151 KRRQHLVGPNSSTLKAL--------EILTGCYILV 177 (376)
Q Consensus 151 RrrgRIIG~~GkTkkaI--------E~LT~~~I~V 177 (376)
..++-|||++|++++.| |.+.||.|.+
T Consensus 250 ~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 250 NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35788999999988766 6677777765
No 95
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.73 E-value=2.2e+02 Score=22.73 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred eeeeecCcchHHHHHhhhHHHHHHH-hhc-ceEEEEEcCcCeEEEEcCCCCCChhHHHhHHHHHHHHhc
Q 017169 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (376)
Q Consensus 51 sf~~lfPkyRe~yLKe~W~~I~k~L-e~~-~l~i~lDl~eGsV~V~Tt~kT~DP~~IlKArD~IkAiaR 117 (376)
+-.+.+|+.--.+|-.-=+..-+.| +++ ++.+.+.-.++.|+|+. .+..+.+|+..|.++..
T Consensus 28 t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G-----~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 28 VSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEG-----PTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp EEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEEC-----CHHHHHHHHHHHHHHHH
Confidence 3458899999999999988888888 444 88888877788899975 47899999999988764
Done!