Query 017170
Match_columns 376
No_of_seqs 203 out of 554
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 3.1E-68 6.6E-73 489.0 0.3 139 215-368 77-215 (215)
2 PF00564 PB1: PB1 domain; Int 97.4 0.00032 7E-09 54.8 5.3 68 258-352 3-71 (84)
3 smart00666 PB1 PB1 domain. Pho 97.1 0.0023 4.9E-08 50.0 7.2 66 258-351 3-69 (81)
4 cd06398 PB1_Joka2 The PB1 doma 96.8 0.0036 7.9E-08 52.1 6.4 68 258-352 2-72 (91)
5 cd05992 PB1 The PB1 domain is 96.8 0.0069 1.5E-07 47.0 7.2 66 258-351 2-69 (81)
6 cd06407 PB1_NLP A PB1 domain i 96.7 0.0053 1.1E-07 50.2 6.4 56 258-340 2-57 (82)
7 cd06396 PB1_NBR1 The PB1 domai 96.2 0.013 2.9E-07 48.3 6.0 53 259-339 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 95.8 0.049 1.1E-06 45.2 7.4 74 258-356 2-79 (81)
9 cd06404 PB1_aPKC PB1 domain is 95.1 0.056 1.2E-06 45.0 5.7 56 259-341 3-58 (83)
10 cd06409 PB1_MUG70 The MUG70 pr 94.9 0.055 1.2E-06 45.1 5.1 52 266-340 7-60 (86)
11 cd06402 PB1_p62 The PB1 domain 94.8 0.097 2.1E-06 43.7 6.5 60 257-341 1-65 (87)
12 cd06403 PB1_Par6 The PB1 domai 94.8 0.069 1.5E-06 44.2 5.4 68 259-352 3-71 (80)
13 cd06397 PB1_UP1 Uncharacterize 93.6 0.18 4E-06 41.9 5.6 66 259-352 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 90.2 0.85 1.8E-05 38.2 5.9 65 257-351 3-68 (86)
15 cd06399 PB1_P40 The PB1 domain 77.7 4 8.7E-05 34.8 4.4 37 272-336 22-58 (92)
16 PF10411 DsbC_N: Disulfide bon 45.6 16 0.00035 27.7 2.0 17 325-341 34-50 (57)
17 cd06406 PB1_P67 A PB1 domain i 42.5 92 0.002 26.0 6.1 66 257-351 3-69 (80)
18 cd06395 PB1_Map2k5 PB1 domain 33.6 77 0.0017 27.0 4.3 50 264-340 9-58 (91)
19 KOG3938 RGS-GAIP interacting p 31.1 74 0.0016 32.5 4.5 74 264-365 62-142 (334)
20 PF09840 DUF2067: Uncharacteri 28.4 25 0.00053 33.2 0.7 37 314-354 90-126 (190)
21 PF11576 DUF3236: Protein of u 25.1 26 0.00056 32.4 0.2 16 66-81 94-109 (154)
22 KOG3606 Cell polarity protein 23.5 1.1E+02 0.0023 31.4 4.2 78 256-361 18-101 (358)
23 COG3286 Uncharacterized protei 23.4 36 0.00077 32.9 0.8 37 314-354 93-129 (204)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=3.1e-68 Score=489.01 Aligned_cols=139 Identities=70% Similarity=1.156 Sum_probs=6.0
Q ss_pred CCCCcccCCccCCCCcccccccccccccCCCCCCCCCCCCCccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccc
Q 017170 215 MSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCF 294 (376)
Q Consensus 215 ~~~pa~kaqVVGWPPVrS~RKN~l~~~~k~~~e~~~~~~~~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~ 294 (376)
...|++++|+||||||++||||.+.. .+....++||||+|||+||||||||++|+||++|+.+|++||.+|
T Consensus 77 ~~~p~~~~~~vgwpp~~s~r~n~~~~---------~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~ 147 (215)
T PF02309_consen 77 SSPPASKAQVVGWPPVRSFRKNSLSE---------KQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCF 147 (215)
T ss_dssp ---------BTTBS----S-------------------------------------------------------------
T ss_pred CCCCcccccccCCCcccccccccccc---------cccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCC
Confidence 45577889999999999999998771 112234799999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccCCChhHHHhhceeeEEecCCcccCcchhH
Q 017170 295 TIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRA 368 (376)
Q Consensus 295 ~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~ 368 (376)
.|.+|++++ +++..+.+++++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+||+
T Consensus 148 ~i~~~~~~~------~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~ 215 (215)
T PF02309_consen 148 SIEQCGSHG------LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA 215 (215)
T ss_dssp --------------------------------------------------------------------------
T ss_pred Ccccccccc------ccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence 999998744 34566677788899999999999999999999999999999999999999999999996
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.39 E-value=0.00032 Score=54.77 Aligned_cols=68 Identities=24% Similarity=0.458 Sum_probs=54.9
Q ss_pred ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170 258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML 337 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 337 (376)
-|||+..|. +=|.+.+..--+|++|...+++.|... ...+.|.|.|.||||..
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence 489999997 333588888889999999999999751 24799999999999998
Q ss_pred ccC-CChhHHHhhcee
Q 017170 338 VGD-VPWEMFIDSCKR 352 (376)
Q Consensus 338 VGD-VPWemFv~svKR 352 (376)
+-+ .=|++.+..+++
T Consensus 56 i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 56 ISSDEDLQEAIEQAKE 71 (84)
T ss_dssp ESSHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHh
Confidence 875 568888887753
No 3
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.10 E-value=0.0023 Score=50.04 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=52.2
Q ss_pred ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170 258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML 337 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 337 (376)
=|||+-.|. -|.+-+..--+|++|...+.+.|.. ....+.|.|+|.||||..
T Consensus 3 ~vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~ 54 (81)
T smart00666 3 DVKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVS 54 (81)
T ss_pred cEEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEE
Confidence 378887554 6777788889999999999999974 113689999999999987
Q ss_pred ccC-CChhHHHhhce
Q 017170 338 VGD-VPWEMFIDSCK 351 (376)
Q Consensus 338 VGD-VPWemFv~svK 351 (376)
+.+ .=|.+.+..++
T Consensus 55 l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 55 LTSDEDLEEAIEEYD 69 (81)
T ss_pred ecCHHHHHHHHHHHH
Confidence 665 57777777666
No 4
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=96.81 E-value=0.0036 Score=52.13 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=52.6
Q ss_pred ceEEeecCCccCceecCC---CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCC
Q 017170 258 FIKVSMDGAPYLRKVDLR---TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGD 334 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~---~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD 334 (376)
-|||.-+|.-+=-++++. ..-+|++|...+.+.|... ...+|+|.|.|.|||
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-------------------------~~~~~~l~Y~Dedgd 56 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-------------------------PDADLSLTYTDEDGD 56 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-------------------------CCCcEEEEEECCCCC
Confidence 489999998555555554 4679999999999999751 125799999999999
Q ss_pred eEEccCCChhHHHhhcee
Q 017170 335 WMLVGDVPWEMFIDSCKR 352 (376)
Q Consensus 335 wMLVGDVPWemFv~svKR 352 (376)
|..+-+. +.|...+.+
T Consensus 57 ~V~l~~D--~DL~~a~~~ 72 (91)
T cd06398 57 VVTLVDD--NDLTDAIQY 72 (91)
T ss_pred EEEEccH--HHHHHHHHH
Confidence 9988776 666655554
No 5
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.75 E-value=0.0069 Score=46.99 Aligned_cols=66 Identities=23% Similarity=0.411 Sum_probs=51.6
Q ss_pred ceEEeecCCccCceecCC-CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170 258 FIKVSMDGAPYLRKVDLR-TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM 336 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~-~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 336 (376)
-|||+-.|. -|.+=+. ..-+|++|...|.+.|... ...+.+.|.|.||||.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v 53 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV 53 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence 378888875 4445455 8889999999999999741 0368999999999999
Q ss_pred EccC-CChhHHHhhce
Q 017170 337 LVGD-VPWEMFIDSCK 351 (376)
Q Consensus 337 LVGD-VPWemFv~svK 351 (376)
.+.+ .=|++.++.++
T Consensus 54 ~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 54 TISSDEDLEEAIEEAR 69 (81)
T ss_pred EeCCHHHHHHHHHHHh
Confidence 8887 57777777765
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.68 E-value=0.0053 Score=50.15 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=44.4
Q ss_pred ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170 258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML 337 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML 337 (376)
=|||...|. -+.+-|..--+|++|...+.++|..- +.+.|.|-|.|.||||.+
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------------------~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------------------DMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------------------CCCeeEEEEECCCCCeEE
Confidence 389999887 45566666669999999999999740 125799999999999987
Q ss_pred ccC
Q 017170 338 VGD 340 (376)
Q Consensus 338 VGD 340 (376)
+--
T Consensus 55 lts 57 (82)
T cd06407 55 LTC 57 (82)
T ss_pred eec
Confidence 643
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.19 E-value=0.013 Score=48.28 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=45.5
Q ss_pred eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170 259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV 338 (376)
Q Consensus 259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 338 (376)
|||.-.|.-+--+++-+..-+|++|...+.++|.. + .+.|.|-|.||||.++
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l 54 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV 54 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence 78999998777777777788999999999999974 1 4789999999999876
Q ss_pred c
Q 017170 339 G 339 (376)
Q Consensus 339 G 339 (376)
-
T Consensus 55 s 55 (81)
T cd06396 55 N 55 (81)
T ss_pred E
Confidence 4
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=95.75 E-value=0.049 Score=45.16 Aligned_cols=74 Identities=18% Similarity=0.409 Sum_probs=50.5
Q ss_pred ceEEeecCCccCceecCCCCC-ChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170 258 FIKVSMDGAPYLRKVDLRTYT-NYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM 336 (376)
Q Consensus 258 fVKV~MDG~pIGRKVDL~~y~-sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 336 (376)
-+|+.-.|. -|++=+..-. +|.+|...+.+.|.... .....+.+.|.|.|||+.
T Consensus 2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~~-----------------------~~~~~flIKYkD~dGDlV 56 (81)
T cd06401 2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGKL-----------------------GSSDDVLIKYKDEDGDLI 56 (81)
T ss_pred eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcccc-----------------------CCcccEEEEEECCCCCEE
Confidence 367777666 4665555433 99999999999997410 112479999999999999
Q ss_pred EccCC---ChhHHHhhceeeEEe
Q 017170 337 LVGDV---PWEMFIDSCKRLKIM 356 (376)
Q Consensus 337 LVGDV---PWemFv~svKRLrIm 356 (376)
=+.+- -|..=+...+||+|.
T Consensus 57 TIts~~dL~~A~~~~~~~~l~~~ 79 (81)
T cd06401 57 TIFDSSDLSFAIQCSRILKLTLF 79 (81)
T ss_pred EeccHHHHHHHHhcCcceEEEEe
Confidence 99875 343334444555553
No 9
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=95.07 E-value=0.056 Score=45.00 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=44.6
Q ss_pred eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170 259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV 338 (376)
Q Consensus 259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 338 (376)
||++-.|.-.--.+|. .-+|++|.+.+.+||.. ..+..|++.|.|.|||---+
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti 55 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI 55 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence 7999999855555665 77899999999999974 12357999999999998766
Q ss_pred cCC
Q 017170 339 GDV 341 (376)
Q Consensus 339 GDV 341 (376)
...
T Consensus 56 SS~ 58 (83)
T cd06404 56 SSQ 58 (83)
T ss_pred cCH
Confidence 543
No 10
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.85 E-value=0.055 Score=45.07 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=38.4
Q ss_pred CccCceecCC--CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccC
Q 017170 266 APYLRKVDLR--TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD 340 (376)
Q Consensus 266 ~pIGRKVDL~--~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD 340 (376)
.|-||.+=++ ...+|.+|..++.+-|+.-. . ....|.|.|.|.||||.|.--
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~----------------------~-~~~~~~L~YlDDEgD~VllT~ 60 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD----------------------F-ETHLYALSYVDDEGDIVLITS 60 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc----------------------c-cCCcccEEEEcCCCCEEEEec
Confidence 4567765544 37899999999999997510 0 024699999999999988653
No 11
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.84 E-value=0.097 Score=43.71 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=43.9
Q ss_pred cceEEeecC---CccCcee--cCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcC
Q 017170 257 LFIKVSMDG---APYLRKV--DLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDK 331 (376)
Q Consensus 257 ~fVKV~MDG---~pIGRKV--DL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDk 331 (376)
+.||.+..| .+=-|++ |=....+|++|...+.++|.. +.+..|+|.|.|.
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De 55 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE 55 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence 357777776 2233444 446667999999999999963 1235799999999
Q ss_pred CCCeEEccCC
Q 017170 332 DGDWMLVGDV 341 (376)
Q Consensus 332 EGDwMLVGDV 341 (376)
|||..-+...
T Consensus 56 eGDlvtIssd 65 (87)
T cd06402 56 EGDLVAFSSD 65 (87)
T ss_pred CCCEEeecCH
Confidence 9999776653
No 12
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=94.78 E-value=0.069 Score=44.24 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=48.8
Q ss_pred eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170 259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV 338 (376)
Q Consensus 259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 338 (376)
||..-|..=-=-.+|.....+|++++.-|++||... ...|+|-|.|.+||.+-+
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~--------------------------~~~f~i~Y~D~~gDLLPI 56 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP--------------------------NVDFLIGYTDPHGDLLPI 56 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC--------------------------CCcEEEEEeCCCCCEecc
Confidence 666666662222455555699999999999999751 247999999999999977
Q ss_pred c-CCChhHHHhhcee
Q 017170 339 G-DVPWEMFIDSCKR 352 (376)
Q Consensus 339 G-DVPWemFv~svKR 352 (376)
- |+-+..=++++++
T Consensus 57 nNDdNf~kAlssa~p 71 (80)
T cd06403 57 NNDDNFLKALSSANP 71 (80)
T ss_pred cCcHHHHHHHHcCCC
Confidence 5 4455555667763
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.59 E-value=0.18 Score=41.94 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=50.4
Q ss_pred eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170 259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV 338 (376)
Q Consensus 259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV 338 (376)
-||+-+|. .|++-...-=+|..|.+.|+.+|.... ..+.|||.|.|||..=+
T Consensus 3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl 54 (82)
T cd06397 3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL 54 (82)
T ss_pred EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence 48888887 899988888999999999999998621 13789999999998755
Q ss_pred cC-CChhHHHhhcee
Q 017170 339 GD-VPWEMFIDSCKR 352 (376)
Q Consensus 339 GD-VPWemFv~svKR 352 (376)
-| .=.+.|..-..|
T Consensus 55 ssd~eL~d~~~~~~~ 69 (82)
T cd06397 55 SSNKELQDFYRLSHR 69 (82)
T ss_pred cchHHHHHHHHhccc
Confidence 44 555555553333
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.21 E-value=0.85 Score=38.19 Aligned_cols=65 Identities=20% Similarity=0.402 Sum_probs=50.4
Q ss_pred cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170 257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM 336 (376)
Q Consensus 257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 336 (376)
.-|||+-.|. .|-|-+..--+|++|...+.++|.. ...++|-|.|. ||..
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i 52 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence 4589999898 6677777777899999999999974 13689999999 9998
Q ss_pred EccCC-ChhHHHhhce
Q 017170 337 LVGDV-PWEMFIDSCK 351 (376)
Q Consensus 337 LVGDV-PWemFv~svK 351 (376)
-++|- =.++-+.++|
T Consensus 53 ti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 53 TMGDQDDLDMAIDTAR 68 (86)
T ss_pred cccCHHHHHHHHHHHH
Confidence 88874 3344455554
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=77.75 E-value=4 Score=34.77 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=30.7
Q ss_pred ecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170 272 VDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM 336 (376)
Q Consensus 272 VDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 336 (376)
=||+..-.|.+|..-..+-|.. .+-.|-|.|.|||..
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~----------------------------~dIaLNYrD~EGDLI 58 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLI 58 (92)
T ss_pred cccccCccHHHHHHHHHHHhch----------------------------hheeeeeecCCCCEE
Confidence 3788888999999999998864 145789999999984
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=45.65 E-value=16 Score=27.71 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.5
Q ss_pred EEEEEcCCCCeEEccCC
Q 017170 325 VLTYEDKDGDWMLVGDV 341 (376)
Q Consensus 325 vLtYEDkEGDwMLVGDV 341 (376)
-+.|.|.||+++++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 47899999999999974
No 17
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=42.54 E-value=92 Score=25.97 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=49.0
Q ss_pred cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCC-Ce
Q 017170 257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG-DW 335 (376)
Q Consensus 257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG-Dw 335 (376)
.-|||+-.+ .=.|-...--+|.+|...|.+-+... +.+-+|-|.|.+. +.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~--------------------------~e~i~LsYkde~s~~~ 53 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELP--------------------------AEHITLSYKSEASGED 53 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------chhcEEEeccCCCCCc
Confidence 458999997 33455566678999999999888641 2346799998874 44
Q ss_pred EEccCCChhHHHhhce
Q 017170 336 MLVGDVPWEMFIDSCK 351 (376)
Q Consensus 336 MLVGDVPWemFv~svK 351 (376)
..++|-=|+.-.+.||
T Consensus 54 v~l~d~dle~aws~~~ 69 (80)
T cd06406 54 VILSDTNMEDVWSQAK 69 (80)
T ss_pred cCcChHHHHHHHHhhc
Confidence 4559998998888887
No 18
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=33.55 E-value=77 Score=27.02 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=35.0
Q ss_pred cCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccC
Q 017170 264 DGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD 340 (376)
Q Consensus 264 DG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD 340 (376)
+|..+--.||...+=+|.++..++.+....-+ --.+-|||.|||+.-|--
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT---------------------------~tAFeYEDE~gDRITVRS 58 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEAT---------------------------TTAFEYEDEDGDRITVRS 58 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhccccc---------------------------ccceeeccccCCeeEecc
Confidence 34446667777777889999888877764311 123669999999987743
No 19
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.14 E-value=74 Score=32.46 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=51.6
Q ss_pred cCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEc--CCCCeEEccCC
Q 017170 264 DGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYED--KDGDWMLVGDV 341 (376)
Q Consensus 264 DG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYED--kEGDwMLVGDV 341 (376)
.|.|.|| +..|++-+||++.+.+-|.+.. . |. .-+|.-+ -|=+.||-|-.
T Consensus 62 HGSptg~---Ie~fsnv~ELY~kIAe~F~Is~-----------~---------dI-----lfcTlNshKvDM~~llgGqi 113 (334)
T KOG3938|consen 62 HGSPTGR---IEGFSNVRELYQKIAEAFDISP-----------D---------DI-----LFCTLNSHKVDMKRLLGGQI 113 (334)
T ss_pred cCCccce---ecccccHHHHHHHHHHHhcCCc-----------c---------ce-----EEEecCCCcccHHHHhcCcc
Confidence 4667777 4568999999999999998621 0 00 0122222 23445888888
Q ss_pred ChhHHHh-----hceeeEEecCCcccCcc
Q 017170 342 PWEMFID-----SCKRLKIMKGSDAIGLA 365 (376)
Q Consensus 342 PWemFv~-----svKRLrImk~Sea~gla 365 (376)
-.+.|+= -.|-++|+|+.++.||.
T Consensus 114 gleDfiFAHvkGq~kEv~v~KsedalGlT 142 (334)
T KOG3938|consen 114 GLEDFIFAHVKGQAKEVEVVKSEDALGLT 142 (334)
T ss_pred ChhhhhhhhhcCcceeEEEEecccccceE
Confidence 8888863 56789999999998884
No 20
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=28.41 E-value=25 Score=33.19 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=30.6
Q ss_pred hhhcccCCCceEEEEEcCCCCeEEccCCChhHHHhhceeeE
Q 017170 314 KLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLK 354 (376)
Q Consensus 314 ~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 354 (376)
-|.+.|.-.+|..-|.+. .|..|.||+.+++.++||.
T Consensus 90 ~L~~~L~~~G~~ae~~~~----~i~T~a~~eev~~l~~~Ls 126 (190)
T PF09840_consen 90 LLVDALKLLGYKAEYRED----VIKTDAPLEEVVELAERLS 126 (190)
T ss_pred HHHHHHHhCCCeeEEeCC----eEEecCCHHHHHHHHHHHH
Confidence 356666667899999766 8899999999999999873
No 21
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=25.10 E-value=26 Score=32.43 Aligned_cols=16 Identities=50% Similarity=0.733 Sum_probs=9.5
Q ss_pred ccccchhccCCCCCCC
Q 017170 66 NLKATELRLGLPGSES 81 (376)
Q Consensus 66 nlkaTELRLGLPGs~s 81 (376)
||=-..=|||.|||.|
T Consensus 94 DlvIARGRLGvPGSGS 109 (154)
T PF11576_consen 94 DLVIARGRLGVPGSGS 109 (154)
T ss_dssp SEEEEEEE-SSTTS-E
T ss_pred cEEEEcccccCCCCcc
Confidence 3334455999999985
No 22
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=23.51 E-value=1.1e+02 Score=31.42 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=56.1
Q ss_pred ccceEEeecCCccCceecCCC--CCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCC
Q 017170 256 ALFIKVSMDGAPYLRKVDLRT--YTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG 333 (376)
Q Consensus 256 ~~fVKV~MDG~pIGRKVDL~~--y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG 333 (376)
.+-||-..|-. =|..-|.. -.+|++.+.-|+++-.+. +.++.|-|.|.-|
T Consensus 18 ~veVKSKFdaE--fRRfsl~r~~~~~f~~F~~Lv~~~H~i~--------------------------nvdvllgY~d~hg 69 (358)
T KOG3606|consen 18 TVEVKSKFDAE--FRRFSLPRHSASSFDEFYSLVEHLHHIP--------------------------NVDVLLGYADTHG 69 (358)
T ss_pred eEEeeccccch--hheecccccCcccHHHHHHHHHHHhcCC--------------------------CceEEEEEecCCC
Confidence 45566555554 45555544 468999999999888651 2468899999999
Q ss_pred CeEEcc-CCChhHHHhhce---eeEEecCCcc
Q 017170 334 DWMLVG-DVPWEMFIDSCK---RLKIMKGSDA 361 (376)
Q Consensus 334 DwMLVG-DVPWemFv~svK---RLrImk~Sea 361 (376)
|.+-+- |.-+.--+++++ ||.|-|..||
T Consensus 70 DLLPinNDDn~~ka~~sa~PlLR~~iQkr~ea 101 (358)
T KOG3606|consen 70 DLLPINNDDNLHKALSSARPLLRLLIQKREEA 101 (358)
T ss_pred ceecccCchhHHHHhhccCchhhhhhhhhhhh
Confidence 999764 566666677777 7888888776
No 23
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.41 E-value=36 Score=32.87 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=30.4
Q ss_pred hhhcccCCCceEEEEEcCCCCeEEccCCChhHHHhhceeeE
Q 017170 314 KLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLK 354 (376)
Q Consensus 314 ~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLr 354 (376)
-|.|.|..-+|.+-|.+.+ |=-+.||..|++.|++|.
T Consensus 93 vl~daLk~~GyrVevr~~~----l~T~ap~~ev~E~vreLs 129 (204)
T COG3286 93 VLIDALKLLGYRVEVRGGE----LKTNAPWSEVVELVRELS 129 (204)
T ss_pred HHHHHHHhCCceEEeeCce----eecCCCHHHHHHHHHHHH
Confidence 4667777778999997554 888999999999999863
Done!