Query 017170
Match_columns 376
No_of_seqs 203 out of 554
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 95.9 0.015 5.1E-07 47.4 6.2 59 255-340 5-63 (89)
2 1wmh_B Partitioning defective- 95.6 0.019 6.4E-07 46.8 5.7 72 254-351 4-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 94.6 0.042 1.4E-06 45.8 5.2 61 256-341 5-80 (102)
4 2ktr_A Sequestosome-1; autopha 93.6 0.097 3.3E-06 44.7 5.5 62 255-341 19-95 (117)
5 1q1o_A Cell division control p 89.7 0.83 2.8E-05 37.9 6.7 76 255-351 4-86 (98)
6 2bkf_A Zinc-finger protein NBR 80.7 3.3 0.00011 33.8 5.9 56 257-340 7-62 (87)
7 1oey_J P40-PHOX, neutrophil cy 77.8 3.2 0.00011 35.0 5.1 41 273-341 28-68 (107)
8 1wj6_A KIAA0049 protein, RSGI 76.8 3.2 0.00011 34.7 4.9 65 256-350 14-78 (101)
9 1pqs_A Cell division control p 75.6 2.8 9.5E-05 33.1 4.0 57 274-351 8-65 (77)
10 1oey_A P67-PHOX, neutrophil cy 71.6 11 0.00036 30.3 6.5 70 257-355 6-78 (83)
11 1e8p_A Endoglucanase, dockerin 48.0 5.1 0.00018 29.3 0.7 13 325-337 20-32 (46)
12 3o27_A Putative uncharacterize 29.4 29 0.00098 27.2 2.3 22 317-338 38-59 (68)
13 3brc_A Conserved protein of un 26.3 16 0.00056 32.5 0.4 16 66-81 95-110 (156)
14 2j4m_A Endoglucanase 45A; dock 22.7 18 0.00062 30.2 0.0 13 325-337 21-33 (100)
15 3c8c_A Methyl-accepting chemot 20.5 33 0.0011 28.3 1.2 35 320-354 203-238 (240)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.89 E-value=0.015 Score=47.39 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=45.2
Q ss_pred CccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCC
Q 017170 255 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGD 334 (376)
Q Consensus 255 ~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD 334 (376)
+.+=|||+-.|.-+ .+.+...-+|++|...|.++|.. ..+..++|.|.|.|||
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD 57 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD 57 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence 45789999999844 44444467999999999999974 1235799999999999
Q ss_pred eEEccC
Q 017170 335 WMLVGD 340 (376)
Q Consensus 335 wMLVGD 340 (376)
+.-+-.
T Consensus 58 ~itisS 63 (89)
T 1vd2_A 58 PCTVSS 63 (89)
T ss_dssp CEECCS
T ss_pred cccccC
Confidence 865543
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.59 E-value=0.019 Score=46.78 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCC
Q 017170 254 PGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG 333 (376)
Q Consensus 254 ~~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG 333 (376)
.+.+-||..-|..--=-.+|-....+|++|...|+++|.. ....|++.|.|.||
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~dG 57 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHG 57 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTS
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCCC
Confidence 3567788888888333345555678999999999999974 12469999999999
Q ss_pred CeEEccCC-ChhHHHhhce
Q 017170 334 DWMLVGDV-PWEMFIDSCK 351 (376)
Q Consensus 334 DwMLVGDV-PWemFv~svK 351 (376)
|++-.-+. =..+=+.++|
T Consensus 58 DLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 58 DLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp CEEECCSHHHHHHHTTSSS
T ss_pred CEeeecCHHHHHHHHHhCC
Confidence 99987765 3344455666
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.63 E-value=0.042 Score=45.76 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=44.2
Q ss_pred ccceEEeecCC----ccCceecCCC-----------CCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccC
Q 017170 256 ALFIKVSMDGA----PYLRKVDLRT-----------YTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLH 320 (376)
Q Consensus 256 ~~fVKV~MDG~----pIGRKVDL~~-----------y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~ 320 (376)
++-||++..|. .=-|++=|.. ..+|++|...+.++|.. +.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~ 59 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR 59 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence 56788888752 2335544431 24899999999999963 12
Q ss_pred CCceEEEEEcCCCCeEEccCC
Q 017170 321 GSEYVLTYEDKDGDWMLVGDV 341 (376)
Q Consensus 321 gseyvLtYEDkEGDwMLVGDV 341 (376)
+..|+|.|.|.|||+.-+-+.
T Consensus 60 ~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 60 PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp SSCEEEEEECTTCCEEEECSH
T ss_pred CCcEEEEEECCCCCEEEecCH
Confidence 457999999999999877664
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.65 E-value=0.097 Score=44.71 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=44.8
Q ss_pred CccceEEeecCC----ccCceecCC-----------CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhccc
Q 017170 255 GALFIKVSMDGA----PYLRKVDLR-----------TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLL 319 (376)
Q Consensus 255 ~~~fVKV~MDG~----pIGRKVDL~-----------~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll 319 (376)
..+-||++..|. .==|++=|. .-.+|++|...+.++|.. +
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L 73 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L 73 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence 468899999752 123544443 245999999999999963 1
Q ss_pred CCCceEEEEEcCCCCeEEccCC
Q 017170 320 HGSEYVLTYEDKDGDWMLVGDV 341 (376)
Q Consensus 320 ~gseyvLtYEDkEGDwMLVGDV 341 (376)
.+..|+|.|.|.|||+.-+-..
T Consensus 74 ~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp CSSCEEEEEECTTCCEEEECSH
T ss_pred CCCcEEEEEECCCCCEEEecCH
Confidence 2357999999999998877654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.68 E-value=0.83 Score=37.90 Aligned_cols=76 Identities=17% Similarity=0.399 Sum_probs=54.2
Q ss_pred CccceEEeecCCc----c--CceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEE
Q 017170 255 GALFIKVSMDGAP----Y--LRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTY 328 (376)
Q Consensus 255 ~~~fVKV~MDG~p----I--GRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtY 328 (376)
+++-|||+-+... + .|.|=+..--+|++|...+.+-|..+.. . +. .....|-|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----~--------------~i--~~~~klkY 62 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----N--------------NI--SPITKIKY 62 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----S--------------CC--CCCCCEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----c--------------cc--cceeEEEE
Confidence 3467888877431 2 2666677788899999999999975210 0 00 12367999
Q ss_pred EcCCCCeEEccC-CChhHHHhhce
Q 017170 329 EDKDGDWMLVGD-VPWEMFIDSCK 351 (376)
Q Consensus 329 EDkEGDwMLVGD-VPWemFv~svK 351 (376)
+|.|||+...++ .=|+|-++++|
T Consensus 63 kDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 63 QDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EcCCCCEEEEcCHHHHHHHHHHHH
Confidence 999999987776 58999888763
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=80.71 E-value=3.3 Score=33.80 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=42.5
Q ss_pred cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170 257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM 336 (376)
Q Consensus 257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM 336 (376)
.-+||.--|...=--|.-..--++++|-..+..+|+. +.++|.|-|.|||-.
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------------------~~~~ikY~DEenD~v 58 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV 58 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEEcCCCCEE
Confidence 4578888888443346444577899999999999963 358999999999987
Q ss_pred EccC
Q 017170 337 LVGD 340 (376)
Q Consensus 337 LVGD 340 (376)
-|=-
T Consensus 59 ~i~S 62 (87)
T 2bkf_A 59 SINS 62 (87)
T ss_dssp EECS
T ss_pred EEec
Confidence 6543
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=77.79 E-value=3.2 Score=35.01 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=33.3
Q ss_pred cCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccCC
Q 017170 273 DLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDV 341 (376)
Q Consensus 273 DL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGDV 341 (376)
||...-.|.+|..-..+-|.. .+-+|-|.|.|||+.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~----------------------------~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR----------------------------EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC----------------------------SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc----------------------------cceeeeeecCCCCEEEEcch
Confidence 677888999999999999963 24679999999999655443
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.80 E-value=3.2 Score=34.72 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=47.8
Q ss_pred ccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCe
Q 017170 256 ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDW 335 (376)
Q Consensus 256 ~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDw 335 (376)
..-+||.--|...=--|.-..--++++|-..|..+|+. +.++|.|-|.|||-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L----------------------------~~~~IkY~DEenD~ 65 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEE 65 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC----------------------------SSBCCEEECTTSCE
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEecCCCCE
Confidence 35678999998544447555567899999999999964 25789999999998
Q ss_pred EEccCCChhHHHhhc
Q 017170 336 MLVGDVPWEMFIDSC 350 (376)
Q Consensus 336 MLVGDVPWemFv~sv 350 (376)
.-|=- +.+|-+.+
T Consensus 66 V~i~S--q~E~eEAl 78 (101)
T 1wj6_A 66 VSINS--QGEYEEAL 78 (101)
T ss_dssp ECCCS--HHHHHHHH
T ss_pred EEEec--HHHHHHHH
Confidence 76643 56554443
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=75.56 E-value=2.8 Score=33.09 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccC-CChhHHHhhce
Q 017170 274 LRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD-VPWEMFIDSCK 351 (376)
Q Consensus 274 L~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~svK 351 (376)
...--+|++|...+.+-|..+ -+.+. .....|-|+|.|||+...++ .=|+|=+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-----~~~~~----------------~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-----HNNNI----------------SPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-----TSSCS----------------CSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-----ccccc----------------cceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 344557999999999999742 00000 12467999999999977665 68999888764
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.64 E-value=11 Score=30.32 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=53.7
Q ss_pred cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEc-CCCCe
Q 017170 257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYED-KDGDW 335 (376)
Q Consensus 257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYED-kEGDw 335 (376)
+=|||+-. +.-.|....=-+|.+|...|.+-+... +.+-+|-|.| .+|.|
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--------------------------~~~~~LsYk~~~s~~~ 56 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--------------------------LEHTKLSYRPRDSNEL 56 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--------------------------GGGCCEEECCTTCSSC
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--------------------------cceeEEEeeCCCCCCe
Confidence 45777766 677788888889999999999888641 1234589999 68899
Q ss_pred EEccCCChhHHHhhce--eeEE
Q 017170 336 MLVGDVPWEMFIDSCK--RLKI 355 (376)
Q Consensus 336 MLVGDVPWemFv~svK--RLrI 355 (376)
++.+|.=|+.-...|+ ||++
T Consensus 57 vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 57 VPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EECCTTTHHHHHTTCBTTEEEE
T ss_pred eccChHHHHHHHHhccCCcEEE
Confidence 9999999998877755 5554
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=47.96 E-value=5.1 Score=29.28 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 017170 325 VLTYEDKDGDWML 337 (376)
Q Consensus 325 vLtYEDkEGDwML 337 (376)
.|+|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4999999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=29.43 E-value=29 Score=27.19 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=17.8
Q ss_pred cccCCCceEEEEEcCCCCeEEc
Q 017170 317 DLLHGSEYVLTYEDKDGDWMLV 338 (376)
Q Consensus 317 dll~gseyvLtYEDkEGDwMLV 338 (376)
++-.|.++.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3444679999999999998875
No 13
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.28 E-value=16 Score=32.50 Aligned_cols=16 Identities=50% Similarity=0.733 Sum_probs=11.5
Q ss_pred ccccchhccCCCCCCC
Q 017170 66 NLKATELRLGLPGSES 81 (376)
Q Consensus 66 nlkaTELRLGLPGs~s 81 (376)
||=-..=|||.|||.|
T Consensus 95 DlvIARGRLGvPGSGS 110 (156)
T 3brc_A 95 DLVIARGRLGVPGSGS 110 (156)
T ss_dssp SEEEEEEECSSTTSCE
T ss_pred cEEEEcccccCCCCcc
Confidence 4444455999999985
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=22.68 E-value=18 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.0
Q ss_pred EEEEEcCCCCeEE
Q 017170 325 VLTYEDKDGDWML 337 (376)
Q Consensus 325 vLtYEDkEGDwML 337 (376)
.|+|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 4889999999953
No 15
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=20.52 E-value=33 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCCceEEEEEcC-CCCeEEccCCChhHHHhhceeeE
Q 017170 320 HGSEYVLTYEDK-DGDWMLVGDVPWEMFIDSCKRLK 354 (376)
Q Consensus 320 ~gseyvLtYEDk-EGDwMLVGDVPWemFv~svKRLr 354 (376)
+|.+|.+.|.-- ..+|.+|.-+|...+...+++|+
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 456788888754 45999999999999998887765
Done!