Query 017173
Match_columns 376
No_of_seqs 160 out of 1947
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03215 ascorbic acid mannose 100.0 2.8E-37 6.1E-42 282.0 24.2 287 34-349 2-353 (373)
2 TIGR01640 F_box_assoc_1 F-box 99.8 2.1E-18 4.6E-23 152.7 20.9 213 116-343 1-229 (230)
3 PHA02713 hypothetical protein; 99.3 1.3E-10 2.8E-15 115.5 21.1 229 92-351 274-542 (557)
4 PF03478 DUF295: Protein of un 99.2 1.2E-11 2.5E-16 82.5 4.6 50 292-341 1-54 (54)
5 KOG4441 Proteins containing BT 99.2 1E-08 2.3E-13 101.8 23.5 237 90-355 301-558 (571)
6 PHA02790 Kelch-like protein; P 99.0 7.5E-08 1.6E-12 94.4 20.4 184 91-295 288-477 (480)
7 PHA03098 kelch-like protein; P 99.0 8E-08 1.7E-12 95.8 20.7 229 95-351 269-520 (534)
8 PLN02153 epithiospecifier prot 98.9 5.3E-07 1.2E-11 84.6 23.0 210 118-350 30-292 (341)
9 PHA02713 hypothetical protein; 98.8 1.6E-07 3.4E-12 93.6 18.0 187 92-300 322-545 (557)
10 PHA02790 Kelch-like protein; P 98.8 4.2E-07 9E-12 89.2 20.3 196 119-349 270-477 (480)
11 PLN02193 nitrile-specifier pro 98.8 1.9E-06 4E-11 84.4 23.7 236 95-350 142-418 (470)
12 KOG4441 Proteins containing BT 98.8 2.9E-07 6.3E-12 91.6 18.2 182 91-297 350-555 (571)
13 PHA03098 kelch-like protein; P 98.8 4E-07 8.6E-12 90.9 18.9 191 91-300 312-523 (534)
14 PF12937 F-box-like: F-box-lik 98.7 2.1E-09 4.5E-14 69.6 0.1 38 36-73 1-38 (47)
15 PLN02153 epithiospecifier prot 98.7 4.1E-06 9E-11 78.6 22.1 192 91-298 51-294 (341)
16 TIGR03547 muta_rot_YjhT mutatr 98.7 1.4E-05 3.1E-10 75.1 23.9 165 118-300 15-239 (346)
17 PLN02193 nitrile-specifier pro 98.6 6.1E-06 1.3E-10 80.8 20.9 194 92-300 195-422 (470)
18 TIGR03548 mutarot_permut cycli 98.5 2.5E-05 5.4E-10 72.7 21.8 148 132-299 40-205 (323)
19 PRK14131 N-acetylneuraminic ac 98.5 2E-05 4.4E-10 74.9 19.8 211 118-350 36-328 (376)
20 PF08268 FBA_3: F-box associat 98.5 1.2E-06 2.6E-11 70.0 9.6 80 211-297 1-89 (129)
21 PF00646 F-box: F-box domain; 98.4 1.4E-08 3.1E-13 66.0 -1.9 39 35-73 2-40 (48)
22 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00011 2.4E-09 69.0 22.0 218 91-329 30-329 (346)
23 smart00256 FBOX A Receptor for 98.4 6.6E-08 1.4E-12 60.4 -0.4 36 39-74 1-36 (41)
24 TIGR03548 mutarot_permut cycli 98.4 5.7E-05 1.2E-09 70.4 19.1 170 92-275 90-312 (323)
25 PRK14131 N-acetylneuraminic ac 98.3 0.00073 1.6E-08 64.3 25.4 236 91-347 51-373 (376)
26 PF07734 FBA_1: F-box associat 97.9 9.6E-05 2.1E-09 61.6 9.6 82 211-299 1-94 (164)
27 KOG2120 SCF ubiquitin ligase, 97.9 3.2E-06 7E-11 74.7 0.6 69 4-74 67-136 (419)
28 KOG4693 Uncharacterized conser 97.5 0.0031 6.7E-08 55.1 13.6 166 180-352 44-234 (392)
29 KOG1230 Protein containing rep 97.2 0.0052 1.1E-07 56.9 11.9 131 210-355 80-228 (521)
30 KOG1230 Protein containing rep 97.2 0.0088 1.9E-07 55.4 13.1 106 181-297 99-224 (521)
31 KOG0379 Kelch repeat-containin 97.1 0.037 8E-07 54.4 16.9 194 92-299 90-312 (482)
32 KOG0379 Kelch repeat-containin 96.8 0.078 1.7E-06 52.2 16.8 160 181-357 89-264 (482)
33 KOG4693 Uncharacterized conser 96.7 0.079 1.7E-06 46.5 14.0 175 92-276 107-312 (392)
34 COG4257 Vgb Streptogramin lyas 96.0 0.49 1.1E-05 42.0 15.0 123 113-246 192-318 (353)
35 COG2706 3-carboxymuconate cycl 94.5 3.8 8.3E-05 37.7 17.3 170 181-368 168-344 (346)
36 PF01344 Kelch_1: Kelch motif; 94.0 0.28 6.1E-06 30.9 6.1 40 260-299 5-47 (47)
37 PF13360 PQQ_2: PQQ-like domai 93.1 5.4 0.00012 34.7 24.1 218 91-346 4-234 (238)
38 KOG0274 Cdc4 and related F-box 93.1 3.5 7.5E-05 41.2 14.7 42 33-74 105-146 (537)
39 PF13964 Kelch_6: Kelch motif 92.9 0.22 4.7E-06 32.0 4.2 40 261-300 6-48 (50)
40 KOG2997 F-box protein FBX9 [Ge 92.3 0.035 7.6E-07 49.9 -0.4 40 36-75 107-151 (366)
41 PF07646 Kelch_2: Kelch motif; 92.0 0.45 9.7E-06 30.4 4.8 39 261-299 6-49 (49)
42 KOG0281 Beta-TrCP (transducin 91.2 0.05 1.1E-06 49.4 -0.5 37 37-73 76-116 (499)
43 PF13964 Kelch_6: Kelch motif 91.1 0.54 1.2E-05 30.1 4.5 34 208-241 4-44 (50)
44 PF13570 PQQ_3: PQQ-like domai 90.2 0.67 1.5E-05 28.1 4.1 27 208-234 14-40 (40)
45 PF01344 Kelch_1: Kelch motif; 88.5 1.2 2.5E-05 27.9 4.5 34 208-241 4-44 (47)
46 PRK11138 outer membrane biogen 88.4 24 0.00052 33.7 18.6 27 210-236 289-315 (394)
47 PRK11138 outer membrane biogen 87.9 25 0.00055 33.5 19.9 104 209-346 250-357 (394)
48 PF07646 Kelch_2: Kelch motif; 86.4 2 4.4E-05 27.3 4.7 34 208-241 4-46 (49)
49 PF13418 Kelch_4: Galactose ox 86.1 2.1 4.5E-05 27.1 4.7 34 266-299 12-48 (49)
50 TIGR01640 F_box_assoc_1 F-box 86.1 11 0.00023 33.0 10.7 118 213-347 3-131 (230)
51 PF10282 Lactonase: Lactonase, 85.1 33 0.00072 32.1 16.3 131 207-350 193-332 (345)
52 KOG2502 Tub family proteins [G 84.3 0.5 1.1E-05 43.3 1.3 40 34-73 43-90 (355)
53 smart00564 PQQ beta-propeller 82.9 3.1 6.7E-05 23.6 4.0 26 211-236 2-27 (33)
54 PF10282 Lactonase: Lactonase, 81.9 45 0.00097 31.2 18.0 167 115-296 149-332 (345)
55 TIGR03300 assembly_YfgL outer 80.2 53 0.0012 30.9 20.3 28 209-236 235-262 (377)
56 PF13418 Kelch_4: Galactose ox 78.9 4.4 9.5E-05 25.6 4.0 31 120-150 12-48 (49)
57 KOG1273 WD40 repeat protein [G 77.9 54 0.0012 30.1 11.6 56 87-142 42-98 (405)
58 PF02897 Peptidase_S9_N: Proly 77.5 69 0.0015 30.7 20.4 161 165-350 238-412 (414)
59 KOG2055 WD40 repeat protein [G 76.7 48 0.001 31.9 11.4 148 75-235 221-376 (514)
60 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.6 56 0.0012 32.7 13.0 122 209-345 63-192 (527)
61 PF13415 Kelch_3: Galactose ox 76.6 4.3 9.3E-05 25.7 3.5 34 267-300 2-39 (49)
62 PF07893 DUF1668: Protein of u 76.5 46 0.001 31.2 11.7 121 214-349 75-214 (342)
63 PRK04043 tolB translocation pr 76.1 78 0.0017 30.6 14.0 104 225-349 213-316 (419)
64 COG3055 Uncharacterized protei 75.9 18 0.00039 33.7 8.3 107 181-299 114-266 (381)
65 TIGR03032 conserved hypothetic 75.8 66 0.0014 29.7 11.8 132 206-351 103-240 (335)
66 KOG4341 F-box protein containi 74.7 0.95 2.1E-05 42.7 -0.0 36 38-73 74-109 (483)
67 PF07893 DUF1668: Protein of u 72.4 86 0.0019 29.4 12.9 115 119-240 75-214 (342)
68 PF02191 OLF: Olfactomedin-lik 71.3 52 0.0011 29.3 10.1 81 208-289 71-157 (250)
69 TIGR03300 assembly_YfgL outer 71.2 93 0.002 29.3 25.0 132 91-236 76-211 (377)
70 COG2706 3-carboxymuconate cycl 69.8 96 0.0021 28.9 17.4 164 118-297 153-332 (346)
71 cd00216 PQQ_DH Dehydrogenases 69.4 89 0.0019 30.9 12.4 32 208-239 54-87 (488)
72 PLN02772 guanylate kinase 64.6 47 0.001 31.7 8.8 73 207-287 26-107 (398)
73 COG4257 Vgb Streptogramin lyas 62.8 29 0.00063 31.2 6.5 61 91-151 255-317 (353)
74 PF13919 ASXH: Asx homology do 61.7 2.9 6.2E-05 33.5 0.2 25 32-56 40-64 (138)
75 TIGR03032 conserved hypothetic 61.6 49 0.0011 30.5 8.0 58 206-276 203-261 (335)
76 KOG4152 Host cell transcriptio 61.5 1.7E+02 0.0037 28.9 11.8 88 181-274 231-340 (830)
77 PF01011 PQQ: PQQ enzyme repea 60.9 17 0.00037 21.6 3.5 21 216-236 1-21 (38)
78 KOG0294 WD40 repeat-containing 60.7 1.4E+02 0.003 27.5 14.1 133 132-290 150-285 (362)
79 PRK04043 tolB translocation pr 59.3 1.7E+02 0.0038 28.2 20.0 184 131-348 213-406 (419)
80 PF03022 MRJP: Major royal jel 58.0 31 0.00068 31.4 6.3 83 262-349 7-103 (287)
81 PF08450 SGL: SMP-30/Gluconola 57.9 1.3E+02 0.0028 26.3 20.4 150 119-293 10-171 (246)
82 PF06433 Me-amine-dh_H: Methyl 57.8 1.6E+02 0.0036 27.5 16.0 129 208-348 186-326 (342)
83 PF13013 F-box-like_2: F-box-l 56.9 3.4 7.5E-05 31.5 -0.1 29 36-64 22-50 (109)
84 smart00612 Kelch Kelch domain. 56.6 16 0.00035 22.2 3.1 21 280-300 15-35 (47)
85 smart00284 OLF Olfactomedin-li 56.4 1.5E+02 0.0032 26.5 10.7 82 208-290 76-163 (255)
86 PF12768 Rax2: Cortical protei 55.9 1.6E+02 0.0035 26.8 12.1 108 180-300 16-135 (281)
87 KOG0289 mRNA splicing factor [ 55.1 2E+02 0.0044 27.7 11.9 66 224-302 410-476 (506)
88 KOG0296 Angio-associated migra 54.2 1.9E+02 0.0042 27.1 13.9 25 119-143 200-224 (399)
89 KOG4152 Host cell transcriptio 53.0 2.4E+02 0.0052 27.9 13.9 132 191-330 186-341 (830)
90 PF09372 PRANC: PRANC domain; 51.6 7.7 0.00017 28.8 1.1 24 34-57 70-93 (97)
91 KOG0291 WD40-repeat-containing 49.7 1.7E+02 0.0037 30.3 10.1 55 90-144 35-90 (893)
92 PF03178 CPSF_A: CPSF A subuni 48.8 2.2E+02 0.0047 26.1 16.1 148 132-297 3-168 (321)
93 PF08450 SGL: SMP-30/Gluconola 44.4 2.1E+02 0.0046 24.8 21.3 179 91-292 23-217 (246)
94 KOG2437 Muskelin [Signal trans 44.0 37 0.0008 33.2 4.5 108 182-295 290-419 (723)
95 KOG1188 WD40 repeat protein [G 41.8 3E+02 0.0064 25.7 16.5 70 215-286 222-297 (376)
96 KOG0315 G-protein beta subunit 41.1 2.6E+02 0.0057 24.9 21.1 149 78-244 8-165 (311)
97 KOG0289 mRNA splicing factor [ 40.6 3.5E+02 0.0075 26.2 13.0 90 115-216 395-486 (506)
98 TIGR03074 PQQ_membr_DH membran 40.5 4.7E+02 0.01 27.7 14.6 31 208-238 187-219 (764)
99 PRK05137 tolB translocation pr 40.1 3.5E+02 0.0076 26.1 25.4 200 118-350 210-420 (435)
100 COG3055 Uncharacterized protei 37.1 69 0.0015 30.0 5.0 55 189-246 69-134 (381)
101 COG4946 Uncharacterized protei 36.9 4.2E+02 0.0091 26.1 15.9 135 91-240 288-438 (668)
102 KOG4649 PQQ (pyrrolo-quinoline 36.2 3.3E+02 0.0071 24.6 13.8 90 132-234 34-124 (354)
103 PF15150 PMAIP1: Phorbol-12-my 35.7 8.8 0.00019 24.2 -0.6 17 1-17 1-17 (54)
104 PF13859 BNR_3: BNR repeat-lik 35.4 1.7E+02 0.0036 27.1 7.4 64 227-299 151-217 (310)
105 PF08268 FBA_3: F-box associat 35.1 2.1E+02 0.0046 22.1 9.6 60 180-240 20-87 (129)
106 PF07569 Hira: TUP1-like enhan 34.5 3E+02 0.0065 23.9 8.5 84 211-298 18-105 (219)
107 KOG1445 Tumor-specific antigen 34.0 5.3E+02 0.012 26.4 11.0 61 215-283 731-795 (1012)
108 PF08309 LVIVD: LVIVD repeat; 34.0 1.1E+02 0.0025 18.7 4.3 28 208-235 4-31 (42)
109 KOG0293 WD40 repeat-containing 33.6 4.4E+02 0.0096 25.4 14.5 162 132-329 292-469 (519)
110 TIGR03866 PQQ_ABC_repeats PQQ- 33.4 3.3E+02 0.0072 23.8 25.8 221 90-346 53-283 (300)
111 COG1520 FOG: WD40-like repeat 30.0 4.7E+02 0.01 24.5 10.6 108 120-236 111-220 (370)
112 TIGR02658 TTQ_MADH_Hv methylam 29.9 4.8E+02 0.01 24.6 12.8 105 215-346 12-140 (352)
113 COG5469 Predicted metal-bindin 29.6 19 0.00042 28.4 0.2 24 33-56 116-139 (143)
114 PF07433 DUF1513: Protein of u 29.5 4.5E+02 0.0099 24.2 19.5 73 112-188 7-85 (305)
115 TIGR02276 beta_rpt_yvtn 40-res 28.3 1.2E+02 0.0025 17.7 3.6 24 120-143 3-26 (42)
116 COG4946 Uncharacterized protei 28.1 2.9E+02 0.0063 27.1 7.6 74 260-346 176-260 (668)
117 KOG0321 WD40 repeat-containing 27.9 3.3E+02 0.007 27.7 8.1 82 215-311 64-147 (720)
118 PF05077 DUF678: Protein of un 27.3 21 0.00046 24.7 0.1 12 2-13 5-16 (74)
119 PF09910 DUF2139: Uncharacteri 26.5 5.2E+02 0.011 23.8 11.7 100 132-240 132-238 (339)
120 PRK00178 tolB translocation pr 26.2 5.8E+02 0.013 24.4 20.2 187 132-349 180-370 (430)
121 COG1520 FOG: WD40-like repeat 25.4 5.7E+02 0.012 23.9 12.3 54 182-239 37-94 (370)
122 COG0823 TolB Periplasmic compo 24.9 2.5E+02 0.0055 27.2 7.0 72 266-347 248-319 (425)
123 PHA02875 ankyrin repeat protei 24.9 38 0.00083 32.4 1.4 27 33-59 384-410 (413)
124 PF07762 DUF1618: Protein of u 24.7 3.3E+02 0.0072 21.1 8.2 80 221-300 2-98 (131)
125 PF00397 WW: WW domain; Inter 24.6 1.4E+02 0.003 16.7 4.1 26 120-145 3-28 (31)
126 cd01207 Ena-Vasp Enabled-VASP- 24.3 1.9E+02 0.0041 22.2 4.7 42 132-173 10-51 (111)
127 cd00216 PQQ_DH Dehydrogenases 21.7 5.1E+02 0.011 25.5 8.6 56 210-276 401-458 (488)
128 PF14339 DUF4394: Domain of un 21.3 2.7E+02 0.0059 24.6 5.7 28 213-240 36-63 (236)
129 KOG3545 Olfactomedin and relat 21.1 2.9E+02 0.0063 24.5 5.8 80 208-288 70-155 (249)
130 KOG1408 WD40 repeat protein [F 21.0 9.7E+02 0.021 25.1 10.2 19 131-149 280-299 (1080)
131 PRK11028 6-phosphogluconolacto 20.9 6.4E+02 0.014 22.9 24.9 74 215-298 136-217 (330)
132 PF12458 DUF3686: ATPase invol 20.8 7.8E+02 0.017 23.9 11.7 121 111-237 228-372 (448)
133 PHA02989 ankyrin repeat protei 20.7 43 0.00094 33.1 0.8 24 34-57 457-480 (494)
134 PRK10115 protease 2; Provision 20.6 9.7E+02 0.021 24.9 19.8 120 210-348 274-400 (686)
No 1
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=100.00 E-value=2.8e-37 Score=281.99 Aligned_cols=287 Identities=17% Similarity=0.264 Sum_probs=193.4
Q ss_pred CCCCCccHHHHHHHHhcCCc-ccceehhccccccccCcccc---CCCCCCceEEEEeec-C---cE--------EEEEcC
Q 017173 34 HDWSELPAELLELIMCHLTL-EDNVHASVVCKKWHAPAISV---RVVNQSPWLMYFPKF-G---NL--------YEFYDP 97 (376)
Q Consensus 34 ~~Ws~LP~dll~~Il~rLp~-~~l~r~r~VCk~Wrs~~~~~---~~~~~~P~l~~~~~~-~---~~--------~~~~~~ 97 (376)
.+|++||+|||+.|..|||. .|+.|||+||++||+++... .+..+.||+++.+-. . .. ..+ +
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l 79 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAF--L 79 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccce--e
Confidence 57999999999999999984 69999999999999999763 222334777654311 0 00 111 1
Q ss_pred CCCceEEeecCCCCCCeEEEecCCeEEEEeCC--CCeEEEEcCCCcceecCCCcccc---ee------EEEe-ecC----
Q 017173 98 AQRKTYSLELPELYGSRVCYTKDSWLLLYRPR--THRVFFFNPFTRDMIKLPRFELT---YQ------IVAF-SCA---- 161 (376)
Q Consensus 98 ~~~~~~~~~lp~~~~~~~~~s~~G~ll~~~~~--~~~~~l~NP~T~~~~~LP~~~~~---~~------~~~l-~~~---- 161 (376)
+....++++++. .++.|||+..+++ ...+.|+||+++..+.+|+.... +. ...+ ...
T Consensus 80 s~~~~~r~~~~~-------~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~ 152 (373)
T PLN03215 80 SRAAFFRVTLSS-------SPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRE 152 (373)
T ss_pred eeeEEEEeecCC-------CCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccc
Confidence 122345555442 2569999987654 35799999999999888864221 00 0111 110
Q ss_pred --------------CCCC-CeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCCe
Q 017173 162 --------------PTSS-SCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTGW 226 (376)
Q Consensus 162 --------------p~~~-~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~ 226 (376)
..++ ++.|+++.... .+.+++ +++|+.++.. ...+.|+++++|+||+++..|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g----~l~~w~--~~~Wt~l~~~------~~~~~DIi~~kGkfYAvD~~G~ 220 (373)
T PLN03215 153 TRPGYQRSALVKVKEGDNHRDGVLGIGRDG----KINYWD--GNVLKALKQM------GYHFSDIIVHKGQTYALDSIGI 220 (373)
T ss_pred cccceeEEEEEEeecCCCcceEEEEEeecC----cEeeec--CCeeeEccCC------CceeeEEEEECCEEEEEcCCCe
Confidence 0011 23344443211 233444 5899988742 2568999999999999999999
Q ss_pred EEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecC----------------CCcEEEEEecCCc
Q 017173 227 LGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS----------------ENPIIFKLDQSKM 290 (376)
Q Consensus 227 i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~----------------~~~~V~~ld~~~~ 290 (376)
+.++|.+-+ ..+..++. .+......+....+|||++|+|+||.+... ..+.||++|.+..
T Consensus 221 l~~i~~~l~---i~~v~~~i-~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~ 296 (373)
T PLN03215 221 VYWINSDLE---FSRFGTSL-DENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELA 296 (373)
T ss_pred EEEEecCCc---eeeeccee-cccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCC
Confidence 999995422 21111111 000000011134689999999999988531 2389999999999
Q ss_pred cEEEeeccCCcEEEeeCCccc--ccCCCCccccCeEEEcccccCCceEEEEecCCceeecC
Q 017173 291 AWEEMKTLDGLTLFASFLSSQ--SRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPR 349 (376)
Q Consensus 291 ~W~~v~~lg~~~lFlg~~~s~--~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~ 349 (376)
+|+++++|||++||+|.++++ ++++++|+++|||||+++. . ..||+|++++..+.
T Consensus 297 ~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~--~--~~v~~~~dg~~~~~ 353 (373)
T PLN03215 297 KWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT--M--PKVFKLDNGNGSSI 353 (373)
T ss_pred cEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC--c--ceEEECCCCCccce
Confidence 999999999999999988754 5678899999999999863 2 35999999986655
No 2
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.82 E-value=2.1e-18 Score=152.67 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=141.3
Q ss_pred EEecCCeEEEEeCCCCeEEEEcCCCcceecCCCcccc-----eeEEEeecCCCCCCeEEEEEeccC--CCeEEEEEEecC
Q 017173 116 CYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELT-----YQIVAFSCAPTSSSCVVFTVKHIS--PTVVAISTCHPG 188 (376)
Q Consensus 116 ~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~-----~~~~~l~~~p~~~~~~v~~i~~~~--~~~~~~~~y~~~ 188 (376)
+|+|+|+|++... ..++|+||+|++++.||+.+.. .....++.++.+.+|+|+.+.... .....+++|+++
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 3689999977654 4899999999999999876431 113678889988999999886531 123578999999
Q ss_pred CCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCC------eEEEEeCCCCCcee-eeeCCCCCCcccccccccceeE
Q 017173 189 ATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTG------WLGVFDPVKRDWGV-LVVPPPKCPENFFAKNWWKGKF 261 (376)
Q Consensus 189 ~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~------~i~~~D~~~~~~~~-~~~p~p~~~~~~~~~~~~~~~~ 261 (376)
+++|+.+...+.. .......|++||.+||++..+ .|++||+.++.|+. ++.|. .... ......
T Consensus 79 ~~~Wr~~~~~~~~---~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~--~~~~-----~~~~~~ 148 (230)
T TIGR01640 79 SNSWRTIECSPPH---HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPC--GNSD-----SVDYLS 148 (230)
T ss_pred CCCccccccCCCC---ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCc--cccc-----cccceE
Confidence 9999988742211 112233899999999997532 69999999999985 54432 1111 012357
Q ss_pred EEEECCcEEEEEEecC-CCcEEEEEec-CCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEE
Q 017173 262 MVEHKGDILVIYTCCS-ENPIIFKLDQ-SKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISY 339 (376)
Q Consensus 262 Lv~~~G~LllV~~~~~-~~~~V~~ld~-~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy 339 (376)
|++.+|+|.++..... ..++||.|+. +..+|.++.+++...+. +....... ..-+..+-|++.........+..|
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~-~~~~~~~~--~~~~~~g~I~~~~~~~~~~~~~~y 225 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLP-DLVDDNFL--SGFTDKGEIVLCCEDENPFYIFYY 225 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchh-hhhhheeE--eEEeeCCEEEEEeCCCCceEEEEE
Confidence 8999999999988654 5699999975 35679999888742211 11000000 001244566666542112236788
Q ss_pred ecCC
Q 017173 340 SLND 343 (376)
Q Consensus 340 ~l~~ 343 (376)
|.++
T Consensus 226 ~~~~ 229 (230)
T TIGR01640 226 NVGE 229 (230)
T ss_pred eccC
Confidence 8765
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.34 E-value=1.3e-10 Score=115.54 Aligned_cols=229 Identities=12% Similarity=0.113 Sum_probs=149.5
Q ss_pred EEEEcCCCCceEEee-cCCCCCCeEEEecCCeEEEEeCC------CCeEEEEcCCCcceecCCCccccee---EEEeecC
Q 017173 92 YEFYDPAQRKTYSLE-LPELYGSRVCYTKDSWLLLYRPR------THRVFFFNPFTRDMIKLPRFELTYQ---IVAFSCA 161 (376)
Q Consensus 92 ~~~~~~~~~~~~~~~-lp~~~~~~~~~s~~G~ll~~~~~------~~~~~l~NP~T~~~~~LP~~~~~~~---~~~l~~~ 161 (376)
...||+..++|..++ +|........+.-+|-|++.++. .+.+..+||.+++|..+|+++.... .+++.
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~-- 351 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID-- 351 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC--
Confidence 457899999998764 44322222233457777776652 1358899999999999999875432 22222
Q ss_pred CCCCCeEEEEEeccCC--CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC---------------
Q 017173 162 PTSSSCVVFTVKHISP--TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT--------------- 224 (376)
Q Consensus 162 p~~~~~~v~~i~~~~~--~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~--------------- 224 (376)
+ +++++....+ ....++.|++.+++|+.+...+ .+ .....++.++|++|+++..
T Consensus 352 ----g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~~---r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 352 ----D-TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-IA---LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred ----C-EEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-cc---cccccEEEECCEEEEEeCCCcccccccccccccc
Confidence 1 3444332211 1236899999999999876432 22 2344577899999998642
Q ss_pred ---------CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCC---cEEEEEecCC-cc
Q 017173 225 ---------GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSEN---PIIFKLDQSK-MA 291 (376)
Q Consensus 225 ---------~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~---~~V~~ld~~~-~~ 291 (376)
..+.+||+.++.|+.+. +++. +. ....++..+|+|++++...... -.|.+.|+++ .+
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~-~r--------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP-NFWT-GT--------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC-CCCc-cc--------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 24889999999997653 2221 11 2235678899999998754321 2467789998 79
Q ss_pred EEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeecCCC
Q 017173 292 WEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQ 351 (376)
Q Consensus 292 W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~~~ 351 (376)
|+.+.+|+..-...|- ...+|+||.+........+-+||..+++|+...+
T Consensus 493 W~~~~~m~~~r~~~~~----------~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 493 WELITTTESRLSALHT----------ILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred eeEccccCccccccee----------EEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 9999999864332211 2368899998652122245599999999997753
No 4
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=99.23 E-value=1.2e-11 Score=82.50 Aligned_cols=50 Identities=30% Similarity=0.469 Sum_probs=42.2
Q ss_pred EEEeeccCCcEEEeeCCccc--ccCCCCccccCeEEEccc--ccCCceEEEEec
Q 017173 292 WEEMKTLDGLTLFASFLSSQ--SRADLPGIMRNSVYFSKV--RFFGKRCISYSL 341 (376)
Q Consensus 292 W~~v~~lg~~~lFlg~~~s~--~~~~~~g~~~n~Iyf~~~--~~~~~~~~vy~l 341 (376)
|+++++|||++||+|.++++ ++++++|+++|||||+++ ......+.||||
T Consensus 1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEeC
Confidence 99999999999999997755 456789999999999997 224567889987
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.16 E-value=1e-08 Score=101.80 Aligned_cols=237 Identities=12% Similarity=0.135 Sum_probs=155.8
Q ss_pred cEEEEEcCCCCceEEee-cCCCCCCeEEEecCCeEEEEeCCC------CeEEEEcCCCcceecCCCcccceeEEEeecCC
Q 017173 90 NLYEFYDPAQRKTYSLE-LPELYGSRVCYTKDSWLLLYRPRT------HRVFFFNPFTRDMIKLPRFELTYQIVAFSCAP 162 (376)
Q Consensus 90 ~~~~~~~~~~~~~~~~~-lp~~~~~~~~~s~~G~ll~~~~~~------~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p 162 (376)
+....|||..+.|..+. +|.-.....++.-+|.|+..++.. +.+..+||.+++|..+|++...........-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l- 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL- 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-
Confidence 35668999999998764 553222223345678888776543 4588999999999999999764332222110
Q ss_pred CCCCeEEEEEecc--CCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC-------CeEEEEeCC
Q 017173 163 TSSSCVVFTVKHI--SPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT-------GWLGVFDPV 233 (376)
Q Consensus 163 ~~~~~~v~~i~~~--~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------~~i~~~D~~ 233 (376)
...++++... ......++.|++.+++|+.+..... + .....++.++|++|+++.. ..+.+||+.
T Consensus 380 ---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~---r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 380 ---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-R---RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred ---CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-c---eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 1123333221 1223468999999999998875332 2 4567789999999999751 468999999
Q ss_pred CCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCC--cEEEEEecCCccEEEeeccCCcEEEeeCCccc
Q 017173 234 KRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSEN--PIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQ 311 (376)
Q Consensus 234 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~--~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~ 311 (376)
++.|+.+. |++. +. ....++..+|.|++|+...... -.|-+.|.++.+|..+..|....-=.|
T Consensus 453 t~~W~~~~-~M~~-~R--------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g----- 517 (571)
T KOG4441|consen 453 TNTWTLIA-PMNT-RR--------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG----- 517 (571)
T ss_pred CCceeecC-Cccc-cc--------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-----
Confidence 99998752 2221 11 2334677899999999876532 347778999999999987754221000
Q ss_pred ccCCCCccccCeEEEccccc---CCceEEEEecCCceeecCCCCCcc
Q 017173 312 SRADLPGIMRNSVYFSKVRF---FGKRCISYSLNDSRYYPRKQCYDW 355 (376)
Q Consensus 312 ~~~~~~g~~~n~Iyf~~~~~---~~~~~~vy~l~~~~~~~~~~~~~~ 355 (376)
.-..+|.||..-... +.+.+-+||-++++|+...+ ...
T Consensus 518 -----~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~ 558 (571)
T KOG4441|consen 518 -----VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PES 558 (571)
T ss_pred -----EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-ccc
Confidence 112577788775421 23456699999999998765 444
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=98.97 E-value=7.5e-08 Score=94.38 Aligned_cols=184 Identities=9% Similarity=0.056 Sum_probs=118.2
Q ss_pred EEEEEcCCCCceEEee-cCCCCCCeEEEecCCeEEEEeCC--CCeEEEEcCCCcceecCCCcccceeE-EEeecCCCCCC
Q 017173 91 LYEFYDPAQRKTYSLE-LPELYGSRVCYTKDSWLLLYRPR--THRVFFFNPFTRDMIKLPRFELTYQI-VAFSCAPTSSS 166 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~-lp~~~~~~~~~s~~G~ll~~~~~--~~~~~l~NP~T~~~~~LP~~~~~~~~-~~l~~~p~~~~ 166 (376)
....|||..++|..++ +|.........+.+|.|++.++. ...+..+||.+++|..+|+++..... .+...+ +
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~----g 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN----N 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC----C
Confidence 3456899999998764 33212122233568888877653 23578899999999999998753321 111111 1
Q ss_pred eEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCCeEEEEeCCCCCceeeeeCCCC
Q 017173 167 CVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPK 246 (376)
Q Consensus 167 ~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~~~~~~~p~p~ 246 (376)
.++++.........++.|++.+++|+.++..+ .| .....++.++|++|+++. ...+||+.++.|+.+. +++
T Consensus 364 -~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~---r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~-~m~- 434 (480)
T PHA02790 364 -VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP---HYKSCALVFGRRLFLVGR--NAEFYCESSNTWTLID-DPI- 434 (480)
T ss_pred -EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc---cccceEEEECCEEEEECC--ceEEecCCCCcEeEcC-CCC-
Confidence 33333222211235788999999999876432 33 234467789999999974 4788999999998653 222
Q ss_pred CCcccccccccceeEEEEECCcEEEEEEecCCC--cEEEEEecCCccEEEe
Q 017173 247 CPENFFAKNWWKGKFMVEHKGDILVIYTCCSEN--PIIFKLDQSKMAWEEM 295 (376)
Q Consensus 247 ~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~--~~V~~ld~~~~~W~~v 295 (376)
.+. ....++..+|+|++++...... -.|...|.++.+|.-.
T Consensus 435 ~~r--------~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 435 YPR--------DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCc--------cccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 122 2335677899999998754322 2466669999999643
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.96 E-value=8e-08 Score=95.82 Aligned_cols=229 Identities=14% Similarity=0.168 Sum_probs=136.5
Q ss_pred EcCCCCceEEeecCCCCCCeEEEecCCeEEEEeCC------CCeEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeE
Q 017173 95 YDPAQRKTYSLELPELYGSRVCYTKDSWLLLYRPR------THRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCV 168 (376)
Q Consensus 95 ~~~~~~~~~~~~lp~~~~~~~~~s~~G~ll~~~~~------~~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~ 168 (376)
|++..++|..+.-............++.+++.++. .+.+..+||.|++|..+|+++.......... .. + .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~-~-~ 344 (534)
T PHA03098 269 NYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FN-N-R 344 (534)
T ss_pred cchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--EC-C-E
Confidence 55556666654311111110122346666665542 1368899999999999998764322111110 01 1 2
Q ss_pred EEEEeccCC--CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC-------CeEEEEeCCCCCcee
Q 017173 169 VFTVKHISP--TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT-------GWLGVFDPVKRDWGV 239 (376)
Q Consensus 169 v~~i~~~~~--~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------~~i~~~D~~~~~~~~ 239 (376)
++.+..... ....++.|++.+++|+.....+ .| .....++.++|++|+++.. ..+.+||+.++.|+.
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~---r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FP---RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cC---CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 333322111 1235789999999999876432 23 2344567889999998751 358999999999976
Q ss_pred eeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCC-----cEEEEEecCCccEEEeeccCCcEEEeeCCcccccC
Q 017173 240 LVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSEN-----PIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRA 314 (376)
Q Consensus 240 ~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~-----~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~ 314 (376)
+. +.|. +. .....+..+|.|++++...... -.|+..|.++.+|.++..++..- .+.+.
T Consensus 421 ~~-~~p~-~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----~~~~~--- 483 (534)
T PHA03098 421 GS-PLPI-SH--------YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR----INASL--- 483 (534)
T ss_pred cC-CCCc-cc--------cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc----ccceE---
Confidence 53 2221 11 1223466789999988654321 24888899999999998775321 01111
Q ss_pred CCCccccCeEEEcccccC---CceEEEEecCCceeecCCC
Q 017173 315 DLPGIMRNSVYFSKVRFF---GKRCISYSLNDSRYYPRKQ 351 (376)
Q Consensus 315 ~~~g~~~n~Iyf~~~~~~---~~~~~vy~l~~~~~~~~~~ 351 (376)
...+|.||+...... ...+.+||.++++|...+.
T Consensus 484 ---~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 484 ---CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ---EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 124778888764321 3467899999999997653
No 8
>PLN02153 epithiospecifier protein
Probab=98.91 E-value=5.3e-07 Score=84.65 Aligned_cols=210 Identities=11% Similarity=0.124 Sum_probs=123.7
Q ss_pred ecCCeEEEEeCC-------CCeEEEEcCCCcceecCCCccc-c------eeEEEeecCCCCCCeEEEEEecc--CCCeEE
Q 017173 118 TKDSWLLLYRPR-------THRVFFFNPFTRDMIKLPRFEL-T------YQIVAFSCAPTSSSCVVFTVKHI--SPTVVA 181 (376)
Q Consensus 118 s~~G~ll~~~~~-------~~~~~l~NP~T~~~~~LP~~~~-~------~~~~~l~~~p~~~~~~v~~i~~~--~~~~~~ 181 (376)
..++-|++.... .+.++++||.+.+|..+|++.. . ...+++. + .++.+... ......
T Consensus 30 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~------~-~iyv~GG~~~~~~~~~ 102 (341)
T PLN02153 30 VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG------T-KLYIFGGRDEKREFSD 102 (341)
T ss_pred EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC------C-EEEEECCCCCCCccCc
Confidence 446666665442 1368999999999998876531 1 1111221 1 23333221 111235
Q ss_pred EEEEecCCCCeeeeccCC--CCCccccceeeeEEeCCeEEEEccC------------CeEEEEeCCCCCceeeeeCC-CC
Q 017173 182 ISTCHPGATEWVTDNYQN--RLPFVSSIWNKLVFCNGIFYCLSLT------------GWLGVFDPVKRDWGVLVVPP-PK 246 (376)
Q Consensus 182 ~~~y~~~~~~W~~~~~~~--~~p~~~~~~~~~v~~~G~~Y~l~~~------------~~i~~~D~~~~~~~~~~~p~-p~ 246 (376)
+++|++.+++|+.+.... ..|. ......++.+++++|++... ..+.+||+.++.|..+..+. +.
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPE-ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCC-CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 789999999999876421 0121 13355678899999998642 24889999999998654211 11
Q ss_pred CCcccccccccceeEEEEECCcEEEEEEecC----------CCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCC
Q 017173 247 CPENFFAKNWWKGKFMVEHKGDILVIYTCCS----------ENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADL 316 (376)
Q Consensus 247 ~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~----------~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~ 316 (376)
.+. ....++..+|+++++..... ..-.|+.+|.++.+|+++..+|..-. .+ ...++
T Consensus 182 ~~r--------~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~--~r-~~~~~--- 247 (341)
T PLN02153 182 EKR--------GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS--AR-SVFAH--- 247 (341)
T ss_pred CCC--------CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC--Cc-ceeee---
Confidence 111 12235567899998865321 11357888999999999986543100 00 00000
Q ss_pred CccccCeEEEccccc------------CCceEEEEecCCceeecCC
Q 017173 317 PGIMRNSVYFSKVRF------------FGKRCISYSLNDSRYYPRK 350 (376)
Q Consensus 317 ~g~~~n~Iyf~~~~~------------~~~~~~vy~l~~~~~~~~~ 350 (376)
-..+|.||+.-... ....+.+||+++.+|+.+.
T Consensus 248 -~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 248 -AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred -EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 12467888875421 1235789999999998654
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.85 E-value=1.6e-07 Score=93.61 Aligned_cols=187 Identities=7% Similarity=0.058 Sum_probs=119.9
Q ss_pred EEEEcCCCCceEEee-cCCCCCCeEEEecCCeEEEEeCC-----CCeEEEEcCCCcceecCCCccccee---EEEeecCC
Q 017173 92 YEFYDPAQRKTYSLE-LPELYGSRVCYTKDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRFELTYQ---IVAFSCAP 162 (376)
Q Consensus 92 ~~~~~~~~~~~~~~~-lp~~~~~~~~~s~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~~~~~~---~~~l~~~p 162 (376)
...|||..+.|..++ +|.......+++.+|.|++.++. ...+..+||.|++|..+|+++.... .+++.
T Consensus 322 v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~--- 398 (557)
T PHA02713 322 VYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD--- 398 (557)
T ss_pred EEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEEC---
Confidence 456899999997653 33211222334568888877653 2358899999999999998876432 22221
Q ss_pred CCCCeEEEEEeccCC--------------------CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEc
Q 017173 163 TSSSCVVFTVKHISP--------------------TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLS 222 (376)
Q Consensus 163 ~~~~~~v~~i~~~~~--------------------~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~ 222 (376)
+ .++++....+ ....++.|++.+++|+.+...+ .+ .....++.++|++|+++
T Consensus 399 ---g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~---r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 399 ---Q-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TG---TIRPGVVSHKDDIYVVC 470 (557)
T ss_pred ---C-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cc---cccCcEEEECCEEEEEe
Confidence 1 2222221110 0235889999999999876422 22 33456899999999997
Q ss_pred cC-------CeEEEEeCCC-CCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccEEE
Q 017173 223 LT-------GWLGVFDPVK-RDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEE 294 (376)
Q Consensus 223 ~~-------~~i~~~D~~~-~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~ 294 (376)
.. ..+.+||+.+ +.|+.+. +.|. +. ....++..+|.|++++..... ..|-..|..+.+|..
T Consensus 471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~-~r--------~~~~~~~~~~~iyv~Gg~~~~-~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 471 DIKDEKNVKTCIFRYNTNTYNGWELIT-TTES-RL--------SALHTILHDNTIMMLHCYESY-MLQDTFNVYTYEWNH 539 (557)
T ss_pred CCCCCCccceeEEEecCCCCCCeeEcc-ccCc-cc--------ccceeEEECCEEEEEeeecce-eehhhcCcccccccc
Confidence 42 2367999999 7998653 2221 11 234667789999999886542 134444889999998
Q ss_pred eeccCC
Q 017173 295 MKTLDG 300 (376)
Q Consensus 295 v~~lg~ 300 (376)
+..-..
T Consensus 540 ~~~~~~ 545 (557)
T PHA02713 540 ICHQHS 545 (557)
T ss_pred hhhhcC
Confidence 876543
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.84 E-value=4.2e-07 Score=89.18 Aligned_cols=196 Identities=10% Similarity=0.075 Sum_probs=122.8
Q ss_pred cCCeEEEEeCC-----CCeEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCee
Q 017173 119 KDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWV 193 (376)
Q Consensus 119 ~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~ 193 (376)
.++.|++.++. ...+..+||.+++|..+|+++.......... .++ .++++....+ ...++.|++.+++|+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~-~iYviGG~~~-~~sve~ydp~~n~W~ 344 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANN-KLYVVGGLPN-PTSVERWFHGDAAWV 344 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECC-EEEEECCcCC-CCceEEEECCCCeEE
Confidence 45666655542 1357789999999999998865332111110 011 3333332211 134688999999999
Q ss_pred eeccCCCCCccccceeeeEEeCCeEEEEccC----CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcE
Q 017173 194 TDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT----GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDI 269 (376)
Q Consensus 194 ~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~----~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~L 269 (376)
.++..+ .+ .....++.++|++|+++.. ..+.+||+.++.|+.+. +++ .|. .....+..+|+|
T Consensus 345 ~~~~l~-~~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~-~~r--------~~~~~~~~~~~I 410 (480)
T PHA02790 345 NMPSLL-KP---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STY-YPH--------YKSCALVFGRRL 410 (480)
T ss_pred ECCCCC-CC---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCC-Ccc--------ccceEEEECCEE
Confidence 876422 22 2345678899999999652 34788999999997652 221 122 123456788999
Q ss_pred EEEEEecCCCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccC---CceEEEEecCCcee
Q 017173 270 LVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFF---GKRCISYSLNDSRY 346 (376)
Q Consensus 270 llV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~---~~~~~vy~l~~~~~ 346 (376)
++++. ...+| |.++.+|+.+.+|+..-...| . ...+|.||...+... ...+-+||.++++|
T Consensus 411 Yv~GG----~~e~y--dp~~~~W~~~~~m~~~r~~~~----~------~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 411 FLVGR----NAEFY--CESSNTWTLIDDPIYPRDNPE----L------IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred EEECC----ceEEe--cCCCCcEeEcCCCCCCccccE----E------EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 99874 23444 888999999998864211111 1 135778998864211 23466999999999
Q ss_pred ecC
Q 017173 347 YPR 349 (376)
Q Consensus 347 ~~~ 349 (376)
+..
T Consensus 475 ~~~ 477 (480)
T PHA02790 475 NIW 477 (480)
T ss_pred Eec
Confidence 863
No 11
>PLN02193 nitrile-specifier protein
Probab=98.81 E-value=1.9e-06 Score=84.41 Aligned_cols=236 Identities=12% Similarity=0.094 Sum_probs=134.4
Q ss_pred EcCCC----CceEEeec----CCCCCCeEEEecCCeEEEEeCC-------CCeEEEEcCCCcceecCCCcc---c-ce-e
Q 017173 95 YDPAQ----RKTYSLEL----PELYGSRVCYTKDSWLLLYRPR-------THRVFFFNPFTRDMIKLPRFE---L-TY-Q 154 (376)
Q Consensus 95 ~~~~~----~~~~~~~l----p~~~~~~~~~s~~G~ll~~~~~-------~~~~~l~NP~T~~~~~LP~~~---~-~~-~ 154 (376)
++|.. ++|..+.. |..+....+...++-|++.... .+.+.++||.+.+|..+|+.. . .. .
T Consensus 142 ~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~ 221 (470)
T PLN02193 142 SLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLG 221 (470)
T ss_pred ecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccc
Confidence 36544 68887652 3212112223335666665542 135889999999998876532 1 11 1
Q ss_pred EEEeecCCCCCCeEEEEEecc--CCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC------Ce
Q 017173 155 IVAFSCAPTSSSCVVFTVKHI--SPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT------GW 226 (376)
Q Consensus 155 ~~~l~~~p~~~~~~v~~i~~~--~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~------~~ 226 (376)
..+... +. .++.+... ......+..|++.+++|+.+......|. ......++.+++++|++... ..
T Consensus 222 ~~~v~~----~~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 222 VRMVSI----GS-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-PRSFHSMAADEENVYVFGGVSATARLKT 295 (470)
T ss_pred eEEEEE----CC-EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-CccceEEEEECCEEEEECCCCCCCCcce
Confidence 111111 11 22222211 1112357899999999998764321121 13445677889999998642 35
Q ss_pred EEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC-CcEEEEEecCCccEEEeeccCCcEEEe
Q 017173 227 LGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE-NPIIFKLDQSKMAWEEMKTLDGLTLFA 305 (376)
Q Consensus 227 i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~-~~~V~~ld~~~~~W~~v~~lg~~~lFl 305 (376)
+.+||+.+..|+.+..+.. .+.. ....-++..+|+++++...... .-.|+.+|.++.+|+++..+|..-.
T Consensus 296 ~~~yd~~t~~W~~~~~~~~-~~~~------R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~-- 366 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGD-SFSI------RGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS-- 366 (470)
T ss_pred EEEEECCCCEEEeCCCCCC-CCCC------CCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC--
Confidence 8899999999987643211 1111 0122445568999988764322 2457888999999999987753210
Q ss_pred eCCcccccCCCCccccCeEEEcccccC------------CceEEEEecCCceeecCC
Q 017173 306 SFLSSQSRADLPGIMRNSVYFSKVRFF------------GKRCISYSLNDSRYYPRK 350 (376)
Q Consensus 306 g~~~s~~~~~~~g~~~n~Iyf~~~~~~------------~~~~~vy~l~~~~~~~~~ 350 (376)
.+.. .++ ...+|.||+.-.... ...+.+||+++.+|+.+.
T Consensus 367 ~R~~-~~~----~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 367 ERSV-FAS----AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred Ccce-eEE----EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 0100 000 124677887654210 124789999999999664
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.81 E-value=2.9e-07 Score=91.59 Aligned_cols=182 Identities=14% Similarity=0.211 Sum_probs=124.0
Q ss_pred EEEEEcCCCCceEEeecCCCCCCe---EEEecCCeEEEEeCCC-----CeEEEEcCCCcceecCCCccccee---EEEee
Q 017173 91 LYEFYDPAQRKTYSLELPELYGSR---VCYTKDSWLLLYRPRT-----HRVFFFNPFTRDMIKLPRFELTYQ---IVAFS 159 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~lp~~~~~~---~~~s~~G~ll~~~~~~-----~~~~l~NP~T~~~~~LP~~~~~~~---~~~l~ 159 (376)
....|||..++|..+ |++...| -+++.+|.|+..++.. ..+..+||.|.+|-..+++..... .+++.
T Consensus 350 ~ve~YD~~~~~W~~~--a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPV--APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG 427 (571)
T ss_pred eEEEecCCCCceecc--CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC
Confidence 456799999999874 4333222 2456789888876542 358899999999999988865322 22221
Q ss_pred cCCCCCCeEEEEEeccC--C-CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC------CeEEEE
Q 017173 160 CAPTSSSCVVFTVKHIS--P-TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT------GWLGVF 230 (376)
Q Consensus 160 ~~p~~~~~~v~~i~~~~--~-~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~------~~i~~~ 230 (376)
+ +++.+.... . ....++.|||.++.|+.++... .+ .....++..||++|+++.. ..+.+|
T Consensus 428 -----g--~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~---R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~y 496 (571)
T KOG4441|consen 428 -----G--KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TR---RSGFGVAVLNGKIYVVGGFDGTSALSSVERY 496 (571)
T ss_pred -----C--EEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-cc---cccceEEEECCEEEEECCccCCCccceEEEE
Confidence 1 222322211 1 2347899999999999887532 22 3455689999999999763 238889
Q ss_pred eCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC----CcEEEEEecCCccEEEeec
Q 017173 231 DPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE----NPIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 231 D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~----~~~V~~ld~~~~~W~~v~~ 297 (376)
|+.+++|..+. ++.. +. ....++..+|.|++++..... .+.+| |+++.+|.....
T Consensus 497 dp~~~~W~~v~-~m~~-~r--------s~~g~~~~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~ 555 (571)
T KOG4441|consen 497 DPETNQWTMVA-PMTS-PR--------SAVGVVVLGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTE 555 (571)
T ss_pred cCCCCceeEcc-cCcc-cc--------ccccEEEECCEEEEEecccCccccceeEEc--CCCCCceeeCCC
Confidence 99999998763 2211 11 234678889999999985542 34555 999999999987
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.80 E-value=4e-07 Score=90.87 Aligned_cols=191 Identities=11% Similarity=0.128 Sum_probs=119.9
Q ss_pred EEEEEcCCCCceEEee-cCCCCCCeEEEecCCeEEEEeCC-----CCeEEEEcCCCcceecCCCcccceeE-EEeecCCC
Q 017173 91 LYEFYDPAQRKTYSLE-LPELYGSRVCYTKDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRFELTYQI-VAFSCAPT 163 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~-lp~~~~~~~~~s~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~~~~~~~-~~l~~~p~ 163 (376)
....||+.+++|..++ +|.......+.+.+|-|++.++. .+.+..+||.|++|..+|+++..... .+...
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--- 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--- 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE---
Confidence 3457899999997654 33211111223447777776553 23588899999999999887654321 11111
Q ss_pred CCCeEEEEEecc--C-CCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC---------CeEEEEe
Q 017173 164 SSSCVVFTVKHI--S-PTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT---------GWLGVFD 231 (376)
Q Consensus 164 ~~~~~v~~i~~~--~-~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~---------~~i~~~D 231 (376)
. + .++.+... . .....++.|++.+++|+.....+ .+ .....++.++|++|+++.. ..+.+||
T Consensus 389 ~-~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 389 N-N-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-IS---HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred C-C-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-cc---ccCceEEEECCEEEEECCccCCCCCcccceEEEec
Confidence 1 1 22332221 1 11236789999999999876432 22 2344578889999998742 2389999
Q ss_pred CCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC--CcEEEEEecCCccEEEeeccCC
Q 017173 232 PVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE--NPIIFKLDQSKMAWEEMKTLDG 300 (376)
Q Consensus 232 ~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~--~~~V~~ld~~~~~W~~v~~lg~ 300 (376)
+.++.|+.+.. .+ .+. ....++..+|+|++++..... .-.|+..|.++.+|..+..++.
T Consensus 463 ~~~~~W~~~~~-~~-~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 463 PVTNKWTELSS-LN-FPR--------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCCCceeeCCC-CC-ccc--------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 99999987631 21 121 122345568999998865432 2357788999999999988765
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.73 E-value=2.1e-09 Score=69.58 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=33.9
Q ss_pred CCCccHHHHHHHHhcCCcccceehhccccccccCcccc
Q 017173 36 WSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISV 73 (376)
Q Consensus 36 Ws~LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 73 (376)
|..||+|++.+|++.|+..|+.+++.|||.|+.++.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh
Confidence 68999999999999999999999999999999998764
No 15
>PLN02153 epithiospecifier protein
Probab=98.72 E-value=4.1e-06 Score=78.62 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=115.4
Q ss_pred EEEEEcCCCCceEEee-cCCCCCC---e-EEEecCCeEEEEeCC-----CCeEEEEcCCCcceecCCCc-----ccce--
Q 017173 91 LYEFYDPAQRKTYSLE-LPELYGS---R-VCYTKDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRF-----ELTY-- 153 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~-lp~~~~~---~-~~~s~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~-----~~~~-- 153 (376)
....||+..++|..++ ++..+.. . .+.+.++.|++.... .+.+.++||.|.+|..++++ +...
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 3557899999998764 2212211 1 123446777776542 24689999999999988765 2111
Q ss_pred eEEEeecCCCCCCeEEEEEeccC-C-------CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEcc--
Q 017173 154 QIVAFSCAPTSSSCVVFTVKHIS-P-------TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSL-- 223 (376)
Q Consensus 154 ~~~~l~~~p~~~~~~v~~i~~~~-~-------~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~-- 223 (376)
..++.. . + +++.+.... . ....+.+|++.+++|+.+......+. ......++.++|++|++..
T Consensus 131 ~~~~~~----~-~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 131 HSMASD----E-N-HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGAGFAVVQGKIWVVYGFA 203 (341)
T ss_pred eEEEEE----C-C-EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcceEEEECCeEEEEeccc
Confidence 111111 1 1 222221111 0 12357899999999998765321111 1334456789999998742
Q ss_pred ------------CCeEEEEeCCCCCceeeeeC--CCCCCcccccccccceeEEEEECCcEEEEEEecC---------C--
Q 017173 224 ------------TGWLGVFDPVKRDWGVLVVP--PPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS---------E-- 278 (376)
Q Consensus 224 ------------~~~i~~~D~~~~~~~~~~~p--~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~---------~-- 278 (376)
...+.+||+.+..|+.+... .|. +. ...-.+..+++|++++.... .
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~-~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS-AR--------SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred cccccCCccceecCceEEEEcCCCcEEeccccCCCCC-Cc--------ceeeeEEECCEEEEECcccCCccccccccccc
Confidence 24589999999999876421 111 11 11234556789999877421 1
Q ss_pred CcEEEEEecCCccEEEeecc
Q 017173 279 NPIIFKLDQSKMAWEEMKTL 298 (376)
Q Consensus 279 ~~~V~~ld~~~~~W~~v~~l 298 (376)
.-.||.+|.++.+|+++...
T Consensus 275 ~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred cccEEEEEcCccEEEeccCC
Confidence 13799999999999999754
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.66 E-value=1.4e-05 Score=75.14 Aligned_cols=165 Identities=13% Similarity=0.167 Sum_probs=99.1
Q ss_pred ecCCeEEEEeCC-CCeEEEEcC--CCcceecCCCccc-cee---EEEeecCCCCCCeEEEEEeccC--C------CeEEE
Q 017173 118 TKDSWLLLYRPR-THRVFFFNP--FTRDMIKLPRFEL-TYQ---IVAFSCAPTSSSCVVFTVKHIS--P------TVVAI 182 (376)
Q Consensus 118 s~~G~ll~~~~~-~~~~~l~NP--~T~~~~~LP~~~~-~~~---~~~l~~~p~~~~~~v~~i~~~~--~------~~~~~ 182 (376)
..++-|++.... .+.++.+|+ .+++|..+|+++. ... .+++. + .++++.... . ....+
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-----~--~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-----G--KLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-----C--EEEEEeCCCCCCCCCcceecccE
Confidence 446666665443 346777774 6788999998762 221 12221 1 233332211 0 12357
Q ss_pred EEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC--------------------------------------
Q 017173 183 STCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT-------------------------------------- 224 (376)
Q Consensus 183 ~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------------------------------------- 224 (376)
+.|++.+++|+.+... +|........++.++|++|++...
T Consensus 88 ~~Yd~~~~~W~~~~~~--~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 88 YRYDPKKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred EEEECCCCEEecCCCC--CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 8999999999988632 331111112223689999998642
Q ss_pred --CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC-----CcEEEEEecCCccEEEeec
Q 017173 225 --GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE-----NPIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 225 --~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~-----~~~V~~ld~~~~~W~~v~~ 297 (376)
..+.+||+.+++|+.+. +.|..+. ...-++..+|+|++++..... .+.+|.+|.++.+|.++..
T Consensus 166 ~~~~v~~YDp~t~~W~~~~-~~p~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLG-ENPFLGT--------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ccceEEEEECCCCceeECc-cCCCCcC--------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 46899999999998763 2221111 223456678999999875431 2344556667789999999
Q ss_pred cCC
Q 017173 298 LDG 300 (376)
Q Consensus 298 lg~ 300 (376)
|+.
T Consensus 237 m~~ 239 (346)
T TIGR03547 237 LPP 239 (346)
T ss_pred CCC
Confidence 864
No 17
>PLN02193 nitrile-specifier protein
Probab=98.62 E-value=6.1e-06 Score=80.80 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=118.2
Q ss_pred EEEEcCCCCceEEeec----CCCCC-CeEEEecCCeEEEEeCC-----CCeEEEEcCCCcceecCCCc---ccce--eEE
Q 017173 92 YEFYDPAQRKTYSLEL----PELYG-SRVCYTKDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRF---ELTY--QIV 156 (376)
Q Consensus 92 ~~~~~~~~~~~~~~~l----p~~~~-~~~~~s~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~---~~~~--~~~ 156 (376)
...||+..++|..++. |.... .......++.|++.... .+.++.+||.|.+|..++++ +... ..+
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~ 274 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM 274 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEE
Confidence 4568999999987542 22111 11223457777776542 24689999999999988765 2221 111
Q ss_pred EeecCCCCCCeEEEEEecc--CCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEcc-----CCeEEE
Q 017173 157 AFSCAPTSSSCVVFTVKHI--SPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSL-----TGWLGV 229 (376)
Q Consensus 157 ~l~~~p~~~~~~v~~i~~~--~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~-----~~~i~~ 229 (376)
+.. ++ +++.+... ......+..|++.+++|+.+..+...+. ......++.++|++|++.. ...+.+
T Consensus 275 ~~~-----~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~R~~~~~~~~~gkiyviGG~~g~~~~dv~~ 347 (470)
T PLN02193 275 AAD-----EE-NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS-IRGGAGLEVVQGKVWVVYGFNGCEVDDVHY 347 (470)
T ss_pred EEE-----CC-EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCC-CCCCcEEEEECCcEEEEECCCCCccCceEE
Confidence 111 11 22222211 1112357899999999998765322221 1234456788999998854 246999
Q ss_pred EeCCCCCceeeeeC-CCCCCcccccccccceeEEEEECCcEEEEEEecC---------CC--cEEEEEecCCccEEEeec
Q 017173 230 FDPVKRDWGVLVVP-PPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS---------EN--PIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 230 ~D~~~~~~~~~~~p-~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~---------~~--~~V~~ld~~~~~W~~v~~ 297 (376)
||+.++.|+.+... .+..+. .....+..+++|+++..... .. -.+|.+|.++.+|+++..
T Consensus 348 yD~~t~~W~~~~~~g~~P~~R--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 348 YDPVQDKWTQVETFGVRPSER--------SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred EECCCCEEEEeccCCCCCCCc--------ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 99999999876421 111111 12234556788888876432 11 258999999999999987
Q ss_pred cCC
Q 017173 298 LDG 300 (376)
Q Consensus 298 lg~ 300 (376)
++.
T Consensus 420 ~~~ 422 (470)
T PLN02193 420 FGE 422 (470)
T ss_pred CCC
Confidence 764
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.54 E-value=2.5e-05 Score=72.74 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=88.5
Q ss_pred eEEEE-cCCCc-ceecCCCccccee---EEEeecCCCCCCeEEEEEecc--CCCeEEEEEEecCCCCe----eeeccCCC
Q 017173 132 RVFFF-NPFTR-DMIKLPRFELTYQ---IVAFSCAPTSSSCVVFTVKHI--SPTVVAISTCHPGATEW----VTDNYQNR 200 (376)
Q Consensus 132 ~~~l~-NP~T~-~~~~LP~~~~~~~---~~~l~~~p~~~~~~v~~i~~~--~~~~~~~~~y~~~~~~W----~~~~~~~~ 200 (376)
+++++ +|... +|..+++++.... .+++. + .++.+... ......+..|+..++.| +... .
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~------~-~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~---~ 109 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE------N-GIYYIGGSNSSERFSSVYRITLDESKEELICETIG---N 109 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEEC------C-EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC---C
Confidence 46666 45433 6888776654321 12221 1 23333221 11124577888888888 3333 2
Q ss_pred CCccccceeeeEEeCCeEEEEccC------CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEE
Q 017173 201 LPFVSSIWNKLVFCNGIFYCLSLT------GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYT 274 (376)
Q Consensus 201 ~p~~~~~~~~~v~~~G~~Y~l~~~------~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~ 274 (376)
+|.. .....+++++|++|++... ..+.+||+.++.|+.+. +.|..+. .....+..+|.|++++.
T Consensus 110 lp~~-~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r--------~~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 110 LPFT-FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-DFPGEPR--------VQPVCVKLQNELYVFGG 179 (323)
T ss_pred CCcC-ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-CCCCCCC--------CcceEEEECCEEEEEcC
Confidence 3321 2234567889999998652 46899999999998763 1221111 12244667899999886
Q ss_pred ecCC-CcEEEEEecCCccEEEeeccC
Q 017173 275 CCSE-NPIIFKLDQSKMAWEEMKTLD 299 (376)
Q Consensus 275 ~~~~-~~~V~~ld~~~~~W~~v~~lg 299 (376)
.... ...++..|.++.+|+++..++
T Consensus 180 ~~~~~~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 180 GSNIAYTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred CCCccccceEEEecCCCeeEECCCCC
Confidence 4332 235677899999999998763
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.48 E-value=2e-05 Score=74.94 Aligned_cols=211 Identities=11% Similarity=0.092 Sum_probs=118.8
Q ss_pred ecCCeEEEEeCC-CCeEEEEcCC--CcceecCCCccc-ce---eEEEeecCCCCCCeEEEEEeccCC-------C-eEEE
Q 017173 118 TKDSWLLLYRPR-THRVFFFNPF--TRDMIKLPRFEL-TY---QIVAFSCAPTSSSCVVFTVKHISP-------T-VVAI 182 (376)
Q Consensus 118 s~~G~ll~~~~~-~~~~~l~NP~--T~~~~~LP~~~~-~~---~~~~l~~~p~~~~~~v~~i~~~~~-------~-~~~~ 182 (376)
..++-|++.... ...++++|+- +++|..+|+++. .. ..+++. + .++.+..... . ...+
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~------~-~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID------G-KLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC------C-EEEEEcCCCCCCCCCceeEcccE
Confidence 446666665432 3356777765 578988887652 11 112221 1 2222221110 0 1357
Q ss_pred EEEecCCCCeeeeccCCCCCccccceeeeEE-eCCeEEEEccC-------------------------------------
Q 017173 183 STCHPGATEWVTDNYQNRLPFVSSIWNKLVF-CNGIFYCLSLT------------------------------------- 224 (376)
Q Consensus 183 ~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~-~~G~~Y~l~~~------------------------------------- 224 (376)
+.|++.+++|+.+... .|.. .....++. ++|++|++...
T Consensus 109 ~~YD~~~n~W~~~~~~--~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 109 YKYDPKTNSWQKLDTR--SPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred EEEeCCCCEEEeCCCC--CCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 8899999999988642 2311 11222333 89999999642
Q ss_pred ---CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecC-----CCcEEEEEecCCccEEEee
Q 017173 225 ---GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS-----ENPIIFKLDQSKMAWEEMK 296 (376)
Q Consensus 225 ---~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~-----~~~~V~~ld~~~~~W~~v~ 296 (376)
..+.+||+.++.|+.+. +.|..+. ....++..+++|++++.... ..+.++++|.++.+|+++.
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~-~~p~~~~--------~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAG-ESPFLGT--------AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred CcCceEEEEECCCCeeeECC-cCCCCCC--------CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 35899999999998653 2221111 22345667899999987432 2345667788889999999
Q ss_pred ccCCcE-EEeeCCcccccCCCCccccCeEEEcccccC-----------------C---ceEEEEecCCceeecCC
Q 017173 297 TLDGLT-LFASFLSSQSRADLPGIMRNSVYFSKVRFF-----------------G---KRCISYSLNDSRYYPRK 350 (376)
Q Consensus 297 ~lg~~~-lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~-----------------~---~~~~vy~l~~~~~~~~~ 350 (376)
.|+..- ....... .. ....+.+|.||+.-.... . ..+-+||.++++|....
T Consensus 257 ~~p~~~~~~~~~~~-~~--~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 257 DLPPAPGGSSQEGV-AG--AFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCCCCcCCcCCcc-ce--EeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 986421 1110000 00 001235778888754210 0 11237999998887543
No 20
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.48 E-value=1.2e-06 Score=70.01 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=61.6
Q ss_pred eEEeCCeEEEEccC-----CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC---CcEE
Q 017173 211 LVFCNGIFYCLSLT-----GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE---NPII 282 (376)
Q Consensus 211 ~v~~~G~~Y~l~~~-----~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~---~~~V 282 (376)
+++.||.+||++.. ..|++||+.++.|+.+..|.. +.. ......|++.+|+|.++...... .+.|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~--~~~-----~~~~~~L~~~~G~L~~v~~~~~~~~~~~~i 73 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPED--PYS-----SDCSSTLIEYKGKLALVSYNDQGEPDSIDI 73 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeee--ecc-----ccCccEEEEeCCeEEEEEecCCCCcceEEE
Confidence 37899999999764 579999999999998887611 111 11456899999999999886654 4999
Q ss_pred EEEec-CCccEEEeec
Q 017173 283 FKLDQ-SKMAWEEMKT 297 (376)
Q Consensus 283 ~~ld~-~~~~W~~v~~ 297 (376)
|.|+. ++.+|.+...
T Consensus 74 WvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 74 WVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEeeccccceEEEEEE
Confidence 99964 5678998865
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.44 E-value=1.4e-08 Score=65.95 Aligned_cols=39 Identities=33% Similarity=0.499 Sum_probs=33.4
Q ss_pred CCCCccHHHHHHHHhcCCcccceehhccccccccCcccc
Q 017173 35 DWSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISV 73 (376)
Q Consensus 35 ~Ws~LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 73 (376)
.|++||+|++.+|+.+|+..++++++.|||.|++++.+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 367899999999999999999999999999999998864
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.38 E-value=0.00011 Score=69.05 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=119.3
Q ss_pred EEEEEcC--CCCceEEee-cCCCCCC-eEEEecCCeEEEEeCC-----------CCeEEEEcCCCcceecCCC-cccce-
Q 017173 91 LYEFYDP--AQRKTYSLE-LPELYGS-RVCYTKDSWLLLYRPR-----------THRVFFFNPFTRDMIKLPR-FELTY- 153 (376)
Q Consensus 91 ~~~~~~~--~~~~~~~~~-lp~~~~~-~~~~s~~G~ll~~~~~-----------~~~~~l~NP~T~~~~~LP~-~~~~~- 153 (376)
....||+ ..++|..++ +|..+.. ..+.+.+|-|++.... ...+..+||.+++|..++. ++...
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~ 109 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLL 109 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCccc
Confidence 4455675 567787654 4421222 2234557777776642 1357889999999998863 33221
Q ss_pred eEEEe-ecCCCCCCeEEEEEeccCCC------------------------------------eEEEEEEecCCCCeeeec
Q 017173 154 QIVAF-SCAPTSSSCVVFTVKHISPT------------------------------------VVAISTCHPGATEWVTDN 196 (376)
Q Consensus 154 ~~~~l-~~~p~~~~~~v~~i~~~~~~------------------------------------~~~~~~y~~~~~~W~~~~ 196 (376)
...+. .. +-+++++...... ...++.|++.+++|+.+.
T Consensus 110 ~~~~~~~~-----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 110 GASGFSLH-----NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceeEEEEe-----CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 11111 11 1123333211100 136889999999999886
Q ss_pred cCCCCCccccceeeeEEeCCeEEEEccC-------CeEEEEeC--CCCCceeeeeCCCCCCcccccccccceeEEEEECC
Q 017173 197 YQNRLPFVSSIWNKLVFCNGIFYCLSLT-------GWLGVFDP--VKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKG 267 (376)
Q Consensus 197 ~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------~~i~~~D~--~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G 267 (376)
..+..+ .....++.++|++|++... ..+..||+ +++.|..+. +.|. +... ..........+..+|
T Consensus 185 ~~p~~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~m~~-~r~~-~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 185 ENPFLG---TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-PLPP-PKSS-SQEGLAGAFAGISNG 258 (346)
T ss_pred cCCCCc---CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-CCCC-CCCC-ccccccEEeeeEECC
Confidence 432111 2345577889999998642 23555665 555897653 2221 1100 000001223567899
Q ss_pred cEEEEEEecCC----------------C---cEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcc
Q 017173 268 DILVIYTCCSE----------------N---PIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSK 328 (376)
Q Consensus 268 ~LllV~~~~~~----------------~---~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~ 328 (376)
+|++++..... . ..+-..|.++.+|+.+..|+...-.. + + -..+|.||+.-
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~----~-~-----~~~~~~iyv~G 328 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYG----V-S-----VSWNNGVLLIG 328 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceee----E-E-----EEcCCEEEEEe
Confidence 99999864310 0 12333366788899999987532111 1 0 12578899886
Q ss_pred c
Q 017173 329 V 329 (376)
Q Consensus 329 ~ 329 (376)
.
T Consensus 329 G 329 (346)
T TIGR03547 329 G 329 (346)
T ss_pred c
Confidence 5
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.35 E-value=6.6e-08 Score=60.42 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.9
Q ss_pred ccHHHHHHHHhcCCcccceehhccccccccCccccC
Q 017173 39 LPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVR 74 (376)
Q Consensus 39 LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~~ 74 (376)
||+|++.+|+.+|+..|+.+++.|||+|+.++..+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~ 36 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHD 36 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChh
Confidence 799999999999999999999999999999998754
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.35 E-value=5.7e-05 Score=70.38 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=98.9
Q ss_pred EEEEcCCCCceE-E-eecCCCCC---CeEEEecCCeEEEEeCC-----CCeEEEEcCCCcceecCCCccc-ce-eEEEee
Q 017173 92 YEFYDPAQRKTY-S-LELPELYG---SRVCYTKDSWLLLYRPR-----THRVFFFNPFTRDMIKLPRFEL-TY-QIVAFS 159 (376)
Q Consensus 92 ~~~~~~~~~~~~-~-~~lp~~~~---~~~~~s~~G~ll~~~~~-----~~~~~l~NP~T~~~~~LP~~~~-~~-~~~~l~ 159 (376)
...||+..++|. . ..+|.++. ....+..+|-|++.... .+.+..+||.|++|..+|+++. .. ..++..
T Consensus 90 v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~ 169 (323)
T TIGR03548 90 VYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK 169 (323)
T ss_pred EEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE
Confidence 445788888872 1 12333322 12223457777776542 2468999999999999987643 21 111111
Q ss_pred cCCCCCCeEEEEEeccC-CCeEEEEEEecCCCCeeeeccCC--CCCccccceeeeEEeCCeEEEEccC------------
Q 017173 160 CAPTSSSCVVFTVKHIS-PTVVAISTCHPGATEWVTDNYQN--RLPFVSSIWNKLVFCNGIFYCLSLT------------ 224 (376)
Q Consensus 160 ~~p~~~~~~v~~i~~~~-~~~~~~~~y~~~~~~W~~~~~~~--~~p~~~~~~~~~v~~~G~~Y~l~~~------------ 224 (376)
.. + .++.+.... .....++.|++.+++|+.+.... ..|........+++.+|++|++...
T Consensus 170 ~~----~-~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 244 (323)
T TIGR03548 170 LQ----N-ELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDL 244 (323)
T ss_pred EC----C-EEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhh
Confidence 11 1 233332211 11234679999999999876532 1232112233456668999998642
Q ss_pred --------------------------CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEe
Q 017173 225 --------------------------GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTC 275 (376)
Q Consensus 225 --------------------------~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~ 275 (376)
..+.+||+.+++|+.+. +.|..+. ....++..+|.|+++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r--------~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 245 ATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG-NSPFFAR--------CGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc-ccccccc--------CchheEEECCEEEEEecc
Confidence 35999999999998764 2221111 223467889999998864
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.29 E-value=0.00073 Score=64.32 Aligned_cols=236 Identities=13% Similarity=0.095 Sum_probs=127.6
Q ss_pred EEEEEcCC--CCceEEee-cCCCCCCe-EEEecCCeEEEEeCCC-----------CeEEEEcCCCcceecCCCc-ccce-
Q 017173 91 LYEFYDPA--QRKTYSLE-LPELYGSR-VCYTKDSWLLLYRPRT-----------HRVFFFNPFTRDMIKLPRF-ELTY- 153 (376)
Q Consensus 91 ~~~~~~~~--~~~~~~~~-lp~~~~~~-~~~s~~G~ll~~~~~~-----------~~~~l~NP~T~~~~~LP~~-~~~~- 153 (376)
....||+. .+.|..++ +|..+... .+.+.+|.|++..+.. ..+..+||.+++|..+|+. +...
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~ 130 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLA 130 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCccc
Confidence 44566765 46787654 44212222 2345577777765421 3578899999999998753 2211
Q ss_pred eEEEee-cCCCCCCeEEEEEeccCC------------------------------------CeEEEEEEecCCCCeeeec
Q 017173 154 QIVAFS-CAPTSSSCVVFTVKHISP------------------------------------TVVAISTCHPGATEWVTDN 196 (376)
Q Consensus 154 ~~~~l~-~~p~~~~~~v~~i~~~~~------------------------------------~~~~~~~y~~~~~~W~~~~ 196 (376)
...+.. .+ + .++++..... -...+++||+.++.|+.+.
T Consensus 131 ~~~~~~~~~----~-~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 131 GHVAVSLHN----G-KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEeeC----C-EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC
Confidence 111111 11 1 2333321100 0125789999999999876
Q ss_pred cCCCCCccccceeeeEEeCCeEEEEccC-------CeEE--EEeCCCCCceeee-eCCCCCCcccccccccceeEEEEEC
Q 017173 197 YQNRLPFVSSIWNKLVFCNGIFYCLSLT-------GWLG--VFDPVKRDWGVLV-VPPPKCPENFFAKNWWKGKFMVEHK 266 (376)
Q Consensus 197 ~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------~~i~--~~D~~~~~~~~~~-~p~p~~~~~~~~~~~~~~~~Lv~~~ 266 (376)
..+ .+ ......++.+++++|++... ..+. .||+++..|..+. .|.+.. ... .........+..+
T Consensus 206 ~~p-~~--~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~--~~~-~~~~~~~~a~~~~ 279 (376)
T PRK14131 206 ESP-FL--GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG--GSS-QEGVAGAFAGYSN 279 (376)
T ss_pred cCC-CC--CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc--CCc-CCccceEeceeEC
Confidence 432 11 12344578889999998641 2233 4566778897653 222210 000 0000122245678
Q ss_pred CcEEEEEEecCC------------------C-cEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEc
Q 017173 267 GDILVIYTCCSE------------------N-PIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFS 327 (376)
Q Consensus 267 G~LllV~~~~~~------------------~-~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~ 327 (376)
|+|++++..... + ..+-..|.++.+|+++..|+..--.. + + ...+|.||+.
T Consensus 280 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~----~--a----v~~~~~iyv~ 349 (376)
T PRK14131 280 GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG----V--S----VSWNNGVLLI 349 (376)
T ss_pred CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce----E--E----EEeCCEEEEE
Confidence 999988764310 0 12334477888999998887531110 1 0 1257888888
Q ss_pred ccccC----CceEEEEecCCceee
Q 017173 328 KVRFF----GKRCISYSLNDSRYY 347 (376)
Q Consensus 328 ~~~~~----~~~~~vy~l~~~~~~ 347 (376)
-.... ...+.+|+.+++++.
T Consensus 350 GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 350 GGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred cCCCCCCcEeeeEEEEEEcCCEEE
Confidence 65321 235667887776543
No 26
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=97.90 E-value=9.6e-05 Score=61.60 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=56.2
Q ss_pred eEEeCCeEEEEccC--C----eEEEEeCCCCCc-eeeeeCCCCCCcccccccccceeEE-EEECCcEEEEEEecC-CCcE
Q 017173 211 LVFCNGIFYCLSLT--G----WLGVFDPVKRDW-GVLVVPPPKCPENFFAKNWWKGKFM-VEHKGDILVIYTCCS-ENPI 281 (376)
Q Consensus 211 ~v~~~G~~Y~l~~~--~----~i~~~D~~~~~~-~~~~~p~p~~~~~~~~~~~~~~~~L-v~~~G~LllV~~~~~-~~~~ 281 (376)
.|++||.+||++.. + .|++||+.++.+ +.+..|. .... ......| +..+|.|.++..... ..+.
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~--~~~~-----~~~~~~L~~v~~~~L~~~~~~~~~~~~~ 73 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPF--CNDD-----DDDSVSLSVVRGDCLCVLYQCDETSKIE 73 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCC--ccCc-----cCCEEEEEEecCCEEEEEEeccCCccEE
Confidence 48999999999762 1 599999999999 5554332 2110 0123445 344678888865443 4699
Q ss_pred EEEEecC---CccEEEeeccC
Q 017173 282 IFKLDQS---KMAWEEMKTLD 299 (376)
Q Consensus 282 V~~ld~~---~~~W~~v~~lg 299 (376)
||.|++. ..+|.++.+++
T Consensus 74 IWvm~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLFTID 94 (164)
T ss_pred EEEEeeeccCcceEEEEEEEe
Confidence 9999852 57899998876
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.2e-06 Score=74.70 Aligned_cols=69 Identities=23% Similarity=0.182 Sum_probs=53.1
Q ss_pred cchhhhhhhhcc-ccCCCccccccccccccCCCCCCccHHHHHHHHhcCCcccceehhccccccccCccccC
Q 017173 4 KKRRKLKLLAET-ETDGTKMVTEGKEERLELHDWSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVR 74 (376)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ws~LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~~ 74 (376)
+++.|.|++.+. ++..+|+. -....-.-..|..|||||++.|++.|+.++++++..|||+|..+..+.+
T Consensus 67 ~~nl~~k~~~~Def~ivrrp~--~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 67 RKNLKSKGSDKDEFVIVRRPK--LNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccccccccccccceEEEeccc--hhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 456677777766 66666632 2222223345999999999999999999999999999999999988753
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.55 E-value=0.0031 Score=55.07 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=95.1
Q ss_pred EEEEEEecCCCCeeeeccCC-------CCC--ccccceeeeEEeCCeEEEEccC-------CeEEEEeCCCCCceeeeeC
Q 017173 180 VAISTCHPGATEWVTDNYQN-------RLP--FVSSIWNKLVFCNGIFYCLSLT-------GWLGVFDPVKRDWGVLVVP 243 (376)
Q Consensus 180 ~~~~~y~~~~~~W~~~~~~~-------~~p--~~~~~~~~~v~~~G~~Y~l~~~-------~~i~~~D~~~~~~~~~~~p 243 (376)
+.+.+.+..+-+|+.++... ..| .+...-..+|.+++++|..... +-+..||+++..|...++.
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~ 123 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE 123 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence 45667777788999876410 111 1224456788999999987642 2388999999999643321
Q ss_pred CCCCCcccccccccceeEEEEECCcEEEEEEecCC----CcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCC--C-
Q 017173 244 PPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE----NPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRAD--L- 316 (376)
Q Consensus 244 ~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~----~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~--~- 316 (376)
--. |.. ..+...+..+..+++.+.+..+ .-++++||..+++|.++.+-|+-.-.-.+..+....+ |
T Consensus 124 G~v-Pga------RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYi 196 (392)
T KOG4693|consen 124 GFV-PGA------RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYI 196 (392)
T ss_pred eec-CCc------cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEE
Confidence 100 110 0222334556677777766543 2468999999999999988876433222211111000 0
Q ss_pred CccccC--eEEEcccccCCceEEEEecCCceeecCCCC
Q 017173 317 PGIMRN--SVYFSKVRFFGKRCISYSLNDSRYYPRKQC 352 (376)
Q Consensus 317 ~g~~~n--~Iyf~~~~~~~~~~~vy~l~~~~~~~~~~~ 352 (376)
.|-++| .-|-...+-+++.+.++||+++.|..+...
T Consensus 197 FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 197 FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred eccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 011111 112222222466788999999999977543
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.24 E-value=0.0052 Score=56.88 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=79.2
Q ss_pred eeEEeCCeEEEEcc---CCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEec-C---CCc--
Q 017173 210 KLVFCNGIFYCLSL---TGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCC-S---ENP-- 280 (376)
Q Consensus 210 ~~v~~~G~~Y~l~~---~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~-~---~~~-- 280 (376)
..+.++|-||--.. .+.|++||.....|..+..|-++.|.. .+...+.-.|.|+|.+.-. + .+|
T Consensus 80 ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRs-------shq~va~~s~~l~~fGGEfaSPnq~qF~H 152 (521)
T KOG1230|consen 80 ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRS-------SHQAVAVPSNILWLFGGEFASPNQEQFHH 152 (521)
T ss_pred eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCc-------cceeEEeccCeEEEeccccCCcchhhhhh
Confidence 45666777764222 357999999999998776543322332 1222333346777776532 2 223
Q ss_pred --EEEEEecCCccEEEeeccCC-------cEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeecCCC
Q 017173 281 --IIFKLDQSKMAWEEMKTLDG-------LTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQ 351 (376)
Q Consensus 281 --~V~~ld~~~~~W~~v~~lg~-------~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~~~ 351 (376)
..|.+|..+++|+++..=|+ |++ +-.+.-+-..++....++.|||-| +++|||++=+|+-+..
T Consensus 153 YkD~W~fd~~trkweql~~~g~PS~RSGHRMv-awK~~lilFGGFhd~nr~y~YyND-------vy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMV-AWKRQLILFGGFHDSNRDYIYYND-------VYAFDLDTYKWSKLEP 224 (521)
T ss_pred hhheeeeeeccchheeeccCCCCCCCccceeE-EeeeeEEEEcceecCCCceEEeee-------eEEEeccceeeeeccC
Confidence 58999999999999986542 221 000000001133344678888877 5799999999986665
Q ss_pred CCcc
Q 017173 352 CYDW 355 (376)
Q Consensus 352 ~~~~ 355 (376)
.|.|
T Consensus 225 sga~ 228 (521)
T KOG1230|consen 225 SGAG 228 (521)
T ss_pred CCCC
Confidence 5554
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.21 E-value=0.0088 Score=55.45 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=74.7
Q ss_pred EEEEEecCCCCeeeeccCCC-CCccccceeeeE-EeCCeEEEEccC------------CeEEEEeCCCCCceeeeeCCCC
Q 017173 181 AISTCHPGATEWVTDNYQNR-LPFVSSIWNKLV-FCNGIFYCLSLT------------GWLGVFDPVKRDWGVLVVPPPK 246 (376)
Q Consensus 181 ~~~~y~~~~~~W~~~~~~~~-~p~~~~~~~~~v-~~~G~~Y~l~~~------------~~i~~~D~~~~~~~~~~~p~p~ 246 (376)
.+.+|+-..++|+.+..+.. .| .....+| +-.|.+|..... ..++.||+.+..|..+..+-
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~p---Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-- 173 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPP---RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-- 173 (521)
T ss_pred eeeEEeccccceeEeccCCCcCC---CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC--
Confidence 57889999999998887532 23 2334444 445777776531 24899999999998776432
Q ss_pred CCcccccccccceeEEEEECCcEEEEEEecCCC------cEEEEEecCCccEEEeec
Q 017173 247 CPENFFAKNWWKGKFMVEHKGDILVIYTCCSEN------PIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 247 ~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~------~~V~~ld~~~~~W~~v~~ 297 (376)
+|.. ..+..+|...-+|++.+.+.+.. -.||.+|.++.+|.+++-
T Consensus 174 ~PS~------RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 174 GPSP------RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred CCCC------CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 3332 13456788888999988876521 368888999999999987
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.06 E-value=0.037 Score=54.43 Aligned_cols=194 Identities=12% Similarity=0.139 Sum_probs=110.9
Q ss_pred EEEEcCCCCceEEee----cCCC-CCCeEEEecCCeEEEEeCCC------CeEEEEcCCCcceecCCCccc-----ceeE
Q 017173 92 YEFYDPAQRKTYSLE----LPEL-YGSRVCYTKDSWLLLYRPRT------HRVFFFNPFTRDMIKLPRFEL-----TYQI 155 (376)
Q Consensus 92 ~~~~~~~~~~~~~~~----lp~~-~~~~~~~s~~G~ll~~~~~~------~~~~l~NP~T~~~~~LP~~~~-----~~~~ 155 (376)
..++|.....|-... .|.. .++.++ +-+..|++..+.. +.++.+|+.|++|..+.+... ....
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~-~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLS-AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEE-EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 445566665554321 3321 223332 3345555554432 379999999999987654322 1111
Q ss_pred EEeecCCCCCCeEEE-EEeccCC-CeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC-------Ce
Q 017173 156 VAFSCAPTSSSCVVF-TVKHISP-TVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT-------GW 226 (376)
Q Consensus 156 ~~l~~~p~~~~~~v~-~i~~~~~-~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-------~~ 226 (376)
++.. ++.+++ +-..... ....+++|+..+..|..+......|. ......++.++++++.+... +.
T Consensus 169 ~~~~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~D 242 (482)
T KOG0379|consen 169 ATVV-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGHAMVVVGNKLLVFGGGDDGDVYLND 242 (482)
T ss_pred EEEE-----CCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCceEEEECCeEEEEeccccCCceecc
Confidence 2211 122222 2111111 13458999999999999887544432 24567788888888876542 35
Q ss_pred EEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC----CcEEEEEecCCccEEEeeccC
Q 017173 227 LGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE----NPIIFKLDQSKMAWEEMKTLD 299 (376)
Q Consensus 227 i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~----~~~V~~ld~~~~~W~~v~~lg 299 (376)
+..+|+.+..|..+. +....|.. .....++..+-.+++++..... --.+|.||.++..|.++...+
T Consensus 243 ~~~ldl~~~~W~~~~-~~g~~p~~------R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 243 VHILDLSTWEWKLLP-TGGDLPSP------RSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eEeeecccceeeecc-ccCCCCCC------cceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 899999998886322 11111211 0223455444556666655442 246899999999999999887
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.81 E-value=0.078 Score=52.19 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=93.2
Q ss_pred EEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCC-------eEEEEeCCCCCceeeee-CCCCCCcccc
Q 017173 181 AISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTG-------WLGVFDPVKRDWGVLVV-PPPKCPENFF 252 (376)
Q Consensus 181 ~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~-------~i~~~D~~~~~~~~~~~-p~p~~~~~~~ 252 (376)
.+.+++..+..|.........|. ......++..+.++|.+.... .|.+||+.+..|..+.. ..+..+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~-~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r--- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPS-PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR--- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCC-cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc---
Confidence 37788888899987665433331 244566778888999887643 79999999999976532 1111111
Q ss_pred cccccceeEEEEECCcEEEEEEecC-C--CcEEEEEecCCccEEEeeccCCcEEEeeCCc-ccccCCCCccccCeEEEcc
Q 017173 253 AKNWWKGKFMVEHKGDILVIYTCCS-E--NPIIFKLDQSKMAWEEMKTLDGLTLFASFLS-SQSRADLPGIMRNSVYFSK 328 (376)
Q Consensus 253 ~~~~~~~~~Lv~~~G~LllV~~~~~-~--~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~-s~~~~~~~g~~~n~Iyf~~ 328 (376)
...-++..+..|++.+.... . ...+|.+|.++.+|.++...|..-- .+.+ ++. +-+|.++++-
T Consensus 165 -----~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~--pR~gH~~~------~~~~~~~v~g 231 (482)
T KOG0379|consen 165 -----AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS--PRYGHAMV------VVGNKLLVFG 231 (482)
T ss_pred -----ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC--CCCCceEE------EECCeEEEEe
Confidence 11223333444555444433 2 3578999999999999998774321 1111 111 1222222221
Q ss_pred ccc----CCceEEEEecCCceeecCCCCCccCC
Q 017173 329 VRF----FGKRCISYSLNDSRYYPRKQCYDWGE 357 (376)
Q Consensus 329 ~~~----~~~~~~vy~l~~~~~~~~~~~~~~~~ 357 (376)
... .-..+..+||.+..|......+++..
T Consensus 232 G~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~ 264 (482)
T KOG0379|consen 232 GGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPS 264 (482)
T ss_pred ccccCCceecceEeeecccceeeeccccCCCCC
Confidence 110 11235789999999996666666644
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.73 E-value=0.079 Score=46.54 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=97.3
Q ss_pred EEEEcCCCCceEEee----cCCCC-CCeEEEecCCeEEEEeC-------CCCeEEEEcCCCcceecC-----CCccccee
Q 017173 92 YEFYDPAQRKTYSLE----LPELY-GSRVCYTKDSWLLLYRP-------RTHRVFFFNPFTRDMIKL-----PRFELTYQ 154 (376)
Q Consensus 92 ~~~~~~~~~~~~~~~----lp~~~-~~~~~~s~~G~ll~~~~-------~~~~~~l~NP~T~~~~~L-----P~~~~~~~ 154 (376)
...|||..+.|.+.. +|... ++..|.- +.-.+++.+ -+++++++|-.|-+|..+ ||--..|.
T Consensus 107 Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH 185 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH 185 (392)
T ss_pred eeeeccccccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh
Confidence 345799999998754 44322 2222221 222333322 145799999999999765 33222221
Q ss_pred -EEEee-----cCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC----
Q 017173 155 -IVAFS-----CAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT---- 224 (376)
Q Consensus 155 -~~~l~-----~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~---- 224 (376)
+.++. +...+..+-.+...+.. -...+...+..++.|+.....+..|.. ....+.-.+||++|....-
T Consensus 186 ~a~~~~~~MYiFGGR~D~~gpfHs~~e~-Yc~~i~~ld~~T~aW~r~p~~~~~P~G-RRSHS~fvYng~~Y~FGGYng~l 263 (392)
T KOG4693|consen 186 TASVIDGMMYIFGGRSDESGPFHSIHEQ-YCDTIMALDLATGAWTRTPENTMKPGG-RRSHSTFVYNGKMYMFGGYNGTL 263 (392)
T ss_pred hhhhccceEEEeccccccCCCccchhhh-hcceeEEEeccccccccCCCCCcCCCc-ccccceEEEcceEEEecccchhh
Confidence 11111 11111111011000000 012566778899999977654444533 4456778899999998642
Q ss_pred ----CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEec
Q 017173 225 ----GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCC 276 (376)
Q Consensus 225 ----~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~ 276 (376)
..+..||+.+..|+.|... -..|.. .....-+.++|++++.+...
T Consensus 264 n~HfndLy~FdP~t~~W~~I~~~-Gk~P~a------RRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 264 NVHFNDLYCFDPKTSMWSVISVR-GKYPSA------RRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred hhhhcceeecccccchheeeecc-CCCCCc------ccceeEEEECCEEEEecCCC
Confidence 4699999999999988632 112221 12334566799999987643
No 34
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.03 E-value=0.49 Score=42.03 Aligned_cols=123 Identities=16% Similarity=0.232 Sum_probs=72.5
Q ss_pred CeEEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCccc-ceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCC
Q 017173 113 SRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFEL-TYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATE 191 (376)
Q Consensus 113 ~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~-~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~ 191 (376)
+-+|...+|=+....-..+.+..+||+++.--.+|.... .-.......+|.. -+++..... -.+..|++.+.+
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig----~~wittwg~--g~l~rfdPs~~s 265 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG----RAWITTWGT--GSLHRFDPSVTS 265 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC----cEEEeccCC--ceeeEeCccccc
Confidence 345666777776654334478999999997655655432 1111122223221 123332221 367789999999
Q ss_pred eeeeccCCCCCccccceeeeEEe--CCeEEEEc-cCCeEEEEeCCCCCceeeeeCCCC
Q 017173 192 WVTDNYQNRLPFVSSIWNKLVFC--NGIFYCLS-LTGWLGVFDPVKRDWGVLVVPPPK 246 (376)
Q Consensus 192 W~~~~~~~~~p~~~~~~~~~v~~--~G~~Y~l~-~~~~i~~~D~~~~~~~~~~~p~p~ 246 (376)
|.....+..-+ . -. .+++ .|+++.-. ..+.|..||+.+.+|++++.|.|.
T Consensus 266 W~eypLPgs~a---r-py-s~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 266 WIEYPLPGSKA---R-PY-SMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred ceeeeCCCCCC---C-cc-eeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence 99876542111 1 12 2333 45555433 368899999999999999877653
No 35
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.52 E-value=3.8 Score=37.70 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=92.4
Q ss_pred EEEEEecCCCCeeeeccCCCCCccccceeeeEEe-CCe-EEEEcc-CCeEEEEeCCC--CCceeeeeCCCCCCccccccc
Q 017173 181 AISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFC-NGI-FYCLSL-TGWLGVFDPVK--RDWGVLVVPPPKCPENFFAKN 255 (376)
Q Consensus 181 ~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~-~G~-~Y~l~~-~~~i~~~D~~~--~~~~~~~~p~p~~~~~~~~~~ 255 (376)
.+.+|+..++.=+..... .++. ......++++ ||+ .|+++. ++.|.+|..+. ..++.++.- ...|.+|....
T Consensus 168 ri~~y~~~dg~L~~~~~~-~v~~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i-~tlP~dF~g~~ 244 (346)
T COG2706 168 RIFLYDLDDGKLTPADPA-EVKP-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI-DTLPEDFTGTN 244 (346)
T ss_pred eEEEEEcccCcccccccc-ccCC-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee-ccCccccCCCC
Confidence 455676666654433221 1111 2345667877 565 687776 56677765554 566666532 23466665554
Q ss_pred ccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCce
Q 017173 256 WWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKR 335 (376)
Q Consensus 256 ~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~ 335 (376)
+....++ ..+|+-+-+.-...+.+.+|++|+.+++-+-+........| .+ .| .+ .--++.++.... +.+.
T Consensus 245 ~~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~--PR-~F---~i-~~~g~~Liaa~q--~sd~ 314 (346)
T COG2706 245 WAAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF--PR-DF---NI-NPSGRFLIAANQ--KSDN 314 (346)
T ss_pred ceeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC--Cc-cc---ee-CCCCCEEEEEcc--CCCc
Confidence 4334443 34677666655455689999999987764444332211111 00 00 00 113677777776 4666
Q ss_pred EEEEecC--CceeecCCCCCccCCCCCCCceeEeC
Q 017173 336 CISYSLN--DSRYYPRKQCYDWGEQDPFENIWIEP 368 (376)
Q Consensus 336 ~~vy~l~--~~~~~~~~~~~~~~~~~~~~~~w~~P 368 (376)
+.+|..+ +|+++.+.... . -.+|+|+..
T Consensus 315 i~vf~~d~~TG~L~~~~~~~---~--~p~Pvcv~f 344 (346)
T COG2706 315 ITVFERDKETGRLTLLGRYA---V--VPEPVCVKF 344 (346)
T ss_pred EEEEEEcCCCceEEeccccc---C--CCCcEEEEE
Confidence 7788876 45666553211 1 145788864
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.01 E-value=0.28 Score=30.90 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=33.0
Q ss_pred eEEEEECCcEEEEEEecC-CC--cEEEEEecCCccEEEeeccC
Q 017173 260 KFMVEHKGDILVIYTCCS-EN--PIIFKLDQSKMAWEEMKTLD 299 (376)
Q Consensus 260 ~~Lv~~~G~LllV~~~~~-~~--~~V~~ld~~~~~W~~v~~lg 299 (376)
...+..+|+|++++.... .. -.|+++|.++.+|+++.+|+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 356778999999998776 33 47899999999999999875
No 37
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.13 E-value=5.4 Score=34.68 Aligned_cols=218 Identities=14% Similarity=0.191 Sum_probs=106.7
Q ss_pred EEEEEcCCCC-ceEEeecCCCCCCeEE-Ee-cCCeEEEEeCCCCeEEEEcCCCccee---cCCCcccceeEEEeecCCCC
Q 017173 91 LYEFYDPAQR-KTYSLELPELYGSRVC-YT-KDSWLLLYRPRTHRVFFFNPFTRDMI---KLPRFELTYQIVAFSCAPTS 164 (376)
Q Consensus 91 ~~~~~~~~~~-~~~~~~lp~~~~~~~~-~s-~~G~ll~~~~~~~~~~l~NP~T~~~~---~LP~~~~~~~~~~l~~~p~~ 164 (376)
....+|+.++ ...+..+..-...... .. .+|.++.... ...++.+|+.||+.+ .++..... . ....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~-~-~~~~----- 75 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG-DGNLYALDAKTGKVLWRFDLPGPISG-A-PVVD----- 75 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET-TSEEEEEETTTSEEEEEEECSSCGGS-G-EEEE-----
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC-CCEEEEEECCCCCEEEEeeccccccc-e-eeec-----
Confidence 3566788554 3444554221122221 33 6788887754 348999999999854 34322111 1 1111
Q ss_pred CCeEEEEEeccCCCeEEEEEEec--CCCCeee-eccCCCCCccccceeeeEEeCCeEEEEccCCeEEEEeCCCCC--cee
Q 017173 165 SSCVVFTVKHISPTVVAISTCHP--GATEWVT-DNYQNRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRD--WGV 239 (376)
Q Consensus 165 ~~~~v~~i~~~~~~~~~~~~y~~--~~~~W~~-~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~ 239 (376)
++. +++... . + .+..++. |.-.|+. ....+..+ ........+.++.+|+....+.|.++|+.++. |..
T Consensus 76 ~~~-v~v~~~-~-~--~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 76 GGR-VYVGTS-D-G--SLYALDAKTGKVLWSIYLTSSPPAG--VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp TTE-EEEEET-T-S--EEEEEETTTSCEEEEEEE-SSCTCS--TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ccc-cccccc-e-e--eeEecccCCcceeeeeccccccccc--cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 121 222221 1 1 3444553 3447884 33211111 11233445558889988889999999999774 432
Q ss_pred eeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCcc--EEEeeccCCcEEEeeCCcccccCCCC
Q 017173 240 LVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMA--WEEMKTLDGLTLFASFLSSQSRADLP 317 (376)
Q Consensus 240 ~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~--W~~v~~lg~~~lFlg~~~s~~~~~~~ 317 (376)
- ...+.......... .....++..+|.+++... +.. ++.+|.++.+ | +.. +.+..- .+
T Consensus 149 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~--~g~--~~~~d~~tg~~~w-~~~-~~~~~~------------~~ 208 (238)
T PF13360_consen 149 P-VGEPRGSSPISSFS-DINGSPVISDGRVYVSSG--DGR--VVAVDLATGEKLW-SKP-ISGIYS------------LP 208 (238)
T ss_dssp E-SSTT-SS--EEEET-TEEEEEECCTTEEEEECC--TSS--EEEEETTTTEEEE-EEC-SS-ECE------------CE
T ss_pred e-cCCCCCCcceeeec-ccccceEEECCEEEEEcC--CCe--EEEEECCCCCEEE-Eec-CCCccC------------Cc
Confidence 1 22221111100000 011233333563333222 122 6666776654 7 333 444111 01
Q ss_pred ccccCeEEEcccccCCceEEEEecCCcee
Q 017173 318 GIMRNSVYFSKVRFFGKRCISYSLNDSRY 346 (376)
Q Consensus 318 g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~ 346 (376)
...++.+|+... .+.+.++|+++++.
T Consensus 209 ~~~~~~l~~~~~---~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 209 SVDGGTLYVTSS---DGRLYALDLKTGKV 234 (238)
T ss_dssp ECCCTEEEEEET---TTEEEEEETTTTEE
T ss_pred eeeCCEEEEEeC---CCEEEEEECCCCCE
Confidence 236788888873 56788999999874
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.07 E-value=3.5 Score=41.17 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCCCccHHHHHHHHhcCCcccceehhccccccccCccccC
Q 017173 33 LHDWSELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISVR 74 (376)
Q Consensus 33 ~~~Ws~LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~~ 74 (376)
..--+.||.|+...|+..|+.++++..+.||+.|+.++....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccc
Confidence 344578999999999999999999999999999999997753
No 39
>PF13964 Kelch_6: Kelch motif
Probab=92.91 E-value=0.22 Score=32.02 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.3
Q ss_pred EEEEECCcEEEEEEecC-C--CcEEEEEecCCccEEEeeccCC
Q 017173 261 FMVEHKGDILVIYTCCS-E--NPIIFKLDQSKMAWEEMKTLDG 300 (376)
Q Consensus 261 ~Lv~~~G~LllV~~~~~-~--~~~V~~ld~~~~~W~~v~~lg~ 300 (376)
.+|..+|+|++++.... . .-.|+++|.++.+|+++.+|+.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 46778999999988655 2 2568888999999999998863
No 40
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.26 E-value=0.035 Score=49.89 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=34.3
Q ss_pred CCCccHHHHHHHHhcC-----CcccceehhccccccccCccccCC
Q 017173 36 WSELPAELLELIMCHL-----TLEDNVHASVVCKKWHAPAISVRV 75 (376)
Q Consensus 36 Ws~LP~dll~~Il~rL-----p~~~l~r~r~VCk~Wrs~~~~~~~ 75 (376)
.+.||+|+|.+|++++ ...++-++++|||.|+-.+.++.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~l 151 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPEL 151 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHH
Confidence 4679999999999885 358999999999999999887653
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.02 E-value=0.45 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=30.2
Q ss_pred EEEEECCcEEEEEEe-c--C--CCcEEEEEecCCccEEEeeccC
Q 017173 261 FMVEHKGDILVIYTC-C--S--ENPIIFKLDQSKMAWEEMKTLD 299 (376)
Q Consensus 261 ~Lv~~~G~LllV~~~-~--~--~~~~V~~ld~~~~~W~~v~~lg 299 (376)
..+..+++|++++.. . . ....|+.+|.++.+|+++..+|
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 346678999999887 1 1 1257888999999999998775
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=91.23 E-value=0.05 Score=49.36 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=34.4
Q ss_pred CCcc----HHHHHHHHhcCCcccceehhccccccccCcccc
Q 017173 37 SELP----AELLELIMCHLTLEDNVHASVVCKKWHAPAISV 73 (376)
Q Consensus 37 s~LP----~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 73 (376)
+.|| +++.+.||+.|...+|..+..|||+|+.++..+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence 3589 999999999999999999999999999999875
No 43
>PF13964 Kelch_6: Kelch motif
Probab=91.14 E-value=0.54 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=27.6
Q ss_pred eeeeEEeCCeEEEEccC-------CeEEEEeCCCCCceeee
Q 017173 208 WNKLVFCNGIFYCLSLT-------GWLGVFDPVKRDWGVLV 241 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~-------~~i~~~D~~~~~~~~~~ 241 (376)
...++.++|++|++... ..+.+||+.+++|+.+.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 44678999999998652 46899999999998763
No 44
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=90.18 E-value=0.67 Score=28.13 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.3
Q ss_pred eeeeEEeCCeEEEEccCCeEEEEeCCC
Q 017173 208 WNKLVFCNGIFYCLSLTGWLGVFDPVK 234 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~~~i~~~D~~~ 234 (376)
...+++.+|.+|+.+.++.+.++|.++
T Consensus 14 ~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 355688999999999999999999864
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.53 E-value=1.2 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.5
Q ss_pred eeeeEEeCCeEEEEccC-------CeEEEEeCCCCCceeee
Q 017173 208 WNKLVFCNGIFYCLSLT-------GWLGVFDPVKRDWGVLV 241 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~-------~~i~~~D~~~~~~~~~~ 241 (376)
...++.++|++|++... ..+.+||+.++.|..+.
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 45689999999998642 35899999999998763
No 46
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.36 E-value=24 Score=33.67 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.0
Q ss_pred eeEEeCCeEEEEccCCeEEEEeCCCCC
Q 017173 210 KLVFCNGIFYCLSLTGWLGVFDPVKRD 236 (376)
Q Consensus 210 ~~v~~~G~~Y~l~~~~~i~~~D~~~~~ 236 (376)
.++..+|.+|+.+.++.++++|..++.
T Consensus 289 ~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 289 DFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 467789999999999999999998753
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.94 E-value=25 Score=33.49 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=57.8
Q ss_pred eeeEEeCCeEEEEccCCeEEEEeCCCCC--ceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEe
Q 017173 209 NKLVFCNGIFYCLSLTGWLGVFDPVKRD--WGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLD 286 (376)
Q Consensus 209 ~~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld 286 (376)
..+++.+|.+|+.+.++.+.++|+.++. |+.- ...+ ..++..+|.|+++.. +=.|+.+|
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~~--------------~~~~~~~~~vy~~~~----~g~l~ald 310 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGSV--------------NDFAVDGGRIYLVDQ----NDRVYALD 310 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCCc--------------cCcEEECCEEEEEcC----CCeEEEEE
Confidence 4567889999999999999999998764 5321 1000 012334555555432 12455556
Q ss_pred cCC--ccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCcee
Q 017173 287 QSK--MAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRY 346 (376)
Q Consensus 287 ~~~--~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~ 346 (376)
.++ ..|..-. +++.. .+ -|-+.++.||+.+. .+.+.++|.++++.
T Consensus 311 ~~tG~~~W~~~~-~~~~~--------~~---sp~v~~g~l~v~~~---~G~l~~ld~~tG~~ 357 (394)
T PRK11138 311 TRGGVELWSQSD-LLHRL--------LT---APVLYNGYLVVGDS---EGYLHWINREDGRF 357 (394)
T ss_pred CCCCcEEEcccc-cCCCc--------cc---CCEEECCEEEEEeC---CCEEEEEECCCCCE
Confidence 543 3364311 11110 00 13346778888764 34566777777753
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=86.40 E-value=2 Score=27.29 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.8
Q ss_pred eeeeEEeCCeEEEEccC---------CeEEEEeCCCCCceeee
Q 017173 208 WNKLVFCNGIFYCLSLT---------GWLGVFDPVKRDWGVLV 241 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~---------~~i~~~D~~~~~~~~~~ 241 (376)
...++..++++|++... ..+.+||+.+.+|+.+.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 45678889999998643 35899999999998753
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.15 E-value=2.1 Score=27.10 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCcEEEEEEecCC-C--cEEEEEecCCccEEEeeccC
Q 017173 266 KGDILVIYTCCSE-N--PIIFKLDQSKMAWEEMKTLD 299 (376)
Q Consensus 266 ~G~LllV~~~~~~-~--~~V~~ld~~~~~W~~v~~lg 299 (376)
++.|++++..... . -.+|.+|.++++|.++.++|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4788888776543 2 36889999999999997765
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=86.12 E-value=11 Score=32.97 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=61.0
Q ss_pred EeCCeEEEEccCCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEE--ECCc--EEEEEEec----CCCcEEEE
Q 017173 213 FCNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVE--HKGD--ILVIYTCC----SENPIIFK 284 (376)
Q Consensus 213 ~~~G~~Y~l~~~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~--~~G~--LllV~~~~----~~~~~V~~ 284 (376)
.|||.+ ++.....+.++||.++++..++. |..+..+. . .....+.- ..++ ++.+.... ...+.||.
T Consensus 3 sCnGLl-c~~~~~~~~V~NP~T~~~~~LP~--~~~~~~~~-~--~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSYGKRLVVWNPSTGQSRWLPT--PKSRRSNK-E--SDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEecCCcEEEECCCCCCEEecCC--CCCccccc-c--cceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 588988 55545789999999998876642 22111100 0 00011111 1122 22222211 12356665
Q ss_pred EecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccC--C-ceEEEEecCCceee
Q 017173 285 LDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFF--G-KRCISYSLNDSRYY 347 (376)
Q Consensus 285 ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~--~-~~~~vy~l~~~~~~ 347 (376)
+ .+.+|+++...+.... . . .. .-..++.+|+...... . ..+..|||++.++.
T Consensus 77 ~--~~~~Wr~~~~~~~~~~-~-~------~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~ 131 (230)
T TIGR01640 77 L--GSNSWRTIECSPPHHP-L-K------SR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK 131 (230)
T ss_pred e--CCCCccccccCCCCcc-c-c------CC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe
Confidence 5 6678999874332211 1 0 01 1235667888754221 1 15789999998877
No 51
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.11 E-value=33 Score=32.06 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=72.9
Q ss_pred ceeeeEEe-CC-eEEEEcc-CCeEEEEeCC--CCCceeeeeCCCCCCcccccccccceeEE-EEECCcEEEEEEecCCCc
Q 017173 207 IWNKLVFC-NG-IFYCLSL-TGWLGVFDPV--KRDWGVLVVPPPKCPENFFAKNWWKGKFM-VEHKGDILVIYTCCSENP 280 (376)
Q Consensus 207 ~~~~~v~~-~G-~~Y~l~~-~~~i~~~D~~--~~~~~~~~~p~p~~~~~~~~~~~~~~~~L-v~~~G~LllV~~~~~~~~ 280 (376)
....+++. +| .+|++.. .+.|.+|+.. ...++.++.- +..|..+.... ...-+ +.-+|+.+.|.....+.+
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~--~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTGEN--APAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCSSS--SEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-eeccccccccC--CceeEEEecCCCEEEEEeccCCEE
Confidence 34556666 44 5888765 5778888887 4445443311 11111111010 12223 334688777777667889
Q ss_pred EEEEEecCCccEEEeeccCCcEEEeeCC-cccccCCCCccccCeEEEcccccCCceEEEEec--CCceeecCC
Q 017173 281 IIFKLDQSKMAWEEMKTLDGLTLFASFL-SSQSRADLPGIMRNSVYFSKVRFFGKRCISYSL--NDSRYYPRK 350 (376)
Q Consensus 281 ~V~~ld~~~~~W~~v~~lg~~~lFlg~~-~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l--~~~~~~~~~ 350 (376)
.||++|.++++.+.+..++-. |.. ..+.. .-.++.+|.... ..+.+.+|++ +++.+....
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~----G~~Pr~~~~----s~~g~~l~Va~~--~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTG----GKFPRHFAF----SPDGRYLYVANQ--DSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEES----SSSEEEEEE-----TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCC----CCCccEEEE----eCCCCEEEEEec--CCCeEEEEEEeCCCCcEEEec
Confidence 999999887766666543210 100 00111 115788998876 4667888877 477777654
No 52
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=84.31 E-value=0.5 Score=43.25 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=34.9
Q ss_pred CCCCCccHHHHHHHHhcCCc--------ccceehhccccccccCcccc
Q 017173 34 HDWSELPAELLELIMCHLTL--------EDNVHASVVCKKWHAPAISV 73 (376)
Q Consensus 34 ~~Ws~LP~dll~~Il~rLp~--------~~l~r~r~VCk~Wrs~~~~~ 73 (376)
..|++||.++|.+|+.+..- ++.+.+..||+.||......
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 78999999999999999862 36899999999999987653
No 53
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.92 E-value=3.1 Score=23.63 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.4
Q ss_pred eEEeCCeEEEEccCCeEEEEeCCCCC
Q 017173 211 LVFCNGIFYCLSLTGWLGVFDPVKRD 236 (376)
Q Consensus 211 ~v~~~G~~Y~l~~~~~i~~~D~~~~~ 236 (376)
.+..+|.+|+.+.++.|.++|.+++.
T Consensus 2 ~~~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred cEEECCEEEEEcCCCEEEEEEcccCc
Confidence 35678899999889999999997653
No 54
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.93 E-value=45 Score=31.18 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=86.3
Q ss_pred EEEecC-CeEEEEeCCCCeEEEEcC--CCcce-----ecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEe
Q 017173 115 VCYTKD-SWLLLYRPRTHRVFFFNP--FTRDM-----IKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCH 186 (376)
Q Consensus 115 ~~~s~~-G~ll~~~~~~~~~~l~NP--~T~~~-----~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~ 186 (376)
+..+.+ .+|+..+-..+.+.+++- -+++. +.+|+-.-+ ..++|..+ +. .++++++... .+...-++
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP-Rh~~f~pd---g~-~~Yv~~e~s~-~v~v~~~~ 222 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP-RHLAFSPD---GK-YAYVVNELSN-TVSVFDYD 222 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE-EEEEE-TT---SS-EEEEEETTTT-EEEEEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC-cEEEEcCC---cC-EEEEecCCCC-cEEEEeec
Confidence 334544 466666655556666554 44322 234433222 23555432 23 3445555443 33334445
Q ss_pred cCCCCeeeeccCCCCCcc---ccceeeeEEe-CCe-EEEEcc-CCeEEEEeCCC--CCceeeeeCCCCCCcccccccccc
Q 017173 187 PGATEWVTDNYQNRLPFV---SSIWNKLVFC-NGI-FYCLSL-TGWLGVFDPVK--RDWGVLVVPPPKCPENFFAKNWWK 258 (376)
Q Consensus 187 ~~~~~W~~~~~~~~~p~~---~~~~~~~v~~-~G~-~Y~l~~-~~~i~~~D~~~--~~~~~~~~p~p~~~~~~~~~~~~~ 258 (376)
..++.++.+.....+|.. .....++++. +|+ +|+-.. .+.|.+|+++. +..+.+..- +.... .
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~--------~ 293 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGK--------F 293 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSS--------S
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCC--------C
Confidence 446667655542222211 1133444444 676 565544 56799999854 344443221 10000 1
Q ss_pred ee-EEEEECCcEEEEEEecCCCcEEEEEecCCccEEEee
Q 017173 259 GK-FMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMK 296 (376)
Q Consensus 259 ~~-~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~ 296 (376)
.+ ..+.-+|+.++|....++.+.||++|.+++.+..+.
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 12 234457999999888888899999999998888775
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.16 E-value=53 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.5
Q ss_pred eeeEEeCCeEEEEccCCeEEEEeCCCCC
Q 017173 209 NKLVFCNGIFYCLSLTGWLGVFDPVKRD 236 (376)
Q Consensus 209 ~~~v~~~G~~Y~l~~~~~i~~~D~~~~~ 236 (376)
..+++.+|.+|+.+..+.+.+||+.++.
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 3467789999999999999999998754
No 56
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=78.86 E-value=4.4 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=18.1
Q ss_pred CCeEEEEeCC------CCeEEEEcCCCcceecCCCcc
Q 017173 120 DSWLLLYRPR------THRVFFFNPFTRDMIKLPRFE 150 (376)
Q Consensus 120 ~G~ll~~~~~------~~~~~l~NP~T~~~~~LP~~~ 150 (376)
++-+++..+. .+++.++|+.|++|..+|++|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4555555432 246899999999999998775
No 57
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=77.92 E-value=54 Score=30.10 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=33.3
Q ss_pred ecCcEEEEEcCCCCceEEeecCCC-CCCeEEEecCCeEEEEeCCCCeEEEEcCCCcc
Q 017173 87 KFGNLYEFYDPAQRKTYSLELPEL-YGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRD 142 (376)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~ 142 (376)
..+....+||..+.+.-++=--.. +-..++=|.+|..++.......+.+||.+.|.
T Consensus 42 c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 333456778887766433211111 11233337788777765555689999999987
No 58
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.47 E-value=69 Score=30.66 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=77.2
Q ss_pred CCeEEEEEeccCCCeEEEEEEecCCC-----CeeeeccCCCCCccccceeeeEEeCCeEEEEcc----CCeEEEEeCCCC
Q 017173 165 SSCVVFTVKHISPTVVAISTCHPGAT-----EWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSL----TGWLGVFDPVKR 235 (376)
Q Consensus 165 ~~~~v~~i~~~~~~~~~~~~y~~~~~-----~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~----~~~i~~~D~~~~ 235 (376)
+.|+++....... ...+.+.+..++ .|+.+... .. .....+-..++.||+++. .+.|+.+++...
T Consensus 238 ~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~--~~---~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~ 311 (414)
T PF02897_consen 238 GRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR--ED---GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADP 311 (414)
T ss_dssp SSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES--SS---S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTST
T ss_pred ccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC--CC---ceEEEEEccCCEEEEeeCCCCCCcEEEEeccccc
Confidence 3454444433222 245555555543 67665432 11 234455667889999876 367999998875
Q ss_pred C---ceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecC-CccEEEeeccCCcEEEeeCCccc
Q 017173 236 D---WGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQS-KMAWEEMKTLDGLTLFASFLSSQ 311 (376)
Q Consensus 236 ~---~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~-~~~W~~v~~lg~~~lFlg~~~s~ 311 (376)
. |..+-.+.. ... .-..+...++.|++... ....-.|..+|.. +..-.++.-.+..++. + .
T Consensus 312 ~~~~~~~~l~~~~--~~~-------~l~~~~~~~~~Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~-~----~ 376 (414)
T PF02897_consen 312 SPAEWWTVLIPED--EDV-------SLEDVSLFKDYLVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVS-G----V 376 (414)
T ss_dssp SGGGEEEEEE--S--SSE-------EEEEEEEETTEEEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEE-E----E
T ss_pred ccccceeEEcCCC--Cce-------eEEEEEEECCEEEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEe-c----c
Confidence 4 443322221 110 01122224555555544 3333334444555 3222222222211111 1 1
Q ss_pred ccCCCCccccCeEEEccccc-CCceEEEEecCCceeecCC
Q 017173 312 SRADLPGIMRNSVYFSKVRF-FGKRCISYSLNDSRYYPRK 350 (376)
Q Consensus 312 ~~~~~~g~~~n~Iyf~~~~~-~~~~~~vy~l~~~~~~~~~ 350 (376)
+. .-.+|.++|.-.+. ....++.||+++++.+..+
T Consensus 377 ~~----~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 377 SG----DFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ES-----TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CC----CCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 11 12578888876432 2567889999999887653
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.66 E-value=48 Score=31.93 Aligned_cols=148 Identities=13% Similarity=0.135 Sum_probs=80.8
Q ss_pred CCCCCceEEEEeecCcEEEEEcCCCC---ceEEeecCCCCCCeEEEecCCe-EEEEeCCCCeEEEEcCCCcceecCCCcc
Q 017173 75 VVNQSPWLMYFPKFGNLYEFYDPAQR---KTYSLELPELYGSRVCYTKDSW-LLLYRPRTHRVFFFNPFTRDMIKLPRFE 150 (376)
Q Consensus 75 ~~~~~P~l~~~~~~~~~~~~~~~~~~---~~~~~~lp~~~~~~~~~s~~G~-ll~~~~~~~~~~l~NP~T~~~~~LP~~~ 150 (376)
|-+..|.|+....+ +...+|-..+. +...+.+-.++-.....+.+|- .++......-++.+|..|++...|-++.
T Consensus 221 FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred ecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence 55566777654333 45677766654 3455555555544444566776 5555444446899999999987765442
Q ss_pred cce--eEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEe-CC-eEEEEccCCe
Q 017173 151 LTY--QIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFC-NG-IFYCLSLTGW 226 (376)
Q Consensus 151 ~~~--~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~-~G-~~Y~l~~~~~ 226 (376)
..- ..--|..++. +.++++.-+ . ..|.+....+++|...-.. + ....+..+. +| .+|+.+.+|.
T Consensus 300 g~e~~~~e~FeVShd-~~fia~~G~--~---G~I~lLhakT~eli~s~Ki---e---G~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHD-SNFIAIAGN--N---GHIHLLHAKTKELITSFKI---E---GVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred CcccchhheeEecCC-CCeEEEccc--C---ceEEeehhhhhhhhheeee---c---cEEeeEEEecCCcEEEEEcCCce
Confidence 211 1111222221 234444321 1 1455555667777532221 1 112232222 44 5777888999
Q ss_pred EEEEeCCCC
Q 017173 227 LGVFDPVKR 235 (376)
Q Consensus 227 i~~~D~~~~ 235 (376)
+++||+...
T Consensus 368 V~v~nl~~~ 376 (514)
T KOG2055|consen 368 VYVWNLRQN 376 (514)
T ss_pred EEEEecCCc
Confidence 999999976
No 60
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.60 E-value=56 Score=32.68 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=63.3
Q ss_pred eeeEEeCCeEEEEccCCeEEEEeCCCCC--ceeee-eCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEE
Q 017173 209 NKLVFCNGIFYCLSLTGWLGVFDPVKRD--WGVLV-VPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKL 285 (376)
Q Consensus 209 ~~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~~~-~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~l 285 (376)
..+++.+|.+|+.+..+.|.++|..++. |+.-. .+....+.. .......-++..+|.+++.. .+-.|+.|
T Consensus 63 stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~---~~~~~~rg~av~~~~v~v~t----~dg~l~AL 135 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVM---CCDVVNRGVALYDGKVFFGT----LDARLVAL 135 (527)
T ss_pred cCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccc---ccccccccceEECCEEEEEc----CCCEEEEE
Confidence 4567889999999888999999998753 65321 111000000 00000111223355555432 23368888
Q ss_pred ecCCc--cEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEccccc---CCceEEEEecCCce
Q 017173 286 DQSKM--AWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRF---FGKRCISYSLNDSR 345 (376)
Q Consensus 286 d~~~~--~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~---~~~~~~vy~l~~~~ 345 (376)
|.+++ .|+.- +++... +. .+ ..-|-+.+|.||+..... ....+..||.++++
T Consensus 136 Da~TGk~~W~~~--~~~~~~--~~--~~--tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 136 DAKTGKVVWSKK--NGDYKA--GY--TI--TAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ECCCCCEEeecc--cccccc--cc--cc--cCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 88654 36532 222111 00 01 111345677788764211 14567889998886
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=76.56 E-value=4.3 Score=25.74 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=23.6
Q ss_pred CcEEEEEEec--CCC--cEEEEEecCCccEEEeeccCC
Q 017173 267 GDILVIYTCC--SEN--PIIFKLDQSKMAWEEMKTLDG 300 (376)
Q Consensus 267 G~LllV~~~~--~~~--~~V~~ld~~~~~W~~v~~lg~ 300 (376)
+++++++... ... -++|++|..+.+|+++.+++.
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 4566665544 222 468999999999999976653
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=76.53 E-value=46 Score=31.18 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=65.4
Q ss_pred eCCeEEEEccCCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCC---------CcEEEE
Q 017173 214 CNGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSE---------NPIIFK 284 (376)
Q Consensus 214 ~~G~~Y~l~~~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~---------~~~V~~ 284 (376)
.+.++.+++..+.+++||..+.... ..|....|. .....+.-+|+|++....... .|++..
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~--~~P~l~~pk--------~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVA--TGPRLHSPK--------RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEe--ccCCCCCCC--------cceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 5778888888889999999987543 222221121 223445568889988775431 344543
Q ss_pred Ee--------cCCccEEEeeccCCcEEEeeCCc-c-cccCCCCccccCeEEEcccccCCceEEEEecCCceeecC
Q 017173 285 LD--------QSKMAWEEMKTLDGLTLFASFLS-S-QSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPR 349 (376)
Q Consensus 285 ld--------~~~~~W~~v~~lg~~~lFlg~~~-s-~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~ 349 (376)
.+ .....|..+-. -- |..... . .....|.-..|..||+..... ....+.||.++++|+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PP-f~~~~~~~~~~i~sYavv~g~~I~vS~~~~-~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PP-FVRDRRYSDYRITSYAVVDGRTIFVSVNGR-RWGTYSFDTESHEWRKH 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CC-ccccCCcccceEEEEEEecCCeEEEEecCC-ceEEEEEEcCCcceeec
Confidence 33 12345666433 22 332211 0 001122111378899966421 12346777778888875
No 63
>PRK04043 tolB translocation protein TolB; Provisional
Probab=76.07 E-value=78 Score=30.61 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=60.1
Q ss_pred CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccEEEeeccCCcEEE
Q 017173 225 GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLF 304 (376)
Q Consensus 225 ~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lF 304 (376)
..|+++|+.++.-+.+.. .+ .. ....-..-+|+-+++......+.+||.+|.+++.++++...++...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~-~~---g~-------~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~- 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS-SQ---GM-------LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDV- 280 (419)
T ss_pred CEEEEEECCCCcEEEEec-CC---Cc-------EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccC-
Confidence 469999998765444321 11 10 0001122356544444444566889999988888888876554110
Q ss_pred eeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeecC
Q 017173 305 ASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPR 349 (376)
Q Consensus 305 lg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~ 349 (376)
...+ .-.|+.|||..+......+++++++.+....+
T Consensus 281 ---~p~~------SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 281 ---NGNF------VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred ---ccEE------CCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 0011 11477888887654444677888887776443
No 64
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.93 E-value=18 Score=33.66 Aligned_cols=107 Identities=15% Similarity=0.199 Sum_probs=60.1
Q ss_pred EEEEEecCCCCeeeeccCCCCCccccceeeeEEeCC-eEEEEcc------------------------------------
Q 017173 181 AISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNG-IFYCLSL------------------------------------ 223 (376)
Q Consensus 181 ~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G-~~Y~l~~------------------------------------ 223 (376)
.+..|++.+++|...+... |....... .+.+++ ++|+...
T Consensus 114 d~Y~y~p~~nsW~kl~t~s--P~gl~G~~-~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 114 DAYRYDPSTNSWHKLDTRS--PTGLVGAS-TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeEEecCCCChhheecccc--ccccccce-eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 4678999999999887632 21112222 233333 6666531
Q ss_pred ----CCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecC---CC--cEEEEEecCCccEEE
Q 017173 224 ----TGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS---EN--PIIFKLDQSKMAWEE 294 (376)
Q Consensus 224 ----~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~---~~--~~V~~ld~~~~~W~~ 294 (376)
...+++||+.+..|+.+-.- |..+. +..-.+--+++|.+|..... +. ..+..+.....+|.+
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~-pf~~~--------aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGEN-PFYGN--------AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred HhcccccccccccccchhhhcCcC-cccCc--------cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 01378888888888765321 11111 22223333456888876443 22 344444556788999
Q ss_pred eeccC
Q 017173 295 MKTLD 299 (376)
Q Consensus 295 v~~lg 299 (376)
+..++
T Consensus 262 l~~lp 266 (381)
T COG3055 262 LSDLP 266 (381)
T ss_pred ccCCC
Confidence 97764
No 65
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=75.78 E-value=66 Score=29.65 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=75.2
Q ss_pred cceeeeEEeCCeEEEEccC-CeEEEEeCCCCCceeeeeC-CCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEE
Q 017173 206 SIWNKLVFCNGIFYCLSLT-GWLGVFDPVKRDWGVLVVP-PPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIF 283 (376)
Q Consensus 206 ~~~~~~v~~~G~~Y~l~~~-~~i~~~D~~~~~~~~~~~p-~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~ 283 (376)
-..+|+++.+|.+++++.. ..|..+|..-. | .+.- ||... ....++...-.-|...+|+.--|......
T Consensus 103 idiHdia~~~~~l~fVNT~fSCLatl~~~~S-F--~P~WkPpFIs-~la~eDRCHLNGlA~~~g~p~yVTa~~~s----- 173 (335)
T TIGR03032 103 IDAHDLALGAGRLLFVNTLFSCLATVSPDYS-F--VPLWKPPFIS-KLAPEDRCHLNGMALDDGEPRYVTALSQS----- 173 (335)
T ss_pred cchhheeecCCcEEEEECcceeEEEECCCCc-c--ccccCCcccc-ccCccCceeecceeeeCCeEEEEEEeecc-----
Confidence 3567888877788887654 56888887632 2 2111 11111 01101111112355567887666553321
Q ss_pred EEecCCccEEEeeccCCcEEEeeCCcc----cccCCCCccccCeEEEcccccCCceEEEEecCCceeecCCC
Q 017173 284 KLDQSKMAWEEMKTLDGLTLFASFLSS----QSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPRKQ 351 (376)
Q Consensus 284 ~ld~~~~~W~~v~~lg~~~lFlg~~~s----~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~~~ 351 (376)
| ...-|++-..-|+..+=+..+.- ++.++-|.+-.+.+||.+- ..+++..+|.++|+..+...
T Consensus 174 --D-~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvlds--gtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 174 --D-VADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLLNS--GRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred --C-CcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEEEC--CCCEEEEEcCCCCcEEEEEE
Confidence 1 23347766666665554544432 2234457778999999986 57788899988888776543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=74.75 E-value=0.95 Score=42.73 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=33.3
Q ss_pred CccHHHHHHHHhcCCcccceehhccccccccCcccc
Q 017173 38 ELPAELLELIMCHLTLEDNVHASVVCKKWHAPAISV 73 (376)
Q Consensus 38 ~LP~dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 73 (376)
.||.|++..|++.|..+++.+.+.||+.|+-.+.+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 489999999999999999999999999999888764
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=72.44 E-value=86 Score=29.40 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=61.9
Q ss_pred cCCeEEEEeCCCCeEEEEcCCCcceecCCCcccce-eEEEeecCCCCCCeEEEEEeccCCC---------eEEEEEEec-
Q 017173 119 KDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTY-QIVAFSCAPTSSSCVVFTVKHISPT---------VVAISTCHP- 187 (376)
Q Consensus 119 ~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~~-~~~~l~~~p~~~~~~v~~i~~~~~~---------~~~~~~y~~- 187 (376)
.+..+++.+.. ....|+|+-|.....+|.+.... .-+.+.. ++ .++++...... ..+...|++
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~pk~~pisv~V----G~-~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHSPKRCPISVSV----GD-KLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCCCCcceEEEEe----CC-eEEEeeccCccccccCccceeEEEeccccc
Confidence 46677776554 46899999999999999875421 1122221 11 13343322110 223344542
Q ss_pred -----CC--CCeeeeccCCCCCccccc----eeeeEEeCCeEEEEccC-C--eEEEEeCCCCCceee
Q 017173 188 -----GA--TEWVTDNYQNRLPFVSSI----WNKLVFCNGIFYCLSLT-G--WLGVFDPVKRDWGVL 240 (376)
Q Consensus 188 -----~~--~~W~~~~~~~~~p~~~~~----~~~~v~~~G~~Y~l~~~-~--~i~~~D~~~~~~~~~ 240 (376)
.. -+|...+.+| +...... +..-++++|.--|+... . +.++||..+.+|+..
T Consensus 149 ~~~~~~~~~w~W~~LP~PP-f~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPP-FVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred cccccCCCcceEEcCCCCC-ccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 22 2667665543 3211110 33333337765555443 3 699999999999754
No 68
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=71.34 E-value=52 Score=29.33 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=50.2
Q ss_pred eeeeEEeCCeEEEEcc-CCeEEEEeCCCCCce-eeeeCCCCCCc--ccccccccceeEEEEECCcEEEEEEecC--CCcE
Q 017173 208 WNKLVFCNGIFYCLSL-TGWLGVFDPVKRDWG-VLVVPPPKCPE--NFFAKNWWKGKFMVEHKGDILVIYTCCS--ENPI 281 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~-~~~i~~~D~~~~~~~-~~~~p~p~~~~--~~~~~~~~~~~~Lv~~~G~LllV~~~~~--~~~~ 281 (376)
-.+-|++||.||.-.. +..|..||+.++.-. ...+|...... .+.. ......-|...+..|.+|..... +.+.
T Consensus 71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~-~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYW-SGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceec-CCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 3456789999988654 678999999998654 33333221110 0111 11123445555677888877654 3589
Q ss_pred EEEEecCC
Q 017173 282 IFKLDQSK 289 (376)
Q Consensus 282 V~~ld~~~ 289 (376)
|-|||+++
T Consensus 150 vskld~~t 157 (250)
T PF02191_consen 150 VSKLDPET 157 (250)
T ss_pred EEeeCccc
Confidence 99999875
No 69
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=71.23 E-value=93 Score=29.28 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=65.8
Q ss_pred EEEEEcCCCCc-eEEeecCCCCCCeEEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCcccceeEEEeecCCC-CCCeE
Q 017173 91 LYEFYDPAQRK-TYSLELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPT-SSSCV 168 (376)
Q Consensus 91 ~~~~~~~~~~~-~~~~~lp~~~~~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~-~~~~~ 168 (376)
....+|+.+++ ..+..++....... ...++.++.... ...++.+|+.||+.+.--..... .. ..|. .++.
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~~~~~p-~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~----~~-~~p~v~~~~- 147 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDERLSGGV-GADGGLVFVGTE-KGEVIALDAEDGKELWRAKLSSE----VL-SPPLVANGL- 147 (377)
T ss_pred eEEEEEccCCcEeeeecCCCCcccce-EEcCCEEEEEcC-CCEEEEEECCCCcEeeeeccCce----ee-cCCEEECCE-
Confidence 45566766554 33445543111111 234667666544 34788999999985431111110 00 1111 1122
Q ss_pred EEEEeccCCCeEEEEEEecC--CCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCCeEEEEeCCCCC
Q 017173 169 VFTVKHISPTVVAISTCHPG--ATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRD 236 (376)
Q Consensus 169 v~~i~~~~~~~~~~~~y~~~--~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~ 236 (376)
++.... .+ .+..++.. .-.|+.....+... ......+++.+|.+|+-...+.+.++|+.++.
T Consensus 148 v~v~~~-~g---~l~a~d~~tG~~~W~~~~~~~~~~--~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 148 VVVRTN-DG---RLTALDAATGERLWTYSRVTPALT--LRGSASPVIADGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred EEEECC-CC---eEEEEEcCCCceeeEEccCCCcee--ecCCCCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 222211 11 34455554 44687543222111 01234467778888887778899999997753
No 70
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=69.82 E-value=96 Score=28.87 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=85.8
Q ss_pred ecCC-eEEEEeCCCCeEEEEcCCCccee-----cCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCC
Q 017173 118 TKDS-WLLLYRPRTHRVFFFNPFTRDMI-----KLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATE 191 (376)
Q Consensus 118 s~~G-~ll~~~~~~~~~~l~NP~T~~~~-----~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~ 191 (376)
+.+| .|+..+-..++++++...-|... .+++- ..-..++| .|.. -+++++++-.. .+.+.-|+...++
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~F--Hpn~--k~aY~v~EL~s-tV~v~~y~~~~g~ 226 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHIVF--HPNG--KYAYLVNELNS-TVDVLEYNPAVGK 226 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcceEEE--cCCC--cEEEEEeccCC-EEEEEEEcCCCce
Confidence 4455 55555544456777655544321 12211 11112333 2322 13444454332 3455666666677
Q ss_pred eeeeccCCCCCccc---cceeee-EEeCCeE-EEEcc-CCeEEEEeCC--CCCceeeee-CCC-CCCcccccccccceeE
Q 017173 192 WVTDNYQNRLPFVS---SIWNKL-VFCNGIF-YCLSL-TGWLGVFDPV--KRDWGVLVV-PPP-KCPENFFAKNWWKGKF 261 (376)
Q Consensus 192 W~~~~~~~~~p~~~---~~~~~~-v~~~G~~-Y~l~~-~~~i~~~D~~--~~~~~~~~~-p~p-~~~~~~~~~~~~~~~~ 261 (376)
-+.+..-..+|... ....++ +..+|+| |+-.. ...|.+|-.+ ++..+.+.. +.- ..|.+ +
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~----------F 296 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD----------F 296 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc----------c
Confidence 77666544455321 111221 3348875 55444 3567777554 443333322 111 11222 4
Q ss_pred EEEECCcEEEEEEecCCCcEEEEEecCCccEEEeec
Q 017173 262 MVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 262 Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~ 297 (376)
-+..+|+++++....++.+.||+.|.++++-.++.+
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 466789999998888888999999999987766653
No 71
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.41 E-value=89 Score=30.87 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=26.0
Q ss_pred eeeeEEeCCeEEEEccCCeEEEEeCCCCC--cee
Q 017173 208 WNKLVFCNGIFYCLSLTGWLGVFDPVKRD--WGV 239 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~ 239 (376)
...+++.+|++|+.+.++.+.++|..+.+ |+.
T Consensus 54 ~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 34578889999999989999999998753 653
No 72
>PLN02772 guanylate kinase
Probab=64.57 E-value=47 Score=31.74 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred ceeeeEEeCCeEEEEcc--C-----CeEEEEeCCCCCceeee--eCCCCCCcccccccccceeEEEEECCcEEEEEEecC
Q 017173 207 IWNKLVFCNGIFYCLSL--T-----GWLGVFDPVKRDWGVLV--VPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS 277 (376)
Q Consensus 207 ~~~~~v~~~G~~Y~l~~--~-----~~i~~~D~~~~~~~~~~--~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~ 277 (376)
.....+.++.++|++.. + ..+.+||..+..|..-. -..| .|.. .+...+-.+++|+++..+..
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-~~r~-------GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-KPCK-------GYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-CCCC-------cceEEEECCceEEEEeCCCC
Confidence 35667888999999874 1 25899999999996422 1122 1221 12233445688999988776
Q ss_pred CCcEEEEEec
Q 017173 278 ENPIIFKLDQ 287 (376)
Q Consensus 278 ~~~~V~~ld~ 287 (376)
.+=++|-|..
T Consensus 98 ~~~~~w~l~~ 107 (398)
T PLN02772 98 PDDSIWFLEV 107 (398)
T ss_pred CccceEEEEc
Confidence 6666777754
No 73
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=62.76 E-value=29 Score=31.24 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=47.1
Q ss_pred EEEEEcCCCCceEEeecCCCC--CCeEEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCccc
Q 017173 91 LYEFYDPAQRKTYSLELPELY--GSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFEL 151 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~lp~~~--~~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~ 151 (376)
+..-|||+...|...+||... ...+..-.+|.+.+.+...+.+.-+||.|-+...||....
T Consensus 255 ~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 255 SLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred eeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 455689999999999999743 3344445688888877777789999999999888876643
No 74
>PF13919 ASXH: Asx homology domain
Probab=61.69 E-value=2.9 Score=33.51 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred cCCCCCCccHHHHHHHHhcCCcccc
Q 017173 32 ELHDWSELPAELLELIMCHLTLEDN 56 (376)
Q Consensus 32 ~~~~Ws~LP~dll~~Il~rLp~~~l 56 (376)
.+..|+.||+|--.+||..||..|.
T Consensus 40 N~~tw~~L~~eeq~eLl~LLP~~D~ 64 (138)
T PF13919_consen 40 NPETWSCLPEEEQQELLKLLPEVDR 64 (138)
T ss_pred CHHHHhcCCHHHHHHHHHhCCCCCc
Confidence 4678999999999999999997655
No 75
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=61.62 E-value=49 Score=30.46 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=39.3
Q ss_pred cceeeeEEeCCeEEEEcc-CCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEec
Q 017173 206 SIWNKLVFCNGIFYCLSL-TGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCC 276 (376)
Q Consensus 206 ~~~~~~v~~~G~~Y~l~~-~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~ 276 (376)
+....+-.++|++|+++. ++.+..+|++++.+..+. .-|..+.+.. ++ |.+++|....
T Consensus 203 smPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va-~vpG~~rGL~--------f~----G~llvVgmSk 261 (335)
T TIGR03032 203 SMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVA-FLPGFTRGLA--------FA----GDFAFVGLSK 261 (335)
T ss_pred cCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEE-ECCCCCcccc--------ee----CCEEEEEecc
Confidence 344667889999999986 789999999988776552 2333333210 22 8888887644
No 76
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=61.48 E-value=1.7e+02 Score=28.89 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=53.6
Q ss_pred EEEEEecCCCCeeeeccCC--CCCccccceeeeEEeCCeEEEEcc--------------------CCeEEEEeCCCCCce
Q 017173 181 AISTCHPGATEWVTDNYQN--RLPFVSSIWNKLVFCNGIFYCLSL--------------------TGWLGVFDPVKRDWG 238 (376)
Q Consensus 181 ~~~~y~~~~~~W~~~~~~~--~~p~~~~~~~~~v~~~G~~Y~l~~--------------------~~~i~~~D~~~~~~~ 238 (376)
.+...+..+-.|...+... .+| ...+..+..++++|+... +..+.++++++..|.
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlP---RSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLP---RSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred ceeEEecceeecccccccCCCCCC---cccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 3566677788998877642 355 567778888889887642 135889999999997
Q ss_pred eeeeCCCCCCcccccccccceeEEEEECCcEEEEEE
Q 017173 239 VLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYT 274 (376)
Q Consensus 239 ~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~ 274 (376)
.+..... ++....+...+...|+-+.+|++-..
T Consensus 308 tl~~d~~---ed~tiPR~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 308 TLLMDTL---EDNTIPRARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred eeeeccc---cccccccccccceeEEeccEEEEEec
Confidence 5532110 11000111123456777778877643
No 77
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.85 E-value=17 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.4
Q ss_pred CeEEEEccCCeEEEEeCCCCC
Q 017173 216 GIFYCLSLTGWLGVFDPVKRD 236 (376)
Q Consensus 216 G~~Y~l~~~~~i~~~D~~~~~ 236 (376)
|.+|+-+.++.|.++|.+++.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTS
T ss_pred CEEEEeCCCCEEEEEECCCCC
Confidence 577888888899999998875
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.75 E-value=1.4e+02 Score=27.51 Aligned_cols=133 Identities=10% Similarity=0.054 Sum_probs=64.6
Q ss_pred eEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCC-eeeeccCCCCCccccceee
Q 017173 132 RVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATE-WVTDNYQNRLPFVSSIWNK 210 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~-W~~~~~~~~~p~~~~~~~~ 210 (376)
.+.+||.++|+.--.-++......+- ..|....|+|+. . ..+.+|..++.+ -..+..+ .....
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~--w~~~Gd~F~v~~-~------~~i~i~q~d~A~v~~~i~~~-------~r~l~ 213 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVS--WSPQGDHFVVSG-R------NKIDIYQLDNASVFREIENP-------KRILC 213 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeE--EcCCCCEEEEEe-c------cEEEEEecccHhHhhhhhcc-------cccee
Confidence 45667777776432222221111233 334433344433 2 256788776542 2222221 11223
Q ss_pred eEEeCC-eEEEEccCCeEEEEeCCCCCc-eeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecC
Q 017173 211 LVFCNG-IFYCLSLTGWLGVFDPVKRDW-GVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQS 288 (376)
Q Consensus 211 ~v~~~G-~~Y~l~~~~~i~~~D~~~~~~-~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~ 288 (376)
+.+.++ .+.+-..++.|..+|-+.... .++.+ + ++..+..+.++-...-++|....++.+.||.+|.+
T Consensus 214 ~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----H------~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 214 ATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLA----H------ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecCCceEEEecCCceEEEeccCCCccceeeec----c------hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 344444 444444567788898886432 11111 0 11123344444444456666667788999999876
Q ss_pred Cc
Q 017173 289 KM 290 (376)
Q Consensus 289 ~~ 290 (376)
++
T Consensus 284 ~k 285 (362)
T KOG0294|consen 284 TK 285 (362)
T ss_pred cc
Confidence 43
No 79
>PRK04043 tolB translocation protein TolB; Provisional
Probab=59.28 E-value=1.7e+02 Score=28.21 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=96.2
Q ss_pred CeEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceee
Q 017173 131 HRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNK 210 (376)
Q Consensus 131 ~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~ 210 (376)
..+++.|+.||+...|-..+.......+ +| ++..+++..... +...+.+++..++.++.+...+.. ....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~--SP-DG~~la~~~~~~--g~~~Iy~~dl~~g~~~~LT~~~~~-----d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDV--SK-DGSKLLLTMAPK--GQPDIYLYDTNTKTLTQITNYPGI-----DVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEE--CC-CCCEEEEEEccC--CCcEEEEEECCCCcEEEcccCCCc-----cCcc
Confidence 3688888888877665432221112223 33 234455444322 234677888777777765432210 1111
Q ss_pred eEEeCC-eEEEEccC---CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecC------CCc
Q 017173 211 LVFCNG-IFYCLSLT---GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS------ENP 280 (376)
Q Consensus 211 ~v~~~G-~~Y~l~~~---~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~------~~~ 280 (376)
...-|| .+|+.... ..|+++|++++..+.+... .. .. .-+.-+|+.++...... ...
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-----g~-------~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-----GK-------NN-SSVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----CC-------cC-ceECCCCCEEEEEEcCCCcccCCCCc
Confidence 122255 57776542 3689999987665332110 00 00 12233455444333222 237
Q ss_pred EEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeec
Q 017173 281 IIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYP 348 (376)
Q Consensus 281 ~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~ 348 (376)
.||.+|.++..++.+..-+ .+.+.+.. | .|..|+|.........+..++++.+.-..
T Consensus 350 ~I~v~d~~~g~~~~LT~~~-------~~~~p~~S--P--DG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 350 NLYLISTNSDYIRRLTANG-------VNQFPRFS--S--DGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred EEEEEECCCCCeEECCCCC-------CcCCeEEC--C--CCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 8999999888887776532 11111110 1 36678888765344457788887765443
No 80
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=58.01 E-value=31 Score=31.41 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=49.3
Q ss_pred EEEECCcEEEEEEecC---------CCcEEEEEecCCccEEEeeccCCcEEEeeCCccc----ccCCCCc-cccCeEEEc
Q 017173 262 MVEHKGDILVIYTCCS---------ENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQ----SRADLPG-IMRNSVYFS 327 (376)
Q Consensus 262 Lv~~~G~LllV~~~~~---------~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~----~~~~~~g-~~~n~Iyf~ 327 (376)
-++..|+|+++..... ...++..+|..+.+=.+...++...+- ..|+ ......+ +....+|++
T Consensus 7 ~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 7 QIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred EEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcceEEEEe
Confidence 3556789999876431 135788889999888888888875542 2222 2222122 233569999
Q ss_pred ccccCCceEEEEecCCceeecC
Q 017173 328 KVRFFGKRCISYSLNDSRYYPR 349 (376)
Q Consensus 328 ~~~~~~~~~~vy~l~~~~~~~~ 349 (376)
|.. ...++|||+++++...+
T Consensus 84 D~~--~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 84 DSG--GPGLIVYDLATGKSWRV 103 (287)
T ss_dssp ETT--TCEEEEEETTTTEEEEE
T ss_pred CCC--cCcEEEEEccCCcEEEE
Confidence 873 55788999999865443
No 81
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=57.85 E-value=1.3e+02 Score=26.26 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=77.3
Q ss_pred cCCeEEEEeCCCCeEEEEcCCCccee--cCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeec
Q 017173 119 KDSWLLLYRPRTHRVFFFNPFTRDMI--KLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDN 196 (376)
Q Consensus 119 ~~G~ll~~~~~~~~~~l~NP~T~~~~--~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~ 196 (376)
.+|-|+..+-....++.++|.+++.. .+|. . ..+++.. + . ...+++. . . .+.+++..++.++.+.
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~-~G~~~~~-~-~-g~l~v~~-~-~----~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---P-NGMAFDR-P-D-GRLYVAD-S-G----GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS---E-EEEEEEC-T-T-SEEEEEE-T-T----CEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---C-ceEEEEc-c-C-CEEEEEE-c-C----ceEEEecCCCcEEEEe
Confidence 47788888766668999999999763 5555 1 1233331 1 1 2233332 2 1 2345588888887655
Q ss_pred cCCCCCccccceeeeEEe-CCeEEEEccC---------CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEEC
Q 017173 197 YQNRLPFVSSIWNKLVFC-NGIFYCLSLT---------GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHK 266 (376)
Q Consensus 197 ~~~~~p~~~~~~~~~v~~-~G~~Y~l~~~---------~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~ 266 (376)
....-........|+++- +|.+|+-+.. +.|+.+++. .....+.... ..|.+ ..+.-+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNG----------i~~s~d 144 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNG----------IAFSPD 144 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEE----------EEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccc----------eEECCc
Confidence 431000012345555544 7899986531 568999998 4433322111 11111 223345
Q ss_pred CcEEEEEEecCCCcEEEEEecCCccEE
Q 017173 267 GDILVIYTCCSENPIIFKLDQSKMAWE 293 (376)
Q Consensus 267 G~LllV~~~~~~~~~V~~ld~~~~~W~ 293 (376)
|+.+.|.......+..|.+|.....+.
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred chheeecccccceeEEEecccccccee
Confidence 776666554444444455554454343
No 82
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=57.81 E-value=1.6e+02 Score=27.46 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=62.3
Q ss_pred eeeeEEe--CCeEEEEccCCeEEEEeCCCCCceeeeeCCCCCCccccccccc-ceeEEEEE---CCcEEEEEEecC----
Q 017173 208 WNKLVFC--NGIFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWW-KGKFMVEH---KGDILVIYTCCS---- 277 (376)
Q Consensus 208 ~~~~v~~--~G~~Y~l~~~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~-~~~~Lv~~---~G~LllV~~~~~---- 277 (376)
+...++. +|.+||++.+|.+...|++.+.-.....-... ...-....|. .+-.+++. .|+|++......
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~-t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL-TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS--HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc-CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 4455554 36899999999999999998754322100000 0000001111 12244554 377876544222
Q ss_pred --CCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeec
Q 017173 278 --ENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYP 348 (376)
Q Consensus 278 --~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~ 348 (376)
..-.||.+|..+.+=...-.|+..+. |+.+.. . ..-.+|-.+. ..+.+.+||..+++...
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~~~~------Si~Vsq--d-~~P~L~~~~~--~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEHPID------SIAVSQ--D-DKPLLYALSA--GDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEEEES------EEEEES--S-SS-EEEEEET--TTTEEEEEETTT--EEE
T ss_pred cCCceEEEEEECCCCeEEEEEeCCCccc------eEEEcc--C-CCcEEEEEcC--CCCeEEEEeCcCCcEEe
Confidence 12589999998873332222322221 221110 1 2334665554 35567899999987553
No 83
>PF13013 F-box-like_2: F-box-like domain
Probab=56.90 E-value=3.4 Score=31.53 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHHhcCCcccceehhcccc
Q 017173 36 WSELPAELLELIMCHLTLEDNVHASVVCK 64 (376)
Q Consensus 36 Ws~LP~dll~~Il~rLp~~~l~r~r~VCk 64 (376)
-.+||+||++.|+....-+++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45899999999999999887766666666
No 84
>smart00612 Kelch Kelch domain.
Probab=56.58 E-value=16 Score=22.16 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=17.4
Q ss_pred cEEEEEecCCccEEEeeccCC
Q 017173 280 PIIFKLDQSKMAWEEMKTLDG 300 (376)
Q Consensus 280 ~~V~~ld~~~~~W~~v~~lg~ 300 (376)
-.|+.+|.++.+|+++.+|+.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC
Confidence 357788999999999998864
No 85
>smart00284 OLF Olfactomedin-like domains.
Probab=56.38 E-value=1.5e+02 Score=26.52 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=49.8
Q ss_pred eeeeEEeCCeEEEEcc-CCeEEEEeCCCCCceeee-eCCCCCC--cccccccccceeEEEEECCcEEEEEEecC--CCcE
Q 017173 208 WNKLVFCNGIFYCLSL-TGWLGVFDPVKRDWGVLV-VPPPKCP--ENFFAKNWWKGKFMVEHKGDILVIYTCCS--ENPI 281 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~-~~~i~~~D~~~~~~~~~~-~p~p~~~--~~~~~~~~~~~~~Lv~~~G~LllV~~~~~--~~~~ 281 (376)
-..-|++||.+|.-.. +..|..||+.++.-.... +|..... ..+... .....-|...+..|.+|-.... +.+.
T Consensus 76 GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~-~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWG-GFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccC-CCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 3456899999998543 567999999998653222 2221100 011110 1123456666677888876543 5688
Q ss_pred EEEEecCCc
Q 017173 282 IFKLDQSKM 290 (376)
Q Consensus 282 V~~ld~~~~ 290 (376)
|-|||+.+-
T Consensus 155 vSkLnp~tL 163 (255)
T smart00284 155 ISKLNPATL 163 (255)
T ss_pred EEeeCcccc
Confidence 999998753
No 86
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=55.89 E-value=1.6e+02 Score=26.75 Aligned_cols=108 Identities=11% Similarity=0.247 Sum_probs=61.1
Q ss_pred EEEEEEecCCCCeeeeccCCCCCccccceeeeEEe-CCeEEEEc-------cCCeEEEEeCCCCCceeeeeCC-CCCCcc
Q 017173 180 VAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFC-NGIFYCLS-------LTGWLGVFDPVKRDWGVLVVPP-PKCPEN 250 (376)
Q Consensus 180 ~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~-~G~~Y~l~-------~~~~i~~~D~~~~~~~~~~~p~-p~~~~~ 250 (376)
..+.+|+..+.+|...... +. -...++.+. +.++|+.. ....+..||+++..|..+.... -..|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~--i~---G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG--IS---GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCC--ce---EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 3678999999999987654 21 234555555 44566543 2346899999999997653211 001111
Q ss_pred cccccccceeEEEEEC-CcEEEEEEecCCCcEEEEEecCCccEEEeec--cCC
Q 017173 251 FFAKNWWKGKFMVEHK-GDILVIYTCCSENPIIFKLDQSKMAWEEMKT--LDG 300 (376)
Q Consensus 251 ~~~~~~~~~~~Lv~~~-G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~--lg~ 300 (376)
. ........+ ..+++.+......-.+.+. +..+|..+.. +++
T Consensus 91 v------~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~~~~~~ 135 (281)
T PF12768_consen 91 V------TALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGSDILGS 135 (281)
T ss_pred E------EEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccccccCC
Confidence 0 011112223 4566666654444555555 5667988877 454
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=55.11 E-value=2e+02 Score=27.68 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCC-CceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccEEEeeccCCcE
Q 017173 224 TGWLGVFDPVKR-DWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLT 302 (376)
Q Consensus 224 ~~~i~~~D~~~~-~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~ 302 (376)
++.+..||+... .+..+..+. .+. ...+-.+-.|..+.+. ..++.||..+..++.|.++..+.+..
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~-----~~~-----v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDE-----KKE-----VNSLSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred CCeEEEEEehhhcccceeeccc-----ccc-----ceeEEEcCCCCeEEee---cceeEEEEEecccccceeeehhhhcc
Confidence 566999999864 344443321 100 1123334457777666 57789999999999999999887654
No 88
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=54.24 E-value=1.9e+02 Score=27.13 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=17.7
Q ss_pred cCCeEEEEeCCCCeEEEEcCCCcce
Q 017173 119 KDSWLLLYRPRTHRVFFFNPFTRDM 143 (376)
Q Consensus 119 ~~G~ll~~~~~~~~~~l~NP~T~~~ 143 (376)
..|-.++.......+.+|||.||+.
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCce
Confidence 3565555544455899999999974
No 89
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.98 E-value=2.4e+02 Score=27.92 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=61.2
Q ss_pred CeeeeccCCCCCccccceeeeEEe-----CCeEEEEcc-----CCeEEEEeCCCCCceeeeeC-CCCCCcccccccccce
Q 017173 191 EWVTDNYQNRLPFVSSIWNKLVFC-----NGIFYCLSL-----TGWLGVFDPVKRDWGVLVVP-PPKCPENFFAKNWWKG 259 (376)
Q Consensus 191 ~W~~~~~~~~~p~~~~~~~~~v~~-----~G~~Y~l~~-----~~~i~~~D~~~~~~~~~~~p-~p~~~~~~~~~~~~~~ 259 (376)
.|........+|.-......++|+ ..++|+... -+.++.+|+++..|...... .+..|...+... ..+
T Consensus 186 ~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~-~IG 264 (830)
T KOG4152|consen 186 AWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSAT-TIG 264 (830)
T ss_pred EEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccce-eec
Confidence 687544322233212233444554 235776654 36799999999999754311 111122211000 011
Q ss_pred eEEEEECCcEEEEEEecC-----------CCcEEEEEecCCccEEEe--eccCCcEEEeeCCcccccCCCCccccCeEEE
Q 017173 260 KFMVEHKGDILVIYTCCS-----------ENPIIFKLDQSKMAWEEM--KTLDGLTLFASFLSSQSRADLPGIMRNSVYF 326 (376)
Q Consensus 260 ~~Lv~~~G~LllV~~~~~-----------~~~~V~~ld~~~~~W~~v--~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf 326 (376)
..+...+|-+=++..... ..+..| |.++++|+.+ +++.|..+=-++-.-+. -.-++++||
T Consensus 265 nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~cl--Nldt~~W~tl~~d~~ed~tiPR~RAGHCA-----vAigtRlYi 337 (830)
T KOG4152|consen 265 NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACL--NLDTMAWETLLMDTLEDNTIPRARAGHCA-----VAIGTRLYI 337 (830)
T ss_pred ceeEEecceeeeeccccccccccceeeeccceeee--eecchheeeeeecccccccccccccccee-----EEeccEEEE
Confidence 122234555444433221 124444 5567778866 45555553222211111 115778888
Q ss_pred cccc
Q 017173 327 SKVR 330 (376)
Q Consensus 327 ~~~~ 330 (376)
.+.+
T Consensus 338 WSGR 341 (830)
T KOG4152|consen 338 WSGR 341 (830)
T ss_pred Eecc
Confidence 8754
No 90
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=51.65 E-value=7.7 Score=28.85 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCCCCccHHHHHHHHhcCCcccce
Q 017173 34 HDWSELPAELLELIMCHLTLEDNV 57 (376)
Q Consensus 34 ~~Ws~LP~dll~~Il~rLp~~~l~ 57 (376)
..|..||.|+-..||..|+-.|+.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 579999999999999999987764
No 91
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.67 E-value=1.7e+02 Score=30.27 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCceEEeecCCCCCCeEEE-ecCCeEEEEeCCCCeEEEEcCCCccee
Q 017173 90 NLYEFYDPAQRKTYSLELPELYGSRVCY-TKDSWLLLYRPRTHRVFFFNPFTRDMI 144 (376)
Q Consensus 90 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~-s~~G~ll~~~~~~~~~~l~NP~T~~~~ 144 (376)
+....||+..++.+.+++..-.....++ |..|.++++.+..+.+.++|-..+..+
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vl 90 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVL 90 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceee
Confidence 5667788888888877766422222233 678888877776667888888877655
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=48.77 E-value=2.2e+02 Score=26.14 Aligned_cols=148 Identities=9% Similarity=0.026 Sum_probs=75.9
Q ss_pred eEEEEcCCCcce---ecCCCcccceeEEEeecCCC---CCCeEEEEEeccCCC----e-EEEEEEecCCC-----Ceeee
Q 017173 132 RVFFFNPFTRDM---IKLPRFELTYQIVAFSCAPT---SSSCVVFTVKHISPT----V-VAISTCHPGAT-----EWVTD 195 (376)
Q Consensus 132 ~~~l~NP~T~~~---~~LP~~~~~~~~~~l~~~p~---~~~~~v~~i~~~~~~----~-~~~~~y~~~~~-----~W~~~ 195 (376)
.+.|+||.|.+. +.|++.+.......+..... ...|.|++.....++ . ..+.+|+..+. +.+.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578999988764 45666655443333332222 246777776533211 1 45667776663 34433
Q ss_pred ccCCCCCccccceeeeEEeCCeEEEEccCCeEEEEeCCCCC-ceeee-eCCCCCCcccccccccceeEEEEECCcEEEEE
Q 017173 196 NYQNRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRD-WGVLV-VPPPKCPENFFAKNWWKGKFMVEHKGDILVIY 273 (376)
Q Consensus 196 ~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~-~~~~~-~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~ 273 (376)
.... ++ .....+..++|. .+++....|.+|++.... +.... ...+. .-..+... |..++|+
T Consensus 83 ~~~~-~~---g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~-----------~i~sl~~~-~~~I~vg 145 (321)
T PF03178_consen 83 HSTE-VK---GPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPF-----------YITSLSVF-KNYILVG 145 (321)
T ss_dssp EEEE-ES---S-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSS-----------SEEEEEEE-TTEEEEE
T ss_pred EEEe-ec---CcceEhhhhCCE-EEEeecCEEEEEEccCcccchhhheecceE-----------EEEEEecc-ccEEEEE
Confidence 2211 11 345667777888 555556789999998776 42211 11110 11223333 3444443
Q ss_pred EecCCCcEEEEEecCCccEEEeec
Q 017173 274 TCCSENPIIFKLDQSKMAWEEMKT 297 (376)
Q Consensus 274 ~~~~~~~~V~~ld~~~~~W~~v~~ 297 (376)
. ....+.+++++.+..+...+..
T Consensus 146 D-~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 146 D-AMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp E-SSSSEEEEEEETTTE-EEEEEE
T ss_pred E-cccCEEEEEEEccCCEEEEEEe
Confidence 3 3456677777765555555543
No 93
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=44.40 E-value=2.1e+02 Score=24.84 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=84.2
Q ss_pred EEEEEcCCCCceEEeecCCCCCCeEEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCc---c---cceeEEEeecCCCC
Q 017173 91 LYEFYDPAQRKTYSLELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRF---E---LTYQIVAFSCAPTS 164 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~lp~~~~~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~---~---~~~~~~~l~~~p~~ 164 (376)
...-+++.++....+.+|. +....+...+|.|++.... .+.++||-|++...+-.. . .....+++..+
T Consensus 23 ~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--- 96 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--- 96 (246)
T ss_dssp EEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT---
T ss_pred EEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC---
Confidence 3444566666555555554 2112222357888877664 667779999976544222 1 12233444332
Q ss_pred CCeEEEEEeccC-CCe--EEEEEEecCCCCeeeeccCCCCCccccceeeeEEe-CC-eEEEEcc-CCeEEEEeCCCCCc-
Q 017173 165 SSCVVFTVKHIS-PTV--VAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFC-NG-IFYCLSL-TGWLGVFDPVKRDW- 237 (376)
Q Consensus 165 ~~~~v~~i~~~~-~~~--~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~-~G-~~Y~l~~-~~~i~~~D~~~~~~- 237 (376)
+...+--..... ... -.+..+++. ++.+.+..... ....+++- +| .+|+... .+.|..||++....
T Consensus 97 G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 97 GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccceeEEEeccccccc
Confidence 222221111111 111 345556655 55554433211 12233332 45 5786654 67899999975432
Q ss_pred -ee--eeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccE
Q 017173 238 -GV--LVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAW 292 (376)
Q Consensus 238 -~~--~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W 292 (376)
.. .-...+... . .-.-..+..+|.|++... ..-.|+++|.+...-
T Consensus 170 ~~~~~~~~~~~~~~-g------~pDG~~vD~~G~l~va~~---~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 170 LSNRRVFIDFPGGP-G------YPDGLAVDSDGNLWVADW---GGGRIVVFDPDGKLL 217 (246)
T ss_dssp EEEEEEEEE-SSSS-C------EEEEEEEBTTS-EEEEEE---TTTEEEEEETTSCEE
T ss_pred eeeeeeEEEcCCCC-c------CCCcceEcCCCCEEEEEc---CCCEEEEECCCccEE
Confidence 21 111111111 0 011234666788877655 334677778775433
No 94
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=44.01 E-value=37 Score=33.18 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=63.9
Q ss_pred EEEEecCCCCeeeeccCCCCCccccceeeeEEeCC--eEEEEcc------------CCeEEEEeCCCCCceeeeeCCC--
Q 017173 182 ISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNG--IFYCLSL------------TGWLGVFDPVKRDWGVLVVPPP-- 245 (376)
Q Consensus 182 ~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G--~~Y~l~~------------~~~i~~~D~~~~~~~~~~~p~p-- 245 (376)
+..|.-+.+.|+.+.-....|- ......+|..-. ++|.++. ...+++||.++..|..+.....
T Consensus 290 FW~Y~v~e~~W~~iN~~t~~PG-~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~d 368 (723)
T KOG2437|consen 290 FWAYSVKENQWTCINRDTEGPG-ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAAD 368 (723)
T ss_pred HHhhcCCcceeEEeecCCCCCc-chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccccc
Confidence 4567777788998876544442 234555666655 7887753 1358999999999987754332
Q ss_pred CCCcccccccccceeEEEEEC-CcEEEEEEecC--C--C-cEEEEEecCCccEEEe
Q 017173 246 KCPENFFAKNWWKGKFMVEHK-GDILVIYTCCS--E--N-PIIFKLDQSKMAWEEM 295 (376)
Q Consensus 246 ~~~~~~~~~~~~~~~~Lv~~~-G~LllV~~~~~--~--~-~~V~~ld~~~~~W~~v 295 (376)
.+|... ..+...|..+ |-+++.+.+.. + . -..|..|.....|..+
T Consensus 369 GGP~~v-----fDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 369 GGPKLV-----FDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred CCccee-----ecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 233221 1122334333 45666655432 1 1 2578888888888754
No 95
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=41.81 E-value=3e+02 Score=25.72 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=40.5
Q ss_pred CC--eEEEEccCCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEE----CCcEEEEEEecCCCcEEEEEe
Q 017173 215 NG--IFYCLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEH----KGDILVIYTCCSENPIIFKLD 286 (376)
Q Consensus 215 ~G--~~Y~l~~~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~----~G~LllV~~~~~~~~~V~~ld 286 (376)
+| ++|+++..+....|++..+. .+...+.|.-.....-+. ....|+|.+ ++.++.+.....+...+|.++
T Consensus 222 ~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~-~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKE-DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred CCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhh-hhhhheeecccCCCcceEEEeccccCceeEEEee
Confidence 55 79999999999999998765 233333332111111011 123467764 255666666546677777775
No 96
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=41.11 E-value=2.6e+02 Score=24.94 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=70.0
Q ss_pred CCceEEEEeecCcEEEEEcCCCCceEE-eecCCCCCCeEEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCcccceeEE
Q 017173 78 QSPWLMYFPKFGNLYEFYDPAQRKTYS-LELPELYGSRVCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQIV 156 (376)
Q Consensus 78 ~~P~l~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~ 156 (376)
..|-++...+......|.-..+++..+ ++.|...-.+..-++++-.+.+... ..+.++|.-|+... |-.
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~------- 77 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVA------- 77 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--cee-------
Confidence 345555433334567777777777544 5555544444444554444433332 36778877766533 111
Q ss_pred EeecCCCCCCeEEEEEeccCCCeEEEEEEecCCC----Ceeeecc--CCCCCccccceeeeEEe--CCeEEEEccCCeEE
Q 017173 157 AFSCAPTSSSCVVFTVKHISPTVVAISTCHPGAT----EWVTDNY--QNRLPFVSSIWNKLVFC--NGIFYCLSLTGWLG 228 (376)
Q Consensus 157 ~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~----~W~~~~~--~~~~p~~~~~~~~~v~~--~G~~Y~l~~~~~i~ 228 (376)
.|. .....-.++++... .-.+|..+++ .|..-.. +-.+.. .+....++.+ ++-+..-+..|.|.
T Consensus 78 t~e--~h~kNVtaVgF~~d-----grWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 78 TFE--GHTKNVTAVGFQCD-----GRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred EEe--ccCCceEEEEEeec-----CeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEE
Confidence 111 11111112221110 1122332221 2432211 101110 1345555555 45566667789999
Q ss_pred EEeCCCCCceeeeeCC
Q 017173 229 VFDPVKRDWGVLVVPP 244 (376)
Q Consensus 229 ~~D~~~~~~~~~~~p~ 244 (376)
+||+.++......+|.
T Consensus 150 vWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPE 165 (311)
T ss_pred EEEccCCccccccCCC
Confidence 9999998765443443
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.55 E-value=3.5e+02 Score=26.17 Aligned_cols=90 Identities=9% Similarity=0.151 Sum_probs=49.9
Q ss_pred EEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCccc--ceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCe
Q 017173 115 VCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFEL--TYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEW 192 (376)
Q Consensus 115 ~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~--~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W 192 (376)
+-.+-+|+-+....+...+.+||.---. .++.... .+....++.|.+. .|.+.+ +.-+.+++|...+.+|
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SG-t~L~~~-----g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSG-TYLGIA-----GSDLQVYICKKKTKSW 466 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEcCCC-CeEEee-----cceeEEEEEecccccc
Confidence 3446677654444333359999975433 2222221 2234556666543 554444 2246788899999999
Q ss_pred eeeccCCCCCccccceeeeEEeCC
Q 017173 193 VTDNYQNRLPFVSSIWNKLVFCNG 216 (376)
Q Consensus 193 ~~~~~~~~~p~~~~~~~~~v~~~G 216 (376)
+.+...... +...+.|-++.
T Consensus 467 ~~~~~~~~~----sg~st~v~Fg~ 486 (506)
T KOG0289|consen 467 TEIKELADH----SGLSTGVRFGE 486 (506)
T ss_pred eeeehhhhc----ccccceeeecc
Confidence 987753211 23455565654
No 98
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.48 E-value=4.7e+02 Score=27.67 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=25.7
Q ss_pred eeeeEEeCCeEEEEccCCeEEEEeCCCCC--ce
Q 017173 208 WNKLVFCNGIFYCLSLTGWLGVFDPVKRD--WG 238 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~ 238 (376)
....++.+|++|+.+.++.+.++|..+++ |+
T Consensus 187 e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~ 219 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNKVIALDAATGKEKWK 219 (764)
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCCcEEEE
Confidence 34578889999999999999999998764 65
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=40.06 E-value=3.5e+02 Score=26.07 Aligned_cols=200 Identities=10% Similarity=-0.020 Sum_probs=94.4
Q ss_pred ecCC-eEEEEeC--CCCeEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeee
Q 017173 118 TKDS-WLLLYRP--RTHRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVT 194 (376)
Q Consensus 118 s~~G-~ll~~~~--~~~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~ 194 (376)
+.+| .|+.... ....++++|+-||+...+...+.......+ +| +++.+++..... +...+..++..++.-+.
T Consensus 210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~--SP-DG~~la~~~~~~--g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 210 SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF--SP-DGRKVVMSLSQG--GNTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE--CC-CCCEEEEEEecC--CCceEEEEECCCCceEE
Confidence 4455 4444332 124799999999987666443321112223 23 234444443321 12356666766665444
Q ss_pred eccCCCCCccccceeeeE-EeCCe-EEEEcc-C--CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcE
Q 017173 195 DNYQNRLPFVSSIWNKLV-FCNGI-FYCLSL-T--GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDI 269 (376)
Q Consensus 195 ~~~~~~~p~~~~~~~~~v-~~~G~-~Y~l~~-~--~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~L 269 (376)
+...... ...+. .-+|+ +++... . ..|..+|++++..+.+... ...+ .. .-..-+|+.
T Consensus 285 Lt~~~~~------~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~----~~~~------~~-~~~SpdG~~ 347 (435)
T PRK05137 285 LTDSPAI------DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG----GGRY------ST-PVWSPRGDL 347 (435)
T ss_pred ccCCCCc------cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC----CCcc------cC-eEECCCCCE
Confidence 3321111 11111 12453 444332 2 3688888877654433211 1100 00 112235665
Q ss_pred EEEEEecCCCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCC---ceEEEEecCCcee
Q 017173 270 LVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFG---KRCISYSLNDSRY 346 (376)
Q Consensus 270 llV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~---~~~~vy~l~~~~~ 346 (376)
+++.....+...|+.+|.++.....+.. +.. ..+.+ . .-.++.|||....... ..+++++++.+..
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~~------~~~p~---~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGERILTS-GFL------VEGPT---W-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCceEeccC-CCC------CCCCe---E-CCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 5554434455778888876554433322 110 01111 0 1146788887653222 3678899988766
Q ss_pred ecCC
Q 017173 347 YPRK 350 (376)
Q Consensus 347 ~~~~ 350 (376)
..+.
T Consensus 417 ~~l~ 420 (435)
T PRK05137 417 REVP 420 (435)
T ss_pred EEcc
Confidence 6554
No 100
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.08 E-value=69 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC-----------CeEEEEeCCCCCceeeeeCCCC
Q 017173 189 ATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT-----------GWLGVFDPVKRDWGVLVVPPPK 246 (376)
Q Consensus 189 ~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~-----------~~i~~~D~~~~~~~~~~~p~p~ 246 (376)
+..|+.+..-+.-+ +.-.-.++++|++|+.... ..++.||+..++|..++.-.|.
T Consensus 69 ~k~W~~~a~FpG~~---rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 69 GKGWTKIADFPGGA---RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred CCCceEcccCCCcc---cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccc
Confidence 56899888644322 3444568999999997542 2478899999999876654443
No 101
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.86 E-value=4.2e+02 Score=26.05 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=78.7
Q ss_pred EEEEEcCCCCceEEee--cCCCCC---C------e----EEEecCCeEEEEeCCCCeEEEEcCCCcceecCCCcccceeE
Q 017173 91 LYEFYDPAQRKTYSLE--LPELYG---S------R----VCYTKDSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQI 155 (376)
Q Consensus 91 ~~~~~~~~~~~~~~~~--lp~~~~---~------~----~~~s~~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~ 155 (376)
...+|||...+.-.+. +|-... . . +.-+.+..+.+.... ..++.||--+..++++..... ..
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--kaFi~~~~~~~~iqv~~~~~V-rY 364 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--KAFIMRPWDGYSIQVGKKGGV-RY 364 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--cEEEECCCCCeeEEcCCCCce-EE
Confidence 4567899988776554 442210 0 0 111344555555433 689999999999998876532 22
Q ss_pred EEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEcc-CCeEEEEeCCC
Q 017173 156 VAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSL-TGWLGVFDPVK 234 (376)
Q Consensus 156 ~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~-~~~i~~~D~~~ 234 (376)
..+..++. -.|++.+. ++ .+.+|+.+++.=..++-+ +. .-..-.+--+|+.-+++. ..+|+++|+++
T Consensus 365 ~r~~~~~e---~~vigt~d--gD--~l~iyd~~~~e~kr~e~~--lg---~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 365 RRIQVDPE---GDVIGTND--GD--KLGIYDKDGGEVKRIEKD--LG---NIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred EEEccCCc---ceEEeccC--Cc--eEEEEecCCceEEEeeCC--cc---ceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 33334432 23444332 22 577898888776666543 22 122223556888666655 46799999988
Q ss_pred CCceee
Q 017173 235 RDWGVL 240 (376)
Q Consensus 235 ~~~~~~ 240 (376)
+..+.+
T Consensus 433 gnv~~i 438 (668)
T COG4946 433 GNVRLI 438 (668)
T ss_pred CCeeEe
Confidence 765543
No 102
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.20 E-value=3.3e+02 Score=24.60 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=41.3
Q ss_pred eEEEEcCCCcceecCCCccccee-EEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceee
Q 017173 132 RVFFFNPFTRDMIKLPRFELTYQ-IVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNK 210 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~~~~-~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~ 210 (376)
.+.-+||.||..+.=--+...+- .+.+ .++++|++-.. ++ +-+.-.+.|+..|....... .. ....
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~--g~-lYfl~~~tGs~~w~f~~~~~-vk----~~a~ 100 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYS--GG-LYFLCVKTGSQIWNFVILET-VK----VRAQ 100 (354)
T ss_pred eEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEcc--Cc-EEEEEecchhheeeeeehhh-hc----cceE
Confidence 45567888887543222222221 1111 24666666432 11 22222344566887554321 10 0111
Q ss_pred eEEeCCeEEEEccCCeEEEEeCCC
Q 017173 211 LVFCNGIFYCLSLTGWLGVFDPVK 234 (376)
Q Consensus 211 ~v~~~G~~Y~l~~~~~i~~~D~~~ 234 (376)
+.+-.|.+|+-+.++..+++|+.+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccc
Confidence 223345566666666666666654
No 103
>PF15150 PMAIP1: Phorbol-12-myristate-13-acetate-induced; PDB: 2ROD_B 2JM6_A 2NLA_B 3MQP_B.
Probab=35.69 E-value=8.8 Score=24.24 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhcccc
Q 017173 1 MAGKKRRKLKLLAETET 17 (376)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (376)
|-|||-||+-+-+++.+
T Consensus 1 MPGkkaRk~aq~~Ptr~ 17 (54)
T PF15150_consen 1 MPGKKARKNAQPSPTRA 17 (54)
T ss_dssp -----------------
T ss_pred CCcccccccCCCCCCCC
Confidence 77999998877555544
No 104
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=35.40 E-value=1.7e+02 Score=27.06 Aligned_cols=64 Identities=19% Similarity=0.412 Sum_probs=38.1
Q ss_pred EEEEeCC-CCCceeeeeCCCCCCcccccccccceeEEEEE-CCcEEEEEEecCCCcEEEEEecCCccEEE-eeccC
Q 017173 227 LGVFDPV-KRDWGVLVVPPPKCPENFFAKNWWKGKFMVEH-KGDILVIYTCCSENPIIFKLDQSKMAWEE-MKTLD 299 (376)
Q Consensus 227 i~~~D~~-~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~-~G~LllV~~~~~~~~~V~~ld~~~~~W~~-v~~lg 299 (376)
+..|--+ ...|..-..-. +.. ...+.++|- +|+|+|+..|....-.||+=.....+|.+ +..|.
T Consensus 151 lIiYS~d~g~~W~lskg~s---~~g------C~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 151 LIIYSTDDGKTWKLSKGMS---PAG------CSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EEEEESSTTSS-EE-S-------TT-------EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTT
T ss_pred EEEEECCCccceEeccccC---CCC------cceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccc
Confidence 5566555 45686532111 111 246789998 79999999999888899998778888997 44554
No 105
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=35.05 E-value=2.1e+02 Score=22.10 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=37.9
Q ss_pred EEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccC--C-----eEEEE-eCCCCCceee
Q 017173 180 VAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLT--G-----WLGVF-DPVKRDWGVL 240 (376)
Q Consensus 180 ~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~--~-----~i~~~-D~~~~~~~~~ 240 (376)
..+..+|..+.+|+.+..+. .+.........+-++|++-++... + .|.++ |...+.|...
T Consensus 20 ~~IvsFDv~~E~f~~i~~P~-~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIKLPE-DPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred cEEEEEEcCCceEEEEEeee-eeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEE
Confidence 45667788999999888751 111123456678889998876542 1 34555 4556778643
No 106
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.48 E-value=3e+02 Score=23.86 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=45.2
Q ss_pred eEEeCCeEEEEccCCeEEEEeCCCCCce--eeeeCCCCCCcccc--cccccceeEEEEECCcEEEEEEecCCCcEEEEEe
Q 017173 211 LVFCNGIFYCLSLTGWLGVFDPVKRDWG--VLVVPPPKCPENFF--AKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLD 286 (376)
Q Consensus 211 ~v~~~G~~Y~l~~~~~i~~~D~~~~~~~--~~~~p~p~~~~~~~--~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld 286 (376)
....+.-+.+++..|.+.+||+.+..-. .+.+.+-..+.... .........-+..+|..+++... + +.|..|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn--g--~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN--G--DSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC--C--CEEEec
Confidence 3344556888999999999999976421 11110000000000 00000112334456877655432 2 457778
Q ss_pred cCCccEEEeecc
Q 017173 287 QSKMAWEEMKTL 298 (376)
Q Consensus 287 ~~~~~W~~v~~l 298 (376)
.+-+.|.+|.+=
T Consensus 94 ~~L~~W~~vsd~ 105 (219)
T PF07569_consen 94 PDLGCWIRVSDS 105 (219)
T ss_pred cccceeEEeccc
Confidence 888899998754
No 107
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=34.00 E-value=5.3e+02 Score=26.40 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCeEE-EEccCCeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecC---CCcEEE
Q 017173 215 NGIFY-CLSLTGWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCS---ENPIIF 283 (376)
Q Consensus 215 ~G~~Y-~l~~~~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~---~~~~V~ 283 (376)
+|+.- -++.+|.|.+|++....-.+...+-|... ...+.+-+|+|+.++|..+.. ..+.+|
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt--------RgARi~wacdgr~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT--------RGARILWACDGRIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCccccCCCCccC--------cceeEEEEecCcEEEEecccccchhhhhhh
Confidence 55443 36678889999988754322222222211 134577889999988876543 234555
No 108
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=34.00 E-value=1.1e+02 Score=18.70 Aligned_cols=28 Identities=11% Similarity=0.021 Sum_probs=22.0
Q ss_pred eeeeEEeCCeEEEEccCCeEEEEeCCCC
Q 017173 208 WNKLVFCNGIFYCLSLTGWLGVFDPVKR 235 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~~~~i~~~D~~~~ 235 (376)
..++.+.++-+|+-...+.|.++|.+.-
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvDISnP 31 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVDISNP 31 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEECCCC
Confidence 3466677788998888888999999863
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.56 E-value=4.4e+02 Score=25.35 Aligned_cols=162 Identities=13% Similarity=0.127 Sum_probs=80.9
Q ss_pred eEEEEcCCCcceecCCCccc--ceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCC---CCeeeeccCCCCCcccc
Q 017173 132 RVFFFNPFTRDMIKLPRFEL--TYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGA---TEWVTDNYQNRLPFVSS 206 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~--~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~---~~W~~~~~~~~~p~~~~ 206 (376)
.+.++|-.||..+.+=+-.. ....++.-.|. .. .|.+ .++ ..+..++... +.|..+..+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~-~V~G----s~d-r~i~~wdlDgn~~~~W~gvr~~-------- 355 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG--FR-FVTG----SPD-RTIIMWDLDGNILGNWEGVRDP-------- 355 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCC--ce-eEec----CCC-CcEEEecCCcchhhcccccccc--------
Confidence 57889999998776533222 22234443321 11 1211 111 2344555443 478876642
Q ss_pred ceeeeE-EeCC-eEEEEccCCeEEEEeCCCCCce-eeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEE
Q 017173 207 IWNKLV-FCNG-IFYCLSLTGWLGVFDPVKRDWG-VLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIF 283 (376)
Q Consensus 207 ~~~~~v-~~~G-~~Y~l~~~~~i~~~D~~~~~~~-~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~ 283 (376)
...|++ -.+| .+|.++.+..|..|+.++..=+ .+....|. ...-+.-+|++.+|.. ....+..|
T Consensus 356 ~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i------------ts~~iS~d~k~~LvnL-~~qei~LW 422 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI------------TSFSISKDGKLALVNL-QDQEIHLW 422 (519)
T ss_pred eeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce------------eEEEEcCCCcEEEEEc-ccCeeEEe
Confidence 133433 3456 4788888888999988765322 23222221 1122334688888876 23445666
Q ss_pred EEecCCccEEEeecc-CC-c------EEEeeCCcccccCCCCccccCeEEEccc
Q 017173 284 KLDQSKMAWEEMKTL-DG-L------TLFASFLSSQSRADLPGIMRNSVYFSKV 329 (376)
Q Consensus 284 ~ld~~~~~W~~v~~l-g~-~------~lFlg~~~s~~~~~~~g~~~n~Iyf~~~ 329 (376)
|.+ +|+.+..- |. + ..|-|.+..+.+. |-+...||+.+.
T Consensus 423 --Dl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS---GSED~kvyIWhr 469 (519)
T KOG0293|consen 423 --DLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS---GSEDSKVYIWHR 469 (519)
T ss_pred --ecc--hhhHHHHhhcccccceEEEeccCCCCcceEEe---cCCCceEEEEEc
Confidence 444 34444332 21 1 2232333333332 435566777764
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=33.36 E-value=3.3e+02 Score=23.81 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCceEE-eecCCCCCCeEEEecCC-eEEEEeCCCCeEEEEcCCCccee-cCCCcccceeEEEeecCCCCCC
Q 017173 90 NLYEFYDPAQRKTYS-LELPELYGSRVCYTKDS-WLLLYRPRTHRVFFFNPFTRDMI-KLPRFELTYQIVAFSCAPTSSS 166 (376)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~lp~~~~~~~~~s~~G-~ll~~~~~~~~~~l~NP~T~~~~-~LP~~~~~~~~~~l~~~p~~~~ 166 (376)
+...++|....+... ++... ....+..+.+| .+++.......+.++|+-+++.+ .++.. .....++++ | ++.
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~--~-dg~ 127 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS--P-DGK 127 (300)
T ss_pred CeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC--C-CCC
Confidence 456677877665432 22211 11223334444 45555444457999999887643 23211 111223332 2 223
Q ss_pred eEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEE-eCCe-EEEEc-cCCeEEEEeCCCCCc-eeeee
Q 017173 167 CVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVF-CNGI-FYCLS-LTGWLGVFDPVKRDW-GVLVV 242 (376)
Q Consensus 167 ~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~-~~G~-~Y~l~-~~~~i~~~D~~~~~~-~~~~~ 242 (376)
+.++... .. ..+.+++..+..-......... ...+.+ -+|. +|+.. ..+.|..||+.+... ..+..
T Consensus 128 ~l~~~~~--~~--~~~~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 128 IVVNTSE--TT--NMAHFIDTKTYEIVDNVLVDQR------PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred EEEEEec--CC--CeEEEEeCCCCeEEEEEEcCCC------ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 3333221 11 1334455544321110000111 111222 2555 44443 367899999987542 22221
Q ss_pred CCCC-CCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccEEEeecc--CCcEEEeeCCcccccCCCCcc
Q 017173 243 PPPK-CPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAWEEMKTL--DGLTLFASFLSSQSRADLPGI 319 (376)
Q Consensus 243 p~p~-~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~l--g~~~lFlg~~~s~~~~~~~g~ 319 (376)
..+. .+... ......+..+|+.+++.....+.+.|| |.++ ++.+..+ ++... ++... +
T Consensus 198 ~~~~~~~~~~-----~~~~i~~s~dg~~~~~~~~~~~~i~v~--d~~~--~~~~~~~~~~~~~~------~~~~~--~-- 258 (300)
T TIGR03866 198 EIPGVHPEAV-----QPVGIKLTKDGKTAFVALGPANRVAVV--DAKT--YEVLDYLLVGQRVW------QLAFT--P-- 258 (300)
T ss_pred cccccccccC-----CccceEECCCCCEEEEEcCCCCeEEEE--ECCC--CcEEEEEEeCCCcc------eEEEC--C--
Confidence 1110 00000 000122334566655544444456666 4433 3333322 11110 11110 1
Q ss_pred ccCeEEEcccccCCceEEEEecCCcee
Q 017173 320 MRNSVYFSKVRFFGKRCISYSLNDSRY 346 (376)
Q Consensus 320 ~~n~Iyf~~~~~~~~~~~vy~l~~~~~ 346 (376)
.+..||.... ..+.+.+||+++++.
T Consensus 259 ~g~~l~~~~~--~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 259 DEKYLLTTNG--VSNDVSVIDVAALKV 283 (300)
T ss_pred CCCEEEEEcC--CCCeEEEEECCCCcE
Confidence 3557777653 356788999999874
No 111
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=29.99 E-value=4.7e+02 Score=24.51 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCeEEEEeCCCCeEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCC
Q 017173 120 DSWLLLYRPRTHRVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQN 199 (376)
Q Consensus 120 ~G~ll~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~ 199 (376)
+|-+++..... .++.+|+-||+.+.-...... ..+...+...+.+|+.... .+ .+...-.+.|+..|+.--..+
T Consensus 111 ~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~~~---~~~~~~~v~~~~~v~~~s~-~g-~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 111 DGKIYVGSWDG-KLYALDASTGTLVWSRNVGGS---PYYASPPVVGDGTVYVGTD-DG-HLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred CCeEEEecccc-eEEEEECCCCcEEEEEecCCC---eEEecCcEEcCcEEEEecC-CC-eEEEEEccCCcEEEEEecCCc
Confidence 67766665543 688899988886543322221 2222223333455554321 11 111112223667898433221
Q ss_pred CCCccccceeeeEEeCCeEEEEcc--CCeEEEEeCCCCC
Q 017173 200 RLPFVSSIWNKLVFCNGIFYCLSL--TGWLGVFDPVKRD 236 (376)
Q Consensus 200 ~~p~~~~~~~~~v~~~G~~Y~l~~--~~~i~~~D~~~~~ 236 (376)
.+ ......++..+|.+|+-.. ++.+.++|+..+.
T Consensus 185 -~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 185 -LS--LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -cc--cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11 1233444578899998877 6789999997664
No 112
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=29.93 E-value=4.8e+02 Score=24.61 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCeEEEEccC-----CeEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEe---------cCCCc
Q 017173 215 NGIFYCLSLT-----GWLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTC---------CSENP 280 (376)
Q Consensus 215 ~G~~Y~l~~~-----~~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~---------~~~~~ 280 (376)
...+|+.+.. +.|.++|.++... .-.++....|. .++.-+|+.+.|... ..+.+
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v-~g~i~~G~~P~-----------~~~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRV-LGMTDGGFLPN-----------PVVASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEE-EEEEEccCCCc-----------eeECCCCCEEEEEeccccccccCCCCCEE
Q ss_pred EEEEEecCCccEEEeeccCCc----------EEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCcee
Q 017173 281 IIFKLDQSKMAWEEMKTLDGL----------TLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRY 346 (376)
Q Consensus 281 ~V~~ld~~~~~W~~v~~lg~~----------~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~ 346 (376)
.|| |..+.+=+.--.+|+. .+-+.. .|..+|+.+.. ....+.+.|++++++
T Consensus 80 ~v~--D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~------------dgk~l~V~n~~-p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 80 EVI--DPQTHLPIADIELPEGPRFLVGTYPWMTSLTP------------DNKTLLFYQFS-PSPAVGVVDLEGKAF 140 (352)
T ss_pred EEE--ECccCcEEeEEccCCCchhhccCccceEEECC------------CCCEEEEecCC-CCCEEEEEECCCCcE
No 113
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=29.62 E-value=19 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCCCCCccHHHHHHHHhcCCcccc
Q 017173 33 LHDWSELPAELLELIMCHLTLEDN 56 (376)
Q Consensus 33 ~~~Ws~LP~dll~~Il~rLp~~~l 56 (376)
.-+|.++|+.|-.-|++|+|.-++
T Consensus 116 ~~pw~~rPe~Lk~~ilArIPp~~~ 139 (143)
T COG5469 116 LVPWRKRPEPLKRGILARIPPGDL 139 (143)
T ss_pred ccccccCChhHhcceeeecCCccc
Confidence 468999999999999999996554
No 114
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.49 E-value=4.5e+02 Score=24.20 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCeEEEec-CCe-EEEEeCCCCeEEEEcCCCccee-cC--CCcccceeEEEeecCCCCCCeEEEEEe-ccCCCeEEEEEE
Q 017173 112 GSRVCYTK-DSW-LLLYRPRTHRVFFFNPFTRDMI-KL--PRFELTYQIVAFSCAPTSSSCVVFTVK-HISPTVVAISTC 185 (376)
Q Consensus 112 ~~~~~~s~-~G~-ll~~~~~~~~~~l~NP~T~~~~-~L--P~~~~~~~~~~l~~~p~~~~~~v~~i~-~~~~~~~~~~~y 185 (376)
++.++.+. .+. ++++...-.-..++|+.||+.. .+ |+-...|...+|+.+. + .++... ....++-.|.+|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---~-~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---R-LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---C-EEEEeccccCCCcEEEEEE
Confidence 33344433 344 3344433335789999999854 33 3334455667777542 2 233321 112335578899
Q ss_pred ecC
Q 017173 186 HPG 188 (376)
Q Consensus 186 ~~~ 188 (376)
+..
T Consensus 83 d~~ 85 (305)
T PF07433_consen 83 DAA 85 (305)
T ss_pred ECc
Confidence 887
No 115
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=28.33 E-value=1.2e+02 Score=17.75 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=16.9
Q ss_pred CCeEEEEeCCCCeEEEEcCCCcce
Q 017173 120 DSWLLLYRPRTHRVFFFNPFTRDM 143 (376)
Q Consensus 120 ~G~ll~~~~~~~~~~l~NP~T~~~ 143 (376)
++.|+......+.+.++|+-|++.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeE
Confidence 455666665566888899977764
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=28.10 E-value=2.9e+02 Score=27.11 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=39.8
Q ss_pred eEEEEECCcEEEEEEec-C----------CCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcc
Q 017173 260 KFMVEHKGDILVIYTCC-S----------ENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSK 328 (376)
Q Consensus 260 ~~Lv~~~G~LllV~~~~-~----------~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~ 328 (376)
.++|..+|.++ +++.. + .+-.+|-=-..++..++.-+|+++. .-|.+.+++|||..
T Consensus 176 thiv~~dg~iv-igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~v------------S~PmIV~~RvYFls 242 (668)
T COG4946 176 THIVIKDGIIV-IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNV------------SSPMIVGERVYFLS 242 (668)
T ss_pred eeEEEeCCEEE-EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCc------------CCceEEcceEEEEe
Confidence 46788888443 33321 1 1234443333334455555554432 12567889999987
Q ss_pred cccCCceEEEEecCCcee
Q 017173 329 VRFFGKRCISYSLNDSRY 346 (376)
Q Consensus 329 ~~~~~~~~~vy~l~~~~~ 346 (376)
+-...++++.-||+-+..
T Consensus 243 D~eG~GnlYSvdldGkDl 260 (668)
T COG4946 243 DHEGVGNLYSVDLDGKDL 260 (668)
T ss_pred cccCccceEEeccCCchh
Confidence 654556666666665433
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=27.87 E-value=3.3e+02 Score=27.74 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=50.8
Q ss_pred CCeEEEEccCCeEEEEeCCCCCceee--eeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEecCCccE
Q 017173 215 NGIFYCLSLTGWLGVFDPVKRDWGVL--VVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQSKMAW 292 (376)
Q Consensus 215 ~G~~Y~l~~~~~i~~~D~~~~~~~~~--~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~~~~~W 292 (376)
...||+...+|.|..||.....++.. +.-.|.. |+.....|+=..|+..+|....+..+.+|.+...+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-------H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~--- 133 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-------HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR--- 133 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhccccc-------ccceeEeeccCCCceeEEEccCCceeeeeeeccce---
Confidence 45788888899999999887766511 1111111 11112233334599999998888888888664322
Q ss_pred EEeeccCCcEEEeeCCccc
Q 017173 293 EEMKTLDGLTLFASFLSSQ 311 (376)
Q Consensus 293 ~~v~~lg~~~lFlg~~~s~ 311 (376)
-.|.+ +|+|..+|+
T Consensus 134 ----l~G~~-~~~GH~~Sv 147 (720)
T KOG0321|consen 134 ----LVGGR-LNLGHTGSV 147 (720)
T ss_pred ----eecce-eeccccccc
Confidence 13444 788887765
No 118
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=27.35 E-value=21 Score=24.72 Aligned_cols=12 Identities=58% Similarity=0.648 Sum_probs=7.7
Q ss_pred Cccchhhhhhhh
Q 017173 2 AGKKRRKLKLLA 13 (376)
Q Consensus 2 ~~~~~~~~~~~~ 13 (376)
+|+||||+|-.+
T Consensus 5 ~~~Krrkrk~~t 16 (74)
T PF05077_consen 5 GGKKRRKRKPKT 16 (74)
T ss_pred ccchhcccCCCc
Confidence 567777766554
No 119
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.48 E-value=5.2e+02 Score=23.85 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=57.0
Q ss_pred eEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeecc-CCCCC-----ccc
Q 017173 132 RVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNY-QNRLP-----FVS 205 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~-~~~~p-----~~~ 205 (376)
.++-++.-||....|-..+........ +++.+.+++...+...+.++|.-+++|.. +. +.... ...
T Consensus 132 Gvy~ldr~~g~~~~L~~~ps~KG~~~~-------D~a~F~i~~~~~g~~~i~~~Dli~~~~~~-e~f~~~~s~Dg~~~~~ 203 (339)
T PF09910_consen 132 GVYSLDRRTGKAEKLSSNPSLKGTLVH-------DYACFGINNFHKGVSGIHCLDLISGKWVI-ESFDVSLSVDGGPVIR 203 (339)
T ss_pred eeEEEcccCCceeeccCCCCcCceEee-------eeEEEeccccccCCceEEEEEccCCeEEE-EecccccCCCCCceEe
Confidence 466678888887776555443222221 33445553333445678899999999943 22 11111 011
Q ss_pred cceeeeEEeCCeEEEEccCCeEEEEeCC-CCCceee
Q 017173 206 SIWNKLVFCNGIFYCLSLTGWLGVFDPV-KRDWGVL 240 (376)
Q Consensus 206 ~~~~~~v~~~G~~Y~l~~~~~i~~~D~~-~~~~~~~ 240 (376)
....+++...+++|+.. .|.|.+.|+- .+.++.+
T Consensus 204 ~~~G~~~s~ynR~faF~-rGGi~vgnP~~~e~~~f~ 238 (339)
T PF09910_consen 204 PELGAMASAYNRLFAFV-RGGIFVGNPYNGEEFRFY 238 (339)
T ss_pred eccccEEEEeeeEEEEE-eccEEEeCCCCCCceeEE
Confidence 23455666777777654 4569999997 4455444
No 120
>PRK00178 tolB translocation protein TolB; Provisional
Probab=26.15 E-value=5.8e+02 Score=24.37 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred eEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeee
Q 017173 132 RVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKL 211 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~ 211 (376)
.+.+.|.-.+....+=..........++.+ ++++++........ .+.+++..++.-+.+....... ..-.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpD---G~~la~~s~~~~~~--~l~~~~l~~g~~~~l~~~~g~~-----~~~~ 249 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPD---GKRIAYVSFEQKRP--RIFVQNLDTGRREQITNFEGLN-----GAPA 249 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCC---CCEEEEEEcCCCCC--EEEEEECCCCCEEEccCCCCCc-----CCeE
Q ss_pred EEeCCeEEEEccCC----eEEEEeCCCCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEec
Q 017173 212 VFCNGIFYCLSLTG----WLGVFDPVKRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLDQ 287 (376)
Q Consensus 212 v~~~G~~Y~l~~~~----~i~~~D~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld~ 287 (376)
..-+|...++.... .|+++|+.++....+...... ....-..-+|+-+++.........||.+|.
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~-----------~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAI-----------DTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCC-----------cCCeEECCCCCEEEEEECCCCCceEEEEEC
Q ss_pred CCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCceeecC
Q 017173 288 SKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSRYYPR 349 (376)
Q Consensus 288 ~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~~~~~ 349 (376)
.++++.++..-+...... .... .++.|+|.........+.+++++++....+
T Consensus 319 ~~g~~~~lt~~~~~~~~~---------~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 319 NGGRAERVTFVGNYNARP---------RLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCCCEEEeecCCCCccce---------EECC-CCCEEEEEEccCCceEEEEEECCCCCEEEc
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=25.37 E-value=5.7e+02 Score=23.94 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=34.8
Q ss_pred EEEEecCCCCeeeeccCCCCCccccceee--eEEeCCeEEEEccCCeEEEEeCCCCC--cee
Q 017173 182 ISTCHPGATEWVTDNYQNRLPFVSSIWNK--LVFCNGIFYCLSLTGWLGVFDPVKRD--WGV 239 (376)
Q Consensus 182 ~~~y~~~~~~W~~~~~~~~~p~~~~~~~~--~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~ 239 (376)
......++..|....... .. ..+.. .++.+|++|+...++.|.++|+++.. |+.
T Consensus 37 ~~~~~~g~~~W~~~~~~~-~~---~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~ 94 (370)
T COG1520 37 VANNTSGTLLWSVSLGSG-GG---GIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSY 94 (370)
T ss_pred EEcccCcceeeeeecccC-cc---ceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecc
Confidence 334445677886432111 10 11222 48999999999999999999999865 643
No 122
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.91 E-value=2.5e+02 Score=27.21 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=45.3
Q ss_pred CCcEEEEEEecCCCcEEEEEecCCccEEEeeccCCcEEEeeCCcccccCCCCccccCeEEEcccccCCceEEEEecCCce
Q 017173 266 KGDILVIYTCCSENPIIFKLDQSKMAWEEMKTLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRFFGKRCISYSLNDSR 345 (376)
Q Consensus 266 ~G~LllV~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~~~~~~~vy~l~~~~ 345 (376)
+|+-+++....++...||.+|...+.-.++.+..+ .++. +.+ .-.|..|||..++...-.++.|+++.+.
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g------i~~~---Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG------INTS---PSW-SPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcceecccCCc------cccC---ccC-CCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 57777777777788999999998766333332222 1110 111 1157889998876555567888888775
Q ss_pred ee
Q 017173 346 YY 347 (376)
Q Consensus 346 ~~ 347 (376)
..
T Consensus 318 ~~ 319 (425)
T COG0823 318 VT 319 (425)
T ss_pred ee
Confidence 54
No 123
>PHA02875 ankyrin repeat protein; Provisional
Probab=24.89 E-value=38 Score=32.40 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCCCccHHHHHHHHhcCCcccceeh
Q 017173 33 LHDWSELPAELLELIMCHLTLEDNVHA 59 (376)
Q Consensus 33 ~~~Ws~LP~dll~~Il~rLp~~~l~r~ 59 (376)
...|..||.|+-..||..|+..||..+
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhhh
Confidence 477999999999999999998887543
No 124
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=24.75 E-value=3.3e+02 Score=21.07 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=45.5
Q ss_pred EccCCeEEEEeCCCCC--ceeeeeCCCCCCccccc---ccccceeEEEEECCcEEEEEEecC-------C--CcEEEEEe
Q 017173 221 LSLTGWLGVFDPVKRD--WGVLVVPPPKCPENFFA---KNWWKGKFMVEHKGDILVIYTCCS-------E--NPIIFKLD 286 (376)
Q Consensus 221 l~~~~~i~~~D~~~~~--~~~~~~p~p~~~~~~~~---~~~~~~~~Lv~~~G~LllV~~~~~-------~--~~~V~~ld 286 (376)
++...+|+.+|+-.+. .+.+..|.+........ ......+.+..++|.|-.|..... . .+..|.|.
T Consensus 2 VDl~~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~ 81 (131)
T PF07762_consen 2 VDLWRGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLK 81 (131)
T ss_pred CcCCCCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEec
Confidence 3444568888877654 34555554432211110 011123345557899988876443 1 26789998
Q ss_pred c---CCccEEEeeccCC
Q 017173 287 Q---SKMAWEEMKTLDG 300 (376)
Q Consensus 287 ~---~~~~W~~v~~lg~ 300 (376)
. ...+|++-..+.-
T Consensus 82 ~~~~~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 82 DPEGSSWEWKKDCEVDL 98 (131)
T ss_pred cCCCCCCCEEEeEEEEh
Confidence 7 5788998776543
No 125
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=24.65 E-value=1.4e+02 Score=16.69 Aligned_cols=26 Identities=19% Similarity=0.449 Sum_probs=19.6
Q ss_pred CCeEEEEeCCCCeEEEEcCCCcceec
Q 017173 120 DSWLLLYRPRTHRVFFFNPFTRDMIK 145 (376)
Q Consensus 120 ~G~ll~~~~~~~~~~l~NP~T~~~~~ 145 (376)
.||....+++++..+-+|..|++..-
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W 28 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQW 28 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEES
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEe
Confidence 57887776445689999999998653
No 126
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=24.29 E-value=1.9e+02 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=27.6
Q ss_pred eEEEEcCCCcceecCCCcccceeEEEeecCCCCCCeEEEEEe
Q 017173 132 RVFFFNPFTRDMIKLPRFELTYQIVAFSCAPTSSSCVVFTVK 173 (376)
Q Consensus 132 ~~~l~NP~T~~~~~LP~~~~~~~~~~l~~~p~~~~~~v~~i~ 173 (376)
.++..||.|+.|+.+-+-+.....+.+..++....|.|++..
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEee
Confidence 678899999987655332224445666666666678777643
No 127
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.66 E-value=5.1e+02 Score=25.55 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=35.8
Q ss_pred eeEEeCCeEEEEccCCeEEEEeCCCCC--ceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEec
Q 017173 210 KLVFCNGIFYCLSLTGWLGVFDPVKRD--WGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCC 276 (376)
Q Consensus 210 ~~v~~~G~~Y~l~~~~~i~~~D~~~~~--~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~ 276 (376)
.++..+|.+|+-+.++.|.++|.++++ |+. +.+.+. . ....+...+|.+++.....
T Consensus 401 ~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~-~~~~~~---~-------a~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 401 SLATAGNLVFAGAADGYFRAFDATTGKELWKF-RTPSGI---Q-------ATPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred ceEecCCeEEEECCCCeEEEEECCCCceeeEE-ECCCCc---e-------EcCEEEEeCCEEEEEEEec
Confidence 456778899998889999999998764 542 222111 0 1223345577777776644
No 128
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=21.26 E-value=2.7e+02 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.4
Q ss_pred EeCCeEEEEccCCeEEEEeCCCCCceee
Q 017173 213 FCNGIFYCLSLTGWLGVFDPVKRDWGVL 240 (376)
Q Consensus 213 ~~~G~~Y~l~~~~~i~~~D~~~~~~~~~ 240 (376)
..+|+||.+...+.|+.+|+.+..-..+
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPV 63 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEe
Confidence 4589999999999999999998865444
No 129
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=21.11 E-value=2.9e+02 Score=24.53 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=42.3
Q ss_pred eeeeEEeCCeEEEEcc-CCeEEEEeCCCCCc-eeeeeCCCC--CCcccccccccceeEEEEECCcEEEEEEecC--CCcE
Q 017173 208 WNKLVFCNGIFYCLSL-TGWLGVFDPVKRDW-GVLVVPPPK--CPENFFAKNWWKGKFMVEHKGDILVIYTCCS--ENPI 281 (376)
Q Consensus 208 ~~~~v~~~G~~Y~l~~-~~~i~~~D~~~~~~-~~~~~p~p~--~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~--~~~~ 281 (376)
..+-|+++|.+|.... +..|+.||+.++.- ....+|... .+..+....+ ...-|+.....|.+|-.... +.+.
T Consensus 70 gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~-sdiD~avDE~GLWviYat~~~~g~iv 148 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGH-SDIDLAVDENGLWVIYATPENAGTIV 148 (249)
T ss_pred ccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCC-ccccceecccceeEEecccccCCcEE
Confidence 3456888999988754 56699999998531 111122111 0111111111 23334444445676665443 3466
Q ss_pred EEEEecC
Q 017173 282 IFKLDQS 288 (376)
Q Consensus 282 V~~ld~~ 288 (376)
|-+||+.
T Consensus 149 ~skLdp~ 155 (249)
T KOG3545|consen 149 LSKLDPE 155 (249)
T ss_pred eeccCHH
Confidence 6999884
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=21.05 E-value=9.7e+02 Score=25.10 Aligned_cols=19 Identities=47% Similarity=0.548 Sum_probs=13.8
Q ss_pred CeEEEEcCCCccee-cCCCc
Q 017173 131 HRVFFFNPFTRDMI-KLPRF 149 (376)
Q Consensus 131 ~~~~l~NP~T~~~~-~LP~~ 149 (376)
..+.|+||.|-... .||..
T Consensus 280 g~vrlFnp~tL~y~~Tlpr~ 299 (1080)
T KOG1408|consen 280 GMVRLFNPETLDYAGTLPRS 299 (1080)
T ss_pred ceeeecCcchhhhccccccc
Confidence 36889999998764 46643
No 131
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=20.89 E-value=6.4e+02 Score=22.93 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCe-EEEEcc-CCeEEEEeCCCC-Ccee-----eeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEEEe
Q 017173 215 NGI-FYCLSL-TGWLGVFDPVKR-DWGV-----LVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFKLD 286 (376)
Q Consensus 215 ~G~-~Y~l~~-~~~i~~~D~~~~-~~~~-----~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ld 286 (376)
+|+ +|+... .+.|.+||+++. .... +..+....|. ...+.-+|+.+.|.....+.+.||.++
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~----------~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR----------HMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc----------eEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 564 555554 478999999763 2211 1111111111 112234577776666556788999998
Q ss_pred cCCccEEEeecc
Q 017173 287 QSKMAWEEMKTL 298 (376)
Q Consensus 287 ~~~~~W~~v~~l 298 (376)
..+.+.+.+.++
T Consensus 206 ~~~~~~~~~~~~ 217 (330)
T PRK11028 206 DPHGEIECVQTL 217 (330)
T ss_pred CCCCCEEEEEEE
Confidence 655555544443
No 132
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=20.84 E-value=7.8e+02 Score=23.89 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCeEEEec-CCeEEEEeCC----CCeEEEEcCCCcceecCCCcccce------eEEEeec--CCCCCCeEEE-------
Q 017173 111 YGSRVCYTK-DSWLLLYRPR----THRVFFFNPFTRDMIKLPRFELTY------QIVAFSC--APTSSSCVVF------- 170 (376)
Q Consensus 111 ~~~~~~~s~-~G~ll~~~~~----~~~~~l~NP~T~~~~~LP~~~~~~------~~~~l~~--~p~~~~~~v~------- 170 (376)
..+.+..+. +.++++.-.. .-+.+|+|..|++.+++..+...- ..++|.. --.++.++++
T Consensus 228 dDA~i~yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~~~l 307 (448)
T PF12458_consen 228 DDAEIAYARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDMDGL 307 (448)
T ss_pred hhheeeeeecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccCCCc
Confidence 344555554 4455543321 236899999999877665443200 0111110 0011222222
Q ss_pred ----EEeccCCCeEEEEEEecCCCCeeeeccCCCCCccccceeeeEEeCCeEEEEccCCeEEEEeCCCCCc
Q 017173 171 ----TVKHISPTVVAISTCHPGATEWVTDNYQNRLPFVSSIWNKLVFCNGIFYCLSLTGWLGVFDPVKRDW 237 (376)
Q Consensus 171 ----~i~~~~~~~~~~~~y~~~~~~W~~~~~~~~~p~~~~~~~~~v~~~G~~Y~l~~~~~i~~~D~~~~~~ 237 (376)
.+....++-+-..||....+.-....+.. +. .....++.|+| |.+..+|.+++|.-+++..
T Consensus 308 ~F~r~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~-I~---k~v~tPi~chG--~alf~DG~l~~fra~~~Ep 372 (448)
T PF12458_consen 308 EFERKVRSPNGEDVLYVFYAREEGRYLLLPYNL-IR---KEVATPIICHG--YALFEDGRLVYFRAEGDEP 372 (448)
T ss_pred eEEEEecCCCCceEEEEEEECCCCcEEEEechh-hh---hhhcCCeeccc--eeEecCCEEEEEecCCCCc
Confidence 11222233445667888888887777642 21 34556778887 6677888888888664443
No 133
>PHA02989 ankyrin repeat protein; Provisional
Probab=20.74 E-value=43 Score=33.06 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.6
Q ss_pred CCCCCccHHHHHHHHhcCCcccce
Q 017173 34 HDWSELPAELLELIMCHLTLEDNV 57 (376)
Q Consensus 34 ~~Ws~LP~dll~~Il~rLp~~~l~ 57 (376)
..|+.||.|+...|+..|+..|+.
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~ 480 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFK 480 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHH
Confidence 679999999999999999987763
No 134
>PRK10115 protease 2; Provisional
Probab=20.61 E-value=9.7e+02 Score=24.93 Aligned_cols=120 Identities=8% Similarity=0.010 Sum_probs=57.0
Q ss_pred eeEEeCCeEEEEccC----CeEEEEeCC-CCCceeeeeCCCCCCcccccccccceeEEEEECCcEEEEEEecCCCcEEEE
Q 017173 210 KLVFCNGIFYCLSLT----GWLGVFDPV-KRDWGVLVVPPPKCPENFFAKNWWKGKFMVEHKGDILVIYTCCSENPIIFK 284 (376)
Q Consensus 210 ~~v~~~G~~Y~l~~~----~~i~~~D~~-~~~~~~~~~p~p~~~~~~~~~~~~~~~~Lv~~~G~LllV~~~~~~~~~V~~ 284 (376)
.....++.||+.+.. ..|+..++. .+.|+.+..+... .. .. -+...++.|++... ....-.++.
T Consensus 274 ~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~--~~-------i~-~~~~~~~~l~~~~~-~~g~~~l~~ 342 (686)
T PRK10115 274 SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPREN--IM-------LE-GFTLFTDWLVVEER-QRGLTSLRQ 342 (686)
T ss_pred EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCC--CE-------EE-EEEEECCEEEEEEE-eCCEEEEEE
Confidence 445567889988753 358888887 5678765422110 01 01 11112444444433 334445666
Q ss_pred EecCCccEEEee-ccCCcEEEeeCCcccccCCCCccccCeEEEccccc-CCceEEEEecCCceeec
Q 017173 285 LDQSKMAWEEMK-TLDGLTLFASFLSSQSRADLPGIMRNSVYFSKVRF-FGKRCISYSLNDSRYYP 348 (376)
Q Consensus 285 ld~~~~~W~~v~-~lg~~~lFlg~~~s~~~~~~~g~~~n~Iyf~~~~~-~~~~~~vy~l~~~~~~~ 348 (376)
+|..+.....+. ..+.....++. + ....++.++|...+. ....++.||++++++..
T Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~~----~----~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~ 400 (686)
T PRK10115 343 INRKTREVIGIAFDDPAYVTWIAY----N----PEPETSRLRYGYSSMTTPDTLFELDMDTGERRV 400 (686)
T ss_pred EcCCCCceEEecCCCCceEeeecc----c----CCCCCceEEEEEecCCCCCEEEEEECCCCcEEE
Confidence 676544444433 11111111111 0 011345565544321 35567788887766543
Done!