BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017174
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 25/262 (9%)
Query: 68 VMREITPVLDPSK----HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123
+ RE+ L P + HKG GK+ +I G R Y+GAP + + +LK+G L +
Sbjct: 223 ITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFP 282
Query: 124 AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLG 183
+ S PELI PI D E+ S + L E + + D + +GPGLG
Sbjct: 283 QNLIATSRFPELISVPI-----------DTEKGFFSLQNLQECLELSKDVDVVAIGPGLG 331
Query: 184 RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQ 243
+ ++ E V+E +K + P VID D + ++ S+ P AVLTP+ E RLV+
Sbjct: 332 NNEHVREFVNEFLKTLEK---PAVIDADAINVLDTSVLKERKSP-AVLTPHPGEMARLVK 387
Query: 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRC-GGQG 302
K + + + EL + AK+ V +L K + +++DGE +I G+ GG G
Sbjct: 388 KTVG---DVKYNYELAEEFAKENDCVLVL-KSATTIVTDGE-KTLFNITGNTGLSKGGSG 442
Query: 303 DILSGSVAVFLSWARAKGKATT 324
D+L+G +A F++ + +A+T
Sbjct: 443 DVLTGMIAGFIAQGLSPLEAST 464
>pdb|2AX3|A Chain A, Crystal Structure Of A Putative Carbohydrate Kinase
(Tm0922) From Thermotoga Maritima Msb8 At 2.25 A
Resolution
Length = 502
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 19/256 (7%)
Query: 69 MREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVI 128
+R + P HKG GK+ +I G R Y+GAP + +LK+G L + +
Sbjct: 228 VRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGXGSLKVGTGLVKLAVPFPQNLIA 287
Query: 129 KSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYL 188
S PELI PI D E+ S + L E + + D + +GPGLG + ++
Sbjct: 288 TSRFPELISVPI-----------DTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHV 336
Query: 189 LECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNC 248
E V+E +K + P VID D + ++ S+ P AVLTP+ E RLV+K +
Sbjct: 337 REFVNEFLKTLEK---PAVIDADAINVLDTSVLKERKSP-AVLTPHPGEXARLVKKTVG- 391
Query: 249 EVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGS 308
+ + EL + AK+ V +L K + +++DGE + GG GD+L+G
Sbjct: 392 --DVKYNYELAEEFAKENDCVLVL-KSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTGX 448
Query: 309 VAVFLSWARAKGKATT 324
+A F++ + +A+T
Sbjct: 449 IAGFIAQGLSPLEAST 464
>pdb|3BGK|A Chain A, The Crystal Structure Of Hypothetic Protein Smu.573 From
Streptococcus Mutans
Length = 311
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 25/236 (10%)
Query: 79 SKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVH 138
+ HKG G++ +IGG Y GA AA++ + GA L V KD + S+ PE
Sbjct: 52 NSHKGTFGRVLLIGGNYPYGGAIIXAALACVNSGAGLVTVATHKDNITALHSHLPEA--- 108
Query: 139 PILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKH 198
+ E+ +S +I A D ++ GPGL D L + +++
Sbjct: 109 ---------XAFDXVEKDRLSEQITAA--------DVVLXGPGLAEDD-LAQTTFDVVWQ 150
Query: 199 ARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPEL 258
A + ++IDG + L+ + +LTP+ E++RL + ++ L
Sbjct: 151 AIEPKQTLIIDGSAINLLAKRKPAIWPTKQIILTPHQKEWERLSGLTIPEQIEAATQTAL 210
Query: 259 LQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLS 314
+ I ++ K I G+ + + G + GG GD L+G +A F++
Sbjct: 211 AHFPKETI----LVAKSHQTKIYQGQKIGHIQVGGPYQATGGXGDTLAGXIAGFVA 262
>pdb|2R3B|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3B|B Chain B, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3E|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.95 A
Resolution
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Query: 65 AENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124
+++++ E+ +K G++ +IGG R+Y GA + + + GA L+ V
Sbjct: 24 SKDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIXSTEACINSGAGLTTVITD--- 80
Query: 125 APVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGR 184
+K++ P +H E+ + G E+ + +L V +E+ D +++GPGLG
Sbjct: 81 ---VKNHGP---LHARCPEA-XVVGFEE-------TVLLTNV---VEQADVILIGPGLGL 123
Query: 185 DPYLLECVSEIM-KHARQSNVPIVIDGDGLFLVTNSIDLVSGYP-LAVLTPNVNEYKRLV 242
D + + ++ +H +Q ++IDG + L + + YP V TP+ E++RL
Sbjct: 124 DATAQQILKXVLAQHQKQQW--LIIDGSAITLFSQG-NFSLTYPEKVVFTPHQXEWQRLS 180
Query: 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGE 284
+ + + Q ++G +L+ ++ + GE
Sbjct: 181 HLPIEQQTLANN-----QRQQAKLGSTIVLKSHRTTIFHAGE 217
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+.
pdb|3RPZ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadph
pdb|3RQ2|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadh
pdb|3RQ5|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Coa
pdb|3RQ6|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
Adp-Ribose
pdb|3RQ8|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RQH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P6-Di(Adenosine-5') Hexaphosphate
pdb|3RQQ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RQX|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
Length = 279
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 41/250 (16%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
E +R P D HKG G ++ G + GA A + A++ G + +++
Sbjct: 11 EEHVRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVI 70
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
P+I P+L E+ + D ++ +++ E + + +GPGL +
Sbjct: 71 PLIV---------PVLPEA---TYWRDGWKKAADAQL-------EETYRAIAIGPGLPQT 111
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPL----AVLTPNVNEYKRL 241
E V + + H ++ P+++D L T YP +LTP+ E+ R+
Sbjct: 112 ----ESVQQAVDHVLTADCPVILDAGALAKRT--------YPKREGPVILTPHPGEFFRM 159
Query: 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLIS--DGEIAKSVSIYGSPRRCG 299
+N E+ + A E + A Q+ V +L KG +I+ DG+ + + G+ + G
Sbjct: 160 TGVPVN-ELQKKRA-EYAKEWAAQLQTVIVL-KGNQTVIAFPDGDCWLNPTGNGALAK-G 215
Query: 300 GQGDILSGSV 309
G GD L+G +
Sbjct: 216 GTGDTLTGMI 225
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (Bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution (Rhombohedral Form)
pdb|3MBH|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|B Chain B, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|C Chain C, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|D Chain D, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|E Chain E, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|F Chain F, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
Length = 291
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID---GDGLFLVT 217
KI+AE K +FD + G LG P ++ VS+ +K RQ + IV D GD L T
Sbjct: 66 KIIAEWKKLEVQFDAIYTG-YLGS-PRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYT 123
Query: 218 N--------SIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGV 269
N L++ V+TPN+ E L+ + + D + E L+ L+ + V
Sbjct: 124 NFDXEXVKEXRHLITK--ADVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQV 181
Query: 270 TIL 272
I+
Sbjct: 182 VII 184
>pdb|1KYH|A Chain A, Structure Of Bacillus Subtilis Yxko, A Member Of The
Upf0031 Family And A Putative Kinase
Length = 276
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 40/225 (17%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
E +R P D HKG G ++ G + GA A + A + G + +++
Sbjct: 8 EEHVRATLPERDAESHKGTYGTALLLAGSDDXPGAALLAGLGAXRSGLGKLVIGTSENVI 67
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
P+I P+L E+ + D ++ +++ E + + +GPGL +
Sbjct: 68 PLIV---------PVLPEA---TYWRDGWKKAADAQL-------EETYRAIAIGPGLPQT 108
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPL----AVLTPNVNEYKRL 241
E V + + H ++ P+++D L T YP +LTP+ E+ R
Sbjct: 109 ----ESVQQAVDHVLTADCPVILDAGALAKRT--------YPKREGPVILTPHPGEFFRX 156
Query: 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLIS--DGE 284
+N E+ + A E + A Q+ V +L KG +I+ DG+
Sbjct: 157 TGVPVN-ELQKKRA-EYAKEWAAQLQTVIVL-KGNQTVIAFPDGD 198
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 144 SYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN 203
S +I L++EE C +I+ + R D +V G+ L+ +EI++ +++
Sbjct: 160 SRDIDFLKEEEHDCFLEEIMTK------REDLVVAPAGI-----TLKEANEILQRSKKGK 208
Query: 204 VPIVIDGDGLFLVTNSIDLVSG--YPLA 229
+PIV + D L + DL YPLA
Sbjct: 209 LPIVNEDDELVAIIARTDLKKNRDYPLA 236
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 37/129 (28%)
Query: 145 YNISGLEDEERRCIS-------SKILA---EVDK-----WMERFDCLV-----------V 178
YNI G E R CI+ ++IL E+D +++ F+ L+ +
Sbjct: 101 YNIKG---ETRNCIAILHEGQQTEILEQGPEIDNQEAAGFIKHFEQLLEKVEAVAISGSL 157
Query: 179 GPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEY 238
GL +D Y ++I++ + VP+++D G L T L + Y V+ PN++E
Sbjct: 158 PKGLNQDYY-----AQIIERCQNKGVPVILDCSGATLQT---VLENPYKPTVIKPNISEL 209
Query: 239 KRLVQKVLN 247
+L+ + L+
Sbjct: 210 YQLLNQPLD 218
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 144 SYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN 203
S +I L++EE + L E+ M + + LVV P L+ +EI++ +++
Sbjct: 160 SRDIDFLKEEEH----DRFLEEI---MTKREDLVVAPA----GITLKEANEILQRSKKGK 208
Query: 204 VPIVIDGDGLFLVTNSIDLVSG--YPLA 229
+PIV + D L + DL YPLA
Sbjct: 209 LPIVNENDELVAIIARTDLKKNRDYPLA 236
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 181 GLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240
GL +D Y ++I++ + VP+++D G L T L + Y V+ PN++E +
Sbjct: 160 GLNQDYY-----AQIIERCQNKGVPVILDCSGATLQT---VLENPYKPTVIKPNISELYQ 211
Query: 241 LVQKVLN 247
L+ + L+
Sbjct: 212 LLNQPLD 218
>pdb|3TJ0|A Chain A, Crystal Structure Of Influenza B Virus Nucleoprotein
pdb|3TJ0|B Chain B, Crystal Structure Of Influenza B Virus Nucleoprotein
Length = 562
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 327 MNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLED 371
++P+++ AGS + R++ + K TL + I +GR++ D
Sbjct: 222 LDPSLISTFAGSTIPRRSGATGVAIKGGGTLVAEAIRFIGRAMAD 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,907,714
Number of Sequences: 62578
Number of extensions: 453005
Number of successful extensions: 1016
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 16
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)