BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017176
(376 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553550|ref|XP_002517816.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis]
gi|223543088|gb|EEF44623.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis]
Length = 375
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/375 (83%), Positives = 343/375 (91%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M +Y PP FSVAPMMDWTD+HYRTLARLISKH+WLYTEMLAAETI+YQQGNLDRFLAF
Sbjct: 1 MGVGRYHPPLFSVAPMMDWTDHHYRTLARLISKHSWLYTEMLAAETIVYQQGNLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSNLDNLAKATELA AY YDEIN NCGCPSP+VAGHGCFGV LMLDPK
Sbjct: 61 SPQQHPIVLQIGGSNLDNLAKATELATAYGYDEINFNCGCPSPRVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAANT+VPVSVKCRIGVD+HDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGVDNHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENR IPPLKYEYY+ALLRDFPDL FT+NGGIN +DEVN ALR+GAH VMVGRAA+
Sbjct: 181 GISPAENRKIPPLKYEYYFALLRDFPDLRFTINGGINCIDEVNLALREGAHGVMVGRAAF 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW LGHVD+AIYGAP SGLTRRQV+E+YQ Y DAILGTYGNNRP+VRDV+KPLL F
Sbjct: 241 NNPWTVLGHVDSAIYGAPESGLTRRQVLEQYQAYADAILGTYGNNRPNVRDVVKPLLGLF 300
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KR+ADAAFQ+C T+KSF EET+VAIPD+VLDSPI EAP GR+DLF +V L
Sbjct: 301 YSEPGNGLWKRRADAAFQSCTTIKSFFEETLVAIPDTVLDSPIAEAPSGRQDLFTNVRGL 360
Query: 361 LPPPYKAREQEVLYA 375
LPPPY REQ+V YA
Sbjct: 361 LPPPYATREQDVAYA 375
>gi|225450085|ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis
vinifera]
Length = 433
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 57 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 177 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 237 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 297 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 356
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 357 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 416
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 417 LPLPYETSEQEQEVLYA 433
>gi|297736275|emb|CBI24913.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 47 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 106
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 107 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 166
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 167 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 226
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 227 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 286
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 287 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 346
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 347 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 406
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 407 LPLPYETSEQEQEVLYA 423
>gi|359487300|ref|XP_003633563.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 2 [Vitis
vinifera]
Length = 377
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/377 (82%), Positives = 349/377 (92%), Gaps = 2/377 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA QYLPPWFSVAPMMDWT+NHYRTLARLISKHAWLYTEM+AAETI+YQ+ NLDRFL F
Sbjct: 1 MVAGQYLPPWFSVAPMMDWTNNHYRTLARLISKHAWLYTEMIAAETIVYQEKNLDRFLEF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKATELAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPDQHPIVLQIGGNNLDNIAKATELANSYCYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCDFIYKVSS SPTRHFIIHSRKALLN
Sbjct: 121 FVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCDFIYKVSSQSPTRHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGINCVDEVNAALRQGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD++L YG +RP +R+V+KPLLHFF
Sbjct: 241 HNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGDSVLEKYGPHRPSIREVVKPLLHFF 300
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+SEPGNGL+KRKADAAF CKT+KSFLEET+VAIPDSVLD+P+ +AP GREDLFA++ DL
Sbjct: 301 YSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPDSVLDAPVAKAPSGREDLFANLSDL 360
Query: 361 LPPPYKA--REQEVLYA 375
LP PY+ +EQEVLYA
Sbjct: 361 LPLPYETSEQEQEVLYA 377
>gi|449516697|ref|XP_004165383.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]
Length = 431
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 343/373 (91%), Gaps = 1/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA +Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAF
Sbjct: 57 MVAGRYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLN
Sbjct: 177 FVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAY
Sbjct: 237 GISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD++LG YG N+P++RDV+KPLLH F
Sbjct: 297 QNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+++PGNG +KRKADAAF CKT+KSF EETIVAIPD VLD+P+ E P GREDLFA+ L
Sbjct: 356 YTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPDYVLDAPVAEPPSGREDLFANTLSL 415
Query: 361 LPPPYKAREQEVL 373
+PPPY+ REQ+V+
Sbjct: 416 MPPPYEDREQKVV 428
>gi|449463996|ref|XP_004149715.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]
Length = 431
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 343/373 (91%), Gaps = 1/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA +Y PPWFSVAPMM+ TDNHYRTLARLISKHAWLYTEMLAAETI+YQ+ NLDRFLAF
Sbjct: 57 MVAGRYSPPWFSVAPMMECTDNHYRTLARLISKHAWLYTEMLAAETIVYQKDNLDRFLAF 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGG+NLDN+AKA ELAN Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 117 SPDQHPIVLQIGGNNLDNIAKAIELANPYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HF+IHSRKALLN
Sbjct: 177 FVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFVIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGINTVDE NAALR GAH VM+GRAAY
Sbjct: 237 GISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGINTVDEANAALRLGAHGVMMGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD++LG YG N+P++RDV+KPLLH F
Sbjct: 297 QNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGDSVLGRYG-NKPNIRDVVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
+++PGNG +KRKADAAF CKT+KSF EETIVAIPD VLD+P+ E P GREDLFA+ L
Sbjct: 356 YTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPDYVLDAPVAEPPSGREDLFANTLSL 415
Query: 361 LPPPYKAREQEVL 373
+PPPY+ REQ+V+
Sbjct: 416 MPPPYEDREQKVV 428
>gi|224055152|ref|XP_002298425.1| predicted protein [Populus trichocarpa]
gi|222845683|gb|EEE83230.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/375 (82%), Positives = 341/375 (90%), Gaps = 2/375 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M QY PP FSVAPMMDWTDNHYRT+AR+ISKHAWLYTEMLAAETI++QQG+LDRFLAF
Sbjct: 1 MGVEQYRPPLFSVAPMMDWTDNHYRTVARIISKHAWLYTEMLAAETIVHQQGDLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SPEQHPIVLQIGG+NLDN+AKAT LAN+Y YDEINLNCGCPSPKVAGHGCFGV LMLDPK
Sbjct: 61 SPEQHPIVLQIGGNNLDNIAKATRLANSYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FVGEAMSVIAANT+VPVSVKCRIG+DDHDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVGEAMSVIAANTDVPVSVKCRIGLDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGIN VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGINCVDEVNAALREGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
W TL HVDTAIYGAPSSGLTRRQV+E+YQ+YGDA+LGTYGN+RP++RD++KPL FF
Sbjct: 241 NYLWNTLAHVDTAIYGAPSSGLTRRQVLEQYQVYGDAVLGTYGNSRPNIRDLIKPLFGFF 300
Query: 301 HSEPGNGLFKRKADAAFQ--TCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVH 358
+SEPGN L+KRKADAAFQ TVKSF EET+VAIPD+VLDS E P GR+DLFA+V
Sbjct: 301 YSEPGNNLWKRKADAAFQMKNITTVKSFFEETLVAIPDAVLDSHAAELPSGRKDLFANVR 360
Query: 359 DLLPPPYKAREQEVL 373
LLPPPY+ REQEV+
Sbjct: 361 GLLPPPYETREQEVV 375
>gi|356525006|ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]
Length = 430
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 298/373 (79%), Positives = 338/373 (90%), Gaps = 2/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
+VAR +LPPWFSVAPMMDWTD+HYRTLARLISKHAWLYTEMLAAETI++Q+ NLDRFLA+
Sbjct: 57 VVARYHLPPWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAY 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSN++NLAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLML+PK
Sbjct: 117 SPDQHPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCDFIY+VSSLSPT+HFIIHSRKALLN
Sbjct: 177 FVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI +VDEV+AA GAH VMVGRAAY
Sbjct: 237 GISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGITSVDEVSAAREAGAHGVMVGRAAY 296
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW LGHVD AIYG PS LTRRQV+E+Y +YGD++LG YG +RP +RD++KPLLH F
Sbjct: 297 NNPWQILGHVDAAIYGTPSCDLTRRQVLERYLVYGDSVLGKYG-HRPTLRDIVKPLLHLF 355
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
HSEPGNGL+KRKADAAF+ C T++SF EET+VAIPDSVLDSP+ E P GR DLFA++H+L
Sbjct: 356 HSEPGNGLWKRKADAAFKNCTTMESFFEETLVAIPDSVLDSPVAEPPPGR-DLFANMHNL 414
Query: 361 LPPPYKAREQEVL 373
LP PY+ RE V+
Sbjct: 415 LPAPYRTREATVI 427
>gi|224106093|ref|XP_002314040.1| predicted protein [Populus trichocarpa]
gi|222850448|gb|EEE87995.1| predicted protein [Populus trichocarpa]
Length = 380
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/375 (79%), Positives = 337/375 (89%), Gaps = 2/375 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M A +Y PP FSVAPMM+WTD HYRT+AR+ISKHAWLYTEMLAAETI+YQQGNLDRFLAF
Sbjct: 1 MGAERYRPPLFSVAPMMEWTDKHYRTVARIISKHAWLYTEMLAAETIVYQQGNLDRFLAF 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
EQHPIVLQIGG+NLDN+AKAT+LANAY +DEINLNCGCPS KVAGHGCFG LMLDPK
Sbjct: 61 PSEQHPIVLQIGGNNLDNIAKATQLANAYGFDEINLNCGCPSAKVAGHGCFGARLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMSVIAANT+VPVSVKCRIGVDDHDSYN+LCDFIYKVSSLSPT+HFIIHSRKALLN
Sbjct: 121 FVSEAMSVIAANTDVPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLN 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI+ VDEVNAALR+GAH VMVGRAAY
Sbjct: 181 GISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGIDCVDEVNAALREGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
N W TL HVD+A+YG PSSGLTRRQV+E+YQ+YGDA+LGTYGNNRP++R++++PL FF
Sbjct: 241 NNLWNTLAHVDSAVYGEPSSGLTRRQVLEQYQVYGDAVLGTYGNNRPNMRELIRPLSGFF 300
Query: 301 HSEPGNGLFKRKADAAF--QTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVH 358
+SEPGN L+KRKADAAF + KTVKSF EET+ AIPD+VLDSP+ E P GR DLFA+V
Sbjct: 301 YSEPGNSLWKRKADAAFLNKNIKTVKSFFEETLAAIPDAVLDSPVAELPSGRIDLFANVR 360
Query: 359 DLLPPPYKAREQEVL 373
LLPPPY+ R +EV+
Sbjct: 361 GLLPPPYETRTEEVV 375
>gi|388507496|gb|AFK41814.1| unknown [Lotus japonicus]
Length = 425
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 297/368 (80%), Positives = 329/368 (89%), Gaps = 1/368 (0%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPPWFSVAPMM+WTD+HYRTLARLISKHAWLYTEMLAAETI+YQQ NLDRFLAFSP+QH
Sbjct: 56 YLPPWFSVAPMMEWTDHHYRTLARLISKHAWLYTEMLAAETIVYQQDNLDRFLAFSPDQH 115
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQIGGSN++ LAKATELANAY YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV EA
Sbjct: 116 PIVLQIGGSNVEKLAKATELANAYGYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVAEA 175
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS I ANTNVPVSVKCRIGVDDHDSY++LCDFI+KVSSLSPT+HFIIHSRKALLNGISPA
Sbjct: 176 MSAITANTNVPVSVKCRIGVDDHDSYDELCDFIFKVSSLSPTKHFIIHSRKALLNGISPA 235
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +VDEV AA GA+ V VGRAAY NPW+
Sbjct: 236 ENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVYAAREAGAYGVTVGRAAYNNPWH 295
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
LGHVDT IYGAPS LTRRQV+EKY +YGD++LG YG RP VRD++KPLL+ FHS PG
Sbjct: 296 ILGHVDTVIYGAPSCSLTRRQVLEKYIVYGDSVLGKYG-RRPTVRDIVKPLLNLFHSAPG 354
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPY 365
NGL+KRKADAAF+ C T+KSF EET+VAIPDSVLDSP+ E GR DLFA++ LLPPPY
Sbjct: 355 NGLWKRKADAAFRHCTTIKSFFEETLVAIPDSVLDSPVVEPTPGRRDLFANMDSLLPPPY 414
Query: 366 KAREQEVL 373
RE+ V+
Sbjct: 415 TTREEAVI 422
>gi|356537294|ref|XP_003537164.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]
Length = 372
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/373 (78%), Positives = 335/373 (89%), Gaps = 1/373 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MVA Y PP FSVAPMMDWTD+HYRTLARLISKHAWLYTEMLAAETI+YQ+GNLDRFLA+
Sbjct: 1 MVADHYSPPLFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVYQKGNLDRFLAY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSNLDNLAKATELANAY YDEIN NCGCPSP+VAG GCFGV LMLDPK
Sbjct: 61 SPDQHPIVLQIGGSNLDNLAKATELANAYCYDEINFNCGCPSPRVAGRGCFGVRLMLDPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EA+S+IAANTNVPV+VKCRIGVDDHDSYN+LCDFIYKVSSLSP +HF+IHSRKALL
Sbjct: 121 FVAEAISLIAANTNVPVTVKCRIGVDDHDSYNELCDFIYKVSSLSPAKHFVIHSRKALLK 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SPAENR+IPPLKYEY+Y LLRDFPDL+FT+NGGI ++DEVN AL+ GAH VMVGRAAY
Sbjct: 181 GLSPAENRSIPPLKYEYFYGLLRDFPDLSFTINGGIASIDEVNGALKAGAHGVMVGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW+ LGHVDTAIYGA SSGLTRRQV+EKYQ+YGD++L YG P +RD++KPLL FF
Sbjct: 241 NNPWHILGHVDTAIYGASSSGLTRRQVLEKYQVYGDSVLQRYGLG-PSLRDIVKPLLGFF 299
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
HSEPGNGL+KRKAD+A QTC T+KSF EET+VAIPDSVLDS + + GR D+FA+++
Sbjct: 300 HSEPGNGLWKRKADSAVQTCTTIKSFFEETLVAIPDSVLDSAVVKPQSGRGDIFANIYSS 359
Query: 361 LPPPYKAREQEVL 373
LPPPY+ RE++V+
Sbjct: 360 LPPPYRTREEDVI 372
>gi|217075895|gb|ACJ86307.1| unknown [Medicago truncatula]
Length = 432
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/375 (78%), Positives = 334/375 (89%), Gaps = 1/375 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ +QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETI++Q+ NLDRFLA+
Sbjct: 59 VLGKQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAY 118
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SPEQHPIVLQIGGSN+++LAKATELANAY YDEINLNCGCPSP+VAGHG FGVSLMLDPK
Sbjct: 119 SPEQHPIVLQIGGSNIESLAKATELANAYCYDEINLNCGCPSPRVAGHGSFGVSLMLDPK 178
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMS IAANTNVPVSVKCRIGVDD DSY++LC+F+ VSSLSPT+HFIIHSRKALLN
Sbjct: 179 FVAEAMSAIAANTNVPVSVKCRIGVDDRDSYDELCEFVSTVSSLSPTKHFIIHSRKALLN 238
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
GISPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +VDEVNAA GAH VM+GRAA+
Sbjct: 239 GISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVNAARDAGAHGVMIGRAAF 298
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
NPW+ LGHVDTAIYGAPS GLTRRQV+EKY +YGD+ LG YG +RP VRD++KPLL+ F
Sbjct: 299 YNPWHILGHVDTAIYGAPSCGLTRRQVLEKYIVYGDSELGKYG-HRPTVRDIVKPLLNLF 357
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDL 360
HS PGNG +KR ADAAF+ C T+KSF EETI AIPDSVLDSP+ E P GR DLFA++ L
Sbjct: 358 HSAPGNGQWKRNADAAFRNCTTIKSFFEETIDAIPDSVLDSPVSEPPLGRTDLFANIDSL 417
Query: 361 LPPPYKAREQEVLYA 375
LPP Y+ RE+ V+ A
Sbjct: 418 LPPRYETREEVVICA 432
>gi|145339824|ref|NP_567149.2| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
gi|24030197|gb|AAN41279.1| unknown protein [Arabidopsis thaliana]
gi|332646975|gb|AEE80496.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
Length = 419
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/371 (77%), Positives = 337/371 (90%), Gaps = 1/371 (0%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 49 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 108
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEA
Sbjct: 109 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 168
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 169 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 228
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 229 DNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 288
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE G
Sbjct: 289 TLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENG 348
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPP 364
N L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPP
Sbjct: 349 NSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPP 408
Query: 365 YKAREQEVLYA 375
Y+A E+ +L A
Sbjct: 409 YEAGEEIILCA 419
>gi|21536881|gb|AAM61213.1| unknown [Arabidopsis thaliana]
Length = 404
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/371 (77%), Positives = 337/371 (90%), Gaps = 1/371 (0%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 34 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 93
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEA
Sbjct: 94 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEA 153
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 154 MSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 213
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 214 DNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 273
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
TLGHVDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE
Sbjct: 274 TLGHVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENA 333
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPP 364
N L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPP
Sbjct: 334 NSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPP 393
Query: 365 YKAREQEVLYA 375
Y+A E+ +L A
Sbjct: 394 YEAGEEIILCA 404
>gi|297817686|ref|XP_002876726.1| hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp.
lyrata]
gi|297322564|gb|EFH52985.1| hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp.
lyrata]
Length = 405
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/369 (76%), Positives = 333/369 (90%), Gaps = 1/369 (0%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMM+WTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 34 YLPPSFSVAPMMEWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQANLDRFLAFSPQQH 93
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGV LML PK VGEA
Sbjct: 94 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVRLMLKPKLVGEA 153
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAANTNVPV+VKCRIGVDDHDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA
Sbjct: 154 MSAIAANTNVPVTVKCRIGVDDHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPA 213
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
+NR IPPLKYEY+YAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW
Sbjct: 214 DNRRIPPLKYEYFYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQ 273
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
LGHVDTA+YG PS GLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE G
Sbjct: 274 MLGHVDTAVYGVPSRGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENG 333
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPP 364
N L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPP
Sbjct: 334 NSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGEEDVFADVHNVLPPP 393
Query: 365 YKAREQEVL 373
Y+A + ++
Sbjct: 394 YEAAGEGII 402
>gi|356512241|ref|XP_003524829.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase A-like
[Glycine max]
Length = 437
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/380 (74%), Positives = 327/380 (86%), Gaps = 9/380 (2%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
+VAR YLPPWFSVAPMMDWTD+HYRTL RLISKHAWLYTEMLAAETI++Q+ NLDRFLA+
Sbjct: 57 VVARYYLPPWFSVAPMMDWTDHHYRTLVRLISKHAWLYTEMLAAETIVHQKDNLDRFLAY 116
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
SP+QHPIVLQIGGSN++NLAKATELAN Y YDEINLNCGCPSPKVAGHGCFGVSLML+PK
Sbjct: 117 SPDQHPIVLQIGGSNIENLAKATELANVYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPK 176
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCDFIY+VSSLSPT+HFIIHSRKALLN
Sbjct: 177 FVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLN 236
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-- 238
GISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI+ VDEV + + ++
Sbjct: 237 GISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGISRVDEVRCCHXNNSVYXILIFIXI 296
Query: 239 -----AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVM 293
A + PW LGHVD AIY PS LTRRQV+EKY +YGD++LG YG +R +RDV+
Sbjct: 297 FRNFLALKLPWQILGHVDAAIYDKPSCDLTRRQVLEKYLVYGDSVLGKYG-HRSTLRDVV 355
Query: 294 KPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDL 353
KPLLH FHSEPGNGL+KRKADAAF+ C T++SF EET+VAIPDSVLDS + E+P GR DL
Sbjct: 356 KPLLHLFHSEPGNGLWKRKADAAFKNCTTIESFFEETLVAIPDSVLDSLVAESPPGR-DL 414
Query: 354 FADVHDLLPPPYKAREQEVL 373
FA++H+LLPPPY+ RE+ ++
Sbjct: 415 FANMHNLLPPPYRTREEAII 434
>gi|7573334|emb|CAB87804.1| putative protein [Arabidopsis thaliana]
Length = 456
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/423 (67%), Positives = 337/423 (79%), Gaps = 53/423 (12%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMMDWTDNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QH
Sbjct: 34 YLPPSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQH 93
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK----- 120
PIVLQ+GGSN++NLAKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK
Sbjct: 94 PIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKVRYFT 153
Query: 121 -------------------FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC------ 155
VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LC
Sbjct: 154 PPHDFKRYLLFLNFTLSFKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCELFLLS 213
Query: 156 ----------------------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 193
DFIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPL
Sbjct: 214 VFLKSRMDLPLRSNTAFPLLLGDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPL 273
Query: 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTA 253
KYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW TLG VDTA
Sbjct: 274 KYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTA 333
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+A
Sbjct: 334 VYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRA 393
Query: 314 DAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEV 372
DAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPPY+A E+ +
Sbjct: 394 DAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEII 453
Query: 373 LYA 375
L A
Sbjct: 454 LCA 456
>gi|145332939|ref|NP_001078335.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
gi|332646976|gb|AEE80497.1| FMN-linked oxidoreductase-like protein protein [Arabidopsis
thaliana]
Length = 386
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/357 (76%), Positives = 324/357 (90%), Gaps = 1/357 (0%)
Query: 20 TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 79
+DNHYRTLARLI+KHAWLYTEM+AAET+++QQ NLDRFLAFSP+QHPIVLQ+GGSN++NL
Sbjct: 30 SDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENL 89
Query: 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139
AKA +L++AY YDEINLNCGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+V
Sbjct: 90 AKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTV 149
Query: 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199
KCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYY
Sbjct: 150 KCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYY 209
Query: 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPS 259
AL+RDFPDL FT+NGGI +V +VNAAL++GAH VMVGRAAY NPW TLG VDTA+YG PS
Sbjct: 210 ALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPS 269
Query: 260 SGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 319
SGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+
Sbjct: 270 SGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKE 329
Query: 320 CKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 375
C++V S LEE++ AIPD VLDSPI +P G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 330 CRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 386
>gi|297795405|ref|XP_002865587.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311422|gb|EFH41846.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 388
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/372 (72%), Positives = 318/372 (85%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
V+ Y PP FS+APMM WTDNHYRTLARLI+KHAWLYTEMLAAETI+YQ+ NLD FLA+S
Sbjct: 3 VSDAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAYS 62
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
P+QHPIVLQIGG NL+NLAKAT LANAY YDEIN NCGCPSPKV+G GCFG LMLDPKF
Sbjct: 63 PDQHPIVLQIGGRNLENLAKATRLANAYGYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
VGEAMSVIA+NTN V+VKCRIGVDDHDSYN+LCDFI+ VSSLSPT+HFIIHSRKALL+G
Sbjct: 123 VGEAMSVIASNTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGIN+V E +AALR GAH VM+GRA Y
Sbjct: 183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NPW+TLGHVDT IYG+PSSG+TRRQV+EKYQ+YG+++LG YG RP++RD+++PL++ FH
Sbjct: 243 NPWHTLGHVDTVIYGSPSSGITRRQVLEKYQVYGESVLGKYGKGRPNLRDIVRPLINLFH 302
Query: 302 SEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLL 361
SE GNG +KR+ DAA C T+KSFL+E + AIPD VLDS + GREDLFADV LL
Sbjct: 303 SESGNGQWKRRTDAALLHCTTLKSFLDEVLPAIPDFVLDSFAFKEATGREDLFADVRRLL 362
Query: 362 PPPYKAREQEVL 373
PPPY + L
Sbjct: 363 PPPYGKESSKAL 374
>gi|15238854|ref|NP_199608.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|145334771|ref|NP_001078731.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|10177748|dbj|BAB11061.1| unnamed protein product [Arabidopsis thaliana]
gi|18175722|gb|AAL59916.1| unknown protein [Arabidopsis thaliana]
gi|20466015|gb|AAM20229.1| unknown protein [Arabidopsis thaliana]
gi|332008217|gb|AED95600.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
gi|332008218|gb|AED95601.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana]
Length = 387
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 269/372 (72%), Positives = 318/372 (85%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
V+ Y PP FS+APMM WTDNHYRTLARLI+KHAWLYTEMLAAETI+YQ+ NLD FLAFS
Sbjct: 3 VSEAYSPPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFS 62
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
P+QHPIVLQIGG NL+NLAKAT LANAY YDEIN NCGCPSPKV+G GCFG LMLDPKF
Sbjct: 63 PDQHPIVLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKF 122
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
VGEAMSVIAANTN V+VKCRIGVDDHDSYN+LCDFI+ VSSLSPT+HFIIHSRKALL+G
Sbjct: 123 VGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSG 182
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGIN+V E +AALR GAH VM+GRA Y
Sbjct: 183 LSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYY 242
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+++LG YG RP++RD+++PL++ FH
Sbjct: 243 NPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFH 302
Query: 302 SEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLL 361
SE GNG +KR+ DAA C T++SFL+E + AIPD VLDS + GREDLFADV LL
Sbjct: 303 SESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLL 362
Query: 362 PPPYKAREQEVL 373
PPPY+ + L
Sbjct: 363 PPPYEKESFKAL 374
>gi|125547565|gb|EAY93387.1| hypothetical protein OsI_15183 [Oryza sativa Indica Group]
Length = 437
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 264/362 (72%), Positives = 312/362 (86%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
+LPP FSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ NLDRFLAF EQH
Sbjct: 60 HLPPLFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQH 119
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQIGGSNLDNLAKATELANAY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+A
Sbjct: 120 PIVLQIGGSNLDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDA 179
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAAN NVPVS+KCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPA
Sbjct: 180 MSAIAANCNVPVSIKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPA 239
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKYEYY+ALLRDFPD+ FTLNGGI T+D+V A++R+GAH VMVGRAAY NPW
Sbjct: 240 ENRKVPPLKYEYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWN 299
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
LGHVD+ +YG P+ +RRQ++E YQ+YGD+I+G YG +RP+VR ++KPLL+ FHSEPG
Sbjct: 300 MLGHVDSEVYGMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPG 359
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPY 365
NGL+KRKAD+ + CKT++SFLEET+ AIP+SVLD+PI + E FAD+ LLPP Y
Sbjct: 360 NGLWKRKADSTLRHCKTLESFLEETLDAIPNSVLDAPIGKEAYIEEGHFADMDSLLPPRY 419
Query: 366 KA 367
+
Sbjct: 420 SS 421
>gi|357167249|ref|XP_003581072.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Brachypodium
distachyon]
Length = 436
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/361 (72%), Positives = 304/361 (84%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+YLPP FSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ LDRFLAF EQ
Sbjct: 58 EYLPPLFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETILHQKDKLDRFLAFPAEQ 117
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HPIVLQIGGSNLDNLAKATELA+AY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+
Sbjct: 118 HPIVLQIGGSNLDNLAKATELASAYSYDEINLNCGCPSGKVAGHGCFGAQLMYDPEFVGD 177
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
AMS IAAN +VPVSVKCRIGVDD DSY +LC+F+ K+ S SPTRHFIIH+RKALL+G+SP
Sbjct: 178 AMSAIAANCDVPVSVKCRIGVDDRDSYEELCEFVDKIVSKSPTRHFIIHARKALLSGLSP 237
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
AENRTIPPLKYEYYYALLRDFP++ FTLNGGI T+ +V+ ++R+GAH MVGRAAY NPW
Sbjct: 238 AENRTIPPLKYEYYYALLRDFPEVHFTLNGGITTIAQVSESIRQGAHRAMVGRAAYNNPW 297
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LGHVD+ IYG P+S +RRQ++E YQIYGD+I+G YG RP+VR ++KPLLH FHSEP
Sbjct: 298 NMLGHVDSEIYGMPTSCSSRRQILESYQIYGDSIIGQYGITRPNVRQLVKPLLHLFHSEP 357
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPP 364
GN L+KRKAD+ + CKT++ FL ET+ AIPDSVLD+PI E F+ V LPP
Sbjct: 358 GNSLWKRKADSTLRHCKTLEQFLNETLDAIPDSVLDAPIFREASMEEGYFSHVDSSLPPR 417
Query: 365 Y 365
Y
Sbjct: 418 Y 418
>gi|226493267|ref|NP_001141027.1| uncharacterized protein LOC100273106 [Zea mays]
gi|194702264|gb|ACF85216.1| unknown [Zea mays]
gi|195645254|gb|ACG42095.1| tRNA-dihydrouridine synthase A [Zea mays]
gi|414587841|tpg|DAA38412.1| TPA: tRNA-dihydrouridine synthase A [Zea mays]
Length = 425
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/371 (70%), Positives = 308/371 (83%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
++LPP FSVAPMMDWTDNHYRTLARLIS+HAWLYTEM+ AETI++Q+ NLDRFLAF EQ
Sbjct: 52 KHLPPLFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDNLDRFLAFPEEQ 111
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HPIVLQIGGSNL+NLAKATELAN Y+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+
Sbjct: 112 HPIVLQIGGSNLENLAKATELANDYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGD 171
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
AMS IAAN +VPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SP
Sbjct: 172 AMSTIAANCDVPVSVKCRIGVDDRDSYEELCEFVDKVISKSPTRHFIIHARKALLSGLSP 231
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
AENR IPPLKYEYY+ALLRDFP++ FTLNGGI V +V+A++R+GAH VMVGRAAY NPW
Sbjct: 232 AENRKIPPLKYEYYFALLRDFPEIKFTLNGGITNVSQVSASMRQGAHGVMVGRAAYNNPW 291
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LGHVD IYG + ++RRQ++E YQ YGD+I+ YG +RP+VR ++KPLL+ FHSEP
Sbjct: 292 NMLGHVDGEIYGKQTRYISRRQILENYQAYGDSIIDQYGPSRPNVRQLVKPLLNLFHSEP 351
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPP 364
GN L+KRKAD+A + CKTVK+FLEET+ AI DSVLD P+ P E+ FA V LLPP
Sbjct: 352 GNSLWKRKADSALRHCKTVKTFLEETLDAISDSVLDKPVNREPSSDEEYFASVDSLLPPK 411
Query: 365 YKAREQEVLYA 375
Y E L A
Sbjct: 412 YTTPMHERLVA 422
>gi|297602354|ref|NP_001052360.2| Os04g0278900 [Oryza sativa Japonica Group]
gi|255675275|dbj|BAF14274.2| Os04g0278900 [Oryza sativa Japonica Group]
Length = 368
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 257/352 (73%), Positives = 303/352 (86%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ NLDRFLAF EQHPIVLQIGGSN
Sbjct: 1 MMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIVLQIGGSN 60
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LDNLAKATELANAY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NV
Sbjct: 61 LDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNV 120
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKY
Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKY 180
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
EYY+ALLRDFPD+ FTLNGGI T+D+V A++R+GAH VMVGRAAY NPW LGHVD+ +Y
Sbjct: 181 EYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVY 240
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G P+ +RRQ++E YQ+YGD+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRKAD+
Sbjct: 241 GMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADS 300
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKA 367
+ CKT++SFLEET+ AIP+SVLD+PI + E FAD+ LLPP Y +
Sbjct: 301 TLRHCKTLESFLEETLDAIPNSVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 352
>gi|116309197|emb|CAH66291.1| OSIGBa0113C11.1 [Oryza sativa Indica Group]
Length = 368
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 257/352 (73%), Positives = 303/352 (86%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ NLDRFLAF EQHPIVLQIGGSN
Sbjct: 1 MMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIVLQIGGSN 60
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LDNLAKATELANAY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+AMS IAAN NV
Sbjct: 61 LDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNV 120
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKY
Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKY 180
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
EYY+ALLRDFPD+ FTLNGGI T+D+V A++R+GAH VMVGRAAY NPW LGHVD+ +Y
Sbjct: 181 EYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVY 240
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G P+ +RRQ++E YQ+YGD+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRKAD+
Sbjct: 241 GMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADS 300
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKA 367
+ CKT++SFLEET+ AIP+SVLD+PI + E FAD+ LLPP Y +
Sbjct: 301 TLRHCKTLESFLEETLDAIPNSVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 352
>gi|242072588|ref|XP_002446230.1| hypothetical protein SORBIDRAFT_06g006720 [Sorghum bicolor]
gi|241937413|gb|EES10558.1| hypothetical protein SORBIDRAFT_06g006720 [Sorghum bicolor]
Length = 368
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 249/350 (71%), Positives = 295/350 (84%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTDNHYRTLARLIS+HAWLYTEM+ AETI++Q+ NLDRFLAF EQHPIVLQIGGSN
Sbjct: 1 MMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDNLDRFLAFPEEQHPIVLQIGGSN 60
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
L+NLAKATELAN Y+YDEINLNCGCPS KVAGHGCFG LM +P+FVG+AMS IAAN +V
Sbjct: 61 LENLAKATELANDYSYDEINLNCGCPSGKVAGHGCFGARLMFEPEFVGDAMSTIAANCDV 120
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPAENR +PPLKY
Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKY 180
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
EYY+ALLRDFP + FT+NGGI V +V+A++R+GAH VMVGRAAY NPW LGHVD IY
Sbjct: 181 EYYFALLRDFPGIKFTVNGGITNVGQVSASIRQGAHGVMVGRAAYNNPWNMLGHVDGEIY 240
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + ++RRQ++E YQ YGD+I+ YG +RP+VR ++KPLL+ FHSEPGN L+KRKAD+
Sbjct: 241 GKQTRCISRRQILESYQAYGDSIIDQYGPSRPNVRQLVKPLLNLFHSEPGNSLWKRKADS 300
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPY 365
A + CKTVK+FLEET+ AIPDSVLD P+ P E FA++ LLPP Y
Sbjct: 301 ALRHCKTVKTFLEETLDAIPDSVLDKPVNREPCSDEGYFANIDSLLPPKY 350
>gi|357457959|ref|XP_003599260.1| tRNA-dihydrouridine synthase A [Medicago truncatula]
gi|355488308|gb|AES69511.1| tRNA-dihydrouridine synthase A [Medicago truncatula]
Length = 294
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/294 (81%), Positives = 267/294 (90%), Gaps = 1/294 (0%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
MV YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETI+YQ+GNLDRFLA+
Sbjct: 1 MVEDDYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVYQKGNLDRFLAY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P+QHPIVLQIGGSNL+NLAKAT+LA+AY YDEIN NCGCPSP+VAG GCFG LML+PK
Sbjct: 61 PPDQHPIVLQIGGSNLENLAKATKLADAYGYDEINFNCGCPSPRVAGRGCFGARLMLEPK 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
FV EA+SVIAANTNVPVSVKCRIGVDDHDSYN+LCDFIYKVSSLSP RHFIIHSRKALL
Sbjct: 121 FVAEAVSVIAANTNVPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPARHFIIHSRKALLK 180
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SPAENR+IPPLKYEY+Y LLRDFPDLTFT+NGGI +DE+NAAL+ GAH VM+GRAAY
Sbjct: 181 GLSPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITCIDEINAALKTGAHGVMLGRAAY 240
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMK 294
NPW+ LG+VD AIYG PS GLTRRQV+EKYQ+YGD++L YG RP VRD++K
Sbjct: 241 HNPWHILGNVDRAIYGVPSIGLTRRQVLEKYQVYGDSVLLQYG-FRPTVRDIVK 293
>gi|168068461|ref|XP_001786082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662169|gb|EDQ49105.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 402
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/342 (61%), Positives = 263/342 (76%), Gaps = 1/342 (0%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+ QYLPP FSVAPMMDWTDNHYRTLARL+SKHAWLYTEM+ A+TII+QQ NLD+FL F+
Sbjct: 17 IRHQYLPPRFSVAPMMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFN 76
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
QHPIVLQ+GGS+ + L KA+ LA+ Y YDEINLNCGCPS KVAGHGCFG SLML+
Sbjct: 77 EVQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGL 136
Query: 122 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V E M+ IA + PV+VKCRIGVDD DSY+ L F+ VSS SPT+HF++H+RKA+L
Sbjct: 137 VAECMAAIAEGSPGTPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILK 196
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SPA NRTIPPLKYEY YAL+RDFP+L FTLNGG+ +VN AL++G VM+GRAAY
Sbjct: 197 GLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAY 256
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
PW TLG+VD ++YG + LTRRQ++EKY Y DA L YG +P VR ++KPLL F
Sbjct: 257 NYPWATLGNVDNSVYGDSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRHLVKPLLGIF 316
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSP 342
H+E G G+++R D + + +TV + L+ET+ +PD VLDSP
Sbjct: 317 HAESGAGVWRRAVDNSLRNAETVGALLKETLCVLPDFVLDSP 358
>gi|302811002|ref|XP_002987191.1| hypothetical protein SELMODRAFT_125523 [Selaginella moellendorffii]
gi|300145088|gb|EFJ11767.1| hypothetical protein SELMODRAFT_125523 [Selaginella moellendorffii]
Length = 363
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 195/336 (58%), Positives = 255/336 (75%), Gaps = 6/336 (1%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P SVAPMM+WTDNH+R LAR++S+ +WLYTEM+ AETI++ + +L+R+L F QHPIV
Sbjct: 2 PQCSVAPMMEWTDNHFRALARILSRCSWLYTEMVVAETIVHHENDLERWLEFPAAQHPIV 61
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGSNL NL+KA +L +A+ YDEIN NCGCPS KVAGHGCFG LML P+ VGEAM
Sbjct: 62 LQLGGSNLANLSKAAKLVSAFGYDEINFNCGCPSSKVAGHGCFGARLMLSPRLVGEAMQA 121
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
I ++ PV+VKCRIGVDD DSY+QLC+F+ VSSLSPT+HFIIH+RKALL G+SPA+NR
Sbjct: 122 IGEESSAPVTVKCRIGVDDSDSYDQLCNFVSTVSSLSPTQHFIIHARKALLEGLSPAQNR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247
PPLKYEY AL+RDFPDL FTLNGGI TV++VN + KG + VM+GRAAY PW TL
Sbjct: 182 VAPPLKYEYVLALMRDFPDLQFTLNGGITTVEQVNYLISDKGVNGVMLGRAAYNTPWCTL 241
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D+ IYG P +TRRQV+ +Y+ Y ++++G YGNN+P +R ++KP+ + FH E G+
Sbjct: 242 ARADSCIYGMPERRITRRQVLREYEEYAESVIGKYGNNKPGIRVLVKPVANLFHGEKGSS 301
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPI 343
+++ D + LE+T+ +PDSVLD+P+
Sbjct: 302 RWRQAIDE-----HSFSELLEKTMAVLPDSVLDTPV 332
>gi|302789157|ref|XP_002976347.1| hypothetical protein SELMODRAFT_104800 [Selaginella moellendorffii]
gi|300155977|gb|EFJ22607.1| hypothetical protein SELMODRAFT_104800 [Selaginella moellendorffii]
Length = 358
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/322 (59%), Positives = 246/322 (76%), Gaps = 4/322 (1%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P SVAPMM+WTDNH+R LAR++S+ +WLYTEM+ AETI++ + +L+R+L F QHPIV
Sbjct: 2 PQCSVAPMMEWTDNHFRALARILSRCSWLYTEMVVAETIVHHENDLERWLEFPAAQHPIV 61
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGSNL NL+KA +L +A+ YDEIN NCGCPS KVAGHGCFG LML P+ VGEAM
Sbjct: 62 LQLGGSNLANLSKAAKLVSAFGYDEINFNCGCPSSKVAGHGCFGARLMLSPRLVGEAMQA 121
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
IA ++ PV+VKCRIGVDD DSY+QLC+F+ VSSLSPTRHFIIH+RKALL G+SPA+NR
Sbjct: 122 IAEESSAPVTVKCRIGVDDSDSYDQLCNFVSTVSSLSPTRHFIIHARKALLEGLSPAQNR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247
PPLKYEY AL+RDFPDL FTLNGGI TV++VN + KG + VM+GRAAY PW TL
Sbjct: 182 VAPPLKYEYVLALMRDFPDLQFTLNGGITTVEQVNYLITDKGVNGVMLGRAAYNTPWCTL 241
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D+ IYG P +TRRQV+ +Y+ Y ++++G YGNN+P +R ++KP+ + FH E G+
Sbjct: 242 ARADSCIYGMPERRITRRQVLREYEEYAESVIGKYGNNKPGIRVLVKPVANLFHGEKGSS 301
Query: 308 LFKRKADAAFQTCK---TVKSF 326
+++ D + K T+ SF
Sbjct: 302 RWRQAIDEHVRHAKASNTLSSF 323
>gi|227202714|dbj|BAH56830.1| AT3G63510 [Arabidopsis thaliana]
Length = 261
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/261 (73%), Positives = 231/261 (88%), Gaps = 1/261 (0%)
Query: 116 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 175
ML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCDFIYKVS+LSPTRHFI+HSR
Sbjct: 1 MLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSR 60
Query: 176 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235
KALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI +V +VNAAL++GAH VMV
Sbjct: 61 KALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMV 120
Query: 236 GRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 295
GRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD++LGT+GN RP+VRD++KP
Sbjct: 121 GRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKP 180
Query: 296 LLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPR-GREDLF 354
LL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD VLDSPI +P G ED+F
Sbjct: 181 LLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVF 240
Query: 355 ADVHDLLPPPYKAREQEVLYA 375
ADVH++LPPPY+A E+ +L A
Sbjct: 241 ADVHNVLPPPYEAGEEIILCA 261
>gi|167998448|ref|XP_001751930.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697028|gb|EDQ83365.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 373
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 258/362 (71%), Gaps = 8/362 (2%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YLPP FSVAPMMDWT+NH+RT+ARL+SKHAWLYTEM+ +TI YQQ NLD L F H
Sbjct: 10 YLPPRFSVAPMMDWTNNHFRTIARLMSKHAWLYTEMVVDDTINYQQDNLDMILKFPESHH 69
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQ+GG N + L +A++LA+ Y YDEINLNCGCPS V G FG +LML+P+ VG+
Sbjct: 70 PIVLQLGGCNPEKLFRASQLASLYGYDEINLNCGCPSDNVTGRS-FGAALMLEPELVGQC 128
Query: 126 MSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ IA + PVSVKCRIGVDD DSY+ L +FI VSS SPT+HFIIH+RKA+L G+SP
Sbjct: 129 VTAIAKGSPGTPVSVKCRIGVDDFDSYDFLHNFIRIVSSTSPTKHFIIHARKAVLKGLSP 188
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPLKY+Y +AL+RDFP+L FTLNGG+ + +VN AL +G VM+GR AY +PW
Sbjct: 189 DENRRIPPLKYDYVFALMRDFPNLKFTLNGGVVGIHQVNEALNRGVFGVMLGRTAYNSPW 248
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L +VD +YG + LTRRQ++EKY +YGDA L YG +P +R + +PL F+ E
Sbjct: 249 SVLANVDRVVYGDMTPVLTRRQILEKYVVYGDAELHRYGYKKPGIRQIAQPLSGLFYREK 308
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGRED--LFADVHDLLP 362
G GL++R D ++ +T+ + L +T+ IPDSVLD ++P+ E L D+ L+
Sbjct: 309 GVGLWRRALDEYIRSSQTLHALLRDTLRVIPDSVLD----DSPKLEESAVLLIDISFLVE 364
Query: 363 PP 364
P
Sbjct: 365 RP 366
>gi|224028635|gb|ACN33393.1| unknown [Zea mays]
Length = 296
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 213/238 (89%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
++LPP FSVAPMMDWTDNHYRTLARLIS+HAWLYTEM+ AETI++Q+ NLDRFLAF EQ
Sbjct: 52 KHLPPLFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDNLDRFLAFPEEQ 111
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HPIVLQIGGSNL+NLAKATELAN Y+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+
Sbjct: 112 HPIVLQIGGSNLENLAKATELANDYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGD 171
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
AMS IAAN +VPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SP
Sbjct: 172 AMSTIAANCDVPVSVKCRIGVDDRDSYEELCEFVDKVISKSPTRHFIIHARKALLSGLSP 231
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
AENR IPPLKYEYY+ALLRDFP++ FTLNGGI V +V+A++R+GAH VMVGRAAY
Sbjct: 232 AENRKIPPLKYEYYFALLRDFPEIKFTLNGGITNVSQVSASMRQGAHGVMVGRAAYNK 289
>gi|414587842|tpg|DAA38413.1| TPA: hypothetical protein ZEAMMB73_072134 [Zea mays]
Length = 263
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 170/260 (65%), Positives = 206/260 (79%)
Query: 116 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR 175
M DP+FVG+AMS IAAN +VPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+R
Sbjct: 1 MFDPEFVGDAMSTIAANCDVPVSVKCRIGVDDRDSYEELCEFVDKVISKSPTRHFIIHAR 60
Query: 176 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235
KALL+G+SPAENR IPPLKYEYY+ALLRDFP++ FTLNGGI V +V+A++R+GAH VMV
Sbjct: 61 KALLSGLSPAENRKIPPLKYEYYFALLRDFPEIKFTLNGGITNVSQVSASMRQGAHGVMV 120
Query: 236 GRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 295
GRAAY NPW LGHVD IYG + ++RRQ++E YQ YGD+I+ YG +RP+VR ++KP
Sbjct: 121 GRAAYNNPWNMLGHVDGEIYGKQTRYISRRQILENYQAYGDSIIDQYGPSRPNVRQLVKP 180
Query: 296 LLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFA 355
LL+ FHSEPGN L+KRKAD+A + CKTVK+FLEET+ AI DSVLD P+ P E+ FA
Sbjct: 181 LLNLFHSEPGNSLWKRKADSALRHCKTVKTFLEETLDAISDSVLDKPVNREPSSDEEYFA 240
Query: 356 DVHDLLPPPYKAREQEVLYA 375
V LLPP Y E L A
Sbjct: 241 SVDSLLPPKYTTPMHERLVA 260
>gi|39546256|emb|CAD39831.3| OSJNBa0079F16.4 [Oryza sativa Japonica Group]
Length = 1708
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/189 (83%), Positives = 172/189 (91%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
+LPP FSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ NLDRFLAF EQH
Sbjct: 60 HLPPLFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQH 119
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQIGGSNLDNLAKATELANAY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+A
Sbjct: 120 PIVLQIGGSNLDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDA 179
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAAN NVPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPA
Sbjct: 180 MSAIAANCNVPVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPA 239
Query: 186 ENRTIPPLK 194
ENR +PPLK
Sbjct: 240 ENRNVPPLK 248
>gi|307106508|gb|EFN54753.1| hypothetical protein CHLNCDRAFT_23819 [Chlorella variabilis]
Length = 374
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/332 (50%), Positives = 224/332 (67%), Gaps = 7/332 (2%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD +YR LARLIS+H WLYTEM+ +TII+ +D+FL F PEQHPIV Q+GGS+
Sbjct: 1 MDWTDLYYRQLARLISRHTWLYTEMVVDQTIIHTP-FIDKFLWFPPEQHPIVCQLGGSDP 59
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA+A + Y YDEINLNCGCPS +VAG GCFG ++ML P+ V + + +P
Sbjct: 60 TLLARAAAIVERYGYDEINLNCGCPSDRVAGAGCFGAAMMLRPQLVADCCKAMREAVLMP 119
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
++VKCR+GVD DSY QL +F+ VS S HF+IH+RK LL G++P +NRT+PPL+YE
Sbjct: 120 ITVKCRLGVDSFDSYPQLVNFVEVVSKGSGVSHFVIHARKCLLKGLNPHQNRTVPPLRYE 179
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
+ +AL RDFP L F+LNGG+ T++EV +AL G VMVGRAAY PW LG D AI+G
Sbjct: 180 WVWALKRDFPHLEFSLNGGVLTLEEVASALALGIMGVMVGRAAYNMPWDALGDADRAIFG 239
Query: 257 APSSGLT-RRQVVEKYQIYGDAILGTY-----GNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
A ++ T RRQV+ Y + D+++G + G+ P+VR ++KPLL FH EP ++
Sbjct: 240 AEANAATSRRQVLHDYAAWADSMIGHWRVEEDGHKSPNVRMLVKPLLGMFHGEPRAKKWR 299
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDSP 342
DAA +T +TV L+ T+ + LD+P
Sbjct: 300 AAVDAALKTAETVGEVLDATLPVLKPESLDAP 331
>gi|384248509|gb|EIE21993.1| Dus-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 433
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 240/379 (63%), Gaps = 19/379 (5%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD HYR +ARLISKH WLYTEM+ +TII+ DRFL F PEQ PI
Sbjct: 58 PQLLSVAPMMDWTDVHYRQMARLISKHTWLYTEMVVDQTIIHNPIT-DRFLWFPPEQRPI 116
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
V Q+GGS+ LA A + Y YDEINLNCGCPS +VAG GCFG SLML P V +
Sbjct: 117 VCQLGGSDPAKLAAAAAIVARYGYDEINLNCGCPSDRVAGAGCFGASLMLQPANVATCCA 176
Query: 128 VI-AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ A + V+VKCR+GVDD DSY LC+FI V S HFI+H+RK LLNG+SP E
Sbjct: 177 AMRQALGSAAVTVKCRLGVDDVDSYEALCNFIRVVHEGSGVSHFIMHARKCLLNGLSPHE 236
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-----HHVMVGRAAYQ 241
NRTIPPL++E+ +AL RDFP L F+LNGG+++ + AAL+ H VM+GRAAY
Sbjct: 237 NRTIPPLRHEWVWALNRDFPHLEFSLNGGLDSCHQAAAALQHSVDGASIHGVMIGRAAYN 296
Query: 242 NPWYTLGHVDTAIYGAPSSGLT-RRQVVEKYQIYGDAILGTY-----GNNRPHVRDVMKP 295
+PW L D A++GA ++ T RR+V+ KY Y DA++G + G+ P+VR V +P
Sbjct: 297 HPWACLADADIAVFGAETNAATSRREVLAKYVEYADAVVGRFGMKPDGSKTPNVRTVARP 356
Query: 296 LLHFFHSEPGNGLFKRKADAA-FQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLF 354
LL+ F EP ++R D A + TV +EE I +PD VLD+P + R +F
Sbjct: 357 LLNLFVGEPSGRKWRRMLDVALLKKPATVAEVVEEAIKCVPDHVLDAPPK---RQMPPVF 413
Query: 355 ADVHDLLPPPYKAREQEVL 373
+ PPP + + + V+
Sbjct: 414 SIGQ--FPPPNRLKSETVM 430
>gi|222628527|gb|EEE60659.1| hypothetical protein OsJ_14110 [Oryza sativa Japonica Group]
Length = 257
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 158/190 (83%), Positives = 173/190 (91%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
+LPP FSVAPMMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q+ NLDRFLAF EQH
Sbjct: 60 HLPPLFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQH 119
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PIVLQIGGSNLDNLAKATELANAY+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+A
Sbjct: 120 PIVLQIGGSNLDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDA 179
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
MS IAAN NVPVSVKCRIGVDD DSY +LC+F+ KV S SPTRHFIIH+RKALL+G+SPA
Sbjct: 180 MSAIAANCNVPVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPA 239
Query: 186 ENRTIPPLKY 195
ENR +PPLKY
Sbjct: 240 ENRNVPPLKY 249
>gi|255082067|ref|XP_002508252.1| predicted protein [Micromonas sp. RCC299]
gi|226523528|gb|ACO69510.1| predicted protein [Micromonas sp. RCC299]
Length = 401
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/362 (46%), Positives = 228/362 (62%), Gaps = 27/362 (7%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-QQGNLDRFLAFSPEQHP 66
P SVAPMMD+T H+R L RL+S+H WLYTEM +T+++ LDR+L F HP
Sbjct: 4 PQLLSVAPMMDYTTAHFRHLCRLLSRHTWLYTEMEVDQTLVHTDHPRLDRYLDFPTATHP 63
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
VLQ+GGS+ + +A+AT +A Y YDEINLNCGCPSPKVAG G FG +LML+P+ V + +
Sbjct: 64 SVLQLGGSDPETMARATAVAAPYGYDEINLNCGCPSPKVAGKGAFGAALMLEPELVRDVV 123
Query: 127 SVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS-SLSPTRH-----FIIHSRKALL 179
+ + N+ PV+VKCRIGVDDHDSY+ LC F+ V+ ++ PTR F IH+RKALL
Sbjct: 124 AAMRENSGGAPVTVKCRIGVDDHDSYDDLCRFVETVACAMVPTRTDGRPLFAIHARKALL 183
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR------KGAHHV 233
G+SPAENRT+PPL+YE+ YAL RDFP++ F +NGGI+T++E R G V
Sbjct: 184 AGLSPAENRTVPPLRYEWAYALARDFPEVAFVVNGGIDTLEEAAEVARGVGVPTGGGRLV 243
Query: 234 --MVGRAAYQNPWYTLGHVDTAIYGAPSSGLT-RRQVVEKYQIYGDAILGTYGNNR---- 286
M+GRA + +PW L D ++GA S+ T RR ++ +Y Y DA G +G +
Sbjct: 244 GTMIGRAVHADPWGVLSDADVRVFGAESNPRTSRRDLLNEYVKYCDATRGRFGTTKDGYS 303
Query: 287 -PHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK-----TVKSFLEETIVAIPDSVLD 340
P R +M PL + F EP +++R+ D A + TV LE T+ + D LD
Sbjct: 304 VPSTRHLMHPLQNLFLGEPNAKVWRRRVDEALKEDARNPDVTVGDILERTLGVLSDETLD 363
Query: 341 SP 342
+P
Sbjct: 364 AP 365
>gi|298708539|emb|CBJ49172.1| FAD binding / catalytic/ tRNA dihydrouridine synthase [Ectocarpus
siliculosus]
Length = 469
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 221/345 (64%), Gaps = 5/345 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE-QHPIVL 69
FS+APMM++TD H R L RL++ L+TEM+ + TII+ +L RFL ++ E +HP+VL
Sbjct: 82 FSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVL 141
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
QIGGS+ ++ +A LA Y YD INLNCGCPS KVAG G FG +LM P V + +
Sbjct: 142 QIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAM 201
Query: 130 --AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
A + P++VKCRIGVD+ DSY QL F+ +VS + HFI+H+RKA+L G+SPA+N
Sbjct: 202 KDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQN 261
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY++ Y L++DFPD+ FTLNGG+NT +E + L +GAH VMVGR+ NPWY
Sbjct: 262 RNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWY-W 320
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHV-RDVMKPLLHFFHSEPGN 306
D+ ++GA GLTRR+V+E+Y YG+ G R + KP+ H FH E G
Sbjct: 321 SQADSMLFGAKDPGLTRREVLERYAEYGERQEKACGEKWLACRRRLAKPIWHMFHGEKGG 380
Query: 307 GLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGRE 351
F+ + + K+ ++++++A+P +D E R R+
Sbjct: 381 KKFRVALEGMLREDKSFGEIVQKSLLAMPQDQVDWLPGENWRARQ 425
>gi|308807222|ref|XP_003080922.1| nitrogen regulation family protein (ISS) [Ostreococcus tauri]
gi|116059383|emb|CAL55090.1| nitrogen regulation family protein (ISS) [Ostreococcus tauri]
Length = 490
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/354 (44%), Positives = 220/354 (62%), Gaps = 22/354 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETI---IYQQGNLDRFLAFSPEQHPI 67
SVAPMM++T H+R + RL+S WL+TEM +T+ + + +DRFL + E
Sbjct: 102 LSVAPMMEYTTAHFRVMCRLMSAKTWLWTEMEVDQTLTHAVLEGTRVDRFLDYPVETAAT 161
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
VLQ+GGS+ + L +AT +A Y Y+EINLN GCPSPKVAG GCFG +LM +P+ V E +
Sbjct: 162 VLQLGGSDPEILGRATAIAAPYGYEEINLNSGCPSPKVAGKGCFGAALMTEPRLVAECLQ 221
Query: 128 VIAAN--TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ N + PVS+KCRIGVD+ DSY+ LC+++ + S TR F +H+RKALLNG+SPA
Sbjct: 222 AMNENAPSGTPVSIKCRIGVDECDSYDALCEYVDTIVRASATRRFYVHARKALLNGLSPA 281
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH------HVMVGRAA 239
ENR++PPLK+E+ YAL RDFP+ F LNGG+ T+ +V A+ +G VM+GR A
Sbjct: 282 ENRSVPPLKHEWAYALARDFPECEFHLNGGLKTLKDVENAIHRGPEGGGPIAGVMIGRQA 341
Query: 240 YQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNR-----PHVRDVM 293
+ +PW L DT I+G ++ +RR +EKY Y D +G YG + P VR +M
Sbjct: 342 HADPWGLLSAADTTIFGESTNPCASRRDFLEKYVEYADDTIGRYGTAKDGYRIPSVRHMM 401
Query: 294 KPLLHFFHSEPGNGLFKRKADAAFQTCK-----TVKSFLEETIVAIPDSVLDSP 342
P+ + FH N +++R D Q TV+S LE T+ I D LD+P
Sbjct: 402 HPIQNLFHGCANNKMWRRLVDEELQKRSKKPDTTVRSILEATLGVIEDEDLDAP 455
>gi|145350035|ref|XP_001419429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579660|gb|ABO97722.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 355
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 157/354 (44%), Positives = 221/354 (62%), Gaps = 22/354 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGN---LDRFLAFSPEQHPI 67
SVAPMM++T H+R +ARL+S+ L+TEM +T+ + + +D+FL +
Sbjct: 2 LSVAPMMEYTTPHFRVMARLMSRRVMLWTEMEVDQTVTHSARDGDRVDKFLDYPAATFGT 61
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
VLQ+GGS + L +AT +A Y YDEINLN GCPSPKVAG GCFG +LM +P V E ++
Sbjct: 62 VLQLGGSTPEYLGRATAIAAPYGYDEINLNSGCPSPKVAGKGCFGAALMAEPGLVAECLA 121
Query: 128 VIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+A N PVSVKCRIGVDD DSY+ LCD++ ++ + S TR F +H+RKALL G+SPA
Sbjct: 122 AMAENAPEGTPVSVKCRIGVDDVDSYDDLCDYVERIVAGSSTRRFYVHARKALLAGLSPA 181
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAA 239
ENRT+PPLK+E+ YAL RDFP+ F LNGG+ T+++V L++G M+GR A
Sbjct: 182 ENRTVPPLKHEWAYALARDFPECEFHLNGGLKTLNDVKNVLKRGPEDGGPIVGAMIGRQA 241
Query: 240 YQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNR-----PHVRDVM 293
+ +PW L DT ++G S+ +RR + KY +Y D +G YG + P VR +M
Sbjct: 242 HADPWGLLSAADTTLFGEASNPSASRRDFLNKYAVYADETIGRYGTAKDGYRIPSVRHMM 301
Query: 294 KPLLHFFHSEPGNGLFKRKADAAFQTCK-----TVKSFLEETIVAIPDSVLDSP 342
P+ + FH N ++R + Q TV+S L+ T++AI D LD+P
Sbjct: 302 HPIQNLFHGCANNKAWRRLVEEDLQKRSKHPDTTVRSVLDATLIAISDEDLDAP 355
>gi|412993714|emb|CCO14225.1| tRNA-dihydrouridine synthase A [Bathycoccus prasinos]
Length = 571
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 215/355 (60%), Gaps = 23/355 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-DRFLAFSPEQHPIVL 69
S+APMM++T NH+R L RL+SK WL+TEM T+ + L ++++ F+ QHP+V+
Sbjct: 166 LSIAPMMEYTHNHFRYLCRLLSKRVWLWTEMEVDMTLKHVPVELRNKYVDFTLNQHPLVM 225
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
Q+GGS+ D L + LA + YDEINLNCGCPS KVAG GCFG +LM DP V E + +
Sbjct: 226 QLGGSDADALGFSASLAKPHGYDEINLNCGCPSEKVAGKGCFGATLMRDPDLVAECCAAM 285
Query: 130 AANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
A N + +P+SVKCRIGVD +DSY++L F+ ++S SP R F +H RKALLNGISP++NR
Sbjct: 286 AKNADGIPISVKCRIGVDGNDSYDELYRFVETIASKSPVRRFHVHCRKALLNGISPSQNR 345
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---------KGAHHVMVGRAA 239
+IPPL++E+ YAL RDFP+ F LNGG+ T++EV LR VM+GR A
Sbjct: 346 SIPPLRHEWVYALARDFPECEFFLNGGVKTLEEVKTQLRCQPTDKATANTIKGVMIGRQA 405
Query: 240 YQNPWYTLGHVDTAIYGAPSSGL-TRRQVVEKYQIYGDAILGTYGNNR-----PHVRDVM 293
+ +PW L D ++G + +RR ++ KY Y DA G G + P R M
Sbjct: 406 HADPWGLLSRADVELFGESENPCKSRRDLLAKYAKYCDATQGKNGTMKDGSPVPAPRHFM 465
Query: 294 KPLLHFFHSEPGNGLFKRKADAAFQTCK------TVKSFLEETIVAIPDSVLDSP 342
+ + F ++KR D Q + TV +E T+ IPD VLD+P
Sbjct: 466 HSIQNIFAGCTNAKIWKRLVDDQLQGSRKKEPNLTVTEIMERTLGCIPDEVLDAP 520
>gi|303279296|ref|XP_003058941.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460101|gb|EEH57396.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 376
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 226/374 (60%), Gaps = 40/374 (10%)
Query: 7 LPP-WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-QQGNLDRFLAFSPEQ 64
LPP SVAPMMD+T H+R + R++S+ WLYTEM +T+ + LDR+L F +
Sbjct: 3 LPPQLLSVAPMMDYTTAHFRAMCRMLSRKTWLYTEMEVDQTLTHVDHPRLDRYLDFPLQT 62
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP VLQ+GGS+ ++L +A +A Y YDE+NLNCGCPSPKVAG G FG +LML+P+ V +
Sbjct: 63 HPSVLQLGGSDPESLGRAAAIAAPYAYDELNLNCGCPSPKVAGKGNFGAALMLEPELVAD 122
Query: 125 AMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH-------FIIHSRK 176
++ +AAN+ PV+VKCRIGVDD DSY+ LC F+ V++ P R F IH+RK
Sbjct: 123 CVAAMAANSGGAPVTVKCRIGVDDVDSYDALCAFVETVAARMPPRRGEDARPLFAIHARK 182
Query: 177 ALLN-----------GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAA 225
ALL G+SPAENRT+PPL++E+ +AL RDFPD+ F +NGGINT++E A
Sbjct: 183 ALLRRVLYTGSHTTAGLSPAENRTVPPLRHEWVHALARDFPDVAFAINGGINTLEEAVAI 242
Query: 226 LRKGAHHV--------MVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGD 276
R V M+GR A+ +PW L DTA++G S ++RR ++E Y Y D
Sbjct: 243 ARGEGTPVGGGRLVGTMIGRRAHADPWGLLARADTAVFGEASDPCVSRRALLETYAAYAD 302
Query: 277 AILGTYGNNR-----PHVRDVMKPLLHFFHSEPGNGLFKRKADA-----AFQTCKTVKSF 326
A YG + P +R +M PL + F EP ++R+ D A + TV
Sbjct: 303 ATWARYGTTKDGYAVPSIRHLMHPLQNLFLGEPNAKRWRREVDEVLKRDARRATTTVTGV 362
Query: 327 LEETIVAIPDSVLD 340
LEET+ + D LD
Sbjct: 363 LEETLRVLSDETLD 376
>gi|422292933|gb|EKU20234.1| hypothetical protein NGA_0331800 [Nannochloropsis gaditana CCMP526]
Length = 437
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 219/338 (64%), Gaps = 11/338 (3%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQ 70
S+APMM++TD H R L RL+SK LYTEM+ A T+ + + + DRFL F SP +HP+VLQ
Sbjct: 90 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQ 149
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+A+ LA+ Y Y+ +NLNCGCPS +V+G GCFG +LM +P+ V E + ++
Sbjct: 150 LGGSDPEQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMS 209
Query: 131 ANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ +PV+VKCRIGVDD DSY QL F+ VS SP RHF++H+RKA+L G+SP +NR
Sbjct: 210 EGSQGKIPVTVKCRIGVDDDDSYEQLARFVETVSGASPVRHFLVHARKAILGGLSPDQNR 269
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+PPLKY + Y L R+FP L FTLNGG+ + ++V LR+G H VM+GRA P+Y
Sbjct: 270 KVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFY-WS 328
Query: 249 HVDTAIYGAPSS--GLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVM-KPLLHFFHSEPG 305
VD ++G+ GLTRR+V+++Y Y G P +R ++ KP+ + F EP
Sbjct: 329 DVDARVFGSADGNPGLTRREVLDRYGAYAQEEEARGG---PRMRRLLIKPVHNLFAGEPM 385
Query: 306 NGLFKRKADAA-FQTCKTVKSFLEETIVAIPDSVLDSP 342
F+ D A + V+ LE +P ++L+ P
Sbjct: 386 GKRFRATLDQALLEPSLDVRQVLERATAVMPAALLEVP 423
>gi|449017087|dbj|BAM80489.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 480
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 161/358 (44%), Positives = 216/358 (60%), Gaps = 28/358 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMD TDNH+RTL RL+SKHA LYTEM+ T++Y N D +LAF P Q PIVLQ
Sbjct: 80 FSVAPMMDVTDNHFRTLCRLLSKHALLYTEMVVDSTLVYNASNADHWLAFHPAQQPIVLQ 139
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + A E+A Y Y IN+NCGCPS +VAG GCFG +LM D V IA
Sbjct: 140 LGGSDPQKMRAAAEIAAPYGYSAININCGCPSDRVAGRGCFGAALMKDAPGVAALCRAIA 199
Query: 131 --ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ P++VKCR+GVDD D+Y+ DF+ VS +P RHFIIH+RKA L G+SPAENR
Sbjct: 200 EVVPASTPITVKCRLGVDDLDTYSFARDFVQVVSENAPVRHFIIHARKAYLKGLSPAENR 259
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTL 247
T+PPL+Y+ AL RDFP L F++NGGI T+ +V L + + VMVGRA +PW L
Sbjct: 260 TVPPLRYDRVLALARDFPHLHFSINGGIRTMPQVRHFLDTEHLYGVMVGRAVMNHPWEAL 319
Query: 248 GHVDTAIYGAPSSG-LTRRQVVEKY------QIYGDAILGTYGNNR----------PHVR 290
VD I+G S TRR V++ Y Q++ +I G + R P +
Sbjct: 320 AGVDAVIFGDDSCAQRTRRDVLQAYGAYVDKQLHAASIYGQETDERESCSRGSQWTPSLH 379
Query: 291 DVMKPLLHFFHSEPGNGLFKRKADAA------FQTCKTVKS-FLEETIV-AIPDSVLD 340
++KP+L+ F P + ++++ A + +VKS F ET + + +S LD
Sbjct: 380 VLLKPILNLFWGVPRSKEWRKRVQQATDEQTRIRRNSSVKSNFSWETFLPQVAESTLD 437
>gi|452820247|gb|EME27292.1| tRNA-dihydrouridine synthase A [Galdieria sulphuraria]
Length = 406
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 210/352 (59%), Gaps = 11/352 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVL 69
FSVAPMMD TD H+R LAR+ISKHA LYTEM+ II+ G R L F Q P+ L
Sbjct: 57 FSVAPMMDVTDKHFRNLARMISKHAVLYTEMIVDNVIIHSDGEKRRRILDFDSAQRPLCL 116
Query: 70 QIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
QIGGS+ ++KA +A+ Y YD+ NLNCGCPS KV+ GCFG LM P+ V S
Sbjct: 117 QIGGSDPSKVSKAVHIAHKYFRYDDYNLNCGCPSDKVSSQGCFGAILMKQPEKVARITSR 176
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+A P++VKCRIGVD HDSY L +FI+ VS+ HFIIH+R A L+G+SP ENR
Sbjct: 177 VAETVGKPMTVKCRIGVDHHDSYEFLSNFIHVVSTSGHVNHFIIHARSAWLSGLSPKENR 236
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+ PP+KYEY Y L +DFP L FTLNG ++T+ +V L KG VM+GRA + PW +L
Sbjct: 237 SKPPIKYEYVYRLTKDFPHLKFTLNGQVSTLSDVVMHLSKGVEGVMLGRAVMERPWNSLR 296
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD IY S+ + R+ VV+KY + I G+ ++ ++KP+L F E +
Sbjct: 297 LVDCIIYNDFSTLIRRKYVVQKYL---EHIAQYEGHASRYL--LVKPVLQLFAGEMNCRI 351
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDL-FADVHD 359
F+ + Q + + + +P SVL+ +E+ E L F D+ +
Sbjct: 352 FRARCGECLQQGHSASDSIRYALNILPQSVLE---QESWNSEELLAFKDIQE 400
>gi|325182221|emb|CCA16675.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 563
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/343 (42%), Positives = 216/343 (62%), Gaps = 21/343 (6%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD HYR L RLI+ H LYTEML +T++YQ+ NL FL ++ P+ +Q+GG+++
Sbjct: 218 MDWTDRHYRYLMRLITHHTQLYTEMLVDQTLLYQKDNLHYFLGHDDDESPLAVQLGGNSI 277
Query: 77 DNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS-VIAANTN 134
D LA A +L Y ++EINLNCGCPSPKV+ CFG LML P+ V + + +I AN++
Sbjct: 278 DTLAAAAQLCREYGGFNEINLNCGCPSPKVSKQ-CFGAQLMLQPERVRDICAGMIGANSS 336
Query: 135 V--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
+ ++VKCRIGVDD DSY +L FI VS+ S HFI+H+RK L+G++P ENRTIP
Sbjct: 337 MDPEITVKCRIGVDDCDSYEELKRFISVVSA-SGVEHFIVHARKCWLSGLNPHENRTIPT 395
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD 251
L Y++ Y L DFP+L FTLNGG+ +++E + L+ +M+GRAAY+ PW + D
Sbjct: 396 LNYDFVYQLKSDFPNLAFTLNGGVASIEEAHRLLQTSNMDGIMIGRAAYKYPW-NFRNAD 454
Query: 252 TAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRPH--------VRDVMKPLLHFFHS 302
+YGA + L+RR+++E+Y Y + + +G+++ ++KPLL F
Sbjct: 455 RLLYGAKRNPNLSRREIIERYIDYAEDLQERWGSDKILDNSKFAMPTTTLVKPLLSLFSG 514
Query: 303 EPGNGLFKRKADAAFQTCKT----VKSFLEETIVAIPDSVLDS 341
E G +FKRK + K ++ +E + +PDS+LD+
Sbjct: 515 EHGGKVFKRKIGEFWCINKEDRPGLREIVESAVRLLPDSMLDA 557
>gi|301092884|ref|XP_002997293.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262111428|gb|EEY69480.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 379
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 216/366 (59%), Gaps = 30/366 (8%)
Query: 7 LPP--WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
LPP SVAPMMDWTD HYR + R+I+K L+TEM+ +T++YQ+ NLD FL P +
Sbjct: 4 LPPVARLSVAPMMDWTDRHYRFMMRMITKKTLLFTEMVVDQTLLYQRKNLDYFLGHDPAE 63
Query: 65 HPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
P+ LQ+GG+++++L A L+ +Y + EINLN GCPS V+ CFG LML+P+ V
Sbjct: 64 APLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSR-CFGARLMLEPERVR 122
Query: 124 EAM-----SVIAANTNVP------VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172
+ SV A+ P V+VKCRIGVDD DSY++L ++ V+S + RH I+
Sbjct: 123 DICDSMRHSVALASEGNPDHPTAEVTVKCRIGVDDCDSYDELHHYVAAVAS-AGVRHIIV 181
Query: 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231
H+RK LL G+S +NRTIPPL+YE Y L +DFP+L+FTLNGG+ ++ L
Sbjct: 182 HARKCLLKGLSTKDNRTIPPLRYEVVYRLKQDFPELSFTLNGGVKSIQHARELLNTTNVD 241
Query: 232 HVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRP--- 287
+M+GRAAY PW D I+ A + L+RR+++E+Y Y + + +G+ P
Sbjct: 242 GIMIGRAAYNTPW-NFRDADRLIFNAERNPNLSRREIIERYLEYAEDLQAKWGSTEPLSD 300
Query: 288 -----HVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK---TVKSFLEETIVAIPDSVL 339
+MKPLL F+ E G FKR+ A + ++ +E + +P V+
Sbjct: 301 SPYTMATSALMKPLLSLFNGEFGGKAFKREISAQWSKKGPRPELREMIESAMKVLPSEVV 360
Query: 340 DSPIEE 345
D+ +E+
Sbjct: 361 DARVED 366
>gi|348671867|gb|EGZ11687.1| hypothetical protein PHYSODRAFT_336192 [Phytophthora sojae]
Length = 379
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 214/366 (58%), Gaps = 30/366 (8%)
Query: 7 LPP--WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
LPP SVAPMMDWTD HYR + R+I+K L+TEM+ +T+++Q+ NLD FL P +
Sbjct: 4 LPPVARLSVAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPIE 63
Query: 65 HPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
P+ LQ+GG+++++L A L+ +Y + EINLN GCPS V+ CFG LML+P+ V
Sbjct: 64 APLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSR-CFGARLMLEPERVR 122
Query: 124 EAMS------VIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172
+ + +AA N V+VKCRIGVDD DSY +L ++ V+ + RH I+
Sbjct: 123 DICASMRRNVALAAEENPDRPAAEVTVKCRIGVDDCDSYEELHHYVSSVTE-AGVRHIIV 181
Query: 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAH 231
H+RK LL G+S +NRTIPPL+Y+ Y L +DFP+L+FTLNGG+ ++ L
Sbjct: 182 HARKCLLKGLSTKDNRTIPPLRYDVVYRLKQDFPELSFTLNGGVQSIQHARELLDTTNVD 241
Query: 232 HVMVGRAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRP--- 287
VM+GRAAY PW D I+ A + L+RR+++ +Y Y + + +G+ P
Sbjct: 242 GVMIGRAAYNTPW-NFRDADRLIFNAERNPNLSRREIIARYLDYAEGLQAKWGSTEPLSD 300
Query: 288 -----HVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCK---TVKSFLEETIVAIPDSVL 339
+MKPLL F+ E G FKR+ A + ++ +E + +PD VL
Sbjct: 301 SPYTMATSALMKPLLSLFNGEFGGKAFKREISAQWAKKGPRPELREMIESAMKVLPDEVL 360
Query: 340 DSPIEE 345
D+ +E+
Sbjct: 361 DARVED 366
>gi|187923745|ref|YP_001895387.1| tRNA-dihydrouridine synthase A [Burkholderia phytofirmans PsJN]
gi|187714939|gb|ACD16163.1| TIM-barrel protein, yjbN family [Burkholderia phytofirmans PsJN]
Length = 333
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/277 (49%), Positives = 179/277 (64%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+PE+ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLH--GDVPRHLAFTPEEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIAE-AGCNVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKYEY Y L RDFP L +NGGI T+DEV A L + VM+GR AY NP Y L
Sbjct: 185 REIPPLKYEYAYQLKRDFPQLEIIINGGIKTLDEVEAHL-EHVDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTY 282
VD YGA + LTR QV K Y + + GTY
Sbjct: 243 ADVDARFYGAAQTPLTREQVEAKLIEYCAAEMVRGTY 279
>gi|407769501|ref|ZP_11116876.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287423|gb|EKF12904.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 331
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 181/301 (60%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R IS+HA LYTEM+ II+ G DR L ++ +HP+ LQ
Sbjct: 7 ISVAPMMDWTDRHDRYFLRQISRHALLYTEMVTTGAIIH--GGADRHLRYNTAEHPVALQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D+LA+A E+AN Y YDEINLNCGCPS +V +G FG LM P V + +
Sbjct: 65 LGGSNPDDLARACEIANDYAYDEINLNCGCPSDRVQ-NGAFGACLMATPDVVANCVKAMI 123
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +N V+VK RIG+DD + Y L F+ V+ + R FI+H+RKA LNG+SP ENR +
Sbjct: 124 ATSNASVTVKNRIGIDDQEDYPSLKRFVETVAD-AGCRTFIVHARKAWLNGLSPKENREV 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKYE Y L ++ P+L +NGGI T+DE L++ VM+GR AYQNP Y L V
Sbjct: 183 PPLKYELVYQLKQELPELEILINGGIKTLDETEEHLKQ-VDGVMIGREAYQNP-YVLSDV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + L+R QV E Y D L + H V + +L F G ++
Sbjct: 241 DRRFYGDDTKPLSRHQVAEAMLPYIDEHLKSNNGTLGH---VTRHMLGLFQQMRGAKQWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|407790626|ref|ZP_11137719.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
gi|407203749|gb|EKE73734.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
Length = 323
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 190/303 (62%), Gaps = 15/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD HYR AR +S+HA LYTEM+ II+ +G+ +LAFS +HP+ LQ
Sbjct: 6 FSVAPMLDWTDRHYRVFARQLSRHALLYTEMVTTGAIIHGKGD---YLAFSEAEHPVALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLAHCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMAEPTLVADCVKAMK 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ +S + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DAVSIPVTVKSRIGIDDMDSYPFLVDFVSTISE-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y L +DFP+L +NGGI T+DE+ L AH VMVGR AYQNP Y L
Sbjct: 181 PPLDYPRVYQLKKDFPNLHIGINGGIKTLDEMQGHL---AHVDSVMVGREAYQNP-YLLA 236
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD A+YG S+ ++RR VVE Y +A L G H+ + +L F+ + G
Sbjct: 237 EVDAALYGVDSAMVSRRAVVEAMFPYIEAELAA-GARLNHIS---RHMLGLFNGQTGGRR 292
Query: 309 FKR 311
++R
Sbjct: 293 WRR 295
>gi|398338004|ref|ZP_10522709.1| tRNA-dihydrouridine synthase A [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 339
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 200/329 (60%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RL+SKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLVSKHTFLYTEMIHTGAILH--GDRHRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + LA++++++ Y Y EINLN GCPS +V G FG LM P+ V + ++ + A
Sbjct: 73 GGDDAKALAQSSKISEEYGYSEINLNVGCPSDRVR-EGNFGACLMETPEKVADLVAAMDA 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+PV+VKCRIG+ +++ LC F+ V + R I+H+R A+L G+SPA+NR IP
Sbjct: 132 AVKIPVTVKCRIGIPGKETFEDLCRFVECVRQ-AGVRRLIVHARIAILGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y +L R+FPDL +NGGI T++E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVESLKREFPDLLIEINGGIRTIEEIRERL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G S L+RR++V + + Y + IL N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFGDDSPVLSRREIVLRMKEYVEEILLKETNGKPH--HALRHVLGLFHGERGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + L + + IPD LD
Sbjct: 307 ILTEGMYSDYS-NDLLLKAMREIPDDSLD 334
>gi|403049865|ref|ZP_10904349.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86D]
Length = 323
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 180/268 (67%), Gaps = 6/268 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMM +TD H R L RLISK +LYTEM+ I+Y G L F+ E+HP+ +Q+
Sbjct: 10 SIAPMMQYTDMHDRYLLRLISKKVFLYTEMVTTGAILY--GKCFHQLEFNKEEHPVAVQL 67
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS++D+L K++++A Y YDEINLN GCPS +V G FG LML+P V E +S +
Sbjct: 68 GGSDIDDLVKSSKIAEDYGYDEINLNVGCPSDRVQK-GRFGACLMLEPNHVAECLSAMQR 126
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N +PVS+KCR+GVDDH+ Y+ L +F+ V + S HFIIH+R +L G+SP +NR IP
Sbjct: 127 NVALPVSIKCRLGVDDHEDYDFLYNFVQIVKN-SGINHFIIHARNGILKGLSPRQNRHIP 185
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PLKYEY Y L RDFP+L +NGGI ++++ + L+K VM+GRAAY+NP + + +D
Sbjct: 186 PLKYEYVYQLKRDFPELDIIINGGIKSIEDCHEHLKK-VDGVMIGRAAYENP-FLIKDID 243
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAIL 279
+ IY P +++ ++ KY Y + +L
Sbjct: 244 SQIYNEPEDTKSKKIILNKYLDYVEDML 271
>gi|307729510|ref|YP_003906734.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1003]
gi|307584045|gb|ADN57443.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1003]
Length = 333
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 178/277 (64%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ VPV+VK RIGVD + Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVGVPVTVKHRIGVDAVEDYSFVRDFVGTIAE-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV A L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIVINGGIKTLDEVEAHLQH-VDGVMLGREAYHNP-YLL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ + LTR QV K Y + GTY
Sbjct: 243 ADVDARFYGSAEAPLTREQVEAKLIEYCGVEMARGTY 279
>gi|104294976|gb|ABF71992.1| hypothetical protein MA4_111B14.10 [Musa acuminata]
Length = 220
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/143 (82%), Positives = 130/143 (90%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTDNHYRTLARLISKHAWLYTEM+ AETI++Q NLDRFLAFSP QHPIVLQI
Sbjct: 7 SIAPMMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQSENLDRFLAFSPIQHPIVLQI 66
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGSNL NLAKA ELAN+Y+YDEINLNCGCPS KVAGHGCFG LM DP+FVG+AMS IA+
Sbjct: 67 GGSNLTNLAKAAELANSYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAS 126
Query: 132 NTNVPVSVKCRIGVDDHDSYNQL 154
N +VPVSVKCRIGVDD DSY++L
Sbjct: 127 NCDVPVSVKCRIGVDDRDSYDEL 149
>gi|119776187|ref|YP_928927.1| tRNA-dihydrouridine synthase A [Shewanella amazonensis SB2B]
gi|119768687|gb|ABM01258.1| TIM-barrel protein, yjbN family [Shewanella amazonensis SB2B]
Length = 326
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 191/301 (63%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD HYR ARL+SK A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 9 FSVAPMLDWTDRHYRYFARLMSKEALLYTEMVTTGAILHGKGD---YLAYNQEEHPLALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA +LA A YDE+N+N GCPS +V +G FG LM +PK V E + +
Sbjct: 66 LGGSDPKDLATCAKLAEARGYDEVNINVGCPSDRVQ-NGRFGACLMAEPKLVAECVDAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D+ DSY L DF+ VS+ + FIIH+RKA L G+SP ENR I
Sbjct: 125 QQVSVPVTVKTRIGIDEQDSYGFLTDFVETVSA-AGCDTFIIHARKAWLQGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L+ ++NGG+ ++++ L + VMVGR AYQNP Y L V
Sbjct: 184 PPLDYERVYQLKRDYPQLSISINGGVTSIEQAKTHLAQ-LDGVMVGREAYQNP-YILASV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
DT + G P+ +R +V+ K Y +G + + + + + ++ + PG+ ++
Sbjct: 242 DTELCGKPAVVSSREEVIGKLLPY----IGKHLADGGRLNHISRHIIGLYQGLPGSRAWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|229594322|ref|XP_001029812.3| TIM-barrel protein, yjbN family [Tetrahymena thermophila]
gi|225566933|gb|EAR82149.3| TIM-barrel protein, yjbN family [Tetrahymena thermophila SB210]
Length = 466
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 200/326 (61%), Gaps = 12/326 (3%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
+VAPM+D TD H+R RL+++++ LYTEM+ + + + FL F P QHP+V+Q+
Sbjct: 91 AVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFDPVQHPVVIQL 150
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG++ DNLAKA ++ YDE+NLN GCPS +V G FG LM +P+ V E M +
Sbjct: 151 GGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQS-GKFGACLMKEPELVAEIMRKMKE 209
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
++PV+VKCR+GVD+ DSY DFI VS +HF++H+RKA L G++PA+NR +P
Sbjct: 210 ACSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGLNPAQNRNVP 269
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVGRAAYQNPWYTLGH 249
PLKY+Y L ++FP L F++NGG T D+++ L++ G H M+GRAAY+ PW
Sbjct: 270 PLKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAYETPW-LFSD 328
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNG 307
+D +G + G +RR++++ + YG ++ +P + + KP+++ F E +
Sbjct: 329 MDRRYFGKQNPGFSRREILQIWGQYGKLVI----QQQPAISIPTLNKPIINLFAGEKHSA 384
Query: 308 LFKR--KADAAFQTCKTVKSFLEETI 331
++ A F + + F+++TI
Sbjct: 385 KYRHFISDRANFVKFENYEVFMQKTI 410
>gi|15806701|ref|NP_295421.1| tRNA-dihydrouridine synthase A [Deinococcus radiodurans R1]
gi|6459466|gb|AAF11254.1|AE002011_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 333
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 191/341 (56%), Gaps = 10/341 (2%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M A P SVAPMMDWTD H R R +++ LYTEM+ I++ G+ R L F
Sbjct: 1 MTAAPRPPHTLSVAPMMDWTDRHCRMFHRTLTRRTLLYTEMVTTGAILH--GDQGRHLDF 58
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
S +HP+ LQ+GGS+ LA+ LA + YDE+NLNCGCPS +V+ G FG LM P
Sbjct: 59 SAPEHPLALQLGGSDAAALAECARLAEDWGYDEVNLNCGCPSDRVSS-GSFGACLMGTPD 117
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V A+ + A T +PV+VK RIG+DD DSY L F+ V++ + FI+H+RKA L+
Sbjct: 118 VVARAVEAMRAATRLPVTVKHRIGIDDLDSYEHLTGFVRTVAA-AGCEQFIVHARKAWLS 176
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP ENR IPPL+YE L DFP LT LNGG+ ++ E AL A VM+GRAAY
Sbjct: 177 GLSPKENREIPPLRYEVVQQLKADFPQLTVVLNGGVKSLTEAQQAL-AWADGVMIGRAAY 235
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
Q P Y L D ++G + ++RR+ +E Y Y + +P R +MK L F
Sbjct: 236 QEP-YLLAAADRDVFGEDAQAVSRREAIEAYLPY---VAAQVEAGQPLNR-MMKHTLGLF 290
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
+PG +KR + + +PD VLD+
Sbjct: 291 AGQPGARHWKRTLSEQGHKPGAGLDVVRAALAGVPDDVLDA 331
>gi|410666192|ref|YP_006918563.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
gi|409028549|gb|AFV00834.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
Length = 325
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 187/306 (61%), Gaps = 14/306 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P FS+APMM+W+D H R RL+SK A+LYTEM+ +I+ G+ +RFL ++PE+HP+
Sbjct: 5 PRAFSLAPMMEWSDRHCRYFWRLLSKQAFLYTEMVTTGALIH--GDRERFLNYNPEEHPV 62
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN LA ++A ++ YDE+NLNCGCPS +V +G G LM P+ V + +
Sbjct: 63 ALQLGGSNPQELAACAQMAESWGYDEVNLNCGCPSDRVQ-NGMIGACLMAQPQLVADCIK 121
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +PV+VK RIG+DD D L DF+ +++ FI+H+RKA L G+SP EN
Sbjct: 122 AMQDAVQIPVTVKHRIGIDDMDDDQGLLDFVAPIAATGCVT-FIVHARKAWLKGLSPKEN 180
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL Y+ + L ++FPDL +NGG+ T+ + A L AH VMVGR AY NPW
Sbjct: 181 REIPPLNYDRVHKLKQEFPDLEIIINGGLKTLADCQAQL---AHVDGVMVGREAYHNPWL 237
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD AIYG P + R V+++ Y D L + G H + + LL FH +PG
Sbjct: 238 -LSEVDAAIYGQPPVTIDRLAVIDQMMGYIDKQL-SAGMRLHH---ITRHLLGLFHGQPG 292
Query: 306 NGLFKR 311
F+R
Sbjct: 293 GKQFRR 298
>gi|420249934|ref|ZP_14753167.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
gi|398063231|gb|EJL54981.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
Length = 333
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/277 (47%), Positives = 176/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R +S+H WLYTEM+ +I+ G+++R LAF+ ++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIH--GDVERHLAFTADEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVDD D Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDVVSVPVTVKHRIGVDDVDDYAFVRDFVGTIAE-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV A L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVEAHLQH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ + TR + K Y A L GTY
Sbjct: 243 ADVDARFYGSTDAAPTREEAEAKLIEYCRAELARGTY 279
>gi|385209824|ref|ZP_10036692.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
gi|385182162|gb|EIF31438.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
Length = 333
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 177/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P + P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLH--GDVPRHLAFTPAEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIAD-AGCNVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYQLKRDFPHLEIIINGGIKTLDEVETHLQH-VDGVMLGREAYHNP-YRL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ S LTR QV K Y A + GTY
Sbjct: 243 ADVDARFYGSTDSPLTREQVEAKLIDYCAAEMARGTY 279
>gi|407774714|ref|ZP_11122011.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
gi|407282196|gb|EKF07755.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
Length = 331
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 17/331 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R IS+H LYTEM+ I++ G ++R L ++ +HP+ LQ
Sbjct: 7 ISVAPMMDWTDRHDRYFLRQISRHTLLYTEMVTTGAILH--GGVERHLRYNDAEHPVALQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ DNLA+A E+AN Y YDEINLNCGCPS +V +G FG LM P V + +
Sbjct: 65 LGGSDPDNLARACEIANDYAYDEINLNCGCPSDRVQ-NGAFGACLMATPDVVANCVKSMI 123
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++ PV+VK RIG+DD + Y L F V+ + + FI+H+RKA L G+SP ENR +
Sbjct: 124 SASDAPVTVKNRIGIDDQEDYPSLKRFTETVAE-AGCKTFIVHARKAWLKGLSPKENREV 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKYE Y L ++FP+L +NGGI T+DE +A L K VM+GR AYQNP Y L V
Sbjct: 183 PPLKYELVYQLKQEFPELEILINGGIKTLDETDAHL-KHVDGVMIGREAYQNP-YVLADV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL----GTYGNNRPHVRDVMKPLLHFFHSEPGN 306
D YG + L+R QVVE Y + L GT G+ V + +L F G
Sbjct: 241 DRRFYGDDAKPLSRHQVVEAMLPYIEEHLKEEHGTIGH-------VTRHMLGLFQQMRGA 293
Query: 307 GLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + E + +P+
Sbjct: 294 KQWRRYLSENAHRKGAGTEVVREALALVPEQ 324
>gi|183221906|ref|YP_001839902.1| tRNA-dihydrouridine synthase A [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911975|ref|YP_001963530.1| tRNA-dihydrouridine synthase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776651|gb|ABZ94952.1| tRNA-dihydrouridine synthase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167780328|gb|ABZ98626.1| tRNA-dihydrouridine synthase A [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 323
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 186/318 (58%), Gaps = 9/318 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H+R RLISKHA LYTEM+ I+ + N R+L FS E+HPI LQ
Sbjct: 10 ISVAPMMDWTDRHFRYFIRLISKHALLYTEMVTTGAILRGKDN-HRYLDFSKEEHPIALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ ++ Y YDEINLN GCPS +V G FG LM +P V E ++
Sbjct: 69 LGGDSPKALAECAKIGEDYGYDEINLNVGCPSDRVQS-GSFGACLMKEPDLVAEMVAFCK 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIGV+ +SY L F+ K+ + H I+H+R A+L G+SP ENRTI
Sbjct: 128 SKVKIPVTVKHRIGVNGKESYEDLHQFVSKIQK-AGVDHCIVHARIAILEGLSPKENRTI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L DFP+L T+NGGI T E+ L K A VMVGRAAY NP + V
Sbjct: 187 PPLRYEDVYRLKSDFPNLPITINGGIKTHAEIKTHLTK-ADGVMVGRAAYDNP-FLFADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ +G+ +TR +++K Y ++ + G V +++ +L +H E G F+
Sbjct: 245 DSLYFGSKEGTITRESILQKMIPYVQSVRMSGGK----VSHILRHILGLYHGEKGAREFR 300
Query: 311 RKADAAFQTCKTVKSFLE 328
R +S LE
Sbjct: 301 RYFTNGMHLTSATESILE 318
>gi|413962803|ref|ZP_11402030.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
gi|413928635|gb|EKS67923.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
Length = 334
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/277 (47%), Positives = 176/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L RL+S+H WLYTEM+ ++Y G++ R LAF+P + P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRLVSRHTWLYTEMVTTGALLY--GDVARHLAFTPAEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LAK+ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDTVEEYEFVRDFVGTIAD-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKYEY Y L RDFP L ++NGGI T+DEV L K VM+GR AY NP Y L
Sbjct: 185 REIPPLKYEYAYRLKRDFPQLEISINGGIKTLDEVEEHL-KHVDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTY 282
VDT YGA + +R ++ Y G+ GTY
Sbjct: 243 AGVDTRFYGANTPVPSREEIEAGLIDYARGELTRGTY 279
>gi|418720229|ref|ZP_13279427.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str. UI
09149]
gi|418738504|ref|ZP_13294899.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421095040|ref|ZP_15555753.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200801926]
gi|410361750|gb|EKP12790.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200801926]
gi|410743207|gb|EKQ91950.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str. UI
09149]
gi|410745997|gb|EKQ98905.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456890640|gb|EMG01444.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200701203]
Length = 339
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 196/329 (59%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMD TD H+R RLISKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILH--GDRRRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG N LA+++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 73 GGDNPKALAESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPERVAELVCAMDG 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 NVSIPVTVKCRIGISGKETLEDLCRFIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y Y +L ++FPDL +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYAYVESLKKEFPDLLIEINGGIRTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+V+ + + Y + ++ N +PH ++ +L FH + G F+R
Sbjct: 249 SLFFHDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPH--HALRHMLGLFHGQKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
C L + I IP+ LD
Sbjct: 307 VVTERMY-CDYSSDLLLDAIQEIPNDTLD 334
>gi|89075955|ref|ZP_01162327.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
gi|89048304|gb|EAR53883.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
Length = 348
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 187/301 (62%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SK A LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 29 FSVAPMLDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 85
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 86 LGGSNSIDLARCAKLAQERGYDEINLNVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMR 144
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DFI+ VS +F IH+RKA L+G+SP ENR I
Sbjct: 145 DVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREI 204
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGGI T +E+ A L K VMVGR AYQ+P Y + V
Sbjct: 205 PPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEAHL-KHMDGVMVGREAYQSP-YLMAEV 262
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + RR+VVE Y + L N ++ + + +L F S PG ++
Sbjct: 263 DQRLFGSERPVMKRREVVEAMYPYIEKQLA----NGSYLGHITRHMLGLFQSMPGARQWR 318
Query: 311 R 311
R
Sbjct: 319 R 319
>gi|390572878|ref|ZP_10253071.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
gi|389935131|gb|EIM97066.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
Length = 333
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 176/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R +S+H WLYTEM+ +I+ G+++R LAF+ ++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIH--GDVERHLAFTADEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVDD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSVPVTVKHRIGVDDVEDYAFVRDFVGTIAE-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV A L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVEAHLQH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ + TR + K Y A L GTY
Sbjct: 243 ADVDARFYGSTDAAPTREEAEAKLIEYCRAELARGTY 279
>gi|323526215|ref|YP_004228368.1| hypothetical protein BC1001_1876 [Burkholderia sp. CCGE1001]
gi|323383217|gb|ADX55308.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1001]
Length = 333
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/277 (47%), Positives = 178/277 (64%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPHDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDVVSVPVTVKHRIGVDAVEDYSFVRDFVGTIAQ-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIVINGGIKTLDEVETHLQH-VDGVMLGREAYHNP-YLL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ + LTR QV K Y A + GTY
Sbjct: 243 ADVDARFYGSSEAPLTREQVEAKLVEYCAAEMARGTY 279
>gi|377820579|ref|YP_004976950.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
gi|357935414|gb|AET88973.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
Length = 334
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 186/306 (60%), Gaps = 14/306 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L RL+S+HAWLYTEM+ ++Y G++ R LAF+P + P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRLVSRHAWLYTEMVTTGALLY--GDVARHLAFTPAEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LAK+ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDTVEDYEFVRDFVGTIAD-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKYEY Y L RDFP L ++NGGI T+DEV L K VM+GR AY NP Y L
Sbjct: 185 REIPPLKYEYAYRLKRDFPHLEISINGGIKTLDEVEEHL-KHVDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPG 305
VDT YGA + +R + + Y L GTY + V + L + PG
Sbjct: 243 AGVDTRFYGADTPVPSREAIEAELIDYARHELARGTY------LGAVTRHALGLYRGVPG 296
Query: 306 NGLFKR 311
++R
Sbjct: 297 ARGWRR 302
>gi|295676394|ref|YP_003604918.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1002]
gi|295436237|gb|ADG15407.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1002]
Length = 333
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/277 (47%), Positives = 177/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDVVSVPVTVKHRIGVDTVEEYGFVRDFVGTIAE-AGCEVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV+ L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYQLKRDFPQLEIIINGGIKTLDEVDTHLQH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTY 282
VD YG+ S TR QV K Y + GTY
Sbjct: 243 ADVDARFYGSTQSPPTRDQVEAKLIEYCATEMARGTY 279
>gi|238027482|ref|YP_002911713.1| dihydrouridine synthase [Burkholderia glumae BGR1]
gi|237876676|gb|ACR29009.1| Dihydrouridine synthase [Burkholderia glumae BGR1]
Length = 336
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/273 (48%), Positives = 177/273 (64%), Gaps = 8/273 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R+L R IS+H WLYTEM+ +++ G++ R LAF+P++ P+ LQ+
Sbjct: 16 SVAPMMDWTDRHCRSLHRTISRHTWLYTEMVTTGALMH--GDVARHLAFTPDEAPVALQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS D+LAK+ L + YDEINLNCGCPS +V G FG LM +P V + + +
Sbjct: 74 GGSEPDDLAKSARLGENWGYDEINLNCGCPSERVQ-RGAFGACLMNEPGLVADCVKAMRD 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L G+SP ENR IP
Sbjct: 133 AVSVPVTVKHRIGVDAVEEYAFVRDFVGTVAQ-AGCDVFIVHARNAILKGLSPKENREIP 191
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PLKY+Y Y L +DFPDL +NGGI T+DEV A L+ VM+GR AY NP + L VD
Sbjct: 192 PLKYDYAYRLKQDFPDLEIIINGGITTLDEVEAHLQH-VDGVMLGREAYHNP-FVLAEVD 249
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
YGA ++ TR ++ E+ Y A + GTY
Sbjct: 250 RRFYGAAAAAPTREEIEERLIAYCVAEIARGTY 282
>gi|91783334|ref|YP_558540.1| tRNA-dihydrouridine synthase A [Burkholderia xenovorans LB400]
gi|91687288|gb|ABE30488.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia xenovorans
LB400]
Length = 333
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 177/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P + P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSLHRVISRHTWLYTEMVTTGALLH--GDVPRHLAFTPVEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 126 AMRDAVSVPVTVKHRIGVDAVEEYGFVRDFVGTIAD-AGCNVFIVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV L+ VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYQLKRDFPHLEIIINGGIKTLDEVETHLQH-VDGVMLGREAYHNP-YLL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YG+ + LTR QV K Y A + GTY
Sbjct: 243 AGVDARFYGSADTPLTREQVEAKLIDYCAAEMARGTY 279
>gi|428771509|ref|YP_007163299.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
gi|428685788|gb|AFZ55255.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
Length = 336
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 183/300 (61%), Gaps = 10/300 (3%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMD+TD H+R + R+++KH LYTEM+ + II+ G+ + L FSPE+ P+ LQ+
Sbjct: 20 SIAPMMDYTDRHFRYVMRVLTKHTLLYTEMITTQAIIH--GDRTKLLDFSPEEKPVALQL 77
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG N LA+ ++ + YDEINLN GCPS +V +G FG LM P V + +
Sbjct: 78 GGDNPQQLAECAKIGADWGYDEINLNVGCPSSRVQ-NGNFGACLMAQPDTVARCVEAMNK 136
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N+PV+VK RIG+DD DSY L +FI VSS R FIIH+RKA L G+SP ENR IP
Sbjct: 137 AVNIPVTVKHRIGIDDQDSYGDLLNFIKIVSSTGCDR-FIIHARKAWLQGLSPKENREIP 195
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+YE Y + +D P LT +NGGI T++ L K VM+GRAAY NP Y +D
Sbjct: 196 PLRYEDVYQIKQDLPHLTIEINGGIKTIEATKQHLTK-VDGVMIGRAAYDNP-YLFASID 253
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
IYG+ TR ++VE Y D L T N + + +M+ L F +PG+ ++KR
Sbjct: 254 QEIYGSSEPIKTREEIVESLYPYID--LWTSRNLK--LNTIMRHTLQIFAGQPGSKIWKR 309
>gi|291296460|ref|YP_003507858.1| YjbN family TIM-barrel protein [Meiothermus ruber DSM 1279]
gi|290471419|gb|ADD28838.1| TIM-barrel protein, yjbN family [Meiothermus ruber DSM 1279]
Length = 339
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H+R L RLIS+ LYTEM+ ++I+ GN + L FSPE+HP+ LQ
Sbjct: 11 LSVAPMLDWTDRHFRYLVRLISRRVRLYTEMVVDQSILL--GNRPKLLDFSPEEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS + LA+A + A+ YDEINLN GCPS +V G G FG LML+P V E+M+ +
Sbjct: 69 LGGSVPEKLAEAARIGEAWGYDEINLNLGCPSERVQG-GGFGACLMLEPDLVAESMAAMR 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+ K R+GVD+ + Y L F+ K++ + FI+H+RKA L G+SPAENRTI
Sbjct: 128 QAVKIPVTAKHRLGVDEVEDYRYLARFVEKLAGVG-VGVFIVHARKAYLKGLSPAENRTI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L +DFP LT LNGG+ T++EV A L K VM+GRA Y++P + L
Sbjct: 187 PPLRYDWVYRLKQDFPHLTIVLNGGVRTLEEVQAHLAK-VDGVMLGRAVYEDP-FVLEPA 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + TR +V + Y +A L + + + +L+ F +P L++
Sbjct: 245 DRRLFGE-AHATTRLEVAQAMLRYAEAQL----EQGTPLWAMARHMLNLFKGQPRGRLWR 299
Query: 311 R 311
R
Sbjct: 300 R 300
>gi|156082854|ref|XP_001608911.1| dihydrouridine synthase (Dus) domain containing protein [Babesia
bovis T2Bo]
gi|154796161|gb|EDO05343.1| dihydrouridine synthase (Dus) domain containing protein [Babesia
bovis]
Length = 362
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 196/313 (62%), Gaps = 8/313 (2%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGN-LDRFLAFS 61
R + P +APM+D T +R RLI+K A L+TEM+A ++IY + + L
Sbjct: 10 GRSHDRPLVQIAPMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSDKVGSMLHCD 69
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
+HPIVLQ+GG+NLD+L+KA +A Y Y E NLN GCPS +V+G GCFG +LM D
Sbjct: 70 ANEHPIVLQLGGNNLDSLSKAGNIALGYGYTEFNLNVGCPSTRVSGKGCFGAALMNDAPL 129
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
VG + + + PV+VK R+GVD +DSY + DFI V+ T FI+H+RKA LNG
Sbjct: 130 VGRIVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQGCT-DFIVHARKAWLNG 188
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
I+P +NR+IPPL +E Y L ++FP+L ++NGGI +++E+ AL +G + VMVGR AY+
Sbjct: 189 INPRKNRSIPPLDHERVYRLCQEFPNLNISINGGIKSLEEIKYALSRGVYGVMVGRMAYE 248
Query: 242 NPWYTLGHVDTAIYGA---PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 298
NP L VDT IYG P++ TRR ++E Y + D+ + +V ++KP+L
Sbjct: 249 NPC-GLVRVDTDIYGEATNPATCKTRRILLETYANFIDSQASRTSD--MNVCMLVKPILG 305
Query: 299 FFHSEPGNGLFKR 311
FH E G +F++
Sbjct: 306 TFHGEVGTKIFRQ 318
>gi|220935021|ref|YP_002513920.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996331|gb|ACL72933.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 336
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 184/300 (61%), Gaps = 10/300 (3%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R RLIS+H LYTEM+ +++ G+ +RFLAF P++HP+ LQ+
Sbjct: 22 SVAPMMDWTDRHCRYFLRLISRHTLLYTEMVTTGALLH--GDRERFLAFHPDEHPLALQL 79
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS LA +A + YDE+NLN GCPS +V G FG LM +P+ V + + + +
Sbjct: 80 GGSEPGELAACARMAEDHGYDEVNLNVGCPSDRVQS-GRFGACLMAEPQLVADCVEAMRS 138
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+PV+VK RIG+DD DSY +L FI V S R FIIH+RKA L G+SP ENR +P
Sbjct: 139 ACGLPVTVKTRIGIDDRDSYPELTAFIDTVQR-SGCRTFIIHARKAWLQGLSPRENREVP 197
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL++++ Y L +DFP L LNGG+ +D V+ ALR+ VM+GR AY NP Y L VD
Sbjct: 198 PLRHDWVYRLKQDFPALEIILNGGVKDLDTVSDALRQ-VDGVMLGREAYHNP-YVLAQVD 255
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
YG +R QVVE++ Y +A L P ++ + + +L F PG ++R
Sbjct: 256 ARFYGDAHPVPSRHQVVERFLPYVEARL---AQGVP-LQAMTRHILGLFQGVPGARAWRR 311
>gi|209694000|ref|YP_002261928.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|208007951|emb|CAQ78084.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 338
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LY+EM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 19 FSVAPMLDWTDRHCRYFHRQLSEHALLYSEMITTGAIIHGKGD---FLAYNEEEHPLALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM DP+ V E ++ +
Sbjct: 76 LGGSNAKDLAHCAKLAADRGYDEINLNVGCPSDRVQ-NGRFGACLMADPELVAECIAEMK 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L F+ V F IH+RKA L+G+SP ENR I
Sbjct: 135 AVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y + +DFP L +NGGI T++E L AH VM+GR AYQ+P Y L
Sbjct: 195 PPLDYPRAYQIKKDFPQLIIAVNGGIKTLEEAKEHL---AHLDGVMIGREAYQSP-YLLA 250
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD ++G+ RR++VE Y + L N H+ + + +L F S PG
Sbjct: 251 EVDQQLFGSDKPIKKRREIVESMYPYIERQL----ENGAHLGHITRHMLGLFQSMPGARQ 306
Query: 309 FKR 311
++R
Sbjct: 307 WRR 309
>gi|90581341|ref|ZP_01237137.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
gi|90437451|gb|EAS62646.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
Length = 346
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 186/301 (61%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SK A LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 84 LGGSNPIDLARCAKLAQERGYDEINLNVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DFI+ VS +F IH+RKA L+G+SP ENR I
Sbjct: 143 DVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGGI T +E+ L K VMVGR AYQ+P Y + V
Sbjct: 203 PPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEEHL-KHMDGVMVGREAYQSP-YLMAEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + RR+VVE Y + L N ++ + + +L F S PG ++
Sbjct: 261 DQRLFGSERPVMKRREVVEAMYPYIEKQLA----NGSYLGHITRHMLGLFQSMPGARQWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|94986095|ref|YP_605459.1| tRNA-dihydrouridine synthase A [Deinococcus geothermalis DSM 11300]
gi|94556376|gb|ABF46290.1| tRNA-U16,U17-dihydrouridine synthase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 190/334 (56%), Gaps = 10/334 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P FSVAPMMDWTD H R R +++ LYTEM+ I++ G+ R L FSP +HP+
Sbjct: 8 PHTFSVAPMMDWTDRHCRAFHRTLTRRTLLYTEMVTTGAILH--GDRARHLGFSPAEHPV 65
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS+ LA+ +A + YDE+NLNCGCPS +V +G FG LM P V A+
Sbjct: 66 ALQLGGSDPAALAECARIAQDWGYDEVNLNCGCPSDRVQ-NGSFGACLMATPDVVARAVE 124
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ T +PV+VK RIG+DD DSY L F+ V+ + + FI+H+RKA L+G+SP EN
Sbjct: 125 AMRGATTLPVTVKHRIGIDDLDSYEHLTRFVRTVAE-AGCQTFIVHARKAWLSGLSPKEN 183
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE L DFP LT LNGG+ T+ L A VMVGRAAYQ+P Y L
Sbjct: 184 REIPPLRYEVVRQLKADFPHLTVVLNGGVLTLAAAQEHL-AWADGVMVGRAAYQDP-YLL 241
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D ++G + TRR+ +E + Y + +P R +M+ L F +PG
Sbjct: 242 AAADRDLFGEDVTPPTRREAIEAFLPY---VAAQLAEGQPLHR-MMRHTLGLFAGQPGAR 297
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
+KR + E + +P+SVLD+
Sbjct: 298 HWKRTLSERGHRPGAGLEVVREALAGVPESVLDA 331
>gi|167836742|ref|ZP_02463625.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 339
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 173/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA A +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHAAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD D Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDSVDDYAFVRDFVGTVAA-AGCEVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YGA + TR V K Y L GTY
Sbjct: 243 AGVDARFYGATAPAPTREAVEAKLVEYCATELARGTY 279
>gi|343515823|ref|ZP_08752871.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
gi|342797458|gb|EGU33106.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
Length = 346
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 189/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ ++HP+VLQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGD---FLAYNEQEHPLVLQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 84 LGGSNTSDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DDHDSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 143 DVVDIPVTVKTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF L +NGG+ T+ EV L K VMVGR AYQNP Y L V
Sbjct: 203 PPLDYPRAYQLKKDFAHLVIAVNGGVKTLQEVQEHL-KHLDGVMVGREAYQNP-YILAEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G R QVVE+ Y + L +N ++ + + +L F + PG ++
Sbjct: 261 DQLIFGLDKPVKKRTQVVEEMYPYIEQQL----SNGAYLGHMTRHMLGLFQNMPGARQWR 316
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + +E + IP +
Sbjct: 317 RHISENAHKPGSGIEVVEAALAKIPKEL 344
>gi|254514697|ref|ZP_05126758.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
gi|219676940|gb|EED33305.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
Length = 343
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 187/313 (59%), Gaps = 14/313 (4%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
+ AR+ P F APMMDW++ H R RL+S+HA LYTEM+ +I+ G+ RFL F
Sbjct: 15 VTARETSPWRFCTAPMMDWSNRHCRYFWRLLSQHARLYTEMVTTGALIH--GDRQRFLQF 72
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
+ E+ PI LQ+GGSN D+LA+ A A+ YDE+NLNCGCPS +V +G FG LM +P+
Sbjct: 73 NAEETPIALQLGGSNPDDLARCAAWAEAWGYDEVNLNCGCPSDRVQ-NGAFGACLMAEPE 131
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V +A+S + + + V+VK RIG+D +SY +LC F+ V+ FI+H+RKA L
Sbjct: 132 LVRDAVSAMRSACEIDVTVKHRIGIDHMESYEELCHFVGTVAD-GGCSVFIVHARKAWLK 190
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP ENR +PPL Y + Y L RDFP LT +NGGI ++D+ L + VM+GR+AY
Sbjct: 191 GLSPKENREVPPLTYPWVYRLKRDFPALTIVINGGIESIDDCEPHLAR-VDGVMLGRSAY 249
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLH 298
NPW L VD ++G P R +++ Y + L GT N + + +L
Sbjct: 250 HNPW-VLAEVDRRLFGEPQQPRCREDIIDALMPYVEKELASGTRLNQ------ITRHILG 302
Query: 299 FFHSEPGNGLFKR 311
+ PG ++R
Sbjct: 303 LYQEVPGAKRYRR 315
>gi|407783743|ref|ZP_11130938.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
gi|407200178|gb|EKE70189.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
Length = 333
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RLIS+ A LYTEM+ +++ G+ R L F +HP+ Q
Sbjct: 9 LSVAPMMDWTDRHDRFFLRLISRQALLYTEMVTTGAVLH--GDRQRLLRFDAAEHPVACQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS D+LA+A E+ + YDE+NLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 LGGSEPDDLARAAEVVEGFGYDEVNLNCGCPSDRVQ-KGRFGACLMAEPETVAAGVKAMI 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T++PV+VK RIGVD+ + Y L FI V+ + R FI+H+RKA L G+SP ENR I
Sbjct: 126 AATSLPVTVKSRIGVDEMEDYADLKRFIETVAD-AGCRSFIVHARKAWLKGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL+YE Y L ++ P+LT LNGG+ T+D+ A L AH VM+GRAAYQ P Y L
Sbjct: 185 PPLRYELVYRLKQELPELTIVLNGGVATLDQAAAHL---AHVDGVMIGRAAYQEP-YMLA 240
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D +GA + +RRQV+E + Y + L G H + + +L ++ PG
Sbjct: 241 DADRRFFGASAPAPSRRQVLEAFLPYVERELAQ-GTPLAH---MTRHILGLYNGLPGARA 296
Query: 309 FKR 311
F+R
Sbjct: 297 FRR 299
>gi|262163875|ref|ZP_06031615.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
gi|262027855|gb|EEY46520.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
Length = 335
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 189/333 (56%), Gaps = 10/333 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+ +Y P FSVAPM+DWTD H R RL+S A LYTEM+ II+ +G+ FLA++
Sbjct: 7 SSKYAPCRFSVAPMLDWTDRHCRYFHRLLSSQALLYTEMVTTGAIIHGRGD---FLAYNQ 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V
Sbjct: 64 EEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
E ++ + + ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+
Sbjct: 123 AECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL Y Y + RD P LT +NGG+ T++E L+ VM+GR AYQN
Sbjct: 183 SPKENREIPPLDYPRAYQIKRDLPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P Y L VD I+G + R QV+ + Y + L + H+ + + +L F +
Sbjct: 242 P-YLLAEVDQQIFGLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQN 296
Query: 303 EPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
PG ++R +E+ + IP
Sbjct: 297 MPGARQWRRHISENAHKPGAGLEVVEQALAKIP 329
>gi|456864580|gb|EMF82979.1| tRNA dihydrouridine synthase A [Leptospira weilii serovar Topaz
str. LT2116]
Length = 339
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 195/329 (59%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAILH--GDRRRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + LA+++++ Y Y EINLN GCPS +V G FG LM P+ V E + + +
Sbjct: 73 GGDDPKALAESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPEKVAELVYSMDS 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 NVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y Y +L FPDL +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYAYVESLKEQFPDLLIEINGGIRTLAEMRDRL-KANDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+V+ + + Y + ++ N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFHDNSPSLSRREVLLRMRDYIEEVVLKERNGKPH--HALRHMLGLFHGEKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
C L + + I + LD
Sbjct: 307 ILTERMY-CDYSSDLLLDAVKEISNDTLD 334
>gi|381150765|ref|ZP_09862634.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
gi|380882737|gb|EIC28614.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
Length = 312
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD + R RLI+K A LYTEM+ +++ G+ RFL F +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRYCRFFHRLITKRALLYTEMITTGALLH--GDRQRFLQFDSSEHPLALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA ++A + YDE+NLN GCPS +V +G FG LM +P+ V E ++ + ++
Sbjct: 59 PADLAACAKMAEDFGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMRNAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY +L FI V+ + R FI+H+RKA L G+SP +NR +PPL+Y
Sbjct: 118 PVTVKSRIGIDDRDSYEELAHFIGTVAD-AGCRTFIVHARKAWLKGLSPKQNREVPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E Y L +DFP L LNGGI T+++ ALR G VM+GR AY NP Y L VD ++
Sbjct: 177 EMVYRLKQDFPPLRIVLNGGITTLEQAEEALRNGVDGVMMGREAYHNP-YILAEVDRRLF 235
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G P+ + R ++V + Y + L R H + + +L FH EPG ++R
Sbjct: 236 GMPADAVPRSEIVNRLMPYIERQLAE--GVRLH--SITRHILGLFHGEPGARSWRR 287
>gi|359687045|ref|ZP_09257046.1| tRNA-dihydrouridine synthase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750942|ref|ZP_13307228.1| tRNA dihydrouridine synthase A [Leptospira licerasiae str. MMD4847]
gi|418756407|ref|ZP_13312595.1| tRNA dihydrouridine synthase A [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384116078|gb|EIE02335.1| tRNA dihydrouridine synthase A [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273545|gb|EJZ40865.1| tRNA dihydrouridine synthase A [Leptospira licerasiae str. MMD4847]
Length = 349
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 194/329 (58%), Gaps = 11/329 (3%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H+R RLI+K + YTEM+ I+ +G+ RFL FS E+ P+ LQ+
Sbjct: 14 SVAPMMDWTDRHFRFFLRLITKRSLFYTEMVTTGAIL--RGDKHRFLRFSREESPLSLQL 71
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG N LA+ ++ Y Y EINLN GCPS KV G FG LM DP V + +S + +
Sbjct: 72 GGDNASQLAECAKIGEEYGYSEINLNVGCPSDKVQ-EGNFGACLMKDPNKVADCISEMDS 130
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
T++PV+VKCRIGV ++ L +F+ VS+ + R IH+R A+L G+SPA+NRT+P
Sbjct: 131 KTSIPVTVKCRIGVRGKETLEDLHEFVRSVST-AGARRITIHARIAILEGLSPAQNRTVP 189
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+YE Y++ + FP LT LNGG+ +V ++ + L K VM+GRAAY+NP + VD
Sbjct: 190 PLRYEDVYSIKKSFPGLTIELNGGVKSVSDIRSHLDK-VDGVMIGRAAYENP-FLFSDVD 247
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G L+RR++ E Q Y A T +P +++ LL FH G ++R
Sbjct: 248 SEFFGGEPLNLSRREIFESMQEYVSA--QTAEGEKPS--RILRHLLGAFHEIRGARSYRR 303
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + L E + +IPD LD
Sbjct: 304 ILTEKMHSNPGPRLLL-EALESIPDEYLD 331
>gi|343495972|ref|ZP_08734079.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821813|gb|EGU56579.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 323
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S +A LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 4 FSVAPMLDWTDRHCRYFHRLMSDNALLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 61 LGGSNPADLATCAKLAQDRGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMR 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 120 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSVVSEKGGCEQFTIHARKAWLSGLSPKENREI 179
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +DFP+LT +NGGI T++E A L+ VM+GR AYQ+P Y L V
Sbjct: 180 PPLDYPRAYQIKKDFPNLTIAINGGIKTLEEAKAHLQH-LDGVMIGREAYQSP-YILASV 237
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G+ S R +V Y + L GTY + + + +L F S PG
Sbjct: 238 DQELFGSDKSIKKRSDIVRAMYPYIEKELSKGTY------LGHMTRHMLGLFQSMPGARQ 291
Query: 309 FKR 311
++R
Sbjct: 292 WRR 294
>gi|114564502|ref|YP_752016.1| tRNA-dihydrouridine synthase A [Shewanella frigidimarina NCIMB 400]
gi|114335795|gb|ABI73177.1| TIM-barrel protein, yjbN family protein [Shewanella frigidimarina
NCIMB 400]
Length = 349
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 190/303 (62%), Gaps = 15/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S A LYTEM+ I+ +G+ +LA++ ++HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHYRYFARLMSSKALLYTEMITTGAILQGKGD---YLAYNEQEHPVALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P V + + +
Sbjct: 81 LGGSNAVDLAACAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPALVAQCVDAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++P++VK RIG+D+ DSY L DFI VS+ + F IH+RKA L G+SP ENR I
Sbjct: 140 QVTDIPITVKTRIGIDEQDSYQFLTDFIETVSAQGCSA-FTIHARKAWLQGLSPKENREI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDE--VNAALRKGAHHVMVGRAAYQNPWYTLG 248
PPL Y+ Y L RD+ L ++NGGI T++E ++ AL G VMVGR AYQNP Y L
Sbjct: 199 PPLDYDRVYQLKRDYQHLNISINGGIKTLEESKLHLALLDG---VMVGREAYQNP-YILA 254
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD + G ++ +TR+QV+E+ Y +A L G + + + ++ F PG+
Sbjct: 255 QVDQQLCGLDTAVITRQQVIEQMLPYIEAHLAQGG----RLNHITRHMIGLFQGLPGSRG 310
Query: 309 FKR 311
++R
Sbjct: 311 WRR 313
>gi|428164490|gb|EKX33514.1| hypothetical protein GUITHDRAFT_81327 [Guillardia theta CCMP2712]
Length = 317
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 180/306 (58%), Gaps = 13/306 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPMMDWTD + R RLISK+ W+Y+EM+ I+ GN DR L F P++HPI LQ
Sbjct: 17 LCVAPMMDWTDRYDRYFLRLISKNTWMYSEMVTTSAIL--NGNQDRLLGFFPQEHPIALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++LAK ++ +Y YDEINLN GCPS +V+ G FG LM +P+ V + ++ +
Sbjct: 75 LGGSDPEDLAKCAKVGESYGYDEINLNVGCPSERVS-TGSFGACLMAEPELVRDCVAAMR 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ VPV+VK RIG+D DSY+ LC F+ V + FI+H+RKA+L G+SP ENR I
Sbjct: 134 ESVKVPVTVKHRIGIDHLDSYDLLCKFVSTVEE-GGCKTFIVHARKAILKGLSPKENREI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-----GAHHVMVGRAAYQNPWY 245
PPL+Y + L +DFP L +NGGI + + A L + G VM+GR+AY P+
Sbjct: 193 PPLQYHVVHQLKQDFPQLEIIINGGITDLSQARAHLEQAGRAGGMDGVMIGRSAYHEPYK 252
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L D IY G+T Q++E+ + D L + + + + FH PG
Sbjct: 253 ILSRADMEIYNDEGGGVTYFQIIEEMLPFIDEQL----KAGVSLNSITRHMQGLFHGCPG 308
Query: 306 NGLFKR 311
F+R
Sbjct: 309 GRAFRR 314
>gi|359727114|ref|ZP_09265810.1| tRNA-dihydrouridine synthase A [Leptospira weilii str. 2006001855]
gi|417781119|ref|ZP_12428874.1| tRNA dihydrouridine synthase A [Leptospira weilii str. 2006001853]
gi|410778760|gb|EKR63383.1| tRNA dihydrouridine synthase A [Leptospira weilii str. 2006001853]
Length = 339
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 195/329 (59%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAILH--GDRRRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + LA+++++ Y Y EINLN GCPS +V G FG LM P+ V E + + +
Sbjct: 73 GGDDPKALAESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPEKVAELVCAMDS 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y Y +L FPDL +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYAYVESLKEQFPDLLIEINGGIRTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+V+ + + Y + ++ N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFHDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
C L + + I + LD
Sbjct: 307 ILTERMY-CDYSSDLLLDAVREISNDTLD 334
>gi|83721523|ref|YP_443015.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|167620175|ref|ZP_02388806.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis Bt4]
gi|257139245|ref|ZP_05587507.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|83655348|gb|ABC39411.1| dihydrouridine synthase [Burkholderia thailandensis E264]
Length = 339
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 171/277 (61%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS LA + L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPAELAHSARLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V+S + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAIEDYAFVRDFVGTVAS-AGCEVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIVINGGITTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YGA TR V K Y A L GTY
Sbjct: 243 AGVDARFYGATEPAPTREAVEAKLVEYCAAELARGTY 279
>gi|167582008|ref|ZP_02374882.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis TXDOH]
Length = 339
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 171/277 (61%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS LA + L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPAELAHSARLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V+S + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAIEDYAFVRDFVGTVAS-AGCEVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQLEIVINGGITTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
VD YGA TR V K Y A L GTY
Sbjct: 243 AGVDARFYGATEPAPTREAVEAKLVEYCAAELARGTY 279
>gi|167919102|ref|ZP_02506193.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BCC215]
Length = 339
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR QV K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREQVEAKLVEYCAAELARGTY 279
>gi|398343502|ref|ZP_10528205.1| tRNA-dihydrouridine synthase A [Leptospira inadai serovar Lyme str.
10]
Length = 356
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 192/334 (57%), Gaps = 11/334 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H+R RLISK LYTEM+ I+ +G+ R L+F P ++P+VLQ
Sbjct: 28 ISVAPMMDWTDRHFRFFLRLISKRTLLYTEMVTTGAIL--RGDTHRHLSFHPRENPVVLQ 85
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ + + Y Y EINLN GCPS KV G FG LM DPK V + ++ +
Sbjct: 86 LGGDDPLKLAECSRIGEEYGYSEINLNVGCPSDKVQ-EGNFGACLMGDPKRVSDCIAAMN 144
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PVSVKCRIG+ D L +F+ VS TR +H+R A+L G+SPA+NRT+
Sbjct: 145 SAVRIPVSVKCRIGIPGKDRIEDLLEFVRTVSEAGATR-ITVHARIAILEGLSPAQNRTV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y + R+FPDL LNGG+ T+D + L K VM+GRAAY+NP + L V
Sbjct: 204 PPLRYEDVYEVKRNFPDLKLELNGGVRTLDIASEHLTK-VDGVMIGRAAYENP-FLLSTV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G TRR++ ++ Q Y T +P +++ LL FH G+ +++
Sbjct: 262 DRRFFGEQKIRSTRREIFDQMQEYVRK--RTEEGEKPS--RILRHLLGAFHEVRGSRMYR 317
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 344
R + L E + +IP LD ++
Sbjct: 318 RILTEGMHQNPPA-TLLREALASIPSEFLDQKLD 350
>gi|398332309|ref|ZP_10517014.1| tRNA-dihydrouridine synthase A [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 339
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 196/329 (59%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMD TD H+R RLISKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDCTDRHFRYFLRLISKHTFLYTEMIHTGAILH--GDRRRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + LA+++++ Y Y EINLN GCPS +V G FG LM P+ V E + + +
Sbjct: 73 GGDDPKALAESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPEKVAELVCAMDS 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 NVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVRRFIVHARIAVLGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y Y +L FPDL +NGGI T+ E+ L+K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYAYVESLKEQFPDLLIEINGGIRTLAEMQDRLKKN-DGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+V+ + + Y + ++ N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFRDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
C L + + I ++ LD
Sbjct: 307 ILTERM-YCDYSSDLLLDAVQEISNNTLD 334
>gi|209520920|ref|ZP_03269659.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
gi|209498644|gb|EDZ98760.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
Length = 317
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 168/255 (65%), Gaps = 6/255 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+PE+ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPEEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA++ L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PDDLARSARLGEQWGYDEINLNCGCPSERVR-RGAFGACLMNEPQLVADCVKAMRDVVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDTVEEYGFVRDFVGTIAQ-AGCEVFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV+ L+ VM+GR AY NP Y L VD+ Y
Sbjct: 177 DYAYQLKRDFPQLEIIINGGIKTLDEVDTHLQH-VDGVMLGREAYHNP-YVLAEVDSRFY 234
Query: 256 GAPSSGLTRRQVVEK 270
G+ + LTR QV K
Sbjct: 235 GSTQAPLTREQVEAK 249
>gi|343505067|ref|ZP_08742715.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
gi|342809053|gb|EGU44183.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
Length = 326
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 188/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ ++HP+VLQ
Sbjct: 7 FSIAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGD---FLAYNEQEHPLVLQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNTADLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DDHDSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 YVVDIPVTVKTRIGIDDHDSYEFLTDFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF L +NGG+ T+ E L K VMVGR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQLKKDFAHLVIAVNGGVKTLQETQEHL-KHLDGVMVGREAYQNP-YILAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G R QVVE+ Y + L +N ++ + + +L F + PG ++
Sbjct: 241 DQLIFGLDKPIKKRTQVVEEMYPYIEQQL----SNGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + +E + IP +
Sbjct: 297 RHISENAHKPGSGIEVVEAALAKIPKEL 324
>gi|167586199|ref|ZP_02378587.1| tRNA-dihydrouridine synthase A [Burkholderia ubonensis Bu]
Length = 339
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 174/279 (62%), Gaps = 9/279 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R +++H WLYTEM+ +++ G+ R LAF+P +
Sbjct: 7 LPPRRVSVAPMLDWTDRHCRSFHRTLTRHTWLYTEMITTGALLF--GDAQRHLAFTPSES 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 65 PVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + +VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP
Sbjct: 124 VKAMRDAVSVPVTVKHRIGVDAVEEYAFVRDFVGTVAE-AGCEVFVVHARNAILKGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-Y 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
L VD YGA + TR + E+ Y A L GTY
Sbjct: 241 VLAGVDARFYGANDAAPTREEAEERLIEYCAAELKRGTY 279
>gi|330445027|ref|ZP_08308681.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493145|dbj|GAA03178.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 346
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 186/301 (61%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R++SK A LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRIMSKEALLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 84 LGGSNPIDLARCAKLAQERGYDEINLNVGCPSDRVQ-NGMFGACLMGEAELVAQCVTAMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DFI+ VS +F IH+RKA L+G+SP ENR I
Sbjct: 143 DVVDIPVTVKTRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGGI T +E+ L K VMVGR AYQ+P Y + V
Sbjct: 203 PPLDYPRVYQLKQDFAHLTMAINGGIKTFEEMEEHL-KHMDGVMVGREAYQSP-YLMSEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + RR+VVE Y + L N ++ + + +L F + PG ++
Sbjct: 261 DQRLFGSDRPVMKRREVVEAMYPYIEKQLA----NGSYLGHITRHMLGLFQNMPGARQWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|338739151|ref|YP_004676113.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
gi|337759714|emb|CCB65545.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
Length = 334
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 185/327 (56%), Gaps = 10/327 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
QY FSVAPMMDWTD H R R ++K A LYTEM+ A+ +I+ G+ +R L FS E+
Sbjct: 2 QYQAHRFSVAPMMDWTDRHCRVFHRRLTKRALLYTEMVTADAVIH--GDRERLLGFSAEE 59
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HPI LQ+GGS+ LA A + YDEINLN GCPS +V G FG LM +P+ V
Sbjct: 60 HPIALQLGGSDPAKLATAARIGADLGYDEINLNVGCPSDRVQ-EGRFGACLMAEPELVAA 118
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+S + + VPVSVKCRIG+DD D+ L FI V+ T F++H+RKA L G+SP
Sbjct: 119 CVSAMRESQPVPVSVKCRIGIDDQDAEADLTRFIDVVADTGCT-SFVVHARKAWLKGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR +PPL Y+ Y L PDLT +NGGI T+ + L + VM+GRAAYQNP
Sbjct: 178 KENREVPPLDYQRVYRLKARRPDLTIVINGGIETIADAETHL-EHVDGVMLGRAAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L VD AI+ S+ TR + + Y + + G + +V + +L +H +P
Sbjct: 236 YILADVDRAIFADASAPPTRGEALTDLLPYVERHVANGGR----LSNVTRHILGIYHGQP 291
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETI 331
F+R + + L E I
Sbjct: 292 RGRAFRRLLSESATSASATAEVLSEAI 318
>gi|217423368|ref|ZP_03454869.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
gi|217393226|gb|EEC33247.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
Length = 439
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 109 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 166
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 167 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 225
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 226 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 284
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 285 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 342
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 343 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 379
>gi|444375899|ref|ZP_21175150.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
gi|443679987|gb|ELT86636.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
Length = 346
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 192/327 (58%), Gaps = 14/327 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R++SK+A LYTEM+ II+ +G+ FLAF+ E+HP+ LQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRILSKNALLYTEMVTTGAIIHGKGD---FLAFNEEEHPVALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM + + V + +S +
Sbjct: 84 LGGSNPADLATCAKLAVERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAELVAQCVSAMK 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS +F IH+RKA L+G+SP ENR I
Sbjct: 143 EVVDIPVTVKTRIGIDDQDSYEFLVDFVRTVSEKGSCDNFTIHARKAWLSGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT +NGGI +++E L K VM+GR AYQ+P Y L V
Sbjct: 203 PPLDYPRVYQLKKDFPHLTMAINGGIKSLEEAEEHL-KHLDGVMIGREAYQSP-YMLAEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G + + R V+ Y +A L GTY N+ + + +L F + PG
Sbjct: 261 DNRLFGGDAPIIKRSDAVKAMFPYIEAELSKGTYLNH------ISRHMLGLFQNMPGARQ 314
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIP 335
++R + LE + IP
Sbjct: 315 WRRYISENAHKPGSGVEVLEAALAKIP 341
>gi|121600739|ref|YP_993040.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|251768090|ref|ZP_04820399.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
gi|121229549|gb|ABM52067.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|243060848|gb|EES43034.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
Length = 436
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 106 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 163
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 164 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 222
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 223 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 281
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 282 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 339
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 340 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 376
>gi|237812120|ref|YP_002896571.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
gi|237505677|gb|ACQ97995.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
Length = 439
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 109 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 166
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 167 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 225
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 226 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 284
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 285 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 342
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 343 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 379
>gi|242317073|ref|ZP_04816089.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
gi|242140312|gb|EES26714.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
Length = 439
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 109 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 166
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 167 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 225
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 226 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 284
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 285 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 342
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 343 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 379
>gi|116329329|ref|YP_799049.1| tRNA-dihydrouridine synthase A [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330067|ref|YP_799785.1| tRNA-dihydrouridine synthase A [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116122073|gb|ABJ80116.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123756|gb|ABJ75027.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 339
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 196/329 (59%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMD TD H+R RLISKH +LYTEM+ I++ G+ RFL++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILH--GDRRRFLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG N LA+++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 73 GGDNPKALAESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPERVAELVCAMDG 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
N ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 NVSIPVTVKCRIGISGKETLEDLCRFIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y + +L ++FPDL +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYAHVESLKKEFPDLLIEINGGIRTLAEMQDRL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+V+ + + Y + ++ N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFHDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ L + I IP+ LD
Sbjct: 307 VVTERMYYDYS-SDLLLDAIQEIPNDTLD 334
>gi|421098451|ref|ZP_15559120.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
gi|410798414|gb|EKS00505.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
Length = 354
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 199/329 (60%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ +++ G+ RFL++S E+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVLH--GDRRRFLSYSLEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++A Y Y EINLN GCPS +V G FG LM P+ V E + + A
Sbjct: 73 GGDDPKALSESSKIAEDYGYSEINLNVGCPSDRVR-EGNFGACLMETPEKVAELVYAMDA 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + R FI+H+R A+L G+SPA+NR IP
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVRRFIVHARIAILGGLSPAQNRQIP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL Y Y +L +FPDL +NGGI T+ E+ L K VM+GRAAY+NP Y VD
Sbjct: 191 PLHYAYVESLKEEFPDLLIEINGGIRTLAEMQDRL-KTNDGVMIGRAAYENP-YLFSKVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+RR+++ + + Y + ++ N +PH ++ +L FH E G F+R
Sbjct: 249 SLFFRDNSPSLSRREILLRMRDYIEEVVLKEKNGKPH--HALRHMLGLFHGEKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + + L + + +P+ LD
Sbjct: 307 ILTERMYSAYS-SNLLSDAVQEVPNDSLD 334
>gi|238563470|ref|ZP_00438839.2| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
gi|238520653|gb|EEP84111.1| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
Length = 439
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 109 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 166
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 167 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 225
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 226 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 284
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 285 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 342
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 343 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 379
>gi|226940607|ref|YP_002795681.1| tRNA-dihydrouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715534|gb|ACO74672.1| Dihydrouridine synthase [Laribacter hongkongensis HLHK9]
Length = 339
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 182/299 (60%), Gaps = 10/299 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
VAPM+DWTD HYR ARL+S+H WLYTEM+ +I+ G++ R L F +HPI LQ+G
Sbjct: 23 VAPMLDWTDRHYRYFARLLSRHTWLYTEMVTTGALIH--GDVPRHLTFHETEHPIALQLG 80
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS LA+ LA ++ YDE+NLN GCPS +V G FG LM +P V + + +
Sbjct: 81 GSEPAELAQCARLAESWGYDEVNLNVGCPSERVQ-KGAFGACLMKEPGLVADCVRAMRDV 139
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
T +PV+VK RIGVDD +++ + DF+ +V++ + FI+H+R A+L G+SP ENR IPP
Sbjct: 140 TTLPVTVKHRIGVDDVEAFGFVSDFVGEVAAAGCST-FIVHARNAILKGLSPKENREIPP 198
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
LKY+Y + L +FPDL +NGGI T+DE L VM+GR AY NP Y L VD
Sbjct: 199 LKYDYAWRLKAEFPDLEILVNGGIRTLDEAAEQLGH-VDGVMIGREAYHNP-YLLAGVDA 256
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
YG TR +V+E+ Y DA L G VRD+ + +L + PG F++
Sbjct: 257 RFYGDEHPVPTRAEVIERLIPYVDAHLAAGGK----VRDIARHVLGLVNGVPGARRFRQ 311
>gi|375266803|ref|YP_005024246.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
gi|369842123|gb|AEX23267.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
Length = 326
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 192/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 DVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTVAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YILASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y + L ++ + + +L F S PG ++
Sbjct: 241 DQELFGSSAPVKKRSEIVEEMYPYIEEQLA----KGAYIGHITRHMLGLFQSMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|134282264|ref|ZP_01768969.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
gi|134246302|gb|EBA46391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
Length = 379
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 49 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 106
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 107 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 165
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 166 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 224
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 225 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 282
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 283 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 319
>gi|157373905|ref|YP_001472505.1| tRNA-dihydrouridine synthase A [Shewanella sediminis HAW-EB3]
gi|157316279|gb|ABV35377.1| TIM-barrel protein, YjbN family [Shewanella sediminis HAW-EB3]
Length = 327
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 189/301 (62%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR +ARL+S LYTEM+ II+ +G+ +LA++ E+H + LQ
Sbjct: 13 FSIAPMLDWTDRHYRYMARLMSAELLLYTEMVTTGAIIHGKGD---YLAYNSEEHALALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +PK V E ++ +
Sbjct: 70 LGGSNAHDLAICAKLAADRGYDEINLNVGCPSDRVQ-NGRFGACLMAEPKLVAECVTAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L +F+ V + FI+H+RKA L G+SP ENR I
Sbjct: 129 EVVDIPVTVKTRIGIDEQDSYPFLTEFVETVRD-AGCDTFIVHARKAWLKGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L +D+P+L+ ++NGG+ ++DE L K VMVGR AYQNP Y L V
Sbjct: 188 PPLDYDRVYQLKQDYPELSISINGGVKSLDECRTHLTK-LDGVMVGREAYQNP-YMLAEV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ L+R V+EK+ Y + L + G + + + + F EPG+ +++
Sbjct: 246 DQQLCGSDRPVLSRDAVLEKFIPYIEKHLQSGG----RLNHISRHMTGLFQGEPGSRVWR 301
Query: 311 R 311
R
Sbjct: 302 R 302
>gi|254427220|ref|ZP_05040927.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
gi|196193389|gb|EDX88348.1| TIM-barrel protein, yjbN family [Alcanivorax sp. DG881]
Length = 350
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 195/325 (60%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWT YR LARLI++H LYTEM+ A+ I++ G+ DRFL+F+ E+HP+ LQ
Sbjct: 36 LSVAPMMDWTTRDYRFLARLITRHTLLYTEMVVAQAILH--GDRDRFLSFNNEEHPVALQ 93
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A+ +A Y YDEINLN GCPS +V G G LM +P+ V + +
Sbjct: 94 LGGSDPQQLAEASRIAGDYGYDEINLNVGCPSDRVQ-QGKIGAILMAEPELVARCVEAMQ 152
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A VPV+VK RIG+DD D Y+ L F+ ++ + T IH+RKA+L+G+SP ENR I
Sbjct: 153 AAVRVPVTVKTRIGIDDQDDYDFLYRFVGRMEAAGCT-SLTIHARKAILSGLSPKENRDI 211
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ YA+ + FP + LNGG+ T+D+V+ + + VM+GR AYQNP++ L
Sbjct: 212 PPLIYQRAYAIKQAFPHIEIILNGGVKTLDQVHEHMGE-VDGVMIGREAYQNPYF-LAEA 269
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + +R + E++ Y + G+ H ++ +L+ F +PG F+
Sbjct: 270 DRVVFGDDHAIPSRLAIAEQFLPYVERRYA-LGHAPKH---SLRHILNLFQGQPGARRFR 325
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +T L + + +P
Sbjct: 326 RHLSENMHKPETTPQVLMDALAQLP 350
>gi|254197994|ref|ZP_04904416.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
gi|169654735|gb|EDS87428.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
Length = 377
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 47 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 104
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 105 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 163
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 164 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 222
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 223 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 280
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 281 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 317
>gi|254230410|ref|ZP_04923791.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
gi|151937069|gb|EDN55946.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
Length = 354
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 193/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 35 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 91
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 92 LGGSNPEDLAKCAKLAQERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 150
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 151 GVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 210
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L V
Sbjct: 211 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASV 268
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F S PG ++
Sbjct: 269 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWR 324
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 325 RHISENAHKPGSGLEVLQDALAKIPKEL 352
>gi|167902837|ref|ZP_02490042.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei NCTC
13177]
Length = 339
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAT-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|226356731|ref|YP_002786471.1| tRNA-dihydrouridine synthase A [Deinococcus deserti VCD115]
gi|226318721|gb|ACO46717.1| putative tRNA-dihydrouridine synthase A [Deinococcus deserti
VCD115]
Length = 346
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 191/338 (56%), Gaps = 11/338 (3%)
Query: 5 QYLPP-WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LP SVAPMMDWTD H R R +++ LYTEM+ I++ G+ +R L F+
Sbjct: 9 QTLPAHRLSVAPMMDWTDRHCRVFHRTLTRRTLLYTEMVTTGAILH--GDRERHLGFNRV 66
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ LA+ T +A Y YDEINLNCGCPS +V+ G FG LM P V
Sbjct: 67 EHPVALQLGGSDPAALAECTRMAEDYGYDEINLNCGCPSDRVSS-GSFGACLMGTPDVVA 125
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
A+ + T +PV+VK RIG+DD DSY L F+ V + + + FI+H+RKA L+G+S
Sbjct: 126 RAVEAMRGVTRLPVTVKHRIGIDDLDSYEHLTRFVRTVEA-AGCQTFIVHARKAWLSGLS 184
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+YE L DFP LT LNGG+ + + AL A VM+GRAAYQ P
Sbjct: 185 PKENREIPPLRYEVVEQLKADFPHLTVVLNGGVLDLRQAQGAL-NWADGVMIGRAAYQTP 243
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L D I+G + +TRR+ +E + Y + G +P R +MK L F +
Sbjct: 244 -YVLAAADHEIFGEAAVPVTRREAIEAFLPY---VAGQLAAGQPLNR-MMKHTLGLFAGQ 298
Query: 304 PGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
PG +KR + + +P VLD+
Sbjct: 299 PGARHWKRTLSEQGHRDGAGLEVVRAALEGVPAEVLDA 336
>gi|320335164|ref|YP_004171875.1| hypothetical protein [Deinococcus maricopensis DSM 21211]
gi|319756453|gb|ADV68210.1| TIM-barrel protein, yjbN family [Deinococcus maricopensis DSM
21211]
Length = 340
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 12/335 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPM+DWTD H R RLI++H LYTEM+ I++ G+ R L+FSP++HP+
Sbjct: 9 PHTLSVAPMLDWTDRHCRAFHRLITRHTLLYTEMITTGAILH--GDEARHLSFSPQEHPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS+ LA+ A Y Y E+NLN GCPS +V +G FG LM P V +
Sbjct: 67 ALQLGGSDPVALAECARRAEGYGYAEVNLNVGCPSDRVQ-NGRFGACLMATPDVVARGVE 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ T +PV+VK RIG+DD DSY L F+ V+ + FI+H+RKA L+G+SP EN
Sbjct: 126 AMRGATGLPVTVKHRIGIDDLDSYELLTAFVRTVAD-AGCETFIVHARKAWLSGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE L DFP LTF LNGG+ ++DE LR VM+GR AY NP Y L
Sbjct: 185 REIPPLRYEVVRQLKMDFPQLTFVLNGGVKSLDEAETHLRS-VDGVMIGREAYGNP-YLL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D ++G TRR+VVE Y + +L ++ V K L F + G
Sbjct: 243 ALADARLFGDAHVVPTRREVVEGLIGYAEEMLA----RDVYLSRVTKHALGLFAGQAGAR 298
Query: 308 LFKRK-ADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
+KR ++ A+ V+ L + + +PD+VLD+
Sbjct: 299 GWKRTISERAYLPGAGVE-VLRDAMACVPDAVLDT 332
>gi|157963384|ref|YP_001503418.1| tRNA-dihydrouridine synthase A [Shewanella pealeana ATCC 700345]
gi|157848384|gb|ABV88883.1| TIM-barrel protein, yjbN family [Shewanella pealeana ATCC 700345]
Length = 328
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 186/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHYRYFARLMSSQTLLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 67 LGGSNPVDLAACAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAECVTAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + + FIIH+RKA L G+SP ENR I
Sbjct: 126 QVVDIPVTVKTRIGIDEQDSYEFLTQFIDTVKA-AGCEEFIIHARKAWLQGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P+L ++NGG+ T++E L+ VMVGR AYQNP Y L V
Sbjct: 185 PPLDYERVYQLKRDYPELNISINGGVKTLEECQTHLQH-LDGVMVGREAYQNP-YILAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G + ++R V+EK Y + L G + + + ++ F E G+ +++
Sbjct: 243 DQKLCGIDAPVMSRDAVLEKLLPYIEKHLQQGG----RLNHISRHIIGLFQGEVGSRVWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|254258242|ref|ZP_04949296.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
gi|254216931|gb|EET06315.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
Length = 339
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|76809017|ref|YP_333391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710b]
gi|76578470|gb|ABA47945.1| dihydrouridine synthase [Burkholderia pseudomallei 1710b]
Length = 442
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 112 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 169
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 170 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 228
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ F++H+R A+L G+SP EN
Sbjct: 229 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAAAG-CDVFVVHARNAILKGLSPKEN 287
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 288 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 345
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 346 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 382
>gi|53723486|ref|YP_102906.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 23344]
gi|124383650|ref|YP_001026373.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126449152|ref|YP_001080353.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|167894436|ref|ZP_02481838.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 7894]
gi|254199845|ref|ZP_04906211.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|254206173|ref|ZP_04912525.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|254358573|ref|ZP_04974846.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
gi|52426909|gb|AAU47502.1| dihydrouridine synthase [Burkholderia mallei ATCC 23344]
gi|124291670|gb|ABN00939.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126242022|gb|ABO05115.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|147749441|gb|EDK56515.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|147753616|gb|EDK60681.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|148027700|gb|EDK85721.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
Length = 339
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|16762924|ref|NP_458541.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144411|ref|NP_807753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213051927|ref|ZP_03344805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424511|ref|ZP_03357308.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582871|ref|ZP_03364697.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213614451|ref|ZP_03371277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647516|ref|ZP_03377569.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824651|ref|ZP_06544178.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378962333|ref|YP_005219819.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|38604946|sp|Q8Z1T1.1|DUSA_SALTI RecName: Full=tRNA-dihydrouridine synthase A
gi|25329941|pir||AB1016 conserved hypothetical protein STY4439 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505231|emb|CAD09227.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140049|gb|AAO71613.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356205|gb|AEZ47966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 332
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDTDPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + I D
Sbjct: 300 ARQWRRYLSENAHKAGADAAVLEQALKLIADK 331
>gi|343511553|ref|ZP_08748712.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
gi|342797755|gb|EGU33394.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
Length = 326
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 188/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ ++HP+VLQ
Sbjct: 7 FSIAPMLDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGD---FLAYNEQEHPLVLQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNTADLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DDHDSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 DVVDIPVTVKTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF L +NGG+ T+ E L K VMVGR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQLKKDFAHLVIAVNGGVKTLQEAQEHL-KHLDGVMVGREAYQNP-YILAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G R QVVE+ Y + L +N ++ + + +L F + PG ++
Sbjct: 241 DQLIFGLDKPVKKRTQVVEEMYPYIEQQL----SNGAYLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + +E + IP +
Sbjct: 297 RHISENAHKPGSGIEVVEAALAKIPKEL 324
>gi|53719465|ref|YP_108451.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei K96243]
gi|126438522|ref|YP_001058864.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126452196|ref|YP_001066108.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
gi|167719732|ref|ZP_02402968.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei DM98]
gi|167738727|ref|ZP_02411501.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 14]
gi|167815950|ref|ZP_02447630.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 91]
gi|167911080|ref|ZP_02498171.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 112]
gi|52209879|emb|CAH35851.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|126218015|gb|ABN81521.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126225838|gb|ABN89378.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
Length = 339
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|336125336|ref|YP_004567384.1| NIFR3-like protein [Vibrio anguillarum 775]
gi|335343059|gb|AEH34342.1| NIFR3-like protein [Vibrio anguillarum 775]
Length = 326
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+
Sbjct: 4 PCKLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGD---FLAYNEEEHPV 60
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN +LA +LA Y YDEINLN GCPS +V +G FG LM +P+ V + ++
Sbjct: 61 ALQLGGSNPQDLAHCAKLAQQYGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVA 119
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ + ++PV+VK RIG+DD DSY L DFI VS F IH+RKA L+G+SP EN
Sbjct: 120 AMKSVVDIPVTVKTRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKEN 179
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL Y Y L +DFP L +NGG+ T+ EV+ L+ VM+GR AYQ+P Y L
Sbjct: 180 REIPPLDYSRAYQLKKDFPHLVIAVNGGVKTLAEVSEHLQH-LDGVMIGREAYQSP-YLL 237
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPG 305
VD I+G + R Q++E+ Y + L G+Y + + + +L F + PG
Sbjct: 238 AEVDQTIFGMDTPIKKRSQIIEEMFPYIERQLAQGSY------LGHITRHMLGMFQNMPG 291
Query: 306 NGLFKR 311
++R
Sbjct: 292 ARQWRR 297
>gi|260914683|ref|ZP_05921149.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
gi|260631282|gb|EEX49467.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
Length = 328
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 195/327 (59%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + LAFSPE++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLAFSPEENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ ++A Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGSNPTQLAQCAKIAEQRGYAEINLNVGCPSDRVQ-NGMFGACLMGKADLVAECINAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 EVVDIPVTVKTRIGIDDLDSYEFLCDFVQKVHQ-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPQLIMSINGGIKTIEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ S +T R+ VEK Y + L G Y N+ +++ +L F S G
Sbjct: 246 DQALFDPTSPIVTPREAVEKMFPYIEQQLTQGVYLNH------MVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R KA A + + SF+E
Sbjct: 300 WRRYLSENAHKAGAGLEVVEQALSFIE 326
>gi|89093370|ref|ZP_01166319.1| NIFR3-like protein [Neptuniibacter caesariensis]
gi|89082349|gb|EAR61572.1| NIFR3-like protein [Oceanospirillum sp. MED92]
Length = 328
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 187/301 (62%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPMMDWTD H R R++S++A LYTEM+ +I+ + DRFL ++ E+ P+ LQ
Sbjct: 12 FTVAPMMDWTDRHCRYFHRILSQNAVLYTEMVTTGALIHAEA--DRFLRYNREEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LA+ T++A Y Y+E+NLN GCPS +V + G LM P+ V E + +
Sbjct: 70 LGGSNPEDLAQCTKMAEDYGYNEVNLNVGCPSDRVQNN-MIGACLMAHPQLVSECLEKMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK R G+DD DSY +L F+ V S + FIIH+RKA+L G+SP ENR I
Sbjct: 129 AAVDIPVTVKHRQGIDDMDSYEELVQFVDTVRQ-SGCKVFIIHARKAILQGLSPKENRDI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKYE+ Y + ++FP+L +NGGI T+DE + L+ VM+GR AYQNP Y L V
Sbjct: 188 PPLKYEWVYQIKQEFPELEVHINGGIKTIDECHTHLQH-VDGVMLGREAYQNP-YLLADV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YGA S ++R+ Y I P + V++ +L FH++ G F+
Sbjct: 246 DREFYGADSEKISRKAAALAMVPY---IEQQMEQGVP-LNHVVRHMLGLFHAQRGGKQFR 301
Query: 311 R 311
R
Sbjct: 302 R 302
>gi|37681156|ref|NP_935765.1| tRNA-dihydrouridine synthase A [Vibrio vulnificus YJ016]
gi|326423833|ref|NP_760320.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
gi|38604852|sp|Q8CWK7.2|DUSA_VIBVU RecName: Full=tRNA-dihydrouridine synthase A
gi|37199907|dbj|BAC95736.1| NifR3/Smm1 family protein [Vibrio vulnificus YJ016]
gi|319999203|gb|AAO09847.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
Length = 326
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ S RRQ+VE+ Y + L N ++ + + +L F + PG ++
Sbjct: 241 DQELFGSQSPIKKRRQIVEEMYPYIEQQLA----NGAYLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGIEVLQQALAKIPQEL 324
>gi|417320900|ref|ZP_12107441.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
gi|328472365|gb|EGF43235.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
Length = 326
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 192/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|261210364|ref|ZP_05924658.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
gi|260840422|gb|EEX66988.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
Length = 335
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 189/333 (56%), Gaps = 10/333 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+ +Y P FSVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++
Sbjct: 7 SSKYAPCRFSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQ 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V
Sbjct: 64 EEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
E ++ + + ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+
Sbjct: 123 AECVAAMRSVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL Y Y + RDFP LT +NGG+ T++E L+ VM+GR AYQ+
Sbjct: 183 SPKENREIPPLDYSRAYQIKRDFPHLTIAVNGGVKTLEEAKLHLQH-LDGVMIGREAYQS 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P Y L VD I+ + R QV+ + Y + L + H+ + + +L F +
Sbjct: 242 P-YLLAEVDQQIFELDTPVKKRSQVIHEMLPYIEREL----SQGTHLGHMTRHMLGLFQN 296
Query: 303 EPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
PG ++R +E+ + IP
Sbjct: 297 MPGARQWRRHISENAHKQGAGLEVVEQALAKIP 329
>gi|110834374|ref|YP_693233.1| tRNA-dihydrouridine synthase A [Alcanivorax borkumensis SK2]
gi|110647485|emb|CAL16961.1| TIM-barrel protein, yjbN family [Alcanivorax borkumensis SK2]
Length = 348
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 195/331 (58%), Gaps = 10/331 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q L SVAPMMDWT YR LARLI++H LYTEM+ A+ I++ G+ DRFL F+ E+
Sbjct: 28 QPLDRRLSVAPMMDWTTRDYRFLARLITRHTLLYTEMVVAQAILH--GDRDRFLDFNDEE 85
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+ LA+AT +A Y YDEINLN GCPS +V G G LM +P+ V
Sbjct: 86 HPVALQLGGSDPQQLAQATRIAGDYGYDEINLNVGCPSDRVQ-QGKIGAILMAEPELVAR 144
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + A VPV+VK RIG+DD D Y+ L F+ ++ + S IH+RKA+L+G+SP
Sbjct: 145 CVEAMQAEVTVPVTVKTRIGIDDQDDYDFLYRFVDRMEA-SGCTSLTIHARKAILSGLSP 203
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y+ YA+ FP + LNGG+ T++EV+ + + VM+GR AYQNP+
Sbjct: 204 KENRDIPPLIYQRAYAIKHAFPHIEIILNGGVKTLNEVHEHMGE-VDGVMIGREAYQNPY 262
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
+ L D ++G + +R+ + E++ Y + G+ H ++ +L+ F +P
Sbjct: 263 F-LAEADRVVFGDDHAIPSRQTIAEQFLPYVERRYA-LGHAPKH---SLRHILNLFQGQP 317
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
G F+R T L + + +P
Sbjct: 318 GARRFRRHLSENMHKPGTTPQVLMDALSQLP 348
>gi|445495230|ref|ZP_21462274.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
gi|444791391|gb|ELX12938.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
Length = 341
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 6/301 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R IS+H WLYTEM+ ++Y G+++R L F+ E+HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHCRVFHRHISQHTWLYTEMVTTGALVY--GDVERHLRFNDEEHPVALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 78 LGGSDPADLATSAKLGEKWGYDEINLNCGCPSERVQ-KGAFGACLMAEPQLVADCVKAMR 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++ V+VK R+G+D +SY+ + DF+ V+ T FI+H+R A+L G+SP ENR I
Sbjct: 137 DAVSIDVTVKHRVGIDQTESYDFVRDFVGTVAEAGCTT-FIVHARNAILKGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKYE+ Y L RDFPD +NGGI T E++ L K VM+GR AY NP+ G
Sbjct: 196 PPLKYEFAYQLKRDFPDFEIIINGGIKTEAEIDEHL-KHLDGVMLGREAYHNPFVMAG-F 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + +R +V+E Y A L +G + + + + +L PG F+
Sbjct: 254 DQRYYGDSRAPKSREEVIEAMIPYIQAQLALHGAHGLKLNTITRHMLGLMTGLPGARAFR 313
Query: 311 R 311
+
Sbjct: 314 Q 314
>gi|429220848|ref|YP_007182492.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
gi|429131711|gb|AFZ68726.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
Length = 339
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 193/338 (57%), Gaps = 15/338 (4%)
Query: 7 LPP-WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPMMDWTD H R RLI++ A LYTEM+ I++ G+ R L +SPE+H
Sbjct: 4 LPPHTLSVAPMMDWTDRHDRFFLRLITRRALLYTEMVTTGAILH--GDKGRHLDYSPEEH 61
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +A + Y EINLN GCPS +V G FG LM P V
Sbjct: 62 PLALQLGGSDPAALAECARIAQDWGYAEINLNVGCPSDRVQS-GMFGACLMAHPDLVARC 120
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + A VPV+VK R+G+DD DSY L F+ VS + FI+H+RKA L+G+SP
Sbjct: 121 VEAMRAVVGVPVTVKHRLGIDDLDSYEHLTRFVQTVSG-AGCETFIVHARKAWLSGLSPK 179
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL+YE L DFP LT LNGGI ++++ A L + A VM+GR AYQNP Y
Sbjct: 180 ENREIPPLRYEVVRQLKVDFPHLTVVLNGGIKSLEDSKAHL-EWADGVMIGREAYQNP-Y 237
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L D ++G + TRR+VVE Y + L ++ + + +L F + G
Sbjct: 238 MLALADAVLFGDDAPARTRREVVEALLPYVEVQLA----RDVYLSRITRHILGLFAGQSG 293
Query: 306 NGLFKRKADAAFQTCK--TVKSFLEETIVAIPDSVLDS 341
+KR Q C+ L + IPDSVLD+
Sbjct: 294 ARAWKRTLSE--QACQPGADAGVLRAALSQIPDSVLDA 329
>gi|238892522|ref|YP_002917256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238544838|dbj|BAH61189.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 331
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARAQLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|193067849|ref|ZP_03048815.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
gi|192958824|gb|EDV89261.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
Length = 339
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+VLQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVVLQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|256821809|ref|YP_003145772.1| yjbN family TIM-barrel protein [Kangiella koreensis DSM 16069]
gi|256795348|gb|ACV26004.1| TIM-barrel protein, yjbN family [Kangiella koreensis DSM 16069]
Length = 330
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 188/301 (62%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD H R RLI+KHA LYTEM+ II+ G +R L F+ E+HP+ +Q
Sbjct: 9 ICIAPMLDWTDRHQRRFMRLITKHAVLYTEMITTGAIIH--GGAERHLKFNQEEHPVAVQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA ++ + YDEINLN GCPS +V +G FG LM +P+ V E MS +A
Sbjct: 67 LGGSDPKDLAHCAKICEDFGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAECMSAMA 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D+ DSY L FI V S + + FIIH+RKA L+G+SP +NR I
Sbjct: 126 NVVDVPVTVKSRIGIDELDSYEHLHHFINTVQS-AGVKTFIIHARKAWLSGLSPKQNREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y + +DFP+L +NGG+NT+D+ + K A VM+GR AY NP++ L V
Sbjct: 185 PPLRYDIAYQVKKDFPELEIIVNGGVNTLDQAEDHM-KHADGVMIGREAYHNPYF-LAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG +R ++ +Y +Y + L + ++ + + +L F ++P L++
Sbjct: 243 DNRFYGKDYDIPSRIEIAREYMVYIQSQL----DQDVYLGHMTRHILGLFFAQPKGKLWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|84999912|ref|XP_954677.1| hypothetical protein [Theileria annulata]
gi|65305672|emb|CAI73997.1| hypothetical protein, conserved [Theileria annulata]
Length = 408
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 191/326 (58%), Gaps = 24/326 (7%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQQGNLDRFLAFSPEQHPI 67
P +APM+D T +R RL+++ L+TEM A ++I + ++ R+L F +HPI
Sbjct: 84 PSLQIAPMLDVTYLQFRQFMRLLTRKTQLWTEMFVASSLINASEESVSRWLKFEENEHPI 143
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
V Q+GG+ + L +A + + YDEINLN GCPSP+V+G GCFG SLM + + V + +
Sbjct: 144 VAQLGGNCPETLVEAGRILKKFGYDEINLNVGCPSPRVSGKGCFGASLMREKELVRDIVH 203
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +PV+VK R+GVD+ DSY + DF+ VS S HFIIHSRKA L GI+P +N
Sbjct: 204 NMIKELEIPVTVKTRLGVDESDSYEFVKDFVSTVSQ-SGCEHFIIHSRKAWLKGINPKKN 262
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK----------GAHHVMVGR 237
RT+PPL+YE + L RDFP L FT+NGG T++ + AL + VM+GR
Sbjct: 263 RTVPPLQYEKVFRLQRDFPHLKFTINGGFKTMESILDALNSENVDTDNNPHKLNGVMIGR 322
Query: 238 AAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGN---------NR 286
AY+NP L +VD IYG P + TRR ++E + + A Y N
Sbjct: 323 LAYENPC-ILSNVDKIIYGVENPDTCYTRRILLEVFYLKFIANFQNYANYIDENVEETAN 381
Query: 287 PHVRDVMKPLLHFFHSEPGNGLFKRK 312
++ ++KP+L FH E GN +F+RK
Sbjct: 382 MNISLIVKPILGVFHGEQGNKIFRRK 407
>gi|254179915|ref|ZP_04886514.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
gi|184210455|gb|EDU07498.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
Length = 339
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 175/277 (63%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRY-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D YGA + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYGASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|294139225|ref|YP_003555203.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
gi|293325694|dbj|BAJ00425.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
Length = 329
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 188/301 (62%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR LAR++S LYTEM+ II+ +G+ +LA++ E++P+ LQ
Sbjct: 15 FSIAPMLDWTDRHYRYLARIMSTELLLYTEMVTTGAIIHGKGD---YLAYNSEENPLALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V G FG LM +PK V E ++ +
Sbjct: 72 LGGSNHHDLATCAKLAAERGYDEINLNVGCPSDRVQS-GRFGACLMAEPKLVAECVTAMK 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L +F+ VS + FI+H+RKA L G+SP +NR I
Sbjct: 131 QVVDIPVTVKTRIGIDDQDSYEFLSEFVDTVSDVG-CDTFIVHARKAWLQGLSPKQNREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L +D+PDL ++NGG+ T+DE + L+ VMVGR AYQNP Y L V
Sbjct: 190 PPLDYQRVYRLKKDYPDLHISINGGVKTLDECHEHLQH-IDGVMVGREAYQNP-YILAEV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ L+R V++K+ Y + L G + + + + + EPG+ ++
Sbjct: 248 DQRLCGSNKPVLSRDAVLDKFIPYIEKHLMDGGR----LNHITRHMTGMYQGEPGSRAWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|91794580|ref|YP_564231.1| tRNA-dihydrouridine synthase A [Shewanella denitrificans OS217]
gi|91716582|gb|ABE56508.1| TIM-barrel protein, yjbN family [Shewanella denitrificans OS217]
Length = 327
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 183/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR AR++S A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 6 FSIAPMLDWTDKHYRYFARIMSTKALLYTEMVTTGAILHGRGD---YLAYNTEEHPLALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 63 LGGSNPVDLAACAKLAFERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V++ F IH+RKA L G+SP ENR I
Sbjct: 122 QVVDIPVTVKTRIGIDEQDSYEFLTKFIETVAA-KGCDDFTIHARKAWLQGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y+ Y L RDFP L +NGGI T+ E L + VMVGR AYQNP Y L V
Sbjct: 181 PLLDYDRVYQLKRDFPKLNIGINGGIKTLAEAKLHLTQ-LDGVMVGREAYQNP-YLLAEV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
DT +YG ++R QV+EK Y +A L T G + + + ++ F G+ ++
Sbjct: 239 DTQLYGVKRDIISREQVIEKMLPYIEAHLKTGGR----LNHITRHMIGLFQGLAGSRQWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|386032623|ref|YP_005952536.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|424828429|ref|ZP_18253157.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|449060398|ref|ZP_21738057.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|339759751|gb|AEJ95971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|414705834|emb|CCN27538.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|448873903|gb|EMB08971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 332
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 249 DREIFGVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|444918632|ref|ZP_21238696.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
gi|444709577|gb|ELW50585.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
Length = 358
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RLISK LYTEM+ I+Y G+ R L FS E+HP+ LQ+GGS+
Sbjct: 1 MMDWTDRHDRYFLRLISKRTRLYTEMVTTGAILY--GDKPRHLDFSQEEHPLALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +A + YDE+NLN GCPS +V +G FG LM P V + + T +
Sbjct: 59 PAQLAECVRIAEQWGYDEVNLNVGCPSDRVQ-NGMFGACLMAKPDLVARCVEAMRGATRL 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK R+G+DD DSY L F+ VS + FI+H+RKA L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRLGIDDLDSYELLTHFVRTVSG-AGCDTFIVHARKAFLQGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E+ L DFP LT +LNGG+ ++ E A L + A VM+GR AYQNP Y L D+ I+
Sbjct: 177 EWVRQLKTDFPHLTLSLNGGVKSLAEARAHL-EWADGVMIGREAYQNP-YMLALADSVIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + TRRQVVE Q Y + +L ++ V + +L F PG ++R
Sbjct: 235 GETAPAPTRRQVVESLQPYVEELLA----RGEYLSRVTRHILGLFAGLPGARGWRRVLSE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLD 340
L + + +P VLD
Sbjct: 291 RANKPGAGLEVLRDALAQVPAHVLD 315
>gi|77166407|ref|YP_344932.1| tRNA-dihydrouridine synthase A [Nitrosococcus oceani ATCC 19707]
gi|254435191|ref|ZP_05048698.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
gi|76884721|gb|ABA59402.1| tRNA-U16,U17-dihydrouridine synthase [Nitrosococcus oceani ATCC
19707]
gi|207088302|gb|EDZ65574.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
Length = 337
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 185/303 (61%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+WTD H R RLIS A LYTEM+ A +I+ GN RFLA+ +HP+ LQ
Sbjct: 22 ISVAPMMEWTDRHCRYFLRLISHRALLYTEMVTAGALIH--GNRARFLAYHKSEHPLALQ 79
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA ++A Y +DE+NLN GCPS +V G FG LM +P+ V E ++ +A
Sbjct: 80 LGGSHPEELALCAQMAEDYGFDEVNLNVGCPSNRVQS-GRFGACLMAEPELVAECVAAMA 138
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PV+VK RIG+D+ DSY L FI V+ + R FIIH+RKA L G+SP ENR
Sbjct: 139 QATQIPVTVKTRIGIDEQDSYEALDHFISTVAQ-AGCRTFIIHARKAWLQGLSPKENREK 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ + +DFP LT +NGGI T++E++ L + VM+GRAAY NP Y L V
Sbjct: 198 PPLRYDVVRTIKQDFPQLTVIINGGITTLEEISEHL-ELLDGVMIGRAAYHNP-YLLAQV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D YG LTR +++E + Y + G Y N+ + + +L F +PG
Sbjct: 256 DRNFYGDFHPFLTRHEIIEAFLPYVAEQLVQGVYLNH------MTRHILGLFQGQPGARA 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|428774197|ref|YP_007165985.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
gi|428688476|gb|AFZ48336.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium stanieri PCC
7202]
Length = 333
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 187/305 (61%), Gaps = 11/305 (3%)
Query: 8 PPWF-SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
PP+ SVAPMMD++D H+R + R ++K + LYTEM+ ++ II+ G+ + L FSP + P
Sbjct: 7 PPYLVSVAPMMDYSDRHFRYIMRQMTKKSLLYTEMINSQAIIH--GDRPKLLNFSPAEKP 64
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ +Q+GG N LA+ ++ + YDEINLN GCPS +V G FG LM P V + +
Sbjct: 65 VAIQLGGDNPQQLAECAKIVEDWGYDEINLNVGCPSARVQS-GNFGACLMAQPHKVAQCI 123
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ + N+PV+VK RIG+DD DSY Q+ +F+ K+ + + + F++H+RKA L G+SP E
Sbjct: 124 AAMNQAVNIPVTVKHRIGIDDQDSYEQMANFV-KIVAQAGCQRFVVHARKAWLQGLSPKE 182
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+YE Y L RDFP L +NGGI T++++ A VM+GR A NP Y
Sbjct: 183 NRHIPPLRYEDVYRLKRDFPHLIIEINGGITTLEQIKAQF-PLVDGVMIGRVACDNP-YL 240
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L +D IYG + TR +V+E Y D +G+ + +M+ LL F +PG
Sbjct: 241 LASIDQEIYGDDTPIPTREEVIESVLDYVD----FWGDRHVKLNSIMRHLLQIFAGQPGT 296
Query: 307 GLFKR 311
++KR
Sbjct: 297 KIWKR 301
>gi|410941943|ref|ZP_11373735.1| tRNA dihydrouridine synthase A [Leptospira noguchii str.
2006001870]
gi|410782937|gb|EKR71936.1| tRNA dihydrouridine synthase A [Leptospira noguchii str.
2006001870]
Length = 347
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 198/329 (60%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ +++ G+ R L++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVLH--GDRHRLLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + LAK++++ Y Y EINLN GCPS +V G FG LM P+ V E S +
Sbjct: 73 GGDDPKALAKSSKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMKTPEKVAELTSAMDI 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++P++VKCRIG+ +++ LC FI V + R FI+H+R A+L G++PA+NR +P
Sbjct: 132 SVSIPITVKCRIGIPGKETFEDLCRFIECVRQ-TGVRRFIVHARIAILGGLTPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVESLKKEFPDLLIEINGGIRTLTSIREKLEKN-DGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G S L+RR+++ + + Y + ++ N +PH V++ +L F+ E G F++
Sbjct: 249 SLFFGESLSPLSRREILLRMKDYIEEVILKEKNGKPH--HVLRHMLGLFYGEKGARSFRK 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 307 ILTEGMYSGYS-KDLLFKAIQEISNDSLD 334
>gi|331675581|ref|ZP_08376328.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
gi|331067189|gb|EGI38597.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
Length = 345
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDVDPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|432878609|ref|ZP_20095891.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
gi|431416474|gb|ELG98960.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
Length = 345
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y P FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YSPSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|258625982|ref|ZP_05720847.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
gi|258581730|gb|EEW06614.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
Length = 339
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 19 LSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 76 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 135 SVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ T++E L+ VM+GR AYQNP Y L V
Sbjct: 195 PPLDYPRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 253 DQQIFGLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 308
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 309 RHISENAHKSGAGLEVVEQALAKIP 333
>gi|432790833|ref|ZP_20024951.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|432796823|ref|ZP_20030853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
gi|431344148|gb|ELG31102.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|431346808|gb|ELG33702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
Length = 345
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 190/328 (57%), Gaps = 14/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
++R + LE+ + + D
Sbjct: 316 WRRYLSENAHKAGADINVLEQALKLVAD 343
>gi|320155187|ref|YP_004187566.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|319930499|gb|ADV85363.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 326
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FL+++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLSYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVATMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ S RRQ+VE+ Y + L N ++ + + +L F + PG ++
Sbjct: 241 DQELFGSQSPIKKRRQIVEEMYPYIEQQLA----NGAYLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGIEVLQQALAKIPQEL 324
>gi|168263436|ref|ZP_02685409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417369857|ref|ZP_12140887.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|205348025|gb|EDZ34656.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353583306|gb|EHC43699.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 332
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 190/331 (57%), Gaps = 11/331 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILASVDREIFGADTTDTDPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPD 336
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVAD 330
>gi|186476399|ref|YP_001857869.1| YjbN family TIM-barrel protein [Burkholderia phymatum STM815]
gi|184192858|gb|ACC70823.1| TIM-barrel protein, yjbN family [Burkholderia phymatum STM815]
Length = 333
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 174/273 (63%), Gaps = 8/273 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R+ R +S+HAWLYTEM+ +I+ G++ R LAF+ ++ P+ LQ+
Sbjct: 13 SVAPMMDWTDRHCRSFHRTLSRHAWLYTEMVTTGALIH--GDVARHLAFTADEAPVALQL 70
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS ++LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 71 GGSEREDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPELVADCVKAMRD 129
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+VPV+VK RIGVDD + Y + DF+ ++ + FI+H+R A+L G+SP ENR IP
Sbjct: 130 AVSVPVTVKHRIGVDDVEDYAFVRDFVGTIAD-AGCDVFIVHARNAILKGLSPKENREIP 188
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PLKY+Y Y L RDFP L +NGGI T+DEV L+ VM+GR AY NP + L VD
Sbjct: 189 PLKYDYAYRLKRDFPQLEIIINGGIKTLDEVETHLQH-VDGVMLGREAYHNP-FVLADVD 246
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
YG+ + TR + + Y A L GTY
Sbjct: 247 ARFYGSTDAAPTREEAEAQLIEYCRAELARGTY 279
>gi|56416043|ref|YP_153118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617371|ref|YP_001591336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552533|ref|ZP_02346286.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197364970|ref|YP_002144607.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|416423360|ref|ZP_11690749.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433040|ref|ZP_11696566.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416442269|ref|ZP_11702356.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447349|ref|ZP_11705794.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416455473|ref|ZP_11711098.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457699|ref|ZP_11712301.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416482962|ref|ZP_11723950.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494314|ref|ZP_11728126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416499548|ref|ZP_11730859.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416506579|ref|ZP_11734797.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416543311|ref|ZP_11752093.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416559764|ref|ZP_11760856.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568949|ref|ZP_11765137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416580782|ref|ZP_11772173.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587601|ref|ZP_11776137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592012|ref|ZP_11778833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599971|ref|ZP_11783918.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416607446|ref|ZP_11788517.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615753|ref|ZP_11793665.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618197|ref|ZP_11794478.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416633858|ref|ZP_11802199.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644324|ref|ZP_11806707.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646520|ref|ZP_11807786.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656140|ref|ZP_11813116.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416669559|ref|ZP_11819525.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416676793|ref|ZP_11822022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416693218|ref|ZP_11826628.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708650|ref|ZP_11833512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416709933|ref|ZP_11834038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720356|ref|ZP_11842070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726058|ref|ZP_11846119.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416731500|ref|ZP_11849415.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416735649|ref|ZP_11851533.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745080|ref|ZP_11857038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759652|ref|ZP_11864479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763974|ref|ZP_11867648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770480|ref|ZP_11871832.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417377338|ref|ZP_12146282.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|418482816|ref|ZP_13051829.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486738|ref|ZP_13055684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496396|ref|ZP_13062830.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501035|ref|ZP_13067426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503593|ref|ZP_13069952.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508252|ref|ZP_13074555.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418523688|ref|ZP_13089676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|56130300|gb|AAV79806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366735|gb|ABX70503.1| hypothetical protein SPAB_05226 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197096447|emb|CAR62053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205322837|gb|EDZ10676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|322615399|gb|EFY12319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618459|gb|EFY15348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622129|gb|EFY18979.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627200|gb|EFY23992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631160|gb|EFY27924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637622|gb|EFY34323.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643604|gb|EFY40159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648339|gb|EFY44798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654648|gb|EFY50968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659608|gb|EFY55851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662183|gb|EFY58399.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666071|gb|EFY62249.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672491|gb|EFY68602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675920|gb|EFY71991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680405|gb|EFY76443.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684701|gb|EFY80705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195965|gb|EFZ81131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197105|gb|EFZ82246.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201777|gb|EFZ86841.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213302|gb|EFZ98104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215672|gb|EGA00416.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222095|gb|EGA06481.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226506|gb|EGA10712.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229131|gb|EGA13260.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236259|gb|EGA20335.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237621|gb|EGA21682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241713|gb|EGA25742.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248140|gb|EGA32077.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254530|gb|EGA38341.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258410|gb|EGA42087.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259690|gb|EGA43324.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265963|gb|EGA49459.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270405|gb|EGA53853.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353590260|gb|EHC48829.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|363555177|gb|EHL39409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363575485|gb|EHL59336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363576956|gb|EHL60782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366056826|gb|EHN21131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062698|gb|EHN26927.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366067567|gb|EHN31717.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366071921|gb|EHN36013.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366072663|gb|EHN36751.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366079507|gb|EHN43489.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366831210|gb|EHN58076.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372208000|gb|EHP21496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 332
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|416530644|ref|ZP_11745107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534891|ref|ZP_11747379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416550057|ref|ZP_11755735.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417471394|ref|ZP_12167386.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418790328|ref|ZP_13346105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794887|ref|ZP_13350602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796080|ref|ZP_13351772.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|353622983|gb|EHC72385.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363550270|gb|EHL34598.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363566997|gb|EHL51010.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363569120|gb|EHL53084.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|392758711|gb|EJA15577.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392760313|gb|EJA17151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392770949|gb|EJA27670.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 332
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|16767493|ref|NP_463108.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991432|ref|ZP_02572531.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|374981747|ref|ZP_09723070.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378447562|ref|YP_005235194.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378453175|ref|YP_005240535.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378702086|ref|YP_005184044.1| hypothetical protein SL1344_4179 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986919|ref|YP_005250075.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991512|ref|YP_005254676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703483|ref|YP_005245211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498823|ref|YP_005399512.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028484|ref|ZP_16374783.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033534|ref|ZP_16379602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427557379|ref|ZP_18930106.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427575211|ref|ZP_18934696.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427597005|ref|ZP_18939614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427621382|ref|ZP_18944496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427645326|ref|ZP_18949384.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658495|ref|ZP_18954104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663766|ref|ZP_18959011.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427681699|ref|ZP_18963902.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801900|ref|ZP_18969388.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|38604955|sp|Q8ZKH4.1|DUSA_SALTY RecName: Full=tRNA-dihydrouridine synthase A
gi|16422801|gb|AAL23067.1| putative TIM-barrel enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205330107|gb|EDZ16871.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261249341|emb|CBG27204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996554|gb|ACY91439.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160735|emb|CBW20266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915348|dbj|BAJ39322.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223111|gb|EFX48181.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323132582|gb|ADX20012.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332991059|gb|AEF10042.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465644|gb|AFD61047.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414011328|gb|EKS95293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414012607|gb|EKS96521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414012831|gb|EKS96738.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414026899|gb|EKT10156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027440|gb|EKT10679.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030156|gb|EKT13291.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414040922|gb|EKT23520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414041624|gb|EKT24189.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046045|gb|EKT28398.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055052|gb|EKT36973.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414060828|gb|EKT42320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 332
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|30064638|ref|NP_838809.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|56480527|ref|NP_709871.2| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 301]
gi|30042897|gb|AAP18620.1| hypothetical protein S3574 [Shigella flexneri 2a str. 2457T]
gi|56384078|gb|AAN45578.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 339
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|238913008|ref|ZP_04656845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQDECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|204927346|ref|ZP_03218548.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122023|ref|YP_007472271.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204324011|gb|EDZ09206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911027|gb|AGF82833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|432856293|ref|ZP_20083733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
gi|431396119|gb|ELG79605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
Length = 345
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDVDPVAVVRAMYPYIEHELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|197247584|ref|YP_002149157.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|417515016|ref|ZP_12178665.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|440763290|ref|ZP_20942332.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766472|ref|ZP_20945462.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771036|ref|ZP_20949961.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211287|gb|ACH48684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|353632051|gb|EHC79212.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|436420321|gb|ELP18186.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422620|gb|ELP20452.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422882|gb|ELP20705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|417387391|ref|ZP_12151838.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353600498|gb|EHC56371.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|170728528|ref|YP_001762554.1| tRNA-dihydrouridine synthase A [Shewanella woodyi ATCC 51908]
gi|169813875|gb|ACA88459.1| TIM-barrel protein, yjbN family [Shewanella woodyi ATCC 51908]
Length = 331
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 185/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR LARL+S LYTEM+ II+ +G+ +LA++ E+HP+ LQ
Sbjct: 17 FSIAPMLDWTDRHYRYLARLMSAELLLYTEMVTTGAIIHGKGD---YLAYNEEEHPLALQ 73
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA + A YDEINLN GCPS +V G FG LM +P V E ++ +
Sbjct: 74 LGGSNPHDLAICAKQAVERGYDEINLNVGCPSDRVQS-GRFGACLMAEPSLVAECVTAMR 132
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ DSY L +F+ V + FI+H+RKA L G+SP ENR I
Sbjct: 133 AVADIPVTVKTRIGIDEQDSYEFLTEFVETVRD-AGCDTFIVHARKAWLQGLSPKENREI 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+PDL+ ++NGG+ +++E L K VMVGR AYQNP Y L V
Sbjct: 192 PPLDYDRVYQLKRDYPDLSISINGGVKSLEECKVHLVK-LDGVMVGREAYQNP-YILAKV 249
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G L+R V+EK+ Y + L G + + + + F E G+ +++
Sbjct: 250 DQQLCGLDKPVLSRDAVLEKFIPYIEKHLQAGG----RLNHITRHMTGLFQGEVGSRIWR 305
Query: 311 R 311
R
Sbjct: 306 R 306
>gi|194426795|ref|ZP_03059348.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|194415131|gb|EDX31400.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|195183268|dbj|BAG66809.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H-]
Length = 345
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 185/308 (60%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A+ YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEAHGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|59710914|ref|YP_203690.1| tRNA-dihydrouridine synthase A [Vibrio fischeri ES114]
gi|59479015|gb|AAW84802.1| NifR3/Smm1 family protein [Vibrio fischeri ES114]
Length = 328
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 184/319 (57%), Gaps = 17/319 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 9 FSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN+ +L +LA YDE+NLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 66 LGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L F+ V F IH+RKA L+G+SP ENR I
Sbjct: 125 AVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +DFP L +NGGI T+ E L VM+GR AYQ+P Y L V
Sbjct: 185 PPLDYPRAYQIKKDFPQLIIAVNGGIKTLSEAKEHLEH-LDGVMIGREAYQSP-YLLAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ RR++VE Y + L N ++ + + +L F S PG ++
Sbjct: 243 DQQLFGSDKPIKKRREIVESMYPYIERQL----ENGAYLGHITRHMLGLFQSMPGARQWR 298
Query: 311 R-------KADAAFQTCKT 322
R K A + KT
Sbjct: 299 RYISENAHKPGAGIEVVKT 317
>gi|168236934|ref|ZP_02661992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736682|ref|YP_002117177.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712184|gb|ACF91405.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289961|gb|EDY29320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 345
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 188/332 (56%), Gaps = 10/332 (3%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 257 ILAAVDREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 312
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 313 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 344
>gi|218702713|ref|YP_002410342.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|386626991|ref|YP_006146719.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
gi|218372699|emb|CAR20575.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|349740727|gb|AEQ15433.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
Length = 345
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGVPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|441506422|ref|ZP_20988393.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
gi|441425888|gb|ELR63379.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
Length = 346
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 14/327 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+H LYTEM+ II+ + + +LA++ E+HP+VLQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRQLSEHVQLYTEMVTTGAIIHGKAD---YLAYNEEEHPLVLQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 84 LGGSNPAELAQCAKLAQERGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAELVAQCVAAMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PVSVK RIG+D+ DSY L DFI VS F IH+RKA L G+SP ENR I
Sbjct: 143 EVVDIPVSVKTRIGIDEQDSYQFLTDFIGTVSEKGGCSDFTIHARKAWLQGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ T++EV A L VMVGR AYQNP Y + +
Sbjct: 203 PPLDYPRVYQLKKDFAHLTMAINGGVKTMEEVEAHLEH-LDGVMVGREAYQNP-YMMADL 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G+ RR+VVE Y + L GTY N+ + + +L F + PG
Sbjct: 261 DQRLFGSNKPVKKRREVVEAMFPYIERELAKGTYLNH------ISRHMLGLFQNMPGARQ 314
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIP 335
++R + LE+ + IP
Sbjct: 315 WRRHISENAHKPGSGIEVLEQAMAKIP 341
>gi|419325896|ref|ZP_13867574.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
gi|378159970|gb|EHX20968.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
Length = 345
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 185/308 (60%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A+ YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEAHGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|197263333|ref|ZP_03163407.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241588|gb|EDY24208.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>gi|110807934|ref|YP_691454.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5 str. 8401]
gi|384545679|ref|YP_005729743.1| yjbN family TIM-barrel protein [Shigella flexneri 2002017]
gi|417709427|ref|ZP_12358449.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|424840305|ref|ZP_18264942.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
gi|110617482|gb|ABF06149.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603466|gb|ADA76450.1| TIM-barrel protein, yjbN family [Shigella flexneri 2002017]
gi|332998117|gb|EGK17721.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|383469357|gb|EID64378.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
Length = 347
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 87 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 146 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 264 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 317
Query: 309 FKR 311
++R
Sbjct: 318 WRR 320
>gi|415797083|ref|ZP_11497925.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
gi|323162189|gb|EFZ48052.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
Length = 330
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 8 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 241
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 295
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 296 PGARQWRR 303
>gi|437835925|ref|ZP_20845495.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435299608|gb|ELO75734.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEACGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|194446261|ref|YP_002043494.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418807868|ref|ZP_13363425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811602|ref|ZP_13367127.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816205|ref|ZP_13371698.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822438|ref|ZP_13377851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828487|ref|ZP_13383521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832566|ref|ZP_13387503.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418833855|ref|ZP_13388766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841232|ref|ZP_13396051.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418848468|ref|ZP_13403206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854520|ref|ZP_13409188.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|194404924|gb|ACF65146.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|392777697|gb|EJA34379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778169|gb|EJA34849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392788113|gb|EJA44651.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392790426|gb|EJA46924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392790521|gb|EJA47016.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392797196|gb|EJA53514.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392805763|gb|EJA61878.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392808561|gb|EJA64609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392822768|gb|EJA78572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824375|gb|EJA80161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|198244614|ref|YP_002218138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207859397|ref|YP_002246048.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375121668|ref|ZP_09766835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957799|ref|YP_005215286.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|418847343|ref|ZP_13402104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418859768|ref|ZP_13414359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864917|ref|ZP_13419433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|421359864|ref|ZP_15810151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362308|ref|ZP_15812563.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366288|ref|ZP_15816492.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373220|ref|ZP_15823361.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377635|ref|ZP_15827730.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380350|ref|ZP_15830413.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385699|ref|ZP_15835720.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389299|ref|ZP_15839283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393839|ref|ZP_15843782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400104|ref|ZP_15849995.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402594|ref|ZP_15852451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407490|ref|ZP_15857298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412363|ref|ZP_15862118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416418|ref|ZP_15866138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420567|ref|ZP_15870244.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427100|ref|ZP_15876724.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428966|ref|ZP_15878567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436344|ref|ZP_15885876.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421440629|ref|ZP_15890105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445435|ref|ZP_15894861.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447540|ref|ZP_15896939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421886671|ref|ZP_16317845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|436624284|ref|ZP_20514958.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436698052|ref|ZP_20518275.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436795787|ref|ZP_20522518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807028|ref|ZP_20527142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813042|ref|ZP_20531327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846750|ref|ZP_20539520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436850714|ref|ZP_20541382.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859829|ref|ZP_20547715.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866727|ref|ZP_20552156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871151|ref|ZP_20554549.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880927|ref|ZP_20560526.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889814|ref|ZP_20565480.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898136|ref|ZP_20570147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903862|ref|ZP_20574131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913077|ref|ZP_20578644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917495|ref|ZP_20581003.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925178|ref|ZP_20585652.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937528|ref|ZP_20592655.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436944730|ref|ZP_20597140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436947067|ref|ZP_20598224.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959007|ref|ZP_20603458.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436973524|ref|ZP_20610787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987555|ref|ZP_20616101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436994953|ref|ZP_20619117.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437006458|ref|ZP_20622695.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437017141|ref|ZP_20626198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437027814|ref|ZP_20630521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437041703|ref|ZP_20635663.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047723|ref|ZP_20639070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056212|ref|ZP_20643747.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069008|ref|ZP_20651022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077966|ref|ZP_20655824.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083808|ref|ZP_20659375.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089230|ref|ZP_20662026.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437106080|ref|ZP_20667220.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120160|ref|ZP_20671298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129117|ref|ZP_20675743.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137020|ref|ZP_20680088.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437144740|ref|ZP_20685211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151618|ref|ZP_20689425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163836|ref|ZP_20696814.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167610|ref|ZP_20698881.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174616|ref|ZP_20702261.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437187466|ref|ZP_20710006.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437235734|ref|ZP_20713864.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437258921|ref|ZP_20716821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271113|ref|ZP_20723474.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274146|ref|ZP_20725147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284399|ref|ZP_20729570.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307422|ref|ZP_20734815.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437333401|ref|ZP_20742337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437337522|ref|ZP_20743277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360475|ref|ZP_20748283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412006|ref|ZP_20753179.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439735|ref|ZP_20757354.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437460086|ref|ZP_20761295.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437475694|ref|ZP_20766867.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493315|ref|ZP_20772089.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437515892|ref|ZP_20777999.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437536148|ref|ZP_20781659.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437558984|ref|ZP_20785400.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574563|ref|ZP_20789835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591341|ref|ZP_20794769.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437610848|ref|ZP_20801159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615406|ref|ZP_20802212.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437642835|ref|ZP_20808283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437663317|ref|ZP_20813928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437685253|ref|ZP_20819019.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697203|ref|ZP_20822766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437713357|ref|ZP_20827338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736658|ref|ZP_20832849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748959|ref|ZP_20833763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437805846|ref|ZP_20839380.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437902940|ref|ZP_20849931.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438088731|ref|ZP_20860021.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438103842|ref|ZP_20865650.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438109709|ref|ZP_20867560.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438136523|ref|ZP_20874437.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445139554|ref|ZP_21384431.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445151741|ref|ZP_21390512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445167291|ref|ZP_21394359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445227985|ref|ZP_21404518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445341125|ref|ZP_21416641.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445347558|ref|ZP_21419213.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360696|ref|ZP_21423627.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|197939130|gb|ACH76463.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206711200|emb|CAR35576.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625935|gb|EGE32280.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357208410|gb|AET56456.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|379984067|emb|CCF90118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392808422|gb|EJA64472.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392828895|gb|EJA84580.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829377|gb|EJA85054.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|395983498|gb|EJH92690.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990633|gb|EJH99763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991297|gb|EJI00422.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997052|gb|EJI06094.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395998956|gb|EJI07982.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396004336|gb|EJI13319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396016097|gb|EJI24966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396016184|gb|EJI25052.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017911|gb|EJI26775.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396025883|gb|EJI34657.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396030910|gb|EJI39639.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396031000|gb|EJI39728.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396042678|gb|EJI51299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044595|gb|EJI53191.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396045706|gb|EJI54298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052595|gb|EJI61101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396053704|gb|EJI62198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396059828|gb|EJI68276.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396065738|gb|EJI74111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396066122|gb|EJI74487.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074842|gb|EJI83126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434940545|gb|ELL47161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962021|gb|ELL55254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963196|gb|ELL56319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968984|gb|ELL61710.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975467|gb|ELL67755.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977488|gb|ELL69606.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434987228|gb|ELL78870.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434987571|gb|ELL79211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993859|gb|ELL85243.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|434998886|gb|ELL90099.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435001265|gb|ELL92383.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004449|gb|ELL95412.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006805|gb|ELL97664.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435013684|gb|ELM04306.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435017957|gb|ELM08434.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435024750|gb|ELM14955.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031337|gb|ELM21309.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035092|gb|ELM24939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435037821|gb|ELM27604.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435040543|gb|ELM30299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435053716|gb|ELM43153.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435055052|gb|ELM44471.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058085|gb|ELM47441.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059047|gb|ELM48338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063298|gb|ELM52451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070606|gb|ELM59589.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435082225|gb|ELM70849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435084867|gb|ELM73433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435085969|gb|ELM74516.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435092972|gb|ELM81314.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435098076|gb|ELM86327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099725|gb|ELM87917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435102578|gb|ELM90682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435106892|gb|ELM94889.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115377|gb|ELN03144.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435121259|gb|ELN08805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127377|gb|ELN14739.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127464|gb|ELN14825.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135039|gb|ELN22149.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138739|gb|ELN25764.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435140410|gb|ELN27371.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144519|gb|ELN31360.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151384|gb|ELN38036.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157152|gb|ELN43614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435157727|gb|ELN44165.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435165585|gb|ELN51611.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435170439|gb|ELN56187.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176408|gb|ELN61787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185396|gb|ELN70263.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435186499|gb|ELN71330.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435187736|gb|ELN72479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435189028|gb|ELN73675.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435196976|gb|ELN81293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435203871|gb|ELN87608.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210595|gb|ELN93836.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435212364|gb|ELN95362.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222010|gb|ELO04148.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435223560|gb|ELO05594.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228452|gb|ELO09896.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435229138|gb|ELO10528.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239405|gb|ELO19894.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435240232|gb|ELO20648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435245792|gb|ELO25821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252278|gb|ELO31875.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435254935|gb|ELO34318.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262414|gb|ELO41504.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435266742|gb|ELO45475.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435267111|gb|ELO45823.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435275676|gb|ELO53753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435276384|gb|ELO54395.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285391|gb|ELO62793.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435286707|gb|ELO63956.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435301929|gb|ELO77928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435311884|gb|ELO85920.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435317405|gb|ELO90456.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435320695|gb|ELO93214.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435322858|gb|ELO95045.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435332182|gb|ELP03142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444854188|gb|ELX79254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444855224|gb|ELX80273.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444865568|gb|ELX90337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444866642|gb|ELX91366.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871796|gb|ELX96190.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876809|gb|ELY00968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884961|gb|ELY08770.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|418866047|ref|ZP_13420511.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|392840561|gb|EJA96096.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKIRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|392307186|ref|ZP_10269720.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas citrea NCIMB
1889]
Length = 337
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 190/328 (57%), Gaps = 15/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KHA LYTEM+ I++ +G+ +LAF + P+ LQ
Sbjct: 23 FSVAPMLDWTDKHCRTFHRKLTKHAVLYTEMITTGAILFGKGD---YLAFGEHEMPVALQ 79
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ + A Y Y+EINLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 80 LGGSDPKALAECAKRAGEYGYNEINLNVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMK 138
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VK RIG+D+ DSY L I + S FIIH+RKA L G+SP ENR +
Sbjct: 139 AEVEIPVTVKTRIGIDEQDSYEFLTALI-EASQQVGCDDFIIHARKAWLKGLSPKENREV 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y L +DF DL ++NGG+ T+D+ L AH VM+GR AY NP Y L
Sbjct: 198 PPLDYPRVYQLKKDFADLHISINGGVKTLDDCQQHL---AHLDGVMIGREAYSNP-YMLS 253
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +YG P+ +R +VV Y + + T G N H + + +L F S+PG
Sbjct: 254 QVDELLYGEPAFTQSRHEVVRSMYDYFEVQM-TQGANFWH---IARHMLGIFQSQPGGRA 309
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
F+R S +E+ + +P+
Sbjct: 310 FRRHLSENGHKQGADISVMEKALACVPE 337
>gi|419812623|ref|ZP_14337487.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385154505|gb|EIF16517.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
Length = 339
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTMLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|168243640|ref|ZP_02668572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448858|ref|YP_002048234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386589569|ref|YP_006085969.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417354256|ref|ZP_12130739.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417362043|ref|ZP_12135791.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417491911|ref|ZP_12173108.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417535457|ref|ZP_12188924.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418514870|ref|ZP_13081064.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|419731159|ref|ZP_14258083.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736639|ref|ZP_14263468.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737299|ref|ZP_14264111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742757|ref|ZP_14269428.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748402|ref|ZP_14274899.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572491|ref|ZP_16018140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574344|ref|ZP_16019967.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580873|ref|ZP_16026426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582440|ref|ZP_16027977.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194407162|gb|ACF67381.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337347|gb|EDZ24111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|353562279|gb|EHC28970.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353582408|gb|EHC43063.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353630230|gb|EHC77842.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353656757|gb|EHC97411.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|366077677|gb|EHN41687.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|381290979|gb|EIC32234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381292289|gb|EIC33493.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381306014|gb|EIC46912.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313400|gb|EIC54185.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381314392|gb|EIC55162.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796613|gb|AFH43695.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517037|gb|EJW24442.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402518914|gb|EJW26281.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402525196|gb|EJW32488.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402533108|gb|EJW40292.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 332
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|115351522|ref|YP_773361.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria AMMD]
gi|115281510|gb|ABI87027.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia ambifaria AMMD]
Length = 344
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 176/285 (61%), Gaps = 9/285 (3%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R +++ WLYTEM+ +++ G+ R LA
Sbjct: 1 MSAPSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLA 58
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 59 FTPNESPVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 117
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + +VPV+VK RIGVD + Y + DF+ KV+ + F++H+R A+L
Sbjct: 118 QLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGKVAE-AGCETFVVHARNAIL 176
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR A
Sbjct: 177 KGLSPKENREIPPLKYDYAYQLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREA 235
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
Y NP Y L VD YG+ ++ TR + K Y A L GTY
Sbjct: 236 YHNP-YVLAGVDARFYGSTAAVPTREEAEAKLIEYCAAELKRGTY 279
>gi|200388599|ref|ZP_03215211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605697|gb|EDZ04242.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 332
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|336312633|ref|ZP_08567580.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
gi|335863806|gb|EGM68931.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
Length = 339
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 187/301 (62%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 21 FSIAPMLDWTDRHYRYFARLMSTNALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 78 LGGSNPSELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L+G+SP ENR I
Sbjct: 137 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLSGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VM+GR AYQNP Y L V
Sbjct: 196 PPLDYDRAYQLKRDYPTLNISINGGITSLEQAKTHLQH-LDGVMMGREAYQNP-YILAQV 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+P + ++R V+E Y +A L + G + + + ++ F PG ++
Sbjct: 254 DQMLCGSPKAVISREAVIETMLPYIEAHLQSGGR----LNHITRHMIGLFQGLPGARAWR 309
Query: 311 R 311
R
Sbjct: 310 R 310
>gi|331650053|ref|ZP_08351126.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|419863045|ref|ZP_14385606.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|427807268|ref|ZP_18974335.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|432394795|ref|ZP_19637605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|432614135|ref|ZP_19850284.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443615558|ref|YP_007379414.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
gi|331040998|gb|EGI13155.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|388343546|gb|EIL09478.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|412965450|emb|CCK49383.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|430912545|gb|ELC33718.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|431145456|gb|ELE47106.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443420066|gb|AGC84970.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
Length = 345
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|254490145|ref|ZP_05103336.1| TIM-barrel protein, yjbN family [Methylophaga thiooxidans DMS010]
gi|224464631|gb|EEF80889.1| TIM-barrel protein, yjbN family [Methylophaga thiooxydans DMS010]
Length = 327
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 185/301 (61%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD R + RLIS+H+ LYTEM+ +IY G+ DRFLA ++P+ LQ
Sbjct: 13 LSVAPMLDWTDRDCRYMLRLISRHSLLYTEMVTTGALIY--GDRDRFLAHEALEYPLALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS ++LA+ ++ YDEINLN GCPS +V G FG L+ +P V E ++ +
Sbjct: 71 LGGSEPNDLAQCAKMGEDAGYDEINLNVGCPSDRVQS-GRFGACLLAEPDVVAEGVAAMQ 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK R+G+D+HDSY L DFI KVS+ + FI+H+RKA L G+SP ENR +
Sbjct: 130 NQVSIPVTVKTRLGIDEHDSYEFLTDFIKKVSA-AGCDTFILHARKAWLKGLSPKENRDV 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y + +DFP L +NGGINT++E L+ VM+GRA Y NP + L
Sbjct: 189 PPLNYDRVYQVKQDFPHLHIDINGGINTLEEAQLHLQH-VDGVMMGRAIYHNP-FLLAQA 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D AI+G +S LTR QVVE Y I RP ++ + + +L F + G ++
Sbjct: 247 DEAIFGHDASVLTRHQVVEAMLPY---IEKRMAQGRP-LKSITRHMLGVFQGQAGARRWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>gi|168784662|ref|ZP_02809669.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|168798291|ref|ZP_02823298.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|261225167|ref|ZP_05939448.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255581|ref|ZP_05948114.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|416319470|ref|ZP_11662022.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416328425|ref|ZP_11668185.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|419072340|ref|ZP_13617933.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|419083382|ref|ZP_13628820.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|419095770|ref|ZP_13641039.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|419101535|ref|ZP_13646716.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|419106665|ref|ZP_13651781.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|420272590|ref|ZP_14774932.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|420278224|ref|ZP_14780497.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|420284688|ref|ZP_14786908.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|420295243|ref|ZP_14797347.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|420301158|ref|ZP_14803196.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|420312442|ref|ZP_14814363.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|420318167|ref|ZP_14820029.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|421815159|ref|ZP_16250851.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|421826963|ref|ZP_16262309.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|424086814|ref|ZP_17823274.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|424093232|ref|ZP_17829131.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|424099926|ref|ZP_17835150.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|424106124|ref|ZP_17840824.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|424131049|ref|ZP_17863927.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|424137366|ref|ZP_17869776.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|424336356|ref|ZP_17898537.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|424465330|ref|ZP_17915614.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|424471550|ref|ZP_17921324.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|424483824|ref|ZP_17932779.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|424490020|ref|ZP_17938529.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|424496739|ref|ZP_17944220.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|424517029|ref|ZP_17961581.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|424523145|ref|ZP_17967224.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|424559791|ref|ZP_18001160.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|424566113|ref|ZP_18007091.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|424584222|ref|ZP_18023844.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|425106972|ref|ZP_18509261.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|425134666|ref|ZP_18535494.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|425146938|ref|ZP_18546907.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|425158951|ref|ZP_18558190.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|425183121|ref|ZP_18580793.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|425196152|ref|ZP_18592897.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|425202631|ref|ZP_18598814.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|425202998|ref|ZP_18599160.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|425245851|ref|ZP_18639134.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|425257842|ref|ZP_18650313.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|425264095|ref|ZP_18656062.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|425297571|ref|ZP_18687665.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|425314257|ref|ZP_18703401.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|425326383|ref|ZP_18714685.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|425375795|ref|ZP_18760409.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|425388680|ref|ZP_18772216.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|425395410|ref|ZP_18778492.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|425401465|ref|ZP_18784147.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|425407562|ref|ZP_18789759.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|428949936|ref|ZP_19022183.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|428968634|ref|ZP_19039313.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|428974385|ref|ZP_19044672.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|429005071|ref|ZP_19073105.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|429035578|ref|ZP_19101074.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|429041686|ref|ZP_19106749.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|429057941|ref|ZP_19122198.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|429070193|ref|ZP_19133603.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444927832|ref|ZP_21247076.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444933457|ref|ZP_21252446.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444938898|ref|ZP_21257611.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444944527|ref|ZP_21262995.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444982946|ref|ZP_21299834.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444998870|ref|ZP_21315354.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|445004425|ref|ZP_21320798.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|445014945|ref|ZP_21331033.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|445020804|ref|ZP_21336751.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|445026240|ref|ZP_21342046.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|445037097|ref|ZP_21352606.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
gi|189375043|gb|EDU93459.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|189379226|gb|EDU97642.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|320190826|gb|EFW65476.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|326341906|gb|EGD65689.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|377905841|gb|EHU70100.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|377922418|gb|EHU86404.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|377936091|gb|EHU99885.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|377936617|gb|EHV00411.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|377942952|gb|EHV06675.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|390636437|gb|EIN16021.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|390637605|gb|EIN17147.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|390655447|gb|EIN33390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|390658220|gb|EIN36019.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|390679983|gb|EIN55839.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|390691203|gb|EIN65962.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|390710719|gb|EIN83721.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|390723479|gb|EIN96074.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|390754989|gb|EIO24539.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|390756577|gb|EIO26082.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|390761239|gb|EIO30536.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|390784577|gb|EIO52144.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|390792323|gb|EIO59677.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|390796476|gb|EIO63752.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|390799262|gb|EIO66435.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|390803893|gb|EIO70880.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|390820925|gb|EIO87170.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|390839958|gb|EIP04034.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|390842198|gb|EIP06064.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|390879811|gb|EIP40551.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|390889585|gb|EIP49310.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|390897500|gb|EIP56820.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|390905059|gb|EIP64010.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|390914786|gb|EIP73317.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|408061712|gb|EKG96220.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|408062719|gb|EKG97220.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|408093861|gb|EKH26909.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|408105171|gb|EKH37371.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|408111993|gb|EKH43683.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|408133493|gb|EKH63390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|408156706|gb|EKH84906.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|408169757|gb|EKH97002.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|408176509|gb|EKI03357.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|408209314|gb|EKI33913.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|408223192|gb|EKI46984.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|408236855|gb|EKI59731.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|408287627|gb|EKJ06484.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|408302509|gb|EKJ20013.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|408303695|gb|EKJ21144.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|408315132|gb|EKJ31461.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|408320768|gb|EKJ36839.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|408543932|gb|EKK21405.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|408577476|gb|EKK53049.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|408587861|gb|EKK62485.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|408598120|gb|EKK72080.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|427203743|gb|EKV74041.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|427216870|gb|EKV85959.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|427223476|gb|EKV92220.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|427254977|gb|EKW21253.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|427279883|gb|EKW44283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|427288468|gb|EKW52099.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|427308480|gb|EKW70861.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|427314711|gb|EKW76747.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444534568|gb|ELV14789.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444535507|gb|ELV15578.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444544890|gb|ELV23876.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444553672|gb|ELV31276.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444588248|gb|ELV63633.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444602466|gb|ELV77207.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|444611520|gb|ELV85847.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|444619373|gb|ELV93414.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|444625634|gb|ELV99454.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|444634484|gb|ELW07956.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|444641079|gb|ELW14320.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|375004122|ref|ZP_09728457.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353073460|gb|EHB39225.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 332
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTISINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|432619360|ref|ZP_19855456.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
gi|431150292|gb|ELE51349.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
Length = 331
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDVDPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|425320239|ref|ZP_18708993.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
gi|408234364|gb|EKI57389.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
Length = 331
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 9 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 66 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 125 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 185 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 243 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 296
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 297 PGARQWRR 304
>gi|416779333|ref|ZP_11876338.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
gi|320638805|gb|EFX08451.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
Length = 339
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 17 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 73
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 74 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 132
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 133 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 192
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 193 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 250
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 251 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 304
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 305 PGARQWRR 312
>gi|428213630|ref|YP_007086774.1| tRNA-U16,U17-dihydrouridine synthase [Oscillatoria acuminata PCC
6304]
gi|428002011|gb|AFY82854.1| tRNA-U16,U17-dihydrouridine synthase [Oscillatoria acuminata PCC
6304]
Length = 341
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 182/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD HYR RLI+K LYTEM+ II+ G+ + L FSPE+ P+ LQ
Sbjct: 26 LSVAPMMDRTDRHYRYFMRLITKRTLLYTEMITTAAIIH--GDRQKLLGFSPEEKPLSLQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ T +A + YDEINLN GCPS +V +G FG LM P+ V + +
Sbjct: 84 LGGDDPQELAECTRIAEDFGYDEINLNVGCPSSRVQ-NGNFGACLMAQPERVARGIEAMQ 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PV+VK RIG+D D Y + +F+ ++ S S R F +H+RKA L+G++P ENRTI
Sbjct: 143 RVTKLPVTVKHRIGIDARDRYEDMREFV-RIISESGCRRFTVHARKAWLSGLNPKENRTI 201
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L ++FP+L +NGGI T+++V L++ VM+GRAAY NP Y
Sbjct: 202 PPLRYEDVYQLKQEFPELWIEINGGITTMEQVREHLQQ-VDAVMIGRAAYDNP-YLFASC 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G L+R QVVE+ Y D L N + + + +L F +PG+ +K
Sbjct: 260 DRDIFGEEIPPLSRHQVVEQMLPYIDHWLAQGSN----LNQISRHILQLFTGQPGSRAWK 315
Query: 311 R 311
R
Sbjct: 316 R 316
>gi|315497697|ref|YP_004086501.1| tim-barrel protein, yjbn family [Asticcacaulis excentricus CB 48]
gi|315415709|gb|ADU12350.1| TIM-barrel protein, yjbN family [Asticcacaulis excentricus CB 48]
Length = 343
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 183/331 (55%), Gaps = 11/331 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R ++K A LYTEM+ + II G+ + L FS +HP+ LQ
Sbjct: 9 FSVAPMMDWTDRHCRAFHRTLTKGALLYTEMVTSRAII--NGDRQKLLGFSEVEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS D LA ++A + YDE+NLNCGCPS +V G FG LM +P+ V + M +
Sbjct: 67 LGGSEPDELAACAKIAEDWGYDEVNLNCGCPSDRVQS-GSFGACLMREPQLVADCMQAMG 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PV+VKCRIGVDD D L + + + R FI+H+RKA L G+SP ENR I
Sbjct: 126 EATRLPVTVKCRIGVDDQDEETALFALV-EACRQAGVRTFIVHARKAWLKGLSPKENRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE YAL R PDLT ++NGGI T+ E L K VM+GRAAY P LG V
Sbjct: 185 PPLNYELVYALKRAHPDLTISINGGIGTLQEAETHL-KHVDGVMLGRAAYHEPAL-LGQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ + + + +E Y Y A L H+ + + +L H PG F+
Sbjct: 243 DRRIFSGEAD-VGPFEALEAYSPYVQAQLAAG----VHLPAITRHMLGLMHGLPGARAFR 297
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
R L++ I A+ D++ S
Sbjct: 298 RILTVGSIQPGAGIEVLDQAIEAVRDAMAAS 328
>gi|38604722|sp|Q7UBC5.2|DUSA_SHIFL RecName: Full=tRNA-dihydrouridine synthase A
Length = 330
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
>gi|420283680|ref|ZP_14785905.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|420301698|ref|ZP_14803733.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444977557|ref|ZP_21294612.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
gi|390778347|gb|EIO46105.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|390820291|gb|EIO86597.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444587450|gb|ELV62901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|417543207|ref|ZP_12194442.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657123|gb|EHC97661.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 332
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVVVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|330816761|ref|YP_004360466.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
gi|327369154|gb|AEA60510.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 168/264 (63%), Gaps = 6/264 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R+L R IS+H WLYTEM+ +++ G++ R LAF PE+ P+ LQ
Sbjct: 15 ISVAPMMDWTDRHCRSLHRSISRHTWLYTEMVTTGALLH--GDVARHLAFMPEEAPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS ++LAK+ L + YDEINLNCGCPS +V G FG LM +P V + + +
Sbjct: 73 LGGSEPEDLAKSARLGENWGYDEINLNCGCPSERVQ-RGAFGACLMNEPALVADCVKAMR 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L G+SP ENR I
Sbjct: 132 DAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCEVFIVHARNAILKGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L +DFPDL +NGGI T+DEV L+ VM+GR AY NP + L V
Sbjct: 191 PPLKYDYAYRLKQDFPDLEILINGGITTLDEVETHLQH-VDGVMLGREAYHNP-FVLAEV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D YGA TR ++ ++ Y
Sbjct: 249 DARFYGAARPAPTREEIEDRLIAY 272
>gi|432551644|ref|ZP_19788379.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
gi|431087965|gb|ELD93877.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|428935408|ref|ZP_19008884.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|426300609|gb|EKV62885.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
Length = 332
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 72 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGTFGACLMGNAPLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DAVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNP-DILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 249 DREIFGVAGADADPVAVVRAMYPYIERELSKGTYLGH------ITRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|432916245|ref|ZP_20121217.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|432923572|ref|ZP_20126126.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
gi|431450457|gb|ELH30943.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|431451570|gb|ELH32042.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|419974839|ref|ZP_14490255.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|420028064|ref|ZP_14542048.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032652|ref|ZP_14546465.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397344806|gb|EJJ37936.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397392208|gb|EJJ84012.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397397139|gb|EJJ88820.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
Length = 331
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|415857056|ref|ZP_11531885.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|417704087|ref|ZP_12353190.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|417714396|ref|ZP_12363352.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|417719249|ref|ZP_12368136.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|417725059|ref|ZP_12373851.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|417730310|ref|ZP_12378999.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|417735422|ref|ZP_12384064.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|417740171|ref|ZP_12388742.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|417745259|ref|ZP_12393779.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|417830660|ref|ZP_12477195.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|418258885|ref|ZP_12882011.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
gi|420322314|ref|ZP_14824136.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|420333272|ref|ZP_14834914.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|420343712|ref|ZP_14845176.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|420375879|ref|ZP_14875691.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|313648753|gb|EFS13193.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|332751993|gb|EGJ82386.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|332752162|gb|EGJ82554.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|332753251|gb|EGJ83632.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|332764755|gb|EGJ94984.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|332999047|gb|EGK18636.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|332999143|gb|EGK18730.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|333014208|gb|EGK33564.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|333014419|gb|EGK33770.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|335572601|gb|EGM58972.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|391245817|gb|EIQ05083.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|391246770|gb|EIQ06028.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|391263439|gb|EIQ22445.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|391308582|gb|EIQ66278.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|397895072|gb|EJL11506.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|168760895|ref|ZP_02785902.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|170682797|ref|YP_001746438.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|191167463|ref|ZP_03029277.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209921533|ref|YP_002295617.1| tRNA-dihydrouridine synthase A [Escherichia coli SE11]
gi|217325395|ref|ZP_03441479.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|301019187|ref|ZP_07183385.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|386698928|ref|YP_006162765.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|386711998|ref|YP_006175719.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387509503|ref|YP_006161759.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|407467057|ref|YP_006786501.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484221|ref|YP_006781371.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484767|ref|YP_006772313.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416308837|ref|ZP_11655290.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416343439|ref|ZP_11677443.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|416813155|ref|ZP_11891054.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416823667|ref|ZP_11895656.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|417149502|ref|ZP_11989593.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|417157170|ref|ZP_11994794.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|417167417|ref|ZP_12000303.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|417173676|ref|ZP_12003472.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|417279832|ref|ZP_12067137.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|417293632|ref|ZP_12080911.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|417584457|ref|ZP_12235241.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|417620745|ref|ZP_12271141.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|417637011|ref|ZP_12287212.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|417807749|ref|ZP_12454675.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417835490|ref|ZP_12481929.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867571|ref|ZP_12512607.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|417944826|ref|ZP_12588065.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|417977734|ref|ZP_12618514.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|418270660|ref|ZP_12888421.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|418305679|ref|ZP_12917473.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|418943089|ref|ZP_13496313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419048150|ref|ZP_13595076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|419059981|ref|ZP_13606775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|419123414|ref|ZP_13668349.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|419139483|ref|ZP_13684267.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|419145169|ref|ZP_13689890.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|419161932|ref|ZP_13706418.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|419167022|ref|ZP_13711464.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|419173038|ref|ZP_13716904.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|419183613|ref|ZP_13727193.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|419189212|ref|ZP_13732709.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|419347900|ref|ZP_13889260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|419394384|ref|ZP_13935175.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|419919489|ref|ZP_14437641.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|419925921|ref|ZP_14443740.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|419929982|ref|ZP_14447646.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|419935807|ref|ZP_14452875.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|419938219|ref|ZP_14455059.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|419950991|ref|ZP_14467191.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|422761367|ref|ZP_16815125.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|422772606|ref|ZP_16826293.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|424458775|ref|ZP_17909846.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|424478022|ref|ZP_17927315.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|425189406|ref|ZP_18586655.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|425431515|ref|ZP_18812101.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|428962046|ref|ZP_19033301.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|428980803|ref|ZP_19050585.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|428992705|ref|ZP_19061671.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|429023447|ref|ZP_19089939.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|429047475|ref|ZP_19112165.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429829329|ref|ZP_19360300.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
gi|170520515|gb|ACB18693.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|189368570|gb|EDU86986.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|190902505|gb|EDV62240.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209914792|dbj|BAG79866.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217321616|gb|EEC30040.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|299882344|gb|EFI90555.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|320200820|gb|EFW75406.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|320654888|gb|EFX22849.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660736|gb|EFX28193.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|323940232|gb|EGB36425.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|324118621|gb|EGC12513.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|326346520|gb|EGD70254.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|339417777|gb|AEJ59449.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|340732070|gb|EGR61209.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340737645|gb|EGR71900.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920860|gb|EGT70465.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|342363423|gb|EGU27531.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|344192596|gb|EGV46686.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|345342640|gb|EGW75032.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|345368410|gb|EGX00408.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|345384293|gb|EGX14160.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|374361497|gb|AEZ43204.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|375321596|gb|EHS67417.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377887894|gb|EHU52368.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|377901048|gb|EHU65371.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|377960668|gb|EHV24147.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|377978281|gb|EHV41560.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|377988030|gb|EHV51211.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|378003044|gb|EHV66090.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|378005322|gb|EHV68326.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|378008943|gb|EHV71901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|378020383|gb|EHV83129.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|378022948|gb|EHV85629.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|378181512|gb|EHX42182.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|378232283|gb|EHX92384.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|383390455|gb|AFH15413.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|383407690|gb|AFH13933.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|386161723|gb|EIH23526.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|386165920|gb|EIH32440.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|386171539|gb|EIH43583.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|386176368|gb|EIH53847.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|386237548|gb|EII74493.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|386251820|gb|EIJ01512.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|388385029|gb|EIL46734.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|388387683|gb|EIL49293.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|388402536|gb|EIL63108.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|388403648|gb|EIL64152.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|388410787|gb|EIL70990.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|388415638|gb|EIL75560.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|390740474|gb|EIO11601.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|390764183|gb|EIO33397.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|397894258|gb|EJL10705.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|406779929|gb|AFS59353.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056518|gb|AFS76569.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063092|gb|AFS84139.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408100365|gb|EKH32871.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|408341112|gb|EKJ55583.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|427200589|gb|EKV71002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|427220916|gb|EKV89803.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|427237122|gb|EKW04666.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|427272745|gb|EKW37470.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|427295400|gb|EKW58508.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429250232|gb|EKY34897.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
Length = 339
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|28899501|ref|NP_799106.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260879420|ref|ZP_05891775.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260894695|ref|ZP_05903191.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260902033|ref|ZP_05910428.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|38604768|sp|Q87L85.1|DUSA_VIBPA RecName: Full=tRNA-dihydrouridine synthase A
gi|28807737|dbj|BAC60990.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087465|gb|EFO37160.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308089701|gb|EFO39396.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308109416|gb|EFO46956.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
Length = 326
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 192/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|157157144|ref|YP_001465549.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|157163519|ref|YP_001460837.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|417642085|ref|ZP_12292207.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
gi|157069199|gb|ABV08454.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|157079174|gb|ABV18882.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|345389602|gb|EGX19407.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
Length = 347
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 87 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 146 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 264 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 317
Query: 309 FKR 311
++R
Sbjct: 318 WRR 320
>gi|415785370|ref|ZP_11492920.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
gi|323155612|gb|EFZ41787.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
Length = 347
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 87 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 146 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 264 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 317
Query: 309 FKR 311
++R
Sbjct: 318 WRR 320
>gi|366158984|ref|ZP_09458846.1| tRNA-dihydrouridine synthase A [Escherichia sp. TW09308]
gi|432374629|ref|ZP_19617655.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
gi|430893024|gb|ELC15372.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
Length = 331
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|15834285|ref|NP_313058.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
Sakai]
gi|74314543|ref|YP_312962.1| tRNA-dihydrouridine synthase A [Shigella sonnei Ss046]
gi|170083506|ref|YP_001732826.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|193063063|ref|ZP_03044155.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218556606|ref|YP_002389520.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218697757|ref|YP_002405424.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218707670|ref|YP_002415189.1| tRNA -dihydrouridine synthase A [Escherichia coli UMN026]
gi|254163985|ref|YP_003047093.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|260846843|ref|YP_003224621.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|291285465|ref|YP_003502283.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300817967|ref|ZP_07098180.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300823590|ref|ZP_07103718.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300899835|ref|ZP_07118049.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300906360|ref|ZP_07124058.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300917303|ref|ZP_07133976.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300924312|ref|ZP_07140291.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300938186|ref|ZP_07152956.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300946621|ref|ZP_07160880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300957541|ref|ZP_07169748.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|301021575|ref|ZP_07185575.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|301302728|ref|ZP_07208857.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|301330578|ref|ZP_07223186.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301645037|ref|ZP_07245000.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|307312109|ref|ZP_07591746.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|309795855|ref|ZP_07690269.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|331644790|ref|ZP_08345907.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331665718|ref|ZP_08366612.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331670912|ref|ZP_08371746.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331680179|ref|ZP_08380838.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|378715002|ref|YP_005279895.1| yjbN family TIM-barrel protein [Escherichia coli KO11FL]
gi|386278658|ref|ZP_10056352.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386597433|ref|YP_006093833.1| yjbN family TIM-barrel protein [Escherichia coli DH1]
gi|386611456|ref|YP_006126942.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387623679|ref|YP_006131307.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|387885273|ref|YP_006315575.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|388479998|ref|YP_492192.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
W3110]
gi|404372969|ref|ZP_10978244.1| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|414578913|ref|ZP_11436071.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|415775768|ref|ZP_11487452.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|415831878|ref|ZP_11517429.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|415851830|ref|ZP_11528400.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|415864649|ref|ZP_11537673.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|415874338|ref|ZP_11541392.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|417127511|ref|ZP_11974951.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|417132710|ref|ZP_11977495.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|417141753|ref|ZP_11984605.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|417187164|ref|ZP_12012021.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|417238755|ref|ZP_12036179.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|417249758|ref|ZP_12041542.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|417261060|ref|ZP_12048553.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|417269156|ref|ZP_12056516.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|417273712|ref|ZP_12061057.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|417310661|ref|ZP_12097471.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|417583720|ref|ZP_12234514.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|417599494|ref|ZP_12250112.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|417610830|ref|ZP_12261315.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417615717|ref|ZP_12266162.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|417631546|ref|ZP_12281774.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|418960069|ref|ZP_13511964.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|419053914|ref|ZP_13600777.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|419065341|ref|ZP_13612045.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|419112114|ref|ZP_13657159.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|419117635|ref|ZP_13662637.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|419129077|ref|ZP_13673940.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|419151060|ref|ZP_13695702.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|419156579|ref|ZP_13701128.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|419194344|ref|ZP_13737778.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|419280846|ref|ZP_13823079.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|419292283|ref|ZP_13834361.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|419303099|ref|ZP_13845085.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|419309143|ref|ZP_13851027.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|419314102|ref|ZP_13855954.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|419352352|ref|ZP_13893673.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|419357838|ref|ZP_13899077.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|419362797|ref|ZP_13903997.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|419367977|ref|ZP_13909116.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|419372703|ref|ZP_13913802.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|419383646|ref|ZP_13924578.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|419388902|ref|ZP_13929756.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|419399518|ref|ZP_13940272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|419404760|ref|ZP_13945471.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|419409921|ref|ZP_13950600.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|419415486|ref|ZP_13956112.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|419805709|ref|ZP_14330838.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|420361454|ref|ZP_14862391.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|420366102|ref|ZP_14866955.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|420388436|ref|ZP_14887762.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|420394208|ref|ZP_14893445.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|421820906|ref|ZP_16256383.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|421827916|ref|ZP_16263248.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|422331517|ref|ZP_16412533.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422354931|ref|ZP_16435656.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|422776251|ref|ZP_16829905.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|422958043|ref|ZP_16970257.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|422990314|ref|ZP_16981086.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422997210|ref|ZP_16987972.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423002306|ref|ZP_16993057.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423005962|ref|ZP_16996707.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423012525|ref|ZP_17003255.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423021756|ref|ZP_17012460.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423026910|ref|ZP_17017604.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423032739|ref|ZP_17023425.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423035615|ref|ZP_17026291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040734|ref|ZP_17031402.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047420|ref|ZP_17038078.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055958|ref|ZP_17044764.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057963|ref|ZP_17046761.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703599|ref|ZP_17678031.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|423708364|ref|ZP_17682744.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|424080404|ref|ZP_17817337.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|424112734|ref|ZP_17846938.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|424124866|ref|ZP_17858141.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|424452613|ref|ZP_17904228.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|424528995|ref|ZP_17972685.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|424535138|ref|ZP_17978465.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|425100876|ref|ZP_18503591.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|425112954|ref|ZP_18514853.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|425117681|ref|ZP_18519448.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|425122396|ref|ZP_18524060.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|425128923|ref|ZP_18530069.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|425159409|ref|ZP_18558619.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|425171003|ref|ZP_18569455.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|425177043|ref|ZP_18575140.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|425214787|ref|ZP_18610168.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|425220869|ref|ZP_18615810.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|425227524|ref|ZP_18621967.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|425233673|ref|ZP_18627690.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|425239596|ref|ZP_18633294.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|425251985|ref|ZP_18644907.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|425275402|ref|ZP_18666774.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|425285955|ref|ZP_18676961.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|425413899|ref|ZP_18795638.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|425420221|ref|ZP_18801470.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|425425094|ref|ZP_18806232.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|427811850|ref|ZP_18978915.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|428955991|ref|ZP_19027759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|428986610|ref|ZP_19055976.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|428998598|ref|ZP_19067168.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|429011083|ref|ZP_19078450.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|429017496|ref|ZP_19084350.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|429029414|ref|ZP_19095364.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|429052887|ref|ZP_19117438.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|429063933|ref|ZP_19127872.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|429081140|ref|ZP_19144260.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429721797|ref|ZP_19256708.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773875|ref|ZP_19305884.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779060|ref|ZP_19311021.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782895|ref|ZP_19314815.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429788288|ref|ZP_19320170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429794726|ref|ZP_19326562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429800686|ref|ZP_19332470.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429804299|ref|ZP_19336051.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809124|ref|ZP_19340834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429814888|ref|ZP_19346553.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429820092|ref|ZP_19351716.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429835802|ref|ZP_19366016.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429906166|ref|ZP_19372138.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910300|ref|ZP_19376258.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916198|ref|ZP_19382141.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921246|ref|ZP_19387170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927051|ref|ZP_19392960.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930984|ref|ZP_19396881.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937525|ref|ZP_19403409.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429943203|ref|ZP_19409074.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945884|ref|ZP_19411742.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953449|ref|ZP_19419291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956792|ref|ZP_19422622.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432351237|ref|ZP_19594554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|432379291|ref|ZP_19622268.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|432404445|ref|ZP_19647184.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|432428713|ref|ZP_19671188.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|432463456|ref|ZP_19705583.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|432478411|ref|ZP_19720392.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|432479001|ref|ZP_19720968.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|432491879|ref|ZP_19733734.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|432520261|ref|ZP_19757436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|432531841|ref|ZP_19768857.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|432540429|ref|ZP_19777317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|432545911|ref|ZP_19782728.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|432551392|ref|ZP_19788135.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|432561499|ref|ZP_19798137.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|432604875|ref|ZP_19841098.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|432624444|ref|ZP_19860452.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|432625219|ref|ZP_19861214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|432643645|ref|ZP_19879462.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|432658890|ref|ZP_19894560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|432663768|ref|ZP_19899375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|432682842|ref|ZP_19918190.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|432683524|ref|ZP_19918853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|432689370|ref|ZP_19924630.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|432702216|ref|ZP_19937350.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|432716681|ref|ZP_19951690.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|432735095|ref|ZP_19969903.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|432752504|ref|ZP_19987078.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|432762956|ref|ZP_19997414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|432768421|ref|ZP_20002808.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|432772821|ref|ZP_20007129.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|432808295|ref|ZP_20042205.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|432811799|ref|ZP_20045651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|432817883|ref|ZP_20051610.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|432829663|ref|ZP_20063275.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|432832716|ref|ZP_20066266.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|432837144|ref|ZP_20070644.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|432857506|ref|ZP_20084376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|432872090|ref|ZP_20091969.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|432882896|ref|ZP_20098516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|432908878|ref|ZP_20116469.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|432931883|ref|ZP_20131824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|432943915|ref|ZP_20140578.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|432951533|ref|ZP_20145037.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|432958064|ref|ZP_20149206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|432965817|ref|ZP_20154737.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|433021308|ref|ZP_20209376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|433045591|ref|ZP_20233057.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|433050521|ref|ZP_20237831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|433055680|ref|ZP_20242824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|433065520|ref|ZP_20252414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|433070459|ref|ZP_20257212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|433094450|ref|ZP_20280692.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|433132641|ref|ZP_20318055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|433137312|ref|ZP_20322629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|433161209|ref|ZP_20346015.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|433180924|ref|ZP_20365288.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|433196113|ref|ZP_20380070.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|433205807|ref|ZP_20389541.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|442594682|ref|ZP_21012561.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444966243|ref|ZP_21283783.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|445031633|ref|ZP_21347283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|445047930|ref|ZP_21363163.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|445053517|ref|ZP_21368513.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|445061494|ref|ZP_21373996.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
gi|13364508|dbj|BAB38454.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73858020|gb|AAZ90727.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676801|dbj|BAE78051.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K12 substr.
W3110]
gi|169891341|gb|ACB05048.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|192931322|gb|EDV83924.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218354489|emb|CAV01337.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218363375|emb|CAR01028.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218434767|emb|CAR15700.1| tRNA-dihydrouridine synthase A [Escherichia coli UMN026]
gi|253975886|gb|ACT41557.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|257761990|dbj|BAI33487.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|260451122|gb|ACX41544.1| TIM-barrel protein, yjbN family [Escherichia coli DH1]
gi|290765338|gb|ADD59299.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300315715|gb|EFJ65499.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|300356606|gb|EFJ72476.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300397973|gb|EFJ81511.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|300401808|gb|EFJ85346.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300415447|gb|EFJ98757.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300419477|gb|EFK02788.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300453720|gb|EFK17340.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300456844|gb|EFK20337.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300523922|gb|EFK44991.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300529377|gb|EFK50439.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300841948|gb|EFK69708.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|300843456|gb|EFK71216.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301076659|gb|EFK91465.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|306907916|gb|EFN38417.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|308120516|gb|EFO57778.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|315063373|gb|ADT77700.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|315138603|dbj|BAJ45762.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|315254721|gb|EFU34689.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|315617417|gb|EFU98023.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|323164554|gb|EFZ50355.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|323182152|gb|EFZ67562.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|323380563|gb|ADX52831.1| TIM-barrel protein, yjbN family [Escherichia coli KO11FL]
gi|323946182|gb|EGB42216.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|324017108|gb|EGB86327.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|331035765|gb|EGI08003.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331056769|gb|EGI28763.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331061826|gb|EGI33751.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331071642|gb|EGI42978.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|338767747|gb|EGP22557.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|342930161|gb|EGU98883.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|345331951|gb|EGW64409.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|345347312|gb|EGW79624.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|345352482|gb|EGW84730.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345356864|gb|EGW89064.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|345368782|gb|EGX00778.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|354856290|gb|EHF16750.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354860856|gb|EHF21297.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354861381|gb|EHF21821.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354870086|gb|EHF30492.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354874485|gb|EHF34853.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354883727|gb|EHF44042.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354887989|gb|EHF48252.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354891673|gb|EHF51899.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354903374|gb|EHF63476.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907020|gb|EHF67087.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908961|gb|EHF68998.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354911087|gb|EHF71093.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354919640|gb|EHF79582.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|359334159|dbj|BAL40606.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371596951|gb|EHN85777.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|373247535|gb|EHP66976.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|377888304|gb|EHU52775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|377904979|gb|EHU69256.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|377952740|gb|EHV16321.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|377956034|gb|EHV19585.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|377968295|gb|EHV31689.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|377987624|gb|EHV50809.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|377991087|gb|EHV54241.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|378033676|gb|EHV96251.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|378122378|gb|EHW83806.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|378123054|gb|EHW84472.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|378143086|gb|EHX04279.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|378145028|gb|EHX06195.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|378153792|gb|EHX14871.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|378194748|gb|EHX55258.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|378194907|gb|EHX55415.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|378196913|gb|EHX57397.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|378207648|gb|EHX68038.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|378211661|gb|EHX71997.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|378223175|gb|EHX83403.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|378225785|gb|EHX85979.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|378238668|gb|EHX98662.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|378241515|gb|EHY01481.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|378249386|gb|EHY09295.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|378254588|gb|EHY14451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|384377180|gb|EIE35076.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|384471302|gb|EIE55384.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|385708038|gb|EIG45058.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|385708313|gb|EIG45326.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|386124171|gb|EIG72754.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386143977|gb|EIG90444.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|386150564|gb|EIH01853.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|386155656|gb|EIH12007.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|386181655|gb|EIH64416.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|386213292|gb|EII23721.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|386220079|gb|EII36543.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|386225464|gb|EII47794.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|386227961|gb|EII55317.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|386233894|gb|EII65874.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|386798731|gb|AFJ31765.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|390636843|gb|EIN16408.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|390656199|gb|EIN34085.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|390676800|gb|EIN52879.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|390736690|gb|EIO08014.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|390847338|gb|EIP10884.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|390857612|gb|EIP20039.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|391276753|gb|EIQ35515.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|391279919|gb|EIQ38599.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|391291273|gb|EIQ49683.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|391300720|gb|EIQ58628.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|391308710|gb|EIQ66400.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|404293218|gb|EEH72154.2| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|408073042|gb|EKH07351.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|408079601|gb|EKH13716.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|408087883|gb|EKH21285.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|408092649|gb|EKH25834.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|408124563|gb|EKH55227.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|408134422|gb|EKH64253.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|408135989|gb|EKH65748.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|408143289|gb|EKH72597.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|408151617|gb|EKH80104.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|408160868|gb|EKH88859.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|408189214|gb|EKI14964.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|408196910|gb|EKI22184.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|408322390|gb|EKJ38384.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|408333436|gb|EKJ48385.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|408340122|gb|EKJ54631.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|408544476|gb|EKK21929.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|408544935|gb|EKK22376.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|408562418|gb|EKK38580.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|408562657|gb|EKK38814.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|408563515|gb|EKK39647.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|408607240|gb|EKK80644.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|412972029|emb|CCJ46699.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|427200763|gb|EKV71175.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|427237348|gb|EKW04891.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|427241671|gb|EKW09095.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|427256764|gb|EKW22915.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|427256854|gb|EKW23002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|427274140|gb|EKW38801.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|427296711|gb|EKW59759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|427309915|gb|EKW72201.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|427325460|gb|EKW86900.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429250691|gb|EKY35341.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429354130|gb|EKY90834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429354983|gb|EKY91677.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429355975|gb|EKY92658.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429369700|gb|EKZ06275.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429369995|gb|EKZ06562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429371740|gb|EKZ08291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429385867|gb|EKZ22319.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429387816|gb|EKZ24247.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429387996|gb|EKZ24423.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429398944|gb|EKZ35269.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429401059|gb|EKZ37368.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429403621|gb|EKZ39903.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412014|gb|EKZ48212.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429414147|gb|EKZ50323.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422266|gb|EKZ58386.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429425143|gb|EKZ61234.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430862|gb|EKZ66913.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437739|gb|EKZ73737.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441594|gb|EKZ77563.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429446936|gb|EKZ82861.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429453175|gb|EKZ89044.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458229|gb|EKZ94058.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430881972|gb|ELC05177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|430894939|gb|ELC17215.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|430922110|gb|ELC42874.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|430949756|gb|ELC69182.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|430984614|gb|ELD01236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|431001219|gb|ELD16806.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|431011961|gb|ELD26031.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|431016488|gb|ELD30033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|431046854|gb|ELD56945.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|431065903|gb|ELD74652.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|431066212|gb|ELD74956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|431069508|gb|ELD77836.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|431075033|gb|ELD82568.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|431102271|gb|ELE07097.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|431135527|gb|ELE37403.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|431154496|gb|ELE55299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|431167158|gb|ELE67442.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|431176537|gb|ELE76495.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|431205121|gb|ELF03629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|431206103|gb|ELF04535.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|431216417|gb|ELF14055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|431226748|gb|ELF23906.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|431233796|gb|ELF29382.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|431248629|gb|ELF42822.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|431269061|gb|ELF60420.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|431288895|gb|ELF79650.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|431292445|gb|ELF82833.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|431314624|gb|ELG02557.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|431321247|gb|ELG08860.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|431322968|gb|ELG10525.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|431351518|gb|ELG38304.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|431358555|gb|ELG45206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|431358872|gb|ELG45517.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|431381247|gb|ELG65878.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|431389915|gb|ELG73624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|431394112|gb|ELG77653.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|431406404|gb|ELG89624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|431410675|gb|ELG93831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|431422141|gb|ELH04335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|431450338|gb|ELH30825.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|431458467|gb|ELH38791.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|431466054|gb|ELH46133.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|431475178|gb|ELH54982.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|431476578|gb|ELH56368.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|431484867|gb|ELH64538.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|431525831|gb|ELI02605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|431550752|gb|ELI24740.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|431560792|gb|ELI34299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|431564308|gb|ELI37484.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|431577136|gb|ELI49788.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|431577648|gb|ELI50278.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|431605804|gb|ELI75191.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|431640965|gb|ELJ08710.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|431652445|gb|ELJ19595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|431672194|gb|ELJ38466.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|431696969|gb|ELJ62118.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|431712298|gb|ELJ76595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|431714749|gb|ELJ78928.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|441605221|emb|CCP97820.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444571367|gb|ELV47851.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|444636108|gb|ELW09511.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|444656499|gb|ELW29023.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|444658560|gb|ELW31011.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|444666168|gb|ELW38246.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|417297156|ref|ZP_12084403.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|419218451|ref|ZP_13761435.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|419257779|ref|ZP_13800272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|420112425|ref|ZP_14622224.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|420122253|ref|ZP_14631241.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420126332|ref|ZP_14635068.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130440|ref|ZP_14638932.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|424751353|ref|ZP_18179383.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|378056767|gb|EHW19006.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|378095794|gb|EHW57577.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|386260600|gb|EIJ16074.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|394392213|gb|EJE69002.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394414595|gb|EJE88536.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422403|gb|EJE95764.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433682|gb|EJF05689.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|421939583|gb|EKT97098.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 339
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|378976432|ref|YP_005224573.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419980655|ref|ZP_14495938.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985812|ref|ZP_14500950.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991568|ref|ZP_14506532.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997577|ref|ZP_14512372.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003934|ref|ZP_14518576.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009433|ref|ZP_14523916.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015925|ref|ZP_14530222.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021222|ref|ZP_14535404.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420038193|ref|ZP_14551842.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044233|ref|ZP_14557715.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420049952|ref|ZP_14563256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055546|ref|ZP_14568712.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060154|ref|ZP_14573156.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420067204|ref|ZP_14579999.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071847|ref|ZP_14584490.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078448|ref|ZP_14590905.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082921|ref|ZP_14595211.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421913527|ref|ZP_16343208.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914666|ref|ZP_16344307.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424935574|ref|ZP_18353946.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428150792|ref|ZP_18998551.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428942393|ref|ZP_19015390.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|364515843|gb|AEW58971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345328|gb|EJJ38453.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350360|gb|EJJ43449.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362413|gb|EJJ55063.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363280|gb|EJJ55921.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397367621|gb|EJJ60231.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397375785|gb|EJJ68064.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381289|gb|EJJ73461.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387039|gb|EJJ79089.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397404598|gb|EJJ96099.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397412235|gb|EJK03474.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412369|gb|EJK03604.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421653|gb|EJK12659.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397428551|gb|EJK19288.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434293|gb|EJK24930.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439883|gb|EJK30310.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444790|gb|EJK35052.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451690|gb|EJK41770.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407809761|gb|EKF81012.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112612|emb|CCM85833.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123082|emb|CCM86932.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426298762|gb|EKV61144.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|427539260|emb|CCM94689.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 332
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 72 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 249 DREIFGVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|260858159|ref|YP_003232050.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|419263959|ref|ZP_13806360.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|419270071|ref|ZP_13812410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|419275438|ref|ZP_13817720.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|419287034|ref|ZP_13829188.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|425382459|ref|ZP_18766425.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|432677230|ref|ZP_19912667.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
gi|257756808|dbj|BAI28310.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|378100726|gb|EHW62418.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|378105988|gb|EHW67624.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|378111959|gb|EHW73540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|378123875|gb|EHW85291.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|408292570|gb|EKJ11081.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|431209328|gb|ELF07437.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|168466925|ref|ZP_02700773.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762767|ref|ZP_13318893.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767734|ref|ZP_13323798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771003|ref|ZP_13327020.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777295|ref|ZP_13333226.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782425|ref|ZP_13338289.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785444|ref|ZP_13341277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804306|ref|ZP_13359913.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419786385|ref|ZP_14312113.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795235|ref|ZP_14320838.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630652|gb|EDX49264.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392613183|gb|EIW95644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621731|gb|EIX04080.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735026|gb|EIZ92207.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392735384|gb|EIZ92557.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735496|gb|EIZ92668.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744112|gb|EJA01169.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392744288|gb|EJA01344.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392752541|gb|EJA09482.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770825|gb|EJA27547.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 332
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQMLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVTVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|432409561|ref|ZP_19652251.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|432493381|ref|ZP_19735206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
gi|430939926|gb|ELC60132.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|431030101|gb|ELD43122.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
Length = 345
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YGSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|344943243|ref|ZP_08782530.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
gi|344260530|gb|EGW20802.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
Length = 331
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 17/335 (5%)
Query: 1 MVARQYLPPW----FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDR 56
M+++Q P F VAPM+DWTD H R RLIS+HA+LYTEM+ +I+ G+ R
Sbjct: 1 MISKQNKKPHPGRKFCVAPMLDWTDRHCRYFHRLISQHAFLYTEMVTTGALIH--GDHHR 58
Query: 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM 116
FL FS + P+ Q+GGSN LA ++ Y YDE+NLN GCPS +V +G FG LM
Sbjct: 59 FLQFSAAERPVAFQLGGSNPRELAICAKMIEDYGYDEVNLNVGCPSDRVQ-NGRFGACLM 117
Query: 117 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176
+P+ V E ++ +A ++PV+VK RIG+D+ DSY +L F+ V+ + FIIH+RK
Sbjct: 118 AEPELVAECVAAMAQAVSIPVTVKSRIGIDERDSYEELVHFVSTVAD-AGCETFIIHARK 176
Query: 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVM 234
A L+G+SP +NR +PPL+Y+ Y + +DFP L LNGGI T+D+ A L AH VM
Sbjct: 177 AWLSGLSPKQNRDVPPLRYDVAYQIKQDFPQLEIILNGGITTLDQAEAVL---AHVDGVM 233
Query: 235 VGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMK 294
VGR AY NP Y L VD YG +R +++ Y L N+ + ++ +
Sbjct: 234 VGREAYHNP-YLLAEVDRRFYGESKEPRSREMIMDLLIPYIQQQLEL--NDGVRLNNISR 290
Query: 295 PLLHFFHSEPGNGLFKRK-ADAAFQTCKTVKSFLE 328
+L FH EPG ++R ++ A + +K LE
Sbjct: 291 HILGLFHGEPGARGWRRHLSENACKPGADIKVILE 325
>gi|258622397|ref|ZP_05717420.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
gi|258585311|gb|EEW10037.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 19 LSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 76 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 135 SVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ T++E L+ VM+GR AYQNP Y L V
Sbjct: 195 PPLDYPRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 253 DQQIFGLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 308
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 309 RHISENAHKPGAGLEVVEQALAKIP 333
>gi|254177532|ref|ZP_04884187.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
gi|160698571|gb|EDP88541.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 174/277 (62%), Gaps = 8/277 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+
Sbjct: 9 PRRVSVAPMMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP EN
Sbjct: 126 AMRDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L
Sbjct: 185 REIPPLKYDYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
+D Y A + TR +V K Y A L GTY
Sbjct: 243 AGIDARFYSASAPAPTREEVEAKLVEYCAAELARGTY 279
>gi|197334068|ref|YP_002155065.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
gi|197315558|gb|ACH65005.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
Length = 328
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 181/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 9 FSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN+ +L +LA YDE+NLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 66 LGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L F+ V F IH+RKA L+G+SP ENR I
Sbjct: 125 AVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y + +DFP L +NGGI T+ E L AH VM+GR AYQ+P Y L
Sbjct: 185 PPLDYPRAYQIKKDFPQLIIAVNGGIKTLAEAKEHL---AHLDGVMIGREAYQSP-YLLA 240
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD ++G+ RR++VE Y + L N ++ + + +L F S PG
Sbjct: 241 EVDQQLFGSDKPIKKRREIVESMYPYIERQL----ENGAYLGHITRHMLGLFQSMPGARQ 296
Query: 309 FKR 311
++R
Sbjct: 297 WRR 299
>gi|423685022|ref|ZP_17659830.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
gi|371496069|gb|EHN71663.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
Length = 328
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 9 FSVAPMLDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN+ +L +LA YDE+NLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 66 LGGSNVKDLVHCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAEMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L F+ V F IH+RKA L+G+SP ENR I
Sbjct: 125 AVVDIPVTVKTRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +DFP L +NGGI T+ E L VM+GR AYQ+P Y L V
Sbjct: 185 PPLDYPRAYQIKKDFPQLIIAVNGGIKTLAEAKEHLEH-LDGVMIGREAYQSP-YLLAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ RR++VE Y + L N ++ + + +L F S PG ++
Sbjct: 243 DQQLFGSDKPIKKRREIVESMYPYIERQL----ENGAYLGHITRHMLGLFQSMPGARQWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|312965642|ref|ZP_07779871.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|417230595|ref|ZP_12032092.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|417758551|ref|ZP_12406606.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|418999881|ref|ZP_13547451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|419004949|ref|ZP_13552451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|419010602|ref|ZP_13558003.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|419011206|ref|ZP_13558576.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|419021249|ref|ZP_13568540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|419026721|ref|ZP_13573927.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|419031864|ref|ZP_13578996.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|419037570|ref|ZP_13584636.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|419042558|ref|ZP_13589567.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|419297634|ref|ZP_13839663.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|419342682|ref|ZP_13884128.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|444972304|ref|ZP_21289626.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
gi|312289616|gb|EFR17507.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|377838052|gb|EHU03178.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|377838136|gb|EHU03260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|377840340|gb|EHU05413.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|377855260|gb|EHU20133.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|377856032|gb|EHU20893.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|377864740|gb|EHU29532.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|377869597|gb|EHU34308.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|377871003|gb|EHU35671.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|377872882|gb|EHU37524.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|377885003|gb|EHU49509.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|378137427|gb|EHW98703.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|378181451|gb|EHX42122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|386205848|gb|EII10355.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|444574947|gb|ELV51205.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
Length = 345
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|145698340|ref|NP_418473.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238903158|ref|YP_002928954.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|293402687|ref|ZP_06646784.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|293407781|ref|ZP_06651621.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|293476353|ref|ZP_06664761.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|298378215|ref|ZP_06988099.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|383181363|ref|YP_005459368.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|387609842|ref|YP_006098698.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|419872880|ref|ZP_14394895.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444961024|ref|ZP_21278826.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444988293|ref|ZP_21305054.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|450229414|ref|ZP_21897771.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|450254166|ref|ZP_21902519.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
gi|3183570|sp|P32695.3|DUSA_ECOLI RecName: Full=tRNA-dihydrouridine synthase A
gi|38604936|sp|Q8X5V6.2|DUSA_ECO57 RecName: Full=tRNA-dihydrouridine synthase A
gi|145693211|gb|AAC77019.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238863713|gb|ACR65711.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|284924142|emb|CBG37241.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|291320806|gb|EFE60248.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|291429602|gb|EFF02616.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|291472032|gb|EFF14514.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|298280549|gb|EFI22050.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|388333035|gb|EIK99678.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444568211|gb|ELV44901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444588723|gb|ELV64087.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|449313057|gb|EMD03287.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|449313516|gb|EMD03722.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
Length = 330
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
>gi|401761830|ref|YP_006576837.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173364|gb|AFP68213.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 331
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRFFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLEH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGVDGADTDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|170692264|ref|ZP_02883427.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
gi|170142694|gb|EDT10859.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
Length = 317
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/269 (47%), Positives = 173/269 (64%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPDEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PDDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDVVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ ++ + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEEYGFVRDFVGTIAE-AGCDVFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
EY Y L RDFP L +NGGI T+DEV L+ VM+GR AY NP Y L VD Y
Sbjct: 177 EYAYQLKRDFPHLEIIINGGIRTLDEVETHLQH-VDGVMLGREAYHNP-YLLADVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
G+ + LTR QV + Y A + GTY
Sbjct: 235 GSTQAPLTREQVEAQLIEYCAAEMARGTY 263
>gi|157148055|ref|YP_001455374.1| tRNA-dihydrouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|157085260|gb|ABV14938.1| hypothetical protein CKO_03862 [Citrobacter koseri ATCC BAA-895]
Length = 345
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L VM+GR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGITSLEEAKAHLEH-MDGVMIGREAYQNPG-ILASV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+GA ++ VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGATTADADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|416790530|ref|ZP_11881227.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416833963|ref|ZP_11900652.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|320644173|gb|EFX13238.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320665665|gb|EFX32702.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 17 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 73
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 74 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 132
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 133 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 192
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 193 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 250
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 251 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 304
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 305 PGARQWRR 312
>gi|152999313|ref|YP_001364994.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS185]
gi|151363931|gb|ABS06931.1| TIM-barrel protein, yjbN family [Shewanella baltica OS185]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A + L FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 LAPKTLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G
Sbjct: 128 VAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL YE Y L RD+P L +NGG+ T+++ L + VM+GR AYQ
Sbjct: 187 LSPKENREIPPLDYERVYQLKRDYPTLNIGINGGVTTLEQAQLHLAQ-LDGVMMGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L + G + + + ++ F
Sbjct: 246 NP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIEAHLQSGG----RLNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 301 GLPGARAWRR 310
>gi|153803249|ref|ZP_01957835.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229519914|ref|ZP_04409345.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
gi|124121229|gb|EAY39972.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229343042|gb|EEO08029.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
Length = 327
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN ++LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPNDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|423142707|ref|ZP_17130345.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049298|gb|EHY67193.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 186/326 (57%), Gaps = 10/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRY-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 256 DREIFGADTTDADPVVVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGVPGARQWR 311
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R LE+ + + D
Sbjct: 312 RYLSENAHKAGADVRVLEQALKLVAD 337
>gi|419212642|ref|ZP_13755697.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|419229763|ref|ZP_13772590.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|419235432|ref|ZP_13778190.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|419240583|ref|ZP_13783281.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|419246276|ref|ZP_13788900.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|419252005|ref|ZP_13794566.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|419874397|ref|ZP_14396333.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419884759|ref|ZP_14405636.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419902433|ref|ZP_14421648.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419909781|ref|ZP_14428319.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|420099908|ref|ZP_14611111.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420107627|ref|ZP_14617949.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|424758029|ref|ZP_18185751.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378046718|gb|EHW09092.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|378066995|gb|EHW29122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|378072023|gb|EHW34087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|378078096|gb|EHW40087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|378085455|gb|EHW47342.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|378088356|gb|EHW50210.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|388351112|gb|EIL16390.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388352870|gb|EIL17953.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388372678|gb|EIL36095.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|388373883|gb|EIL37107.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|394412068|gb|EJE86246.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394422115|gb|EJE95516.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|421948823|gb|EKU05823.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 345
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|288937656|ref|YP_003441715.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
gi|288892365|gb|ADC60683.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
Length = 331
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGIAGADADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|160873928|ref|YP_001553244.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS195]
gi|378707171|ref|YP_005272065.1| yjbN family TIM-barrel protein [Shewanella baltica OS678]
gi|160859450|gb|ABX47984.1| TIM-barrel protein, yjbN family [Shewanella baltica OS195]
gi|315266160|gb|ADT93013.1| TIM-barrel protein, yjbN family [Shewanella baltica OS678]
Length = 339
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A + L FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 LAPKTLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G
Sbjct: 128 VAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL YE Y L RD+P L +NGG+ T+++ L + VM+GR AYQ
Sbjct: 187 LSPKENREIPPLDYERVYQLKRDYPTLNIGINGGVTTLEQAQLHLAQ-LDGVMMGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L + G + + + ++ F
Sbjct: 246 NP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIEAHLQSGG----RLNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 301 GLPGARAWRR 310
>gi|421105566|ref|ZP_15566147.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H2]
gi|410009470|gb|EKO63125.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H2]
Length = 347
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 194/329 (58%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ +++ G+ R L++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVLH--GDRSRLLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS+ LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E +
Sbjct: 73 GGSDPKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +P
Sbjct: 132 SVSIPITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL Y Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD
Sbjct: 191 PLHYTYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 249 SLFFGENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRK 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 307 ILTEGMYSGYS-KDLLSKAIQEISNDSLD 334
>gi|332280828|ref|ZP_08393241.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|415814116|ref|ZP_11505746.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|417224959|ref|ZP_12028250.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|417280697|ref|ZP_12067997.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|417605017|ref|ZP_12255574.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|417626327|ref|ZP_12276610.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417669676|ref|ZP_12319205.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|419319630|ref|ZP_13861420.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|419331777|ref|ZP_13873363.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|419378314|ref|ZP_13919322.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|422373781|ref|ZP_16454079.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|422815584|ref|ZP_16863799.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|432634053|ref|ZP_19869966.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
gi|323171192|gb|EFZ56840.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|324014847|gb|EGB84066.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|332103180|gb|EGJ06526.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|345346319|gb|EGW78649.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|345369877|gb|EGX01857.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|378163273|gb|EHX24226.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|378164171|gb|EHX25118.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|378213172|gb|EHX73490.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|385541035|gb|EIF87847.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|386200007|gb|EIH98998.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|386245026|gb|EII86756.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|397782131|gb|EJK92999.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|431166524|gb|ELE66839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|212555091|gb|ACJ27545.1| TIM-barrel protein, yjbN family [Shewanella piezotolerans WP3]
Length = 370
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 183/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S LYTEM+ II+ +G+ +LA++ E+HP+ LQ
Sbjct: 52 FSIAPMLDWTDRHYRYFARLMSAEVLLYTEMVTTGAIIHGRGD---YLAYNQEEHPVALQ 108
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E + +
Sbjct: 109 LGGSNAVDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPTLVAECVDAMK 167
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L +FI V ++ FIIH+RKA L G+SP ENR I
Sbjct: 168 QVVDIPVTVKTRIGIDEQDSYEFLTEFIDTVKAVG-CNDFIIHARKAWLQGLSPKENREI 226
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L YE Y L RD+ DL+ ++NGG+ T+ E L++ VMVGR AYQNP Y L V
Sbjct: 227 PELDYERVYQLKRDYADLSISINGGVKTLAECKTHLQQ-LDGVMVGREAYQNP-YILAEV 284
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G ++R V+EK Y + L G + V + ++ F E G+ +++
Sbjct: 285 DQQLCGIDKPVMSRDAVLEKLLPYIEKHLQAGGK----LNHVTRHIIGLFQGEVGSRVWR 340
Query: 311 R 311
R
Sbjct: 341 R 341
>gi|420376104|ref|ZP_14875894.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|391307140|gb|EIQ64879.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
Length = 332
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 180/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVEAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINMVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYDRVYQLKRDFPQLTMSINGGIKSLEEAKTHLQH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 249 DREIFAATTEDTDPVTVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|260870808|ref|YP_003237210.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|415823434|ref|ZP_11511809.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|417200988|ref|ZP_12017672.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|417206238|ref|ZP_12019316.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|417594583|ref|ZP_12245268.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|419199876|ref|ZP_13743157.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|419206262|ref|ZP_13749409.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|419224200|ref|ZP_13767105.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|419889320|ref|ZP_14409738.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893875|ref|ZP_14413826.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420089152|ref|ZP_14600989.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420094959|ref|ZP_14606505.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424773293|ref|ZP_18200356.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257767164|dbj|BAI38659.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|323175935|gb|EFZ61527.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|345330857|gb|EGW63320.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|378041616|gb|EHW04075.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|378042064|gb|EHW04516.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|378059387|gb|EHW21587.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|386187447|gb|EIH76266.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|386197721|gb|EIH91920.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|388357917|gb|EIL22415.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388365760|gb|EIL29536.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|394388842|gb|EJE66080.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394652|gb|EJE71212.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421936655|gb|EKT94316.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNTQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|419078276|ref|ZP_13623767.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|419134258|ref|ZP_13679076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|425270107|ref|ZP_18661709.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
gi|377916323|gb|EHU80410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|377969396|gb|EHV32773.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|408179558|gb|EKI06216.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|416075623|ref|ZP_11585114.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337443|ref|ZP_21151419.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006108|gb|EGY46572.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443546925|gb|ELT56512.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 327
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 191/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+A + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVATQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ A + +T R+ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFNANAPIVTPREAVEKMLPYIEQQLSRGVYLNH------IVRHILSAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T F+E
Sbjct: 300 WRRYLSENAYKEGAGIEVVETALGFVE 326
>gi|224588182|gb|ACN58806.1| tRNA dihydrouridine synthase A [uncultured bacterium BLR9]
Length = 334
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 187/324 (57%), Gaps = 19/324 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMD TD H R L RL+S+HA LYTEM+ AE +I +G+ R L FSP +HP+ LQ
Sbjct: 15 FSVAPMMDCTDRHCRVLHRLLSRHALLYTEMVTAEAVI--RGDRARLLGFSPAEHPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG+ LA+A ++ + YDEINLN GCPS +V GCFG +LM +P VG+ ++ +
Sbjct: 73 LGGAEPARLAEAAKIGADFGYDEINLNVGCPSDRVQ-SGCFGAALMKEPLRVGDCVAAMR 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +VPV+VKCRIGVD+ + L I + T F +H+RKA L+G+SP ENR +
Sbjct: 132 AAVSVPVTVKCRIGVDEQEPREALPALIEACTRAGVT-AFAVHARKAWLSGLSPKENREV 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y YAL R P+LT +NGGI ++DE A L VM+GRAAYQ P L V
Sbjct: 191 PPLDYSLVYALKRARPELTIVINGGIGSLDEAEAHLPH-VDGVMLGRAAYQTPA-ILAEV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ +G + R + E + Y I P + + K +L F+ PG F+
Sbjct: 249 DSRFFGEGA-----RDIGEAVEAYAAYIGARLAEGVP-LNAMTKHMLGLFNGIPGARQFR 302
Query: 311 R-------KADAAFQTCKTVKSFL 327
R K A QT + +F+
Sbjct: 303 RHLSENATKKGAGLQTLRDALAFV 326
>gi|432452323|ref|ZP_19694574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|433035989|ref|ZP_20223668.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
gi|430976481|gb|ELC93347.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|431544850|gb|ELI19661.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSYTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|381160439|ref|ZP_09869671.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
gi|380878503|gb|EIC20595.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
Length = 315
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 190/319 (59%), Gaps = 17/319 (5%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H+R ARLIS+H WLY+EM+ +I+ G+ RFL F P +HP+ LQ+GGS+
Sbjct: 1 MLDWTDKHFRFFARLISRHTWLYSEMITTGALIH--GDTGRFLRFDPAEHPLALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ + + YDEINLN GCPS +V +G FG LM +P+ V + ++ + A ++
Sbjct: 59 PAELARCARMGADWGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVADCVAAMKAAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PVSVK RIG+DD DSY +L DF+ ++S+ + ++H+RKA L G+SP ENR +PPL+Y
Sbjct: 118 PVSVKTRIGIDDRDSYEELADFVTRISA-AGCDLLVLHARKAWLQGLSPRENREVPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L DFP L LNGGI T+++ + VM+GR AYQNPW L D+ ++
Sbjct: 177 DVALQLRADFPRLPLVLNGGITTLEQAQYWCER-LDGVMIGREAYQNPWL-LAAADSELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR---- 311
G +R QV+E++ Y + L G P + + + LL F+ PG ++R
Sbjct: 235 GDAHPLPSRHQVLERFYPYVERCL---GEGVP-LNSISRHLLGLFNGCPGARRWRRLLSE 290
Query: 312 ---KADAAFQTCKTVKSFL 327
+A A + +T + +
Sbjct: 291 QAHRAGAGVEVLRTAAALV 309
>gi|15804641|ref|NP_290682.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|12519000|gb|AAG59247.1|AE005638_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFXGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|395233275|ref|ZP_10411517.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
gi|394732321|gb|EJF32016.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
Length = 334
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/306 (44%), Positives = 179/306 (58%), Gaps = 10/306 (3%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
+ P FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 FQPHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PI LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PIALQLGGSDPQALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP
Sbjct: 126 IKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIGTVAGKGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT +NGGI T++E L VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPQLTMAINGGIKTLEEAKTHLEH-LDGVMVGREAYQNPGL 244
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA + VV Y + L N ++ V + +L F PG
Sbjct: 245 -LTTVDREIFGADVADSDPVAVVRAMYPYIERELA----NGTYLGHVTRHMLGLFQGIPG 299
Query: 306 NGLFKR 311
++R
Sbjct: 300 ARQWRR 305
>gi|221213021|ref|ZP_03585997.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
gi|221167234|gb|EED99704.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
Length = 357
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/314 (42%), Positives = 186/314 (59%), Gaps = 15/314 (4%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LA
Sbjct: 14 MSASSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLA 71
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 72 FTPNESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 130
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L
Sbjct: 131 QLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCS-TFIVHARNAIL 189
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR A
Sbjct: 190 KGLSPKENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREA 248
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLL 297
Y NP Y L VD YG+ + TR + + Y A L GTY + +++ L
Sbjct: 249 YHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHAL 301
Query: 298 HFFHSEPGNGLFKR 311
+ PG ++R
Sbjct: 302 GLYRGVPGARGWRR 315
>gi|422829122|ref|ZP_16877290.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
gi|371610279|gb|EHN98808.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
Length = 345
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++ E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLKEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|26250830|ref|NP_756870.1| tRNA-dihydrouridine synthase A [Escherichia coli CFT073]
gi|91213570|ref|YP_543556.1| tRNA-dihydrouridine synthase A [Escherichia coli UTI89]
gi|110644384|ref|YP_672114.1| tRNA-dihydrouridine synthase A [Escherichia coli 536]
gi|117626314|ref|YP_859637.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|191172024|ref|ZP_03033569.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215489385|ref|YP_002331816.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218561117|ref|YP_002394030.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218692332|ref|YP_002400544.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222158756|ref|YP_002558895.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|227886947|ref|ZP_04004752.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|237703603|ref|ZP_04534084.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|306815840|ref|ZP_07449985.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|331660615|ref|ZP_08361547.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|386602090|ref|YP_006103596.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|386606612|ref|YP_006112912.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|386621742|ref|YP_006141322.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|386632022|ref|YP_006151742.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386636942|ref|YP_006156661.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|386641700|ref|YP_006108498.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|387619365|ref|YP_006122387.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387831956|ref|YP_003351893.1| hypothetical protein ECSF_3903 [Escherichia coli SE15]
gi|417088162|ref|ZP_11954891.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|417287891|ref|ZP_12075177.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|417664694|ref|ZP_12314273.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|419702916|ref|ZP_14230498.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|419913185|ref|ZP_14431627.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|419943137|ref|ZP_14459707.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|422751074|ref|ZP_16804984.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|422757189|ref|ZP_16811010.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|422840511|ref|ZP_16888482.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|425280507|ref|ZP_18671715.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|432360522|ref|ZP_19603729.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|432365322|ref|ZP_19608471.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|432383964|ref|ZP_19626884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|432384979|ref|ZP_19627884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|432395454|ref|ZP_19638250.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|432409140|ref|ZP_19651838.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|432419670|ref|ZP_19662233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|432429809|ref|ZP_19672261.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|432439028|ref|ZP_19681400.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|432454298|ref|ZP_19696515.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|432468458|ref|ZP_19710529.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|432473417|ref|ZP_19715450.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|432502626|ref|ZP_19744371.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|432506961|ref|ZP_19748675.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|432516455|ref|ZP_19753666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|432526543|ref|ZP_19763651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|432556581|ref|ZP_19793283.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|432566482|ref|ZP_19803018.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|432571368|ref|ZP_19807864.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|432580849|ref|ZP_19817270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|432585834|ref|ZP_19822212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|432590647|ref|ZP_19826984.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|432595351|ref|ZP_19831649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|432605507|ref|ZP_19841712.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|432648737|ref|ZP_19884518.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|432653723|ref|ZP_19889458.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|432658305|ref|ZP_19893997.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|432696934|ref|ZP_19932121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|432701581|ref|ZP_19936721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|432708455|ref|ZP_19943527.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|432715923|ref|ZP_19950944.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|432721212|ref|ZP_19956145.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|432725610|ref|ZP_19960516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|432730372|ref|ZP_19965236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|432739392|ref|ZP_19974116.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|432748040|ref|ZP_19982698.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|432757024|ref|ZP_19991564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|432761921|ref|ZP_19996390.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|432776393|ref|ZP_20010654.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|432781392|ref|ZP_20015599.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|432790092|ref|ZP_20024216.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|432818859|ref|ZP_20052577.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|432824988|ref|ZP_20058649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|432841898|ref|ZP_20075340.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|432891895|ref|ZP_20104374.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|432896081|ref|ZP_20107358.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|432908008|ref|ZP_20116270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|432941090|ref|ZP_20138784.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|432969653|ref|ZP_20158546.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|432976292|ref|ZP_20165121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|432978938|ref|ZP_20167733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|432987914|ref|ZP_20176620.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|432988561|ref|ZP_20177237.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|432993273|ref|ZP_20181900.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|432997732|ref|ZP_20186308.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|433003009|ref|ZP_20191513.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|433010268|ref|ZP_20198676.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|433031017|ref|ZP_20218853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|433041086|ref|ZP_20228666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|433060598|ref|ZP_20247621.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|433075407|ref|ZP_20262033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|433080280|ref|ZP_20266789.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|433084999|ref|ZP_20271436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|433089802|ref|ZP_20276152.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|433098903|ref|ZP_20285061.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|433103672|ref|ZP_20289732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|433108334|ref|ZP_20294285.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|433113347|ref|ZP_20299186.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|433118006|ref|ZP_20303777.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|433122736|ref|ZP_20308383.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|433127708|ref|ZP_20313240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|433141781|ref|ZP_20327010.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|433146709|ref|ZP_20331831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|433151733|ref|ZP_20336721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|433156303|ref|ZP_20341220.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|433166089|ref|ZP_20350807.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|433171087|ref|ZP_20355695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|433185864|ref|ZP_20370089.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|433190879|ref|ZP_20374956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|433200840|ref|ZP_20384713.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|433210269|ref|ZP_20393923.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|433215106|ref|ZP_20398670.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
gi|38604877|sp|Q8FB30.1|DUSA_ECOL6 RecName: Full=tRNA-dihydrouridine synthase A
gi|26111261|gb|AAN83444.1|AE016770_244 Hypothetical protein yjbN [Escherichia coli CFT073]
gi|91075144|gb|ABE10025.1| hypothetical protein YjbN [Escherichia coli UTI89]
gi|110345976|gb|ABG72213.1| hypothetical protein YjbN (putative tRNA-dihydrouridine synthase)
[Escherichia coli 536]
gi|115515438|gb|ABJ03513.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|190907789|gb|EDV67383.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215267457|emb|CAS11910.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218367886|emb|CAR05681.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218429896|emb|CAR10723.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222035761|emb|CAP78506.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|226901515|gb|EEH87774.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|227836088|gb|EEJ46554.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|281181113|dbj|BAI57443.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294489479|gb|ADE88235.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|305850815|gb|EFM51271.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|307556192|gb|ADN48967.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|307629096|gb|ADN73400.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|312948626|gb|ADR29453.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|323950409|gb|EGB46290.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|323954491|gb|EGB50275.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|330908368|gb|EGH36887.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|331051657|gb|EGI23696.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|333972243|gb|AEG39048.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|355349206|gb|EHF98415.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|355422921|gb|AER87118.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355427841|gb|AER92037.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|371606200|gb|EHN94798.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|380345931|gb|EIA34237.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|386248676|gb|EII94848.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|388390010|gb|EIL51513.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|388421812|gb|EIL81413.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|408196580|gb|EKI21859.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|430872230|gb|ELB95844.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|430882587|gb|ELC05666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|430902607|gb|ELC24464.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|430911578|gb|ELC32859.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|430919738|gb|ELC40659.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|430925616|gb|ELC46282.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|430948977|gb|ELC68558.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|430958081|gb|ELC76679.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|430959226|gb|ELC77560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|430987409|gb|ELD03948.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|430989354|gb|ELD05810.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|430994902|gb|ELD11214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|431025256|gb|ELD38367.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|431034284|gb|ELD46225.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|431037366|gb|ELD48352.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|431046760|gb|ELD56853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|431095821|gb|ELE01422.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|431104526|gb|ELE08901.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|431112847|gb|ELE16528.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|431124246|gb|ELE26898.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|431125135|gb|ELE27565.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|431134773|gb|ELE36716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|431135289|gb|ELE37204.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|431143486|gb|ELE45211.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|431177078|gb|ELE77016.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|431186358|gb|ELE85920.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|431186944|gb|ELE86476.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|431229533|gb|ELF26177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|431239218|gb|ELF33863.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|431250335|gb|ELF44396.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|431254028|gb|ELF47504.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|431269735|gb|ELF61040.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|431278346|gb|ELF69339.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|431279632|gb|ELF70586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|431287423|gb|ELF78233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|431288818|gb|ELF79574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|431298492|gb|ELF88117.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|431304244|gb|ELF92776.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|431333140|gb|ELG20355.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|431333524|gb|ELG20711.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|431334325|gb|ELG21487.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|431372059|gb|ELG57755.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|431376984|gb|ELG62123.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|431399550|gb|ELG82955.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|431425633|gb|ELH07702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|431427690|gb|ELH09633.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|431432970|gb|ELH14645.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|431459094|gb|ELH39410.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|431484661|gb|ELH64335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|431488968|gb|ELH68597.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|431492246|gb|ELH71848.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|431500550|gb|ELH79564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|431501518|gb|ELH80499.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|431513071|gb|ELH91157.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|431520010|gb|ELH97439.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|431520438|gb|ELH97764.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|431520774|gb|ELH98094.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|431538844|gb|ELI14824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|431547062|gb|ELI21444.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|431564779|gb|ELI37946.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|431580986|gb|ELI53441.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|431591980|gb|ELI62887.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|431596849|gb|ELI66790.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|431599306|gb|ELI69013.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|431611417|gb|ELI80695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|431614400|gb|ELI83554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|431622651|gb|ELI91338.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|431623350|gb|ELI92022.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|431629513|gb|ELI97875.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|431637669|gb|ELJ05723.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|431639117|gb|ELJ06988.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|431654258|gb|ELJ21317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|431656329|gb|ELJ23316.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|431666311|gb|ELJ32953.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|431668920|gb|ELJ35359.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|431682291|gb|ELJ48058.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|431682726|gb|ELJ48375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|431700396|gb|ELJ65375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|431700574|gb|ELJ65551.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|431715577|gb|ELJ79724.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|431727576|gb|ELJ91331.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|431730578|gb|ELJ94141.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
Length = 331
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|300115485|ref|YP_003762060.1| TIM-barrel protein [Nitrosococcus watsonii C-113]
gi|299541422|gb|ADJ29739.1| TIM-barrel protein, yjbN family [Nitrosococcus watsonii C-113]
Length = 325
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 184/307 (59%), Gaps = 14/307 (4%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
+P S+APMMDWTD H R RLIS HA LYTEM+ +++ G+ RFLA +HP
Sbjct: 6 IPYKVSIAPMMDWTDRHCRYFLRLISHHALLYTEMVTTGALVH--GDRIRFLAHHSSEHP 63
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS+ + LA ++A Y +DE+NLN GCPS +V G FG LM +P+ V E +
Sbjct: 64 LALQLGGSHPEELALCAQIAEDYGFDEVNLNVGCPSNRVQS-GRFGACLMAEPQLVAECV 122
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +A T +PV+VK RIG+D+ DSY L FI V+ + R FIIH+RKA L G+SP E
Sbjct: 123 AAMAQATQIPVTVKTRIGIDEQDSYEALSSFISTVAQ-AGCRTFIIHARKAWLQGLSPKE 181
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR PPL+Y+ A+ RDFP L +NGGI T+ EV+ L + VM+GRAAY NP Y
Sbjct: 182 NREKPPLRYDVVRAIKRDFPQLEVMINGGITTLKEVSEHL-ELLDGVMIGRAAYHNP-YL 239
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEP 304
L VD YG + TR +++E + Y L G Y + + + +L F +P
Sbjct: 240 LAPVDQRFYGDFRALPTRHEIIEAFLPYAAEQLARGVY------LSRMTRHILGLFQGQP 293
Query: 305 GNGLFKR 311
G ++R
Sbjct: 294 GARAWRR 300
>gi|237748250|ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
gi|229379612|gb|EEO29703.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
Length = 330
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 178/301 (59%), Gaps = 6/301 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RLIS+H WLYTEM+ +++ G++ R L FS E+HPI LQ
Sbjct: 11 ISVAPMLDWTDRHCRYFHRLISRHTWLYTEMVTTGALLF--GDVARHLDFSEEEHPIALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA+ L + YDEINLNCGCPS +V G FG LM + V + +
Sbjct: 69 LGGSEPGDLAQCARLGEKWGYDEINLNCGCPSERVQ-KGAFGACLMSESTLVANCVKAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++ V+VK RIG+D ++SY+ + DFI +V+ + + FI+H+R A+L G+SP ENR I
Sbjct: 128 DAVSIDVTVKHRIGIDKNESYDFVRDFIGEVAE-AGCKTFIVHARNAILKGLSPRENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP+L LNGGI T DEV + K VM+GRAAY P Y +
Sbjct: 187 PPLRYEVVYQLKKDFPELEILLNGGIETADEVGEHI-KHVDGVMIGRAAYHYP-YRMAEF 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y P++ T VV+ Y + L YG+ + + + +L PG F+
Sbjct: 245 DARFYDDPTTATTPADVVKAMMPYIEKQLSLYGSKGLKMHGITRHMLGLMTGLPGARRFR 304
Query: 311 R 311
+
Sbjct: 305 Q 305
>gi|422016920|ref|ZP_16363496.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
gi|414091350|gb|EKT53036.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
Length = 342
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 182/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R++SK+ LYTEM+ IIY +G+ +LAFS E+ P+ LQ
Sbjct: 25 FSVAPMLDWTDRHCRYFHRVLSKNTLLYTEMVTTGAIIYGKGD---YLAFSEEEQPVALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A Y+EINLN GCPS +V +G FG LM D + V + + +
Sbjct: 82 LGGSDPAALAQCAKLAEARGYNEINLNVGCPSDRVQ-NGRFGACLMGDAQLVADCIKAMQ 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI KVS+ FIIH+RKA L+G+SP ENR I
Sbjct: 141 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDKVSTQGGCEMFIIHARKAWLSGLSPKENREI 200
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E LR VMVGR AYQNP L V
Sbjct: 201 PPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHLRY-LDGVMVGREAYQNP-SILAEV 258
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ + SS + V + Y + L + ++ + + +L F PG ++
Sbjct: 259 DNQLFDSQSSVVNTFDAVRQMFPYIEKEL----SQGAYLGHITRHMLGIFQGIPGARQWR 314
Query: 311 R 311
R
Sbjct: 315 R 315
>gi|418024442|ref|ZP_12663425.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
gi|353536402|gb|EHC05961.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
Length = 334
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 186/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L +NGG+ T+++ L + VM+GR AYQNP Y L V
Sbjct: 191 PPLDYERVYQLKRDYPTLNIGINGGVTTLEQAQLHLAQ-LDGVMMGREAYQNP-YILAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L + G + + + ++ F PG ++
Sbjct: 249 DQVLCGSQKAVISREDVIEAMLPYIEAHLQSGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|254245521|ref|ZP_04938842.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
gi|124870297|gb|EAY62013.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
Length = 359
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 184/306 (60%), Gaps = 14/306 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P + P+
Sbjct: 24 PRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSESPV 81
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 82 ALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVR 140
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP EN
Sbjct: 141 AMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPKEN 199
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKY+Y Y L RDFP L +NGGI T+DEV L + VM+GR AY NP Y L
Sbjct: 200 REIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHL-EHVDGVMLGREAYHNP-YVL 257
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPG 305
VD YGA ++ TR + + Y A L GTY + +++ L + PG
Sbjct: 258 AEVDARFYGATAAVPTREEAEAQLIAYCAAELKRGTY------LGAIVRHALGLYRGMPG 311
Query: 306 NGLFKR 311
++R
Sbjct: 312 ARGWRR 317
>gi|417439152|ref|ZP_12161938.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353612375|gb|EHC64763.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 332
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 186/327 (56%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA + VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTIDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|167625570|ref|YP_001675864.1| tRNA-dihydrouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|167355592|gb|ABZ78205.1| TIM-barrel protein, yjbN family [Shewanella halifaxensis HAW-EB4]
Length = 328
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 184/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHYRYFARLMSSQVLLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V E +S +
Sbjct: 67 LGGSNPADLAACAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVSAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++P++VK RIG+D+ DSY L FI V + + F IH+RKA L G+SP ENR I
Sbjct: 126 QVVDIPITVKTRIGIDEQDSYEFLTQFIDTVKA-AGCEEFTIHARKAWLQGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L ++NGGI T++E L+ VMVGR AYQNP Y L V
Sbjct: 185 PPLDYERVYQLKRDYPQLNISINGGIKTLEECQTHLQH-LDGVMVGREAYQNP-YILAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G + ++R V+EK Y + L G + + + ++ + E G+ +++
Sbjct: 243 DQKLCGIDTPVISRDAVLEKLLPYIEKHLQQGG----RLNHITRHIIGLYQGEVGSRVWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|117919170|ref|YP_868362.1| tRNA-dihydrouridine synthase A [Shewanella sp. ANA-3]
gi|117611502|gb|ABK46956.1| TIM-barrel protein, yjbN family [Shewanella sp. ANA-3]
Length = 334
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 192/330 (58%), Gaps = 18/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QAVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPTLNISINGGITSLEQAKTHLQH-LDGVMVGREAYQNP-YILAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQLLCGSQKAVMSREAVIETMLPYIEAHLQAGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R K A + K ++ I A
Sbjct: 305 RYLSENAHKNGAGIEVVKQAYQSIQSEITA 334
>gi|334123884|ref|ZP_08497898.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|333389862|gb|EGK61018.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
Length = 331
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSVPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++DE A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGITSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGVEGADTDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|153216666|ref|ZP_01950573.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
gi|124114177|gb|EAY32997.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
Length = 327
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVATMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|15640406|ref|NP_230033.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121590952|ref|ZP_01678272.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121729744|ref|ZP_01682184.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|147675235|ref|YP_001218647.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O395]
gi|153820423|ref|ZP_01973090.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|153823513|ref|ZP_01976180.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|153827262|ref|ZP_01979929.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|153830467|ref|ZP_01983134.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|227080591|ref|YP_002809142.1| tRNA-dihydrouridine synthase A [Vibrio cholerae M66-2]
gi|227116785|ref|YP_002818681.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229504962|ref|ZP_04394473.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229508600|ref|ZP_04398096.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229516011|ref|ZP_04405462.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229526966|ref|ZP_04416363.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229606339|ref|YP_002876987.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254286198|ref|ZP_04961157.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|254851689|ref|ZP_05241039.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|298501275|ref|ZP_07011073.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|360037019|ref|YP_004938782.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740257|ref|YP_005332226.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|418331085|ref|ZP_12942036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|418347786|ref|ZP_12952523.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|421327606|ref|ZP_15778123.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|424025899|ref|ZP_17765520.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
gi|38605061|sp|Q9KUX9.1|DUSA_VIBCH RecName: Full=tRNA-dihydrouridine synthase A
gi|9654797|gb|AAF93552.1| NifR3/Smm1 family protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547178|gb|EAX57305.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121628529|gb|EAX61013.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|126509034|gb|EAZ71628.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|126518958|gb|EAZ76181.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|146317118|gb|ABQ21657.1| TIM-barrel protein, yjbN family [Vibrio cholerae O395]
gi|148874069|gb|EDL72204.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|149738810|gb|EDM53152.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|150423613|gb|EDN15555.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|227008479|gb|ACP04691.1| NifR3/Smm1 family protein [Vibrio cholerae M66-2]
gi|227012235|gb|ACP08445.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229335578|gb|EEO01058.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229346914|gb|EEO11881.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229354368|gb|EEO19295.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229358020|gb|EEO22936.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229368994|gb|ACQ59417.1| tRNA dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254847394|gb|EET25808.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|297540029|gb|EFH76092.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|356421741|gb|EHH75232.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|356448253|gb|EHI01033.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|356648173|gb|AET28228.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793767|gb|AFC57238.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|395933128|gb|EJH43870.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|408881554|gb|EKM20431.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
Length = 327
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|161524837|ref|YP_001579849.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|160342266|gb|ABX15352.1| TIM-barrel protein, yjbN family [Burkholderia multivorans ATCC
17616]
Length = 357
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 187/314 (59%), Gaps = 15/314 (4%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LA
Sbjct: 14 MSASSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLA 71
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 72 FTPNESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 130
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + +VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L
Sbjct: 131 QLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCS-TFIVHARNAIL 189
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L R+FP L +NGGI T+DEV L VM+GR A
Sbjct: 190 KGLSPKENREIPPLKYDYAYRLKREFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREA 248
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLL 297
Y NP Y L VD YG+ + TR + + Y A L GTY + +++ L
Sbjct: 249 YHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHAL 301
Query: 298 HFFHSEPGNGLFKR 311
+ PG ++R
Sbjct: 302 GLYRGVPGARGWRR 315
>gi|365539321|ref|ZP_09364496.1| tRNA-dihydrouridine synthase A [Vibrio ordalii ATCC 33509]
Length = 326
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 184/306 (60%), Gaps = 14/306 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+H +
Sbjct: 4 PCRLSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGD---FLAYNEEEHSV 60
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN +LA +LA Y YDE+NLN GCPS +V +G FG LM +P+ V + ++
Sbjct: 61 ALQLGGSNPQDLAHCAKLAQQYGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVA 119
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ + ++PV+VK RIG+DD DSY L DFI VS F IH+RKA L+G+SP EN
Sbjct: 120 AMKSVVDIPVTVKTRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKEN 179
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL Y Y L +DFP L +NGG+ T+ EV+ L+ VM+GR AYQ+P Y L
Sbjct: 180 REIPPLDYSRAYQLKKDFPHLVIAVNGGVKTLAEVSEHLQH-LDGVMIGREAYQSP-YLL 237
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPG 305
VD I+G + R Q++E+ Y + L G+Y + + + +L F + PG
Sbjct: 238 AEVDQTIFGMDTPIKKRSQIIEEMFPYIERQLAQGSY------LGHITRHMLGMFQNMPG 291
Query: 306 NGLFKR 311
++R
Sbjct: 292 ARQWRR 297
>gi|383816678|ref|ZP_09972071.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
gi|383294485|gb|EIC82826.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
Length = 351
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ A LYTEM+ II+ +G+ +LAF ++HP+ LQ
Sbjct: 28 FSIAPMLDWTDRHCRHFHRLMSREALLYTEMVTTGAIIHGKGD---YLAFGSQEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA LA YDEINLN GCPS +V +G FG LM V + + +
Sbjct: 85 LGGSNPQDLATCARLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQAALVADGIKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ +VS FIIH+RKA L+G+SP ENR +
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFVQQVSERGGCDTFIIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI ++++ L+ VM+GR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTIAINGGIKSLEDAKQHLQH-MDGVMIGREAYQNPSMLL-DV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ S LT +V+ Y ++ L +N ++ + + +L F PG ++
Sbjct: 262 DRELFGSQSPVLTGPEVIRALYPYIESEL----SNGTYLGHITRHILGIFQGIPGARQWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|187731116|ref|YP_001882727.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
gi|187428108|gb|ACD07382.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
Length = 347
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 87 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 146 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 264 DREIFGSSDTDAYPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 317
Query: 309 FKR 311
++R
Sbjct: 318 WRR 320
>gi|365968567|ref|YP_004950128.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365747480|gb|AEW71707.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 331
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNASLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKSLEEAKTHLEH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGVEGADTDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|421777222|ref|ZP_16213820.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|442598785|ref|ZP_21016534.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|408457717|gb|EKJ81510.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|441652543|emb|CCQ02085.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 339
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|425291271|ref|ZP_18682073.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
gi|408208406|gb|EKI33055.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
Length = 345
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L + PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLYQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|205355015|ref|YP_002228816.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125917|ref|ZP_09771081.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131990|ref|ZP_21381991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205274796|emb|CAR39855.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630167|gb|EGE36510.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444849429|gb|ELX74540.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 332
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 186/327 (56%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR MVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGAMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|170769561|ref|ZP_02904014.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
gi|170121618|gb|EDS90549.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
Length = 331
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKAHLQY-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|311281407|ref|YP_003943638.1| yjbN family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308750602|gb|ADO50354.1| TIM-barrel protein, yjbN family [Enterobacter cloacae SCF1]
Length = 332
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DAASIPVTVKTRIGIDDQDSYEFLCEFINTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++ E A L+ VMVGR YQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLAEAKAHLQH-MDGVMVGREVYQNPG-ILATV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L +N ++ + + +L F PG ++
Sbjct: 249 DREIFGASAADADPIAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|126175780|ref|YP_001051929.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS155]
gi|386342526|ref|YP_006038892.1| yjbN family TIM-barrel protein [Shewanella baltica OS117]
gi|125998985|gb|ABN63060.1| TIM-barrel protein, yjbN family [Shewanella baltica OS155]
gi|334864927|gb|AEH15398.1| TIM-barrel protein, yjbN family [Shewanella baltica OS117]
Length = 339
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A + L FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 LAPKTLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G
Sbjct: 128 VAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL YE Y L RD+P L +NGGI T+++ L + VM+GR AYQ
Sbjct: 187 LSPKENREIPPLDYERVYQLKRDYPALNIGINGGITTLEQAQLHLAQ-LDGVMMGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L + G + + + ++ F
Sbjct: 246 NP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIEAHLLSGG----RLNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 301 GLPGARAWRR 310
>gi|188494852|ref|ZP_03002122.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
gi|188490051|gb|EDU65154.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
Length = 347
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 87 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 146 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 264 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 317
Query: 309 FKR 311
++R
Sbjct: 318 WRR 320
>gi|416270359|ref|ZP_11642755.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|416298763|ref|ZP_11652086.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
gi|320174478|gb|EFW49618.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|320185261|gb|EFW60037.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
Length = 339
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDAYPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|398340089|ref|ZP_10524792.1| tRNA-dihydrouridine synthase A [Leptospira kirschneri serovar Bim
str. 1051]
gi|418677492|ref|ZP_13238768.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687110|ref|ZP_13248273.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741589|ref|ZP_13297963.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090016|ref|ZP_15550817.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
200802841]
gi|421131812|ref|ZP_15591989.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
2008720114]
gi|400322440|gb|EJO70298.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410001279|gb|EKO51893.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
200802841]
gi|410356748|gb|EKP04054.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str.
2008720114]
gi|410738506|gb|EKQ83241.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410751037|gb|EKR08016.1| tRNA dihydrouridine synthase A [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 347
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 185/300 (61%), Gaps = 8/300 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ +++ G+ R L++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVLH--GDRSRLLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG++ LA+ +++ Y Y EINLN GCPS +V G FG LM P+ V E +
Sbjct: 73 GGNDPKALAECSKIGEDYGYTEINLNVGCPSDRVK-EGNFGACLMETPEKVAELTFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++P++VKCRIG+ D++ LC FI V + R FI+H+R A+L G +PA+NR +P
Sbjct: 132 SVSIPITVKCRIGIPGKDTFEDLCKFIECVRQ-TGVRRFIVHARIAILGGFTPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y Y +L ++FPDL +NGG+ T+ + L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYTYVESLKKEFPDLLIEINGGVRTLTSIRERLEKN-DGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G L+RR+V+ + + Y + ++ N +PH ++ +L F+ E G F+R
Sbjct: 249 SLFFGENLPPLSRREVLLRMKDYIEEVILKEKNGKPH--HALRHILGLFYGEKGARSFRR 306
>gi|82546382|ref|YP_410329.1| tRNA-dihydrouridine synthase A [Shigella boydii Sb227]
gi|417684897|ref|ZP_12334230.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|420327529|ref|ZP_14829273.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|420355686|ref|ZP_14856742.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|420383439|ref|ZP_14882851.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|421684504|ref|ZP_16124289.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
gi|81247793|gb|ABB68501.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332087840|gb|EGI92966.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|391247559|gb|EIQ06807.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|391271109|gb|EIQ29985.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|391296500|gb|EIQ54590.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|404336104|gb|EJZ62567.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDAYPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|62182692|ref|YP_219109.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168821313|ref|ZP_02833313.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586008|ref|YP_002639807.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375117045|ref|ZP_09762215.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|409247917|ref|YP_006888609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|62130325|gb|AAX68028.1| putative TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205342153|gb|EDZ28917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470536|gb|ACN48366.1| hypothetical protein SPC_4304 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088651|emb|CBY98409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322717191|gb|EFZ08762.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 332
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 186/327 (56%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|440289524|ref|YP_007342289.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049046|gb|AGB80104.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 331
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKTHLQH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ V + +L F PG ++
Sbjct: 248 DREIFGVEGADTDPVAVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|297582262|ref|ZP_06944177.1| TIM-barrel protein [Vibrio cholerae RC385]
gi|297533520|gb|EFH72366.1| TIM-barrel protein [Vibrio cholerae RC385]
Length = 327
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGVFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|283787222|ref|YP_003367087.1| tRNA-dihydrouridine synthase A [Citrobacter rodentium ICC168]
gi|282950676|emb|CBG90350.1| putative tRNA-dihydrouridine synthase A [Citrobacter rodentium
ICC168]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSGEEHPLALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAQLAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 NTVSIPVTVKTRIGIDDQDSYEFLCDFIDTVSGHGECETFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++ E A L VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLAEAKAHLEH-MDGVMVGREAYQNPG-ILASV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G S VV Y + L +N ++ + + +L F PG ++
Sbjct: 262 DREIFGVDSPDADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|331680980|ref|ZP_08381617.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
gi|331081201|gb|EGI52362.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|422972569|ref|ZP_16975396.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
gi|371597806|gb|EHN86625.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA++ E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYNEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|189350413|ref|YP_001946041.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|189334435|dbj|BAG43505.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
Length = 344
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 187/314 (59%), Gaps = 15/314 (4%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LA
Sbjct: 1 MSASSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLA 58
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 59 FTPNESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 117
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + +VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L
Sbjct: 118 QLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCS-TFIVHARNAIL 176
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L R+FP L +NGGI T+DEV L VM+GR A
Sbjct: 177 KGLSPKENREIPPLKYDYAYRLKREFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREA 235
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLL 297
Y NP Y L VD YG+ + TR + + Y A L GTY + +++ L
Sbjct: 236 YHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHAL 288
Query: 298 HFFHSEPGNGLFKR 311
+ PG ++R
Sbjct: 289 GLYRGVPGARGWRR 302
>gi|444358841|ref|ZP_21160214.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
gi|443603248|gb|ELT71271.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
Length = 344
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 15/308 (4%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P +
Sbjct: 7 LPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSES 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PI LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 65 PIALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP
Sbjct: 124 VKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-Y 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD YG+ ++ TR + + Y A L GTY + +++ L +
Sbjct: 241 VLAEVDARFYGSTAAVPTREEAEAQLIAYCAAELKRGTY------LGAIVRHALGLYRGM 294
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 295 PGARGWRR 302
>gi|420339091|ref|ZP_14840642.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
gi|391256784|gb|EIQ15907.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDAYPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|416900741|ref|ZP_11929910.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|417116352|ref|ZP_11967213.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
gi|422801769|ref|ZP_16850264.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|323965711|gb|EGB61163.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|327250393|gb|EGE62106.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|386138896|gb|EIG80051.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAETRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|396384|gb|AAC43143.1| ORF_o345 [Escherichia coli str. K-12 substr. MG1655]
Length = 345
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAXXVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|292490501|ref|YP_003525940.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
gi|291579096|gb|ADE13553.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
Length = 340
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YL S+APMM+WTD H R RLIS HA LYTEM+ +I+ G+ +RFLA+ P +H
Sbjct: 17 YLSRRVSIAPMMEWTDRHCRYFLRLISHHALLYTEMVTTGALIH--GDRERFLAYHPTEH 74
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ +Q+GGSN + LA LA + +DE+NLN GCPS +V G FG LM++P+ V E
Sbjct: 75 PLAVQLGGSNPEELAFCARLAEDHGFDEVNLNVGCPSDRVQS-GRFGACLMMEPELVAEC 133
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ +A +PV+VK RIGVD+ DSY L FI VS + R FI+H+RKA L G+SP
Sbjct: 134 VAAMAQTVQLPVTVKTRIGVDEQDSYEALTRFINTVSQ-AGCRTFILHARKAWLQGLSPK 192
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR PPL+YE A+ +DFP L +NGGI T++E L +M+GRAAY NP Y
Sbjct: 193 ENREKPPLRYEVVRAIKQDFPHLEVVINGGIATLEEAQEQLTL-LDGIMIGRAAYHNP-Y 250
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD YG TR ++E + Y + L G Y + + + +L F +
Sbjct: 251 LLAQVDRYFYGDFHPLPTRHGIMEAFLPYVEEQLAQGIY------LSRITRHILGLFQGQ 304
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 305 PGARAWRR 312
>gi|153839570|ref|ZP_01992237.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
gi|149746903|gb|EDM57891.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
Length = 326
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y + L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMYPYIETQLA----KGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|170021953|ref|YP_001726907.1| tRNA-dihydrouridine synthase A [Escherichia coli ATCC 8739]
gi|251787304|ref|YP_003001608.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253775323|ref|YP_003038154.1| tRNA-dihydrouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254290735|ref|YP_003056483.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300929788|ref|ZP_07145240.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|312974158|ref|ZP_07788329.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|386707290|ref|YP_006171137.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|422767922|ref|ZP_16821647.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|422787897|ref|ZP_16840634.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|422793652|ref|ZP_16846347.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|425307883|ref|ZP_18697539.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|432487842|ref|ZP_19729744.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|432578320|ref|ZP_19814762.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|433175983|ref|ZP_20360478.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
gi|169756881|gb|ACA79580.1| TIM-barrel protein, yjbN family [Escherichia coli ATCC 8739]
gi|242379577|emb|CAQ34398.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253326367|gb|ACT30969.1| TIM-barrel protein, yjbN family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253980042|gb|ACT45712.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300462294|gb|EFK25787.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|310331692|gb|EFP98948.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|323935538|gb|EGB31869.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|323960455|gb|EGB56088.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|323969817|gb|EGB65098.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|383105458|gb|AFG42967.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|408224213|gb|EKI47936.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|431012815|gb|ELD26575.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|431110668|gb|ELE14586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|431685672|gb|ELJ51240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
Length = 345
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|206559989|ref|YP_002230753.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
gi|198036030|emb|CAR51923.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
Length = 353
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 184/308 (59%), Gaps = 15/308 (4%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P +
Sbjct: 16 LPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSES 73
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
PI LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 74 PIALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADC 132
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP
Sbjct: 133 VKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPK 191
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y
Sbjct: 192 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-Y 249
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD YG+ ++ TR + + Y A L GTY + +++ L +
Sbjct: 250 VLAEVDARFYGSTAAVPTREEAEAQLIAYCAAELKRGTY------LGAIVRHALGLYRGM 303
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 304 PGARGWRR 311
>gi|168231239|ref|ZP_02656297.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470364|ref|ZP_03076348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456728|gb|EDX45567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334267|gb|EDZ21031.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 332
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 186/327 (56%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA ++ VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 305 RYLSENAHKAGADVAVLEQALKLVADK 331
>gi|422832678|ref|ZP_16880747.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|432414540|ref|ZP_19657183.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|432634945|ref|ZP_19870839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
gi|371614827|gb|EHO03310.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|430946293|gb|ELC66236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|431175589|gb|ELE75591.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
Length = 345
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|194437343|ref|ZP_03069441.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
gi|194423899|gb|EDX39888.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
Length = 345
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YGSSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|114046253|ref|YP_736803.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-7]
gi|113887695|gb|ABI41746.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-7]
Length = 340
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 197/339 (58%), Gaps = 18/339 (5%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A++ + FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 IAQESIDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G
Sbjct: 128 VAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL Y+ Y L RD+ L ++NGGI ++++ L+ VMVGR AYQ
Sbjct: 187 LSPKENREIPPLDYDRVYQLKRDYSTLNISINGGITSLEQAKTHLQH-LDGVMVGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L G + + + ++ F
Sbjct: 246 NP-YILAQVDQLLCGSQKAVISREAVIEAMLPYIEAHLQAGGR----LNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR-------KADAAFQTCKTVKSFLEETIVA 333
PG ++R K A + K ++ I+A
Sbjct: 301 GLPGARAWRRYLSENAHKNGAGIEVVKQAYQSIQSEIIA 339
>gi|373950890|ref|ZP_09610851.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
gi|386323276|ref|YP_006019393.1| yjbN family TIM-barrel protein [Shewanella baltica BA175]
gi|333817421|gb|AEG10087.1| TIM-barrel protein, yjbN family [Shewanella baltica BA175]
gi|373887490|gb|EHQ16382.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
Length = 339
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A + L FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 LAPKTLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G
Sbjct: 128 VAECVDAMKQVIDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL YE Y L RD+P L +NGG+ T+++ L + VM+GR AYQ
Sbjct: 187 LSPKENREIPPLDYERVYQLKRDYPTLNIGINGGVTTLEQAQLHLAQ-LDGVMMGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L + G + + + ++ F
Sbjct: 246 NP-YILAQVDQVLCGSQKAVISREDVIEAMLPYIEAHLLSGG----RLNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 301 GLPGARAWRR 310
>gi|269964431|ref|ZP_06178672.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
gi|269830769|gb|EEZ84987.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
Length = 354
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 35 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 91
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 92 LGGSNPADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 150
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 151 DVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 210
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L V
Sbjct: 211 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASV 268
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F S PG ++
Sbjct: 269 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWR 324
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 325 RHISENAHKPGSGLEVLQDALAKIPKEL 352
>gi|298707058|emb|CBJ29860.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 379
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 209/362 (57%), Gaps = 28/362 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMM TD ++R L R +S+ + LYTEM +T+++QQ NL FL+ + P+ +Q
Sbjct: 10 FSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMYVDKTLLHQQDNLHNFLSHRAAEGPLAVQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE-AMSVI 129
+GG++ D LA+A E+ + + EINLNCGCPS KV+ CFG LMLDP+ V E +I
Sbjct: 70 LGGNDPDTLAEAAEMCEQWAFSEINLNCGCPSSKVSDR-CFGARLMLDPERVREITYGMI 128
Query: 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
T PV+VKCRIGVDD DSY++L F+ V + + H ++H+RK LL G+S + NRT
Sbjct: 129 RKVTRTPVTVKCRIGVDDKDSYDELTTFVRAVKA-AGIDHVVVHARKCLLKGLSTSANRT 187
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---------HVMVGRAAY 240
IPPL+Y+ + L ++FP+L LNGGI+++ VN + VMVGRAAY
Sbjct: 188 IPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHITGTGEWGEYGGGVAGVMVGRAAY 247
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL------GTYGNNRPH--VRDV 292
+PW T H D+A++G+ G TRR+++E+ ++ G N H + V
Sbjct: 248 FDPW-TFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTV 306
Query: 293 MKPLLHFFHSEPGNGLFKRKADAAFQTCKTV-------KSFLEETIVAIPDSVLDSPIEE 345
KPL + G+ F+++ A Q + + ++ + +P+ VLD P+ +
Sbjct: 307 TKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGD 366
Query: 346 AP 347
P
Sbjct: 367 TP 368
>gi|213859447|ref|ZP_03385151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 284
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSS 260
L VD I+GA ++
Sbjct: 244 ILAAVDREIFGADTT 258
>gi|416338796|ref|ZP_11674797.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|432799971|ref|ZP_20033970.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
gi|320193408|gb|EFW68045.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|431353327|gb|ELG40081.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
Length = 331
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++ E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLGEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|432367623|ref|ZP_19610732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|432528952|ref|ZP_19766017.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|432668481|ref|ZP_19904044.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
gi|430890145|gb|ELC12782.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|431058914|gb|ELD68291.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|431215501|gb|ELF13189.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
Length = 345
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|194432327|ref|ZP_03064615.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|416286014|ref|ZP_11648112.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|417692540|ref|ZP_12341734.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
gi|194419530|gb|EDX35611.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|320179045|gb|EFW54004.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|332083541|gb|EGI88761.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
Length = 339
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +L A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLVEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|290512395|ref|ZP_06551762.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
gi|289775390|gb|EFD83391.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
Length = 331
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGIAGADADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|206576636|ref|YP_002241010.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
gi|206565694|gb|ACI07470.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
Length = 332
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 72 LGGSDPQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++DE L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVWQLKRDFPHLTMAINGGIKSLDEARLQLEH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 249 DREIFGIAGADADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|449146249|ref|ZP_21777038.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078095|gb|EMB49040.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 327
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECIAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 SVVDIPVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + R+FP LT +NGG+ T++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRNFPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|78066180|ref|YP_368949.1| tRNA-dihydrouridine synthase A [Burkholderia sp. 383]
gi|77966925|gb|ABB08305.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia sp. 383]
Length = 344
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 183/308 (59%), Gaps = 15/308 (4%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAF+P +
Sbjct: 7 LPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFTPNES 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P V +
Sbjct: 65 PVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPSLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + +VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP
Sbjct: 124 VKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L + VM+GR AY NP Y
Sbjct: 183 ENREIPPLKYDYAYQLKRDFPSLEIVINGGITTLDEVAQHL-EHVDGVMLGREAYHNP-Y 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD YG+ + TR + K Y A L GTY + +++ L +
Sbjct: 241 VLAEVDARFYGSTEAVPTREEAEAKLIEYCAAELKRGTY------LGAIVRHALGLYRGM 294
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 295 PGARGWRR 302
>gi|336316388|ref|ZP_08571287.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
gi|335879257|gb|EGM77157.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
Length = 333
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 183/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+HA LYTEM+ IIY QG+ +L F+ E+HP+V+Q
Sbjct: 18 FSIAPMLDWTDKHCRYFHRLLSEHAVLYTEMVTTGAIIYGQGD---YLGFNDEEHPVVVQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A + +L YD IN+N GCPS +V +G FG LM P+ V + +
Sbjct: 75 LGGSDSKDMAHSAKLCQERGYDAININVGCPSDRVQ-NGMFGACLMARPELVAACIHEMR 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DDHDSY L DFI ++ S FI+H+RKA L+G+SP ENR I
Sbjct: 134 AVVDIPVTVKSRIGIDDHDSYQFLVDFIGTIAE-SGCNQFIVHARKAWLSGLSPKENREI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFP L ++NGG+ T+ + L+ VMVGR AY NP L +
Sbjct: 193 PPLDYERVYQLKKDFPHLDISINGGVKTLADCLTHLQH-VDGVMVGREAYSNP-LMLAQI 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D AIY P + T QVVE Y + + T G H + + +L F PG L++
Sbjct: 251 DAAIYNNPRAVPTPHQVVELMLPYIERQM-TQGARFWH---IARHMLGLFQGVPGARLWR 306
Query: 311 R 311
R
Sbjct: 307 R 307
>gi|307132468|ref|YP_003884484.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
gi|306529997|gb|ADM99927.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
Length = 346
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S +A LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 30 FSVAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGD---YLAYSDEEHPLALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 87 LGGSDPAALAQCAVLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEAQLVADCVTAMR 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FI+H+RKA L+G+SP ENR I
Sbjct: 146 ERVDIPVTVKTRIGIDDQDSYAFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREI 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T+ E L+ VMVGR AYQNP L V
Sbjct: 206 PPLDYPRVYQLKRDFPSLTLAINGGVKTLAEARQHLQH-VDGVMVGREAYQNPG-MLAQV 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++GA S+ + VV Y + L + G + H + + +L F PG ++
Sbjct: 264 DRELFGADSAAPDQADVVRAMYPYIEREL-SAGASLGH---ITRHMLGLFQGLPGARQWR 319
Query: 311 R 311
R
Sbjct: 320 R 320
>gi|407713533|ref|YP_006834098.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
gi|407235717|gb|AFT85916.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
Length = 316
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 173/268 (64%), Gaps = 8/268 (2%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R+L R+IS+H WLYTEM+ +++ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLH--GDVPRHLAFTPDEAPVALQLGGSEP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
D+LA++ +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +VP
Sbjct: 59 DDLARSAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSVP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIGVD + Y+ + DF+ ++ + FI+H+R A+L G+SP ENR IPPLKY+
Sbjct: 118 VTVKHRIGVDAVEDYSFVRDFVGTIAQ-AGCEVFIVHARNAILKGLSPKENREIPPLKYD 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y Y L RDFP L +NGGI T+DEV L+ VM+GR AY +P Y L VD YG
Sbjct: 177 YAYRLKRDFPQLEIVINGGIKTLDEVETHLQH-VDGVMLGREAYHHP-YLLADVDARFYG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAIL--GTY 282
+ + LTR QV K Y A + GTY
Sbjct: 235 SSEAPLTREQVEAKLVEYCAAEMARGTY 262
>gi|331655869|ref|ZP_08356857.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
gi|331046223|gb|EGI18313.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
Length = 345
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PALDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIECELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|326795079|ref|YP_004312899.1| yjbN family TIM-barrel protein [Marinomonas mediterranea MMB-1]
gi|326545843|gb|ADZ91063.1| TIM-barrel protein, yjbN family [Marinomonas mediterranea MMB-1]
Length = 348
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 184/309 (59%), Gaps = 9/309 (2%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+R + FSVAPM+DWT YR AR ++KH LYTEM+ I+ Q N +RFL +
Sbjct: 16 SRDTIDRRFSVAPMLDWTTRDYRVFARTLTKHTLLYTEMVTTGAIL-QGDNPERFLKYDD 74
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
+HPI LQ+GGS+ LA ++A ++YDE+NLN GCPS +V + G LM P V
Sbjct: 75 CEHPIALQLGGSDAVALATCAKIAETFHYDEVNLNVGCPSDRVQ-NSLIGACLMAYPDKV 133
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + T++PV++K RIG+DD Y+ L DF+ V+ + + FI+H+R A+L G+
Sbjct: 134 ADILKAMQDATSIPVTIKHRIGLDDQQEYSILRDFVGTVAD-TGIQTFIVHARNAILQGL 192
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPLKY+Y Y L +DFPDL +NGGI T+DE + L VM+GR AY N
Sbjct: 193 SPKENREIPPLKYDYVYQLKKDFPDLEIIINGGIKTIDETISHL-DHVDGVMMGREAYNN 251
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
PW L +DT +YGA + R + +E++ Y + L G H + + +L FH
Sbjct: 252 PW-ILSDIDTKVYGASACVNNRFEALERFVPYVEEQLAK-GERLMH---MTRHILGIFHG 306
Query: 303 EPGNGLFKR 311
PG F+R
Sbjct: 307 LPGGKQFRR 315
>gi|295689004|ref|YP_003592697.1| YjbN family TIM-barrel protein [Caulobacter segnis ATCC 21756]
gi|295430907|gb|ADG10079.1| TIM-barrel protein, yjbN family [Caulobacter segnis ATCC 21756]
Length = 339
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 179/306 (58%), Gaps = 9/306 (2%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
+ P FSVAPMMDWTD H R+L R++S A LYTEM+ + +++ G+ ++ L F QH
Sbjct: 5 FQPARFSVAPMMDWTDRHCRSLHRVLSSRALLYTEMVTSGAVVH--GDREKLLGFDAGQH 62
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LA+A + + YDEINLN GCPS +V G FG LM +P V E
Sbjct: 63 PVALQLGGSDPADLAQAARIGEDWGYDEINLNVGCPSDRVQS-GRFGACLMREPNLVAEC 121
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
M+ I VP +VKCRIGVDD D L + + ++ + +FI+H+RKA L G+SP
Sbjct: 122 MAAIKDAVKVPATVKCRIGVDDQDPEESLFTLVDRCAA-AGIDNFIVHARKAWLQGLSPK 180
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL YE Y L R+ P+LT +NGG+ +VD L G VM+GRAAY
Sbjct: 181 ENRDIPPLDYELVYRLKRERPNLTIAINGGVPSVDAALEHLANGVDGVMLGRAAYHEAGL 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
LG VD ++G + + + VE+Y+ Y L H+ + + +L FH PG
Sbjct: 241 -LGEVDRRVFGLDVADVDSFEAVERYRPY----LARELAAGTHLAAMTRHMLGLFHGLPG 295
Query: 306 NGLFKR 311
++R
Sbjct: 296 ARAWRR 301
>gi|419958727|ref|ZP_14474788.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606395|gb|EIM35604.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 331
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++DE A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGVEGADTDPVAVVRAMYPYIERELSHGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|260599558|ref|YP_003212129.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
gi|260218735|emb|CBA34083.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
Length = 349
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 181/305 (59%), Gaps = 18/305 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S A LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 32 FSIAPMLDWTDRHCRYFLRQLSSQALLYTEMVTTGAIIHGKGD---YLAYSDEEHPVALQ 88
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 89 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 147
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 148 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 207
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT ++NGGI T+D+V A L AH VMVGR AYQNP L
Sbjct: 208 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKAHL---AHMDGVMVGREAYQNPGL-LA 263
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
VD I+G + VV Y G+ GTY + V + +L F PG
Sbjct: 264 SVDREIFGLDTPDADPVAVVRAMYPYIEGERAKGTY------LGHVTRHMLGLFQGIPGA 317
Query: 307 GLFKR 311
++R
Sbjct: 318 RQWRR 322
>gi|417675401|ref|ZP_12324824.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|420350227|ref|ZP_14851584.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
gi|332084336|gb|EGI89539.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|391262910|gb|EIQ21921.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
Length = 345
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +L A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLVEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|421727638|ref|ZP_16166798.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
gi|410371607|gb|EKP26328.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
Length = 331
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 184/327 (56%), Gaps = 10/327 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y +Y L RDFP LT +NGGI +++E L VMVGR AYQNP L V
Sbjct: 190 PPLDYPLFYQLKRDFPHLTMAINGGIKSLEEAKLHLEH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G VV Y + L +N ++ V + +L F PG ++
Sbjct: 248 DREIFGVDGVDADPVSVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDS 337
R + LE+ + + D
Sbjct: 304 RYLSENAHKAGADINVLEQALKLVADK 330
>gi|217971989|ref|YP_002356740.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS223]
gi|217497124|gb|ACK45317.1| TIM-barrel protein, yjbN family [Shewanella baltica OS223]
Length = 339
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 190/310 (61%), Gaps = 11/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A + L FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +LA++
Sbjct: 12 LAPKTLDRTFSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYN 68
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+
Sbjct: 69 QEEHPLALQLGGSNPVDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPEL 127
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V E + + ++PV+VK RIG+D+ DSY L FI VS+ T F IH+RKA L G
Sbjct: 128 VAECVDAMKQVVDIPVTVKTRIGIDEQDSYAFLTQFIDVVSAKGCT-DFTIHARKAWLQG 186
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL YE Y L RD+P L +NGG+ T+++ L + VM+GR AYQ
Sbjct: 187 LSPKENREIPPLDYERVYQLKRDYPALNIGINGGVTTLEQAQLHLAQ-LDGVMMGREAYQ 245
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP Y L VD + G+ + ++R V+E Y +A L + G + + + ++ F
Sbjct: 246 NP-YILAQVDQVLCGSQKAVISREDVIEVMLPYIEAHLLSGG----RLNHITRHMIGLFQ 300
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 301 GLPGARAWRR 310
>gi|432443665|ref|ZP_19685986.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|432448740|ref|ZP_19691034.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|433016399|ref|ZP_20204716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|433025981|ref|ZP_20213940.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|433326392|ref|ZP_20403233.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|450196390|ref|ZP_21892861.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
gi|430960263|gb|ELC78419.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|430970425|gb|ELC87497.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|431525308|gb|ELI02105.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|431529138|gb|ELI05841.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|432345486|gb|ELL39989.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|449315504|gb|EMD05646.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
Length = 331
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|261866807|ref|YP_003254729.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|416106965|ref|ZP_11590157.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444347209|ref|ZP_21155154.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412139|gb|ACX81510.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348005862|gb|EGY46331.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443540777|gb|ELT51304.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 327
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ A + +T R+ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFNANAPIVTPREAVEKMLPYIEQQLSRGVYLNH------IVRHILSAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T F+E
Sbjct: 300 WRRYLSENAYKEGAGIEVVETALGFVE 326
>gi|444428866|ref|ZP_21224162.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237906|gb|ELU49549.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 326
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 190/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNAADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 DVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQY-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F S PG ++
Sbjct: 241 DQELFGSNTPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|340001601|ref|YP_004732485.1| hypothetical protein SBG_3688 [Salmonella bongori NCTC 12419]
gi|339514963|emb|CCC32734.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 381
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 187/329 (56%), Gaps = 14/329 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 64 FSVAPMLDWTDRHCRYFLRLLSHQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 120
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +++ +
Sbjct: 121 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGLFGACLMGNAQLVADSIKAMR 179
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 180 DVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGRGECETFIIHARKAWLSGLSPKENREI 239
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++ E L K VMVGR AYQNP L V
Sbjct: 240 PPLDYPRVYQLKRDFPHLTLSINGGIKSLAEAKEHL-KYMDGVMVGREAYQNPG-ILAAV 297
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+GA ++ + VV Y + L GTY + + + +L F PG
Sbjct: 298 DREIFGADTAEVDPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 351
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R LE+ + + D
Sbjct: 352 WRRYLSENAHKAGADIRVLEQALQLVADK 380
>gi|295095415|emb|CBK84505.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 331
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAHLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++DE A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGITSLDEAKAHLEH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGVDGADTDPVAVVRAMYPYIERELSHGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|288940773|ref|YP_003443013.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
gi|288896145|gb|ADC61981.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
Length = 310
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 179/297 (60%), Gaps = 10/297 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RLIS+H LYTEM+ +I+ G+ +RFL + P +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLISRHTLLYTEMITTGALIH--GDRERFLRYDPAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LA+ +A + YDEINLN GCPS +V +G FG LM +P V E ++ + A V
Sbjct: 59 SEDLARCARMAEEWGYDEINLNVGCPSDRVQ-NGRFGACLMAEPVLVAECVTAMRAAVRV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D+ DSY +L DF+ ++S + I+H+RKA L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDERDSYAELVDFVGRLSE-AGCDAIIVHARKAWLKGLSPKENRDIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E L RDFP L +NGGI T+D L VM+GRAAY NPW L D ++
Sbjct: 177 EIVRDLKRDFPQLPIVINGGIETLDAAVDFL-SDLDGVMIGRAAYHNPW-ILAEADRRVF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
G TRRQV+E + Y + L P + + + LL F +PG ++R+
Sbjct: 235 GDTHPAPTRRQVLEAFIPYAERQLAA---GVP-LNAMSRHLLGLFQGQPGARAWRRR 287
>gi|345297462|ref|YP_004826820.1| yjbN family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345091399|gb|AEN63035.1| TIM-barrel protein, yjbN family [Enterobacter asburiae LF7a]
Length = 331
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKSLEEAKAHLGH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DREIFGVEGADTDPVSVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|377579682|ref|ZP_09808646.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377538999|dbj|GAB53811.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 332
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCEFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI ++++ A L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGITSLEQAKAHLEH-MDGVMVGREAYQNPG-MLAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L + ++ + + +L F PG ++
Sbjct: 249 DREIFGVAGASPDPVSVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGVPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|438047594|ref|ZP_20856075.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435319672|gb|ELO92477.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 304
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
D I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 249 DREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
>gi|424143901|ref|ZP_17875730.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
gi|390695683|gb|EIN70198.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
Length = 339
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L DFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKHDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|387614780|ref|YP_006117896.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
gi|309704516|emb|CBJ03865.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
Length = 345
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/308 (44%), Positives = 184/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|309787535|ref|ZP_07682147.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
gi|308925113|gb|EFP70608.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
Length = 339
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|308051003|ref|YP_003914569.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
gi|307633193|gb|ADN77495.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
Length = 324
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 194/331 (58%), Gaps = 11/331 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD HYR ARLIS+ A LYTEM+ II+ +G+ +L F+ E+HP+ LQ
Sbjct: 5 FSVAPMLDWTDRHYRYFARLISRQALLYTEMVTTGAIIHGKGD---YLGFNEEEHPVALQ 61
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + + +
Sbjct: 62 LGGSNPADLAHCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVKAMQ 120
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V+S + F IH+RKA L G+SP ENR I
Sbjct: 121 DVVSIPVTVKTRIGIDEQDSYEFLTRFIDTVAS-AGCDIFTIHARKAWLQGLSPKENREI 179
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y+ Y + RDF L ++NGGI T+++ A L+ VMVGR AYQNP Y + V
Sbjct: 180 PELIYDRAYQVKRDFAHLNISVNGGITTLEQCEAHLQH-LDGVMVGREAYQNP-YMMAEV 237
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +YG L+R +VVE+ Y L + +N V + +L F+ PG ++
Sbjct: 238 DQRLYGDDRPVLSRAEVVEQMIPY----LERHISNGGRANHVTRHMLGLFNGMPGARQWR 293
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
R L + + ++P++ ++
Sbjct: 294 RYLAQNAHLPGMGAELLADALASMPEAAREA 324
>gi|386312475|ref|YP_006008640.1| yjbN family TIM-barrel protein [Shewanella putrefaciens 200]
gi|319425100|gb|ADV53174.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens 200]
Length = 343
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 185/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 25 FSIAPMLDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 82 LGGSNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V++ T F IH+RKA L G+SP ENR I
Sbjct: 141 QVVDIPVTVKTRIGIDEQDSYEFLTYFIDIVNAKGCT-DFTIHARKAWLQGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L ++NGG+ T+++ L + VM+GR AYQNP Y L V
Sbjct: 200 PPLDYERVYQLKRDYPVLNISINGGVTTLEQAQGHLSQ-LDGVMMGREAYQNP-YILARV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 258 DQVLCGSQRAVISREDVIEAMLPYIEAHLQAGG----RLNHITRHMIGLFQGLPGARAWR 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|45656544|ref|YP_000630.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|294828345|ref|NP_713734.2| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. 56601]
gi|386075284|ref|YP_005989604.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. IPAV]
gi|417763323|ref|ZP_12411302.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000624]
gi|45599779|gb|AAS69267.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|293386197|gb|AAN50752.2| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. 56601]
gi|353459076|gb|AER03621.1| tRNA-dihydrouridine synthase A [Leptospira interrogans serovar Lai
str. IPAV]
gi|409940800|gb|EKN86438.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000624]
Length = 347
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 194/329 (58%), Gaps = 9/329 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ +++ G+ + L++SPE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMVHTGAVLH--GDRRKLLSYSPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS+ LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E +
Sbjct: 73 GGSDPKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +P
Sbjct: 132 SVSIPITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL Y Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD
Sbjct: 191 PLHYTYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ +G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 249 SLFFGENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRK 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 307 ILTEGMYSGYS-KDLLSKAIQEISNDSLD 334
>gi|146309919|ref|YP_001174993.1| tRNA-dihydrouridine synthase A [Enterobacter sp. 638]
gi|145316795|gb|ABP58942.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter sp. 638]
Length = 331
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAECAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADGIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFIDTVAGKGECETFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKTHLQH-MDGVMVGREAYQNPG-ILATV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ V + +L F PG ++
Sbjct: 248 DREIFGIEGADSDPVAVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|82779541|ref|YP_405890.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae Sd197]
gi|81243689|gb|ABB64399.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 345
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|229525073|ref|ZP_04414478.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229338654|gb|EEO03671.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 327
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 183/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPAALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>gi|343499074|ref|ZP_08737071.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418479481|ref|ZP_13048562.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823463|gb|EGU58091.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384572880|gb|EIF03385.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 333
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 182/307 (59%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y FS+APM+DWTD H R RL++ LYTEM+ II+ +G+ FLA++ ++
Sbjct: 8 KYSANRFSIAPMLDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGD---FLAYNQQE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
H + LQ+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V E
Sbjct: 65 HSVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAE 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+S + +VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP
Sbjct: 124 CVSAMRDVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y Y L +DF LT +NGG+ T++E L+ VMVGR AYQNP
Sbjct: 184 KENREIPPLDYPRAYQLKKDFSHLTIAINGGVKTLEESKEHLQH-LDGVMVGREAYQNP- 241
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L +VD I+G R QVVE+ Y + L + ++ + + +L F + P
Sbjct: 242 YILANVDQEIFGLDKPVKKRSQVVEEMYPYIEQQL----SQGAYLGHITRHMLGLFQNMP 297
Query: 305 GNGLFKR 311
G ++R
Sbjct: 298 GARQWRR 304
>gi|293417553|ref|ZP_06660175.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
gi|291430271|gb|EFF03269.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
Length = 345
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSYTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|312884652|ref|ZP_07744353.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367565|gb|EFP95116.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 333
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL++ A LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRFFHRLLTNEALLYTEMVTTGAIIHGKGD---FLAYNQEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 71 LGGSNPQDLAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ V+ F IH+RKA L+G+SP +NR I
Sbjct: 130 EVVDIPVTVKTRIGIDDQDSYQFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSPKQNREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF L +NGG+ T+ E L VM+GR AYQNP Y L V
Sbjct: 190 PPLDYPRAYQLKKDFSHLNIAINGGVKTLQESQEHLVH-LDGVMMGREAYQNP-YILAQV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA S R QVVE+ Y + L + ++ + + +L F + PG ++
Sbjct: 248 DQLIFGADSPIKKRSQVVEEMYPYIEQQL----SQGAYLGHITRHMLGLFQNMPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|297624812|ref|YP_003706246.1| yjbN family TIM-barrel protein [Truepera radiovictrix DSM 17093]
gi|297165992|gb|ADI15703.1| TIM-barrel protein, yjbN family [Truepera radiovictrix DSM 17093]
Length = 354
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 195/336 (58%), Gaps = 14/336 (4%)
Query: 8 PPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
PP+ SVAPMMDWTD HYR R +++ LYTEM+ ++ +G+ +R L FS + P
Sbjct: 6 PPYPLSVAPMMDWTDRHYRAFMRGVTRRTLLYTEMVHVNAVL--RGDRERVLGFSEFEKP 63
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GG + LA +A + Y E+NLN GCPSP+V G FG LM P+ V +
Sbjct: 64 LALQLGGDDPRKLAACARVAEDWGYSELNLNVGCPSPRVQ-RGNFGACLMAQPERVAACV 122
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ + T +PV+VK RIG+DD D ++ L F+ V+ +P R F +H+RKA L+G+SP E
Sbjct: 123 AAMREATTLPVTVKHRIGIDDRDRFDDLAHFVEVVAQAAPAR-FTVHARKAWLSGLSPKE 181
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NRT+PPL+YE Y L R P+L LNGG+ +++ A L + VM+GRAAY++P Y
Sbjct: 182 NRTVPPLRYEEVYQLKRLHPELEIELNGGVRSLEAAAAHLGR-VDAVMIGRAAYEDP-YA 239
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L D YGAP TRR+VVE + Y L + + + LL F PG
Sbjct: 240 LARADALFYGAPHVP-TRREVVEAFLPYASRQL----ERGVPLASLTRHLLGLFTGAPGA 294
Query: 307 GLFKR-KADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
++R ++ A Q V+ LE + A+PD VLD+
Sbjct: 295 RAWRRLLSEQAHQPGAGVE-VLERALGALPDEVLDA 329
>gi|423728349|ref|ZP_17702088.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
gi|424150269|ref|ZP_17881622.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390696874|gb|EIN71315.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390736081|gb|EIO07432.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
Length = 345
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L DFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKHDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|365966626|ref|YP_004948188.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416089350|ref|ZP_11587907.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349254|ref|ZP_21156747.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348009398|gb|EGY49552.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745539|gb|AEW76444.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443545071|gb|ELT54935.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 327
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ A + +T R+ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFNANAPIVTPREAVEKMLPYIEQQLSRGVYLNH------IVRHILSAFQHCKGALQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T F+E
Sbjct: 300 WRRYLSENAYKEGAGIEVVETALGFVE 326
>gi|120600206|ref|YP_964780.1| tRNA-dihydrouridine synthase A [Shewanella sp. W3-18-1]
gi|120560299|gb|ABM26226.1| TIM-barrel protein, yjbN family [Shewanella sp. W3-18-1]
Length = 343
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 185/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 25 FSIAPMLDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 82 LGGSNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V++ T F IH+RKA L G+SP ENR I
Sbjct: 141 QVVDIPVTVKTRIGIDEQDSYEFLTYFIDIVNAKGCT-DFTIHARKAWLQGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L ++NGG+ T+++ L + VM+GR AYQNP Y L V
Sbjct: 200 PPLDYERVYQLKRDYPVLNISINGGVTTLEQAQGHLAQ-LDGVMMGREAYQNP-YILARV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 258 DQVLCGSQRAVISREDVIEAMLPYIEAHLQAGG----RLNHITRHMIGLFQGLPGARAWR 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|392546833|ref|ZP_10293970.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas rubra ATCC 29570]
Length = 337
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 193/328 (58%), Gaps = 15/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R +++HA LYTEM+ II+ +G+ +L F + P+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRTFHRKLTQHAVLYTEMITTGAIIFGKGD---YLHFGEHEMPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ + A Y Y+E+NLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 79 LGGSDPKALAECAKRAEQYGYNEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMK 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L I S + FIIH+RKA L G+SP ENR I
Sbjct: 138 GEVSIPVTVKTRIGIDEQDSYEFLTRLI-DASKTAGCDDFIIHARKAWLQGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y L +D+ DL ++NGG+ T++E L AH VM+GR AY NP + L
Sbjct: 197 PPLDYPRVYKLKQDYSDLHISINGGVKTIEECQHHL---AHLDGVMIGREAYSNP-FMLA 252
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD+A+YGAP+ TR QVV Y +A + + G N H + + +L F ++PG
Sbjct: 253 EVDSALYGAPAFTQTRHQVVRSMYDYIEAEM-SKGANFWH---IARHMLGIFQNQPGARG 308
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
F+R S +E+ + +P+
Sbjct: 309 FRRHLSENGHGKSADISVMEKALTFVPE 336
>gi|422783599|ref|ZP_16836383.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
gi|323975321|gb|EGB70424.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
Length = 345
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAETRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDLDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|333907912|ref|YP_004481498.1| yjbN family TIM-barrel protein [Marinomonas posidonica IVIA-Po-181]
gi|333477918|gb|AEF54579.1| TIM-barrel protein, yjbN family [Marinomonas posidonica
IVIA-Po-181]
Length = 345
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 183/312 (58%), Gaps = 16/312 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWT + YR AR ++K+ LYTEM+ + ++ Q N RFL + +HPI LQ
Sbjct: 24 FSVAPMMDWTTSDYRVFARTLTKNTLLYTEMVTSGALL-QGNNPARFLHYDECEHPIALQ 82
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +L + +A YDE+NLN GCPS +V + G LM P V +AM +
Sbjct: 83 LGGSNAKDLGQCAAMAEKCGYDEVNLNVGCPSDRVQ-NSLIGACLMAHPDKVKDAMKAMQ 141
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+PV++K RIG+D+ Y+ + DF+ +VS+ + + FI+H+R A+L G+SP ENR I
Sbjct: 142 DSCNIPVTLKHRIGLDEQQDYSVVRDFVGEVST-TGVKTFIVHARNAILQGLSPKENREI 200
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY Y + L DFPDL +NGGI T++E A L K VM+GR AY NPW L V
Sbjct: 201 PPLKYHYVHQLKEDFPDLEIIINGGIKTIEECQAHLLK-VDGVMIGREAYHNPWL-LSQV 258
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D AIYG R Q +E + Y + L G H + + +L F EPG F+
Sbjct: 259 DQAIYGNAPVVTDRYQALEAFVPYVEEKLAQ-GERLLH---LTRHILGIFQGEPGGKQFR 314
Query: 311 R-------KADA 315
R KADA
Sbjct: 315 RYLSENGHKADA 326
>gi|357405395|ref|YP_004917319.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
gi|351718060|emb|CCE23725.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
Length = 347
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPM+DWTD H R RL+SKHA+LYTEM+ +++ G+ DRFL + P+++P+ Q
Sbjct: 32 FCVAPMLDWTDRHCRYFYRLMSKHAYLYTEMITTGALLH--GDRDRFLQYHPDENPLACQ 89
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA ++ Y Y E+NLN GCPS +V +G FG LM P+ V E +S +
Sbjct: 90 LGGSHPLELAACAKMVEDYGYHEVNLNVGCPSDRVQ-NGRFGACLMATPELVAECLSAMN 148
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCRIG+DD DSY L FI VS + R FIIH+RKA L+G+SP ENR I
Sbjct: 149 RVVSIPVTVKCRIGIDDQDSYEALHRFITLVSE-AGCRVFIIHARKAWLSGLSPKENREI 207
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y + RDFP L LNGG+ ++D+ + + VMVGR YQNP Y L V
Sbjct: 208 PPLRYDVVYRIKRDFPKLEIILNGGVRSLDQA-LVINDEVNGVMVGREVYQNP-YLLAGV 265
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y + +R ++VE Y +G + + + LL FH PG ++
Sbjct: 266 DELFYRDFHAIKSREEIVEALLTY----VGEQLKQGVRLYSIARHLLGLFHGVPGARSWR 321
Query: 311 R 311
R
Sbjct: 322 R 322
>gi|383191973|ref|YP_005202101.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590231|gb|AEX53961.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 342
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/301 (44%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++ LYTEM+ II+ +G+ +L F E+HP+ LQ
Sbjct: 19 FSVAPMLDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGD---YLGFGDEEHPVSLQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM V + + +
Sbjct: 76 LGGSNPADLAHCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGQASLVADCIKAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI +VS FIIH+RKA L+G+SP ENR I
Sbjct: 135 DVVSIPVTVKTRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E L+ VMVGR AYQNP L +V
Sbjct: 195 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKTHLQY-MDGVMVGREAYQNPGILL-NV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + T V+ Y +A LG ++ + + +L F PG F+
Sbjct: 253 DRELFGSDAPLKTGPDVIRALYPYIEAELG----KGTYLGHITRHILGLFQGVPGARQFR 308
Query: 311 R 311
R
Sbjct: 309 R 309
>gi|427725902|ref|YP_007073179.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7376]
gi|427357622|gb|AFY40345.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7376]
Length = 324
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 188/325 (57%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R L R I++ L+TEM+ II+ G+ + L F PE+HPI LQ
Sbjct: 7 LSVAPMMDRTDRHFRYLMRQITRRTLLHTEMVTTGAIIH--GDRPKLLDFDPEEHPISLQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N +LA ++ + YDEINLN GCPSP+V G FG LM P+ V ++ +
Sbjct: 65 LGGDNPADLATCAKVGEDWGYDEINLNVGCPSPRVQ-QGNFGACLMTQPEVVANCIAAMQ 123
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIGVD+ DSY LC F+ VS R F +H+RKA L G+SP ENRT+
Sbjct: 124 NAVNIPVTVKHRIGVDEQDSYEDLCRFVEIVSQTGCDR-FSVHARKAWLQGLSPKENRTV 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L ++FP+L +NGGI + ++ L + + VM+GRAAY NP Y V
Sbjct: 183 PPLRYEDVYRLKQEFPNLWIEINGGITELAQIKNHLEQ-VNAVMIGRAAYDNP-YLFATV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR ++VE Y I ++ N + + + +L F +PG +K
Sbjct: 241 DRDIYGEATEPKTRHEIVESMLPY---IERSHANG-VKLHSISRHMLSIFLGKPGTKAWK 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R + + + +E+ + +P
Sbjct: 297 RYITEEGRGFEVSREVIEQALALVP 321
>gi|336248184|ref|YP_004591894.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334734240|gb|AEG96615.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 332
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAALVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++ E L VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVWQLKRDFPHLTMAINGGIKSLAEAKQQLEH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 249 DREIFGVDGADADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|134295639|ref|YP_001119374.1| tRNA-dihydrouridine synthase A [Burkholderia vietnamiensis G4]
gi|134138796|gb|ABO54539.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia vietnamiensis
G4]
Length = 344
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 174/285 (61%), Gaps = 9/285 (3%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R +++ WLYTEM+ +++ G+ R LA
Sbjct: 1 MSAPSTLPPRRVSVAPMLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLA 58
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 59 FTPNESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 117
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + +VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L
Sbjct: 118 QLVADCVKAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAQ-AGCDTFIVHARNAIL 176
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR A
Sbjct: 177 KGLSPKENREIPPLKYDYAYRLKRDFPALEIVINGGIKTLDEVAEHLEH-VDGVMLGREA 235
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
Y NP Y L VD YG+ + TR + K Y A L GTY
Sbjct: 236 YHNP-YVLAGVDARFYGSTAPAPTREEAEAKLIEYCAAELKRGTY 279
>gi|388598475|ref|ZP_10156871.1| tRNA-dihydrouridine synthase A [Vibrio campbellii DS40M4]
Length = 326
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 190/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 DVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSERGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQY-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F S PG ++
Sbjct: 241 DQELFGSNTPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|294677314|ref|YP_003577929.1| tRNA-dihydrouridine synthase A [Rhodobacter capsulatus SB 1003]
gi|294476134|gb|ADE85522.1| tRNA-dihydrouridine synthase A [Rhodobacter capsulatus SB 1003]
Length = 346
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 175/301 (58%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R++S+ A LYTEM+ A +I+ G + L FSP +HP+ LQ
Sbjct: 28 LSVAPMLDWTDRHCRVFHRMMSRQALLYTEMVTAPAVIH--GKRAQLLDFSPVEHPVALQ 85
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+AT +A + YDEINLN GCPS +V G FG LM P V ++ +
Sbjct: 86 LGGSDPAELAEATRIARDWGYDEINLNVGCPSDRVQS-GAFGAVLMKTPDLVARCVAAMQ 144
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A V V+VKCRIGVDD L F+ VS TR FI+H+RKA L G+SP ENR I
Sbjct: 145 AAAAVEVTVKCRIGVDDQSPEEVLPAFLKTVSEAGVTR-FILHARKAWLQGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y +A+ R+FP L +LNGG+ T+D+V L G VMVGRAAYQ P L
Sbjct: 204 PPLDYPLVHAMKREFPHLHLSLNGGVATLDQVETHLAAGMDGVMVGRAAYQEPMQVLAGA 263
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++G L+ +V E + Y L G + + + +L FH PG ++
Sbjct: 264 DVALWGR-GEVLSAVEVAEAMKPYIADHLAAGGR----LHQITRHMLGLFHGRPGARGWR 318
Query: 311 R 311
R
Sbjct: 319 R 319
>gi|386616879|ref|YP_006136545.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
gi|332346048|gb|AEE59382.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
Length = 339
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|417345397|ref|ZP_12125529.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|357953004|gb|EHJ79712.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
Length = 263
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 160/247 (64%), Gaps = 6/247 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 248
Query: 251 DTAIYGA 257
D I+GA
Sbjct: 249 DREIFGA 255
>gi|375258454|ref|YP_005017624.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397655399|ref|YP_006496101.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
gi|365907932|gb|AEX03385.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394344113|gb|AFN30234.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
Length = 332
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 185/328 (56%), Gaps = 14/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYGFLCDFIETVSVKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT +NGGI +++E L AH VMVGR AYQNP L
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKQHL---AHMDGVMVGREAYQNPG-ILA 246
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD I+G VV Y + L +N ++ V + +L F PG
Sbjct: 247 SVDREIFGVEGIDADPVSVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
++R + LE+ + + D
Sbjct: 303 WRRYLSENAHKAGADINVLEQALKLVAD 330
>gi|221197852|ref|ZP_03570898.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
gi|221204590|ref|ZP_03577607.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221175447|gb|EEE07877.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221181784|gb|EEE14185.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
Length = 357
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 185/314 (58%), Gaps = 15/314 (4%)
Query: 1 MVARQYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA 59
M A LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LA
Sbjct: 14 MSASSSLPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLA 71
Query: 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP 119
F+P + P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P
Sbjct: 72 FTPNESPVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEP 130
Query: 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL 179
+ V + + + VPV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L
Sbjct: 131 QLVADCVKAMRDAVAVPVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCST-FIVHARNAIL 189
Query: 180 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239
G+SP ENR IPPLKY+Y Y L DFP L +NGGI T+DEV L VM+GR A
Sbjct: 190 KGLSPKENREIPPLKYDYAYRLKHDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREA 248
Query: 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLL 297
Y NP Y L VD YG+ + TR + + Y A L GTY + +++ L
Sbjct: 249 YHNP-YVLADVDARFYGSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHAL 301
Query: 298 HFFHSEPGNGLFKR 311
+ PG ++R
Sbjct: 302 GLYRGVPGARGWRR 315
>gi|402845185|ref|ZP_10893528.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
gi|402271761|gb|EJU20998.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
Length = 332
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 185/328 (56%), Gaps = 14/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT +NGGI +++E L AH VMVGR AYQNP L
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKQHL---AHMDGVMVGREAYQNPG-ILA 246
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD I+G VV Y + L +N ++ V + +L F PG
Sbjct: 247 SVDREIFGVEGIDADPVSVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
++R + LE+ + + D
Sbjct: 303 WRRYLSENAHKAGADINVLEQALKLVAD 330
>gi|444353700|ref|YP_007389844.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
gi|443904530|emb|CCG32304.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
Length = 354
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 37 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 93
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 94 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAALVADCIKAMR 152
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 153 DVVSIPVTVKTRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREI 212
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L RDFP LT +NGGI ++ E L VMVGR AYQNP L V
Sbjct: 213 PPLDYPRVWQLKRDFPHLTMAINGGIKSLAEAKQQLEH-MDGVMVGREAYQNPG-ILASV 270
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 271 DREIFGVDGADADPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 326
Query: 311 R 311
R
Sbjct: 327 R 327
>gi|261250374|ref|ZP_05942949.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953731|ref|ZP_12596774.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938943|gb|EEX94930.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816847|gb|EGU51740.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 333
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL++ LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGD---FLAYNQEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 71 LGGSNPKDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPQLVADCVAAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 130 DVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF L +NGG+ T+ E L+ VMVGR AYQNP Y L V
Sbjct: 190 PPLDYPRAYQLKKDFSHLAIAVNGGVKTLAETKEHLQH-LDGVMVGREAYQNP-YILAEV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G R QVVE+ Y + L +N ++ + + +L F + PG ++
Sbjct: 248 DQQIFGLDKPVKKRTQVVEEMYPYIEQQL----SNGAYLGHITRHMLGLFQNMPGARQWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|419177772|ref|ZP_13721572.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
gi|378027302|gb|EHV89932.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
Length = 345
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+FI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGSSDIDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|254796068|ref|YP_003080905.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|254595468|gb|ACT74829.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
Length = 330
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 8 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDF LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 184 ENREIPPLDYPRVYQLKRDFLHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 241
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 295
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 296 PGARQWRR 303
>gi|392977169|ref|YP_006475757.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323102|gb|AFM58055.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 331
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 180/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECGMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT ++NGGI ++DE L AH VMVGR AYQNP L
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKTHL---AHMDGVMVGREAYQNPG-ILA 245
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD I+G + VV Y + L +N ++ + + +L F PG
Sbjct: 246 TVDREIFGVEGADSDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|350529472|ref|ZP_08908413.1| tRNA-dihydrouridine synthase A [Vibrio rotiferianus DAT722]
Length = 326
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 SVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSTAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHISRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|254482016|ref|ZP_05095258.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
gi|214037706|gb|EEB78371.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
Length = 315
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/300 (43%), Positives = 182/300 (60%), Gaps = 18/300 (6%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDW+D+H R RL+SK A LYTEM+ +I+ G+ +RFL F+ E+HP+ LQ+GGSN
Sbjct: 1 MMDWSDHHCRYFWRLLSKQALLYTEMVTTGALIH--GDRERFLRFNAEEHPVALQLGGSN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LA+ A ++YDE+NLNCGCPS +V G FG LM P+ V + + + T +
Sbjct: 59 PNDLAQCARWAQEWHYDEVNLNCGCPSDRVQS-GMFGACLMAQPELVADGVKAMRDATLL 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY Q+ DF+ V+ + FI+H+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKHRIGIDDMDSYEQMLDFVGPVAD-AGCEVFIVHARKAWLKGLSPKENREIPPLVY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTA 253
++ Y L RD PDL +NGGI T+++ L AH VM+GR AYQNPW L VD+
Sbjct: 177 DWVYRLKRDLPDLEIVINGGIQTIEDCEDHL---AHVDGVMIGREAYQNPW-MLAEVDSR 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDA--ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
++G +R V+ Y + LGT H+ + + +L + PG F+R
Sbjct: 233 LFGIDKVAESRDDVLLGLLPYVEQQLALGT------HLNHITRHILGLYQGVPGARKFRR 286
>gi|375132152|ref|YP_004994253.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
gi|315181327|gb|ADT88241.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
Length = 319
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 189/330 (57%), Gaps = 14/330 (4%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ+G
Sbjct: 1 MAPMLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLG 57
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GSN +LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + A
Sbjct: 58 GSNPVDLARCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKAV 116
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
++PV+VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP ENR IPP
Sbjct: 117 VDIPVTVKTRIGIDDQDSYEFLTHFVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y Y L +DFP LT +NGG+ ++ E L+ VM+GR AYQ+P Y L VD
Sbjct: 177 LDYPRAYQLKQDFPQLTIAVNGGVKSLAEAKEHLQH-LDGVMIGREAYQSP-YLLAEVDQ 234
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
I+G + R QVV++ Y + L G+Y + + + +L F + PG ++
Sbjct: 235 QIFGLDTPVKKRSQVVQEMYPYIEQQLAQGSY------LGHITRHMLGLFQNMPGARQWR 288
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLD 340
R +E+ + IP LD
Sbjct: 289 RHISENAHKAGAGIEVVEQALAKIPYQELD 318
>gi|168748106|ref|ZP_02773128.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755216|ref|ZP_02780223.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168766306|ref|ZP_02791313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168774404|ref|ZP_02799411.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780459|ref|ZP_02805466.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|195935832|ref|ZP_03081214.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807897|ref|ZP_03250234.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208814168|ref|ZP_03255497.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821033|ref|ZP_03261353.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209398005|ref|YP_002273589.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|419089390|ref|ZP_13634734.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|424118684|ref|ZP_17852494.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|424168129|ref|ZP_17887061.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|424259338|ref|ZP_17892600.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|424503340|ref|ZP_17950199.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|424509611|ref|ZP_17955952.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|424541244|ref|ZP_17984164.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|424547395|ref|ZP_17989696.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|424553593|ref|ZP_17995394.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|424572241|ref|ZP_18012750.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|424578400|ref|ZP_18018408.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|425141260|ref|ZP_18541617.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|425153050|ref|ZP_18552640.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|425332693|ref|ZP_18720480.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|425338873|ref|ZP_18726186.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|425345164|ref|ZP_18732028.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|425351002|ref|ZP_18737437.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|425357271|ref|ZP_18743309.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|425363226|ref|ZP_18748849.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|425369490|ref|ZP_18754541.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|429075959|ref|ZP_19139194.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444949988|ref|ZP_21268264.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444955588|ref|ZP_21273636.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444993687|ref|ZP_21310312.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|445010034|ref|ZP_21326245.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|445042795|ref|ZP_21358149.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
gi|452968715|ref|ZP_21966942.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|187769933|gb|EDU33777.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017450|gb|EDU55572.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001854|gb|EDU70840.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357455|gb|EDU75874.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189364132|gb|EDU82551.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|208727698|gb|EDZ77299.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208735445|gb|EDZ84132.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741156|gb|EDZ88838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209159405|gb|ACI36838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|377925314|gb|EHU89254.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|390673506|gb|EIN49747.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|390716238|gb|EIN89050.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|390717483|gb|EIN90268.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|390821894|gb|EIO88056.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|390827023|gb|EIO92814.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|390862031|gb|EIP24244.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|390865927|gb|EIP27919.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|390874494|gb|EIP35613.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|390890823|gb|EIP50476.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|390914088|gb|EIP72634.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|408242514|gb|EKI65094.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|408251313|gb|EKI73059.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|408255561|gb|EKI76996.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|408262137|gb|EKI83087.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|408270671|gb|EKI90852.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|408273472|gb|EKI93526.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|408281759|gb|EKJ01143.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|408575226|gb|EKK50910.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|408592775|gb|EKK67131.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|427324246|gb|EKW85725.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444553974|gb|ELV31563.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444558675|gb|ELV35946.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444602347|gb|ELV77089.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|444618090|gb|ELV92189.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|444650477|gb|ELW23305.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
Length = 345
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 183/308 (59%), Gaps = 14/308 (4%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 23 YWNSRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 80 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 139 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDF LT ++NGGI +++E A L+ VMVGR AYQNP
Sbjct: 199 ENREIPPLDYPRVYQLKRDFLHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG- 256
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD I+G+ + VV Y + L GTY + + + +L F
Sbjct: 257 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|300023380|ref|YP_003755991.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525201|gb|ADJ23670.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
Length = 335
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 181/324 (55%), Gaps = 10/324 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APMMDWTD H R R ++ A LYTEM+ A+ +I+ G+ R L +S +HPI LQ
Sbjct: 8 FSIAPMMDWTDRHCRVFHRQLTTRALLYTEMVTADAVIH--GDRARLLGYSEVEHPIALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + YDEINLN GCPS +V G FG LM +P+ V ++ +
Sbjct: 66 LGGSDPAKLAEAARIGAELGYDEINLNVGCPSDRVQ-EGRFGACLMSEPELVAACVAAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A+ VPV+VKCRIG+DD D+ L FI V+ TR F++H+RKA L G+SP ENR +
Sbjct: 125 AHQPVPVTVKCRIGIDDQDAEEDLRRFIDVVADAGCTR-FVVHARKAWLKGLSPKENREV 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L PDL +NGGI T++E A L VM+GRAAYQNP L V
Sbjct: 184 PPLDYERVYRLKAARPDLEIVINGGIETIEEARAHL-DHVDGVMLGRAAYQNP-AILADV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ A + TR +E Y + L G + +V + +L +H +P F+
Sbjct: 242 DRLIFDADTESPTRAAALEAMLPYIEQHLKRGGR----LSNVTRHVLGLYHGQPRGKTFR 297
Query: 311 RKADAAFQTCKTVKSFLEETIVAI 334
R + L E I +
Sbjct: 298 RHLSEGATSADATADVLREAIAIV 321
>gi|146291866|ref|YP_001182290.1| tRNA-dihydrouridine synthase A [Shewanella putrefaciens CN-32]
gi|145563556|gb|ABP74491.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens CN-32]
Length = 343
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 184/301 (61%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 25 FSIAPMLDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+NLN GCPS +V +G FG LM +P V E + +
Sbjct: 82 LGGSNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVDAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V++ T F IH+RKA L G+SP ENR I
Sbjct: 141 QVVDIPVTVKTRIGIDEQDSYEFLTYFIDIVNAKGCT-DFTIHARKAWLQGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P L ++NGG+ T+++ L + VM+GR AYQNP Y L V
Sbjct: 200 PPLDYERVYQLKRDYPVLNISINGGVTTLEQAQGHLAQ-LDGVMMGREAYQNP-YILARV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 258 DQVLCGSQRAVISREDVIEAMLPYIEAHLQAGG----RLNHITRHMIGLFQGLPGARAWR 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|451977713|ref|ZP_21927782.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
gi|451929428|gb|EMD77176.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
Length = 315
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNKEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LAK +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ + ++
Sbjct: 58 PEDLAKCAKLAQERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVSDCVAAMKDVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DDHDSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F S PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|424904267|ref|ZP_18327777.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
gi|390930245|gb|EIP87647.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 323
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/269 (47%), Positives = 168/269 (62%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + ++
Sbjct: 59 PADLAHAAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD D Y + DF+ V++ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDSVDDYAFVRDFVGTVAA-AGCEVFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGG+ T+DEV LR VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPQLEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
GA + TR V K Y L GTY
Sbjct: 235 GATAPAPTREAVEAKLVEYCATELARGTY 263
>gi|237728132|ref|ZP_04558613.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
gi|226910143|gb|EEH96061.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
Length = 331
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 248 DREIFAATTEDTDPVAVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|416519302|ref|ZP_11739838.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363558367|gb|EHL42559.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
Length = 316
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 185/325 (56%), Gaps = 10/325 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ+G
Sbjct: 1 IAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLG 57
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 58 GSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDV 116
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPP
Sbjct: 117 VSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L VD
Sbjct: 177 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDR 234
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
I+GA ++ VV Y + L + ++ + + +L F PG ++R
Sbjct: 235 EIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWRRY 290
Query: 313 ADAAFQTCKTVKSFLEETIVAIPDS 337
+ LE+ + + D
Sbjct: 291 LSENAHKAGADVAVLEQALKLVADK 315
>gi|119476488|ref|ZP_01616839.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
gi|119450352|gb|EAW31587.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
Length = 341
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 196/326 (60%), Gaps = 17/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APMM W+D H R R +++HA +YTEM+ I++ DRFL ++ +HP+ LQ
Sbjct: 8 FSIAPMMAWSDRHCRMFWRQLTQHAVMYTEMVTTGAILH--AGADRFLTYNTGEHPLALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D+LA T++A + YDE+NLNCGCPS +V +G FG LM P+ V + +S +
Sbjct: 66 LGGSNPDDLASCTKIAADFGYDEVNLNCGCPSDRVQ-NGMFGACLMAHPQRVADCISAMQ 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+++P++VK RIG+D+ +SY+++ +F+ ++ + FI+H+RKA L G+SP +NR I
Sbjct: 125 DASSLPITVKHRIGIDEMESYDEMLEFVKPIADTGCST-FIVHARKAWLQGLSPKQNRDI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + L +DFP L +NGGI +++ + L+ VM+GRAAYQNP Y L V
Sbjct: 184 PPLHYDMVHQLKQDFPSLNVIINGGITSIEHCVSHLQL-VDGVMLGRAAYQNP-YLLAEV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ IY AP+ TR QV+ Y Y + L N + + + +L F PG LF+
Sbjct: 242 DSLIYNAPTVIKTRDQVLLDYIPYIEEQL----QNNVALNHMTRHILGLFQGIPGAKLFR 297
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R ++DA + + E
Sbjct: 298 RHISEQAHRSDAGINVVYQARELMLE 323
>gi|409201210|ref|ZP_11229413.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas flavipulchra JG1]
Length = 337
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 191/329 (58%), Gaps = 22/329 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KHA LYTEM+ II+ +G+ +LAF + P+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGD---YLAFGAHELPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ + A Y Y E+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 79 LGGSDPKALAECAKRAEQYGYSEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A N+PV+VK RIG+D+ DSY L I + S FIIH+RKA L G+SP ENR I
Sbjct: 138 AEVNIPVTVKTRIGIDEQDSYEFLTALI-EASQAVGCDDFIIHARKAWLQGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y Y L +D+PDL ++NGG+ T++E L AH VMVGR AY NP + L
Sbjct: 197 PPLDYPRVYQLKKDYPDLHISINGGVKTLEECQHHL---AHLDGVMVGREAYSNP-FMLS 252
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +YG + TR QVV Y ++ + G N H + + +L F ++PG
Sbjct: 253 QVDELLYGEAAFTQTRHQVVRSMYGYFESEMSN-GANFWH---IARHMLGIFQNQPGARG 308
Query: 309 FKR-------KADAAFQTCKTVKSFLEET 330
F+R K +A + + SF+ E
Sbjct: 309 FRRHLSENGHKKEAGIEVMEKALSFVPEV 337
>gi|390950169|ref|YP_006413928.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
gi|390426738|gb|AFL73803.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
Length = 336
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 10/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+VAPM+DWTD H+R RLI++H+ LYTEM+ +++ G+ +RFL F P +HP+ LQ
Sbjct: 17 IAVAPMLDWTDRHFRFFLRLITRHSLLYTEMVTTGALLH--GDRERFLRFDPAEHPVALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +A+ L + YDEIN+N GCPS +V +G FG LM +P V + ++ +
Sbjct: 75 LGGSDPVEMARCARLGANWGYDEININVGCPSDRVQ-NGRFGACLMAEPGLVADCVAAMK 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
VPV+VK RIG+DD DSY +L DF+ + + I+H+RKA L G+SP ENR +
Sbjct: 134 DAVTVPVTVKTRIGIDDRDSYGELVDFV-GTQAAAGCDALIVHARKAWLKGLSPKENRDV 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L DFPDLT ++NGGI T+ E A VM+GR AY NPW L
Sbjct: 193 PPLRYEVVQQLKTDFPDLTISINGGIKTLIEA-ADFLTTLDGVMIGREAYHNPWM-LAQA 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G LTR +V++++ Y L P + + + LL F +PG ++
Sbjct: 251 DRVVFGDDHPPLTRHEVLDRFLPYAQRELAA---GVP-LSAMSRHLLGLFQGQPGGRAWR 306
Query: 311 RK 312
R+
Sbjct: 307 RR 308
>gi|399154285|ref|ZP_10754352.1| tRNA-dihydrouridine synthase A [gamma proteobacterium SCGC
AAA007-O20]
Length = 317
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 182/304 (59%), Gaps = 10/304 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R RL+S LYTEM+ ++ I+ +G+ +R L ++ +HP+
Sbjct: 3 PYTVSVAPMMDWTDKHCRYFFRLLSTCTQLYTEMITSKAIL--RGDKNRLLDYNSMEHPL 60
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
+LQ+GGS+ +A+ +++A + YDE+N+N GCPS +V G FG LM +P V +
Sbjct: 61 ILQLGGSDQKEMAQCSQIAKQWGYDEVNINVGCPSDRVLS-GSFGACLMKEPDLVASCVE 119
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +++PVSVK RIG+DD ++Y+QL DF+ ++ +HFIIH+RKA L G+SP EN
Sbjct: 120 SMIDASDIPVSVKSRIGIDDMETYDQLSDFVSRIHE-KGCQHFIIHARKAWLQGLSPKEN 178
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
RTIPPL Y + Y L +DFP L TLNGGI +EV L VM+GRA Y P Y L
Sbjct: 179 RTIPPLNYPWVYQLKKDFPQLKITLNGGITECNEVVEHLGH-VDGVMLGRAIYHQP-YLL 236
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
+D+ ++G TR QV+ Y Y I P +R + + +L +H +
Sbjct: 237 ADIDSRVFGKKGISRTRDQVLIDYMSY---IKQQLKEGVP-IRAMTRHILGLYHGQNNAN 292
Query: 308 LFKR 311
F+R
Sbjct: 293 FFRR 296
>gi|424818607|ref|ZP_18243758.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
gi|325499627|gb|EGC97486.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
Length = 331
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 181/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNMLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYSRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ + + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFASTDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|387121479|ref|YP_006287362.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756685|ref|ZP_11481125.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036249|ref|ZP_11573666.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049171|ref|ZP_11576490.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991987|gb|EGY33425.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996565|gb|EGY37630.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655707|gb|EGY71147.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875971|gb|AFI87530.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 327
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM++WT H R R S+HA LYTEM+ + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYEQVYQLKRDFPHLLISINGGIKTIDEMQQHLQL-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ A + +T R+ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFNANAPIVTPREAVEKMLPYIEQQLSRGVYLNH------IVRHILSAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R KA A + +T F+E
Sbjct: 300 WRRYLSENAYKAGAGIEVVETALGFVE 326
>gi|365101882|ref|ZP_09332486.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
gi|363646657|gb|EHL85894.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
Length = 332
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 249 DREIFSAATEDTDPVAVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|127511470|ref|YP_001092667.1| tRNA-dihydrouridine synthase A [Shewanella loihica PV-4]
gi|126636765|gb|ABO22408.1| TIM-barrel protein, yjbN family [Shewanella loihica PV-4]
Length = 329
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 187/301 (62%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S LYTEM+ II+ +G+ +LA++ E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHYRYFARLMSSELLLYTEMVTTGAIIHGKGD---YLAYNQEEHPLALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDE+NLN GCPS +V +G FG LM +P V + ++ +
Sbjct: 71 LGGSNPEDLAKCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPDLVAQCVAAMN 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L +F+ KVS+ + FIIH+RKA L G+SP ENR I
Sbjct: 130 EVVDIPVTVKTRIGIDEQDSYEFLTEFVDKVSA-AGCDTFIIHARKAWLQGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y+ Y L +D+P L+ ++NGG+ T++E L++ VMVGR AYQNP Y L V
Sbjct: 189 PELDYDRVYRLKQDYPQLSISINGGVKTLEECGEHLKQ-LDGVMVGREAYQNP-YLLAQV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G L+R V+E Y + L + G + + + + + E G+ ++
Sbjct: 247 DQQLCGLDKPVLSRDAVLENMIPYIEKHLVSGG----RLNHITRHMTGLYQGEAGSRAWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>gi|429101989|ref|ZP_19163963.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
gi|426288638|emb|CCJ90076.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
Length = 331
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 180/305 (59%), Gaps = 18/305 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSDEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT ++NGGI T+D+V A L AH VMVGR AYQNP L
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKAHL---AHMDGVMVGREAYQNPGL-LA 245
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
VD I+G + VV Y G+ GTY + V + +L F PG
Sbjct: 246 SVDREIFGLDTPDADPVAVVRAMYPYIEGELAKGTY------LGHVTRHMLGLFQGIPGA 299
Query: 307 GLFKR 311
++R
Sbjct: 300 RQWRR 304
>gi|416056193|ref|ZP_11579807.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416068298|ref|ZP_11582733.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444333553|ref|ZP_21149328.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348001196|gb|EGY41950.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002217|gb|EGY42923.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551562|gb|ELT59375.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 327
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM++WT H R R S+HA LYTEM+ + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQL-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ A + +T R+ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFNANAPIVTPREAVEKMLPYIEQQLSRGVYLNH------IVRHILSAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R KA A + +T F+E
Sbjct: 300 WRRYLSENAYKAGAGIEVVETALGFVE 326
>gi|296100676|ref|YP_003610822.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055135|gb|ADF59873.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 331
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 185/329 (56%), Gaps = 14/329 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPL Y Y L RDFP LT ++NGGI ++DE L AH VMVGR AYQNP L
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKTHL---AHMDGVMVGREAYQNPG-ILT 245
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD I+G + VV Y + L +N ++ + + +L F PG
Sbjct: 246 TVDREIFGVEGADTDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQ 301
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R LE+ + + D
Sbjct: 302 WRRYLSENAHKAGADIEVLEQALRLVADK 330
>gi|323492300|ref|ZP_08097456.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
gi|323313464|gb|EGA66572.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
Length = 333
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y FS+APM+DWTD H R RL++ LYTEM+ II+ +G+ FLA++ E+
Sbjct: 8 KYAANRFSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGD---FLAYNQEE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V +
Sbjct: 65 HPVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPQLVAD 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + ++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP
Sbjct: 124 CVAAMRDVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y Y L +DF L +NGG+ T+ E L+ VMVGR AYQNP
Sbjct: 184 KENREIPPLDYPRAYQLKKDFSHLVIAVNGGVKTLQETKEHLQH-LDGVMVGREAYQNP- 241
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L VD I+G + R QVVE+ Y + L + ++ + + +L F + P
Sbjct: 242 YILAEVDQQIFGLDTPIKKRSQVVEEMYPYIEQQL----SKGAYLGHITRHMLGLFQNMP 297
Query: 305 GNGLFKR 311
G ++R
Sbjct: 298 GARQWRR 304
>gi|399017469|ref|ZP_10719661.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
gi|398103343|gb|EJL93514.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
Length = 322
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 180/299 (60%), Gaps = 10/299 (3%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R R I++H WLYTEM+ ++Y G++ R L F+ E+HP+ LQ+GGS
Sbjct: 1 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLY--GDVGRHLNFNEEEHPVALQLGGSEP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
+LAK+ +L + YDEINLNCGCPS +V G FG LM +P V + + + ++
Sbjct: 59 VDLAKSAKLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMAEPTLVADCVKAMRDAVSID 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIG+DD +SY+ + DF+ K++ + ++ FI+H+R A+L G+SP ENR IPPLKY+
Sbjct: 118 VTVKHRIGIDDVESYDFVRDFVGKIAE-AGSKTFIVHARNAVLKGLSPKENREIPPLKYD 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y Y L RDFP+L +NGGI TV E++ L K VM+GR AY NP+ G D Y
Sbjct: 177 YAYRLKRDFPELEILINGGIKTVAEIDEHL-KHVDGVMLGREAYHNPFLMAG-FDARYYA 234
Query: 257 APSSGL--TRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 311
G+ R +V+E Y A L +G+ +R + + +L PG F++
Sbjct: 235 ELDGGVQANRSEVIEAMMAYASAQLALHGDGGKGLRLNSITRHMLGLMAGMPGARAFRQ 293
>gi|24375400|ref|NP_719443.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
gi|38604868|sp|Q8EAJ0.1|DUSA_SHEON RecName: Full=tRNA-dihydrouridine synthase A
gi|24350234|gb|AAN56887.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
Length = 335
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 18/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R K A + K ++ +VA
Sbjct: 305 RYLSENAHKNGAGIEVVKLAYQSVQTDLVA 334
>gi|424041341|ref|ZP_17779297.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
gi|408890835|gb|EKM28832.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
Length = 326
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 190/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPTDLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 DVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMFPYIEAQLA----KGAYLGHISRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>gi|455644996|gb|EMF24086.1| tRNA-dihydrouridine synthase A [Citrobacter freundii GTC 09479]
Length = 332
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 249 DREIFAAATEDADPVAVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|107022641|ref|YP_620968.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia AU 1054]
gi|116689590|ref|YP_835213.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia HI2424]
gi|105892830|gb|ABF75995.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia AU
1054]
gi|116647679|gb|ABK08320.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia
HI2424]
Length = 365
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 184/308 (59%), Gaps = 15/308 (4%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P +
Sbjct: 28 LPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSES 85
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 86 PVALQLGGSERDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADC 144
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + +VPV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP
Sbjct: 145 VRAMRDAVSVPVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPK 203
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y
Sbjct: 204 ENREIPPLKYDYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-Y 261
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSE 303
L VD YG+ ++ R + + Y A L GTY + +++ L +
Sbjct: 262 VLAEVDARFYGSTAAVPMREEAEAQLIEYCAAELKRGTY------LGAIVRHALGLYRGM 315
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 316 PGARGWRR 323
>gi|395231244|ref|ZP_10409536.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|424731198|ref|ZP_18159785.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
gi|394715022|gb|EJF20892.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|422894384|gb|EKU34197.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
Length = 332
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 249 DREIFAATTEDTDPVTVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|237809463|ref|YP_002893903.1| yjbN family TIM-barrel protein [Tolumonas auensis DSM 9187]
gi|237501724|gb|ACQ94317.1| TIM-barrel protein, yjbN family [Tolumonas auensis DSM 9187]
Length = 338
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL++K+ LYTEM+ I++ +G+ +L +S E+HPI LQ
Sbjct: 19 FSIAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAILFGKGD---YLQYSTEEHPIALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAK +A YDEINLN GCPS +V +G FG LM + V + ++ +
Sbjct: 76 LGGSDPVDLAKCARIAEDRGYDEINLNVGCPSDRVQ-NGRFGACLMASAQLVADCVAAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VK RIG+D+ DSY LCDFI V + FI+H+RKA L+G+SP ENR I
Sbjct: 135 AEVQIPVTVKTRIGIDELDSYAFLCDFIETVQQ-TGCNTFIVHARKAWLSGLSPKENRDI 193
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RD+P LT +NGGI + + L+ VMVGR AYQNP Y L V
Sbjct: 194 PPLDYERVYQLKRDYPHLTIAINGGITDLAQAKHHLQY-VDGVMVGREAYQNP-YMLAQV 251
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ P L+R + V + Y DA L G ++ + + +L F PG ++
Sbjct: 252 DAQLFADPHPVLSRHETVMQMLPYIDAHLQAGG----YLSHITRHMLGLFQGVPGARAWR 307
Query: 311 R 311
R
Sbjct: 308 R 308
>gi|292489772|ref|YP_003532662.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|292898020|ref|YP_003537389.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|428786747|ref|ZP_19004225.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
gi|291197868|emb|CBJ44967.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|291555209|emb|CBA23447.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|426275016|gb|EKV52756.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
Length = 349
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 190/340 (55%), Gaps = 21/340 (6%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y P FSVAPM+DWTD H R R +++ LYTEM+ II+ +G+ +LAFS
Sbjct: 20 APKYSPSRFSVAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGD---YLAFSS 76
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA+ +LA Y EINLN GCPS +V +G FG LM + + V
Sbjct: 77 EEHPVALQLGGSDPAALAQCAKLAERRGYQEINLNVGCPSDRVQ-NGRFGACLMGEAQLV 135
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + +VPV+VK RIG+DD DSY LCDF+ VS FIIH+RKA L+G+
Sbjct: 136 ADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGL 195
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP LT ++NGG+ ++ E L+ VM+GR AYQN
Sbjct: 196 SPKENREVPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQH-LDGVMMGREAYQN 254
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFF 300
P L VD ++G S + VV Y + L GTY + V + +L F
Sbjct: 255 PGL-LAQVDRELFGCTSPSIDPIAVVRSMYPYIERELAGGTY------LGHVTRHMLGLF 307
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEETIVA 333
PG ++R KA A + S + E + A
Sbjct: 308 QGIPGARQWRRYLSENAHKAGAGIDVVEKALSMVAEKVPA 347
>gi|421847475|ref|ZP_16280612.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771129|gb|EKS54842.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 332
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYDRVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ A + VV Y + L GTY + V + +L F PG
Sbjct: 249 DREIFAAATEDADPVAVVRAMYPYIERELSKGTY------LGHVTRHMLGLFQGIPGARQ 302
Query: 309 FKR 311
++R
Sbjct: 303 WRR 305
>gi|260221113|emb|CBA29353.1| tRNA-dihydrouridine synthase A [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 370
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 178/301 (59%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+HA LYTEM+ +I+ G++ R L F+ E+HP+ LQ
Sbjct: 48 LSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALIH--GDVPRHLRFNVEEHPVALQ 105
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA+A +L + YDEIN+NCGCPS +V G FG LM + V + + +
Sbjct: 106 LGGSEPADLARAAKLGQDWGYDEININCGCPSERVQ-RGAFGACLMNEAPLVADCVKSMV 164
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D +SY+ + DF+ V+ + FI H+R A L G+SP ENR I
Sbjct: 165 DAVDVPVTVKHRIGIDKEESYSFVRDFVGTVAD-AGCNVFIAHARNAWLKGLSPKENREI 223
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP LT +NGGI EV L + VM+GR AY NPW+ L
Sbjct: 224 PPLRYELVYQLKKDFPHLTIAINGGITQTAEVAGHL-EHVDGVMLGREAYHNPWW-LAEW 281
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+A YGAP +TR V + Y + +G H + + +L H PG ++
Sbjct: 282 DSAFYGAPDRDITREMVEAQMVAYMEREAAQHGT---HWYSIARHMLGLRHGLPGARRWR 338
Query: 311 R 311
+
Sbjct: 339 Q 339
>gi|269961484|ref|ZP_06175848.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
gi|269833861|gb|EEZ87956.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
Length = 369
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 190/328 (57%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 50 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 106
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 107 LGGSNAADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 165
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 166 DVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 225
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 226 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKDHLQH-LDGVMIGREAYQSP-YLLASV 283
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 284 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHISRHMLGLFQNMPGARQWR 339
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 340 RHISENAHKPGSGLEVLQDALAKIPKEL 367
>gi|32489914|emb|CAE05107.1| OSJNBa0009K15.27 [Oryza sativa Japonica Group]
gi|39546255|emb|CAD39832.3| OSJNBa0079F16.3 [Oryza sativa Japonica Group]
Length = 481
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 141/175 (80%)
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L YEYY+ALLRDFPD+ FTLNGGI T+D+V A++R+GAH VMVGRAAY NPW LGHVD+
Sbjct: 291 LGYEYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDS 350
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
+YG P+ +RRQ++E YQ+YGD+I+G YG +RP+VR ++KPLL+ FHSEPGNGL+KRK
Sbjct: 351 EVYGMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRK 410
Query: 313 ADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKA 367
AD+ + CKT++SFLEET+ AIP+SVLD+PI + E FAD+ LLPP Y +
Sbjct: 411 ADSTLRHCKTLESFLEETLDAIPNSVLDAPIGKEAYIEEGHFADMDSLLPPRYSS 465
>gi|170077369|ref|YP_001734007.1| dihydrouridine synthase A [Synechococcus sp. PCC 7002]
gi|169885038|gb|ACA98751.1| Dihydrouridine synthase A [Synechococcus sp. PCC 7002]
Length = 344
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 186/330 (56%), Gaps = 10/330 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMD TD H+R L R I++ LYTEM+ + II+ G+ + L F +HPI
Sbjct: 11 PHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIH--GDRPKLLDFDAAEHPI 68
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GG N LA+ ++ + YDEINLN GCPSP+V G FG LM P+ V + ++
Sbjct: 69 SLQLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQ-QGNFGACLMTQPELVADCVA 127
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ N+PV+VK RIGVD+ DSY LC FI VS+ R F +H+RKA L G+SP EN
Sbjct: 128 AMQGAVNIPVTVKHRIGVDEQDSYADLCRFIEIVSATGCDR-FSVHARKAWLQGLSPKEN 186
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
RT+PPL+Y Y L +DFP L +NGGI T++ + L + VMVGRAAY NP Y
Sbjct: 187 RTVPPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHLTQ-VDAVMVGRAAYDNP-YLF 244
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD IYG +R ++VE+ Y + T + H + + +L F +PG
Sbjct: 245 ATVDRDIYGEAIQPKSRHEIVEEMLPYIER--ATKAGVKLH--SISRHMLSLFLGQPGTK 300
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
+KR + + +E+ + + +
Sbjct: 301 AWKRFITEEGRGTTVGREIIEQALALVSQT 330
>gi|218551359|ref|YP_002385151.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|218358901|emb|CAQ91560.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
Length = 331
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 181/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+ + + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFASTDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|398349670|ref|ZP_10534373.1| tRNA-dihydrouridine synthase A [Leptospira broomii str. 5399]
Length = 341
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 194/335 (57%), Gaps = 13/335 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H+R RLISK LYTEM+ I+ +G+ R L+F P+++P+ LQ
Sbjct: 13 ISVAPMMDWTDRHFRFFLRLISKKTLLYTEMVTTGAIL--RGDTRRHLSFHPQENPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+++ + Y Y EINLN GCPS KV G FG LM DPK V + ++ +
Sbjct: 71 LGGDDPLKLAESSRIGEEYGYSEINLNVGCPSDKVQ-EGNFGACLMGDPKRVSDCIAAMN 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VKCRIG+ D L +F+ VS TR IH+R A+L G+SPA+NRT+
Sbjct: 130 SAVRLPVTVKCRIGIPGKDRIEDLLEFVRTVSEAGATR-ITIHARIAILEGLSPAQNRTV 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y + R+FP+L LNGG+ T+D + L K VM+GRAAY+NP + V
Sbjct: 189 PPLRYDDVYEVKRNFPNLKLELNGGVRTLDIASEHLTK-VDGVMIGRAAYENP-FLFSTV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G TRR++ + Q Y T +P +++ LL FH G+ +++
Sbjct: 247 DQRFFGERKIRSTRREIFHQMQEYIQK--RTEEGEKPS--RILRHLLGAFHEVRGSRIYR 302
Query: 311 R-KADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 344
R + Q T + L + + +IP LD ++
Sbjct: 303 RILTEGMHQNPPT--TLLRDALASIPSEFLDQKLD 335
>gi|416802331|ref|ZP_11886116.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320649492|gb|EFX18016.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
Length = 339
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 182/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+D TD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDRTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 256 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 309
Query: 309 FKR 311
++R
Sbjct: 310 WRR 312
>gi|423118069|ref|ZP_17105753.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376402402|gb|EHT14996.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 332
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKLHLQH-MDGVMVGREAYQNPG-ILTAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ + VV Y + L +N ++ + + +L F PG ++
Sbjct: 249 DREIFAVDGADSDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|422349688|ref|ZP_16430577.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657897|gb|EKB30777.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 328
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 166/264 (62%), Gaps = 6/264 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWTD H R RL++ A LYTEM+ II+ G+ DR L FS +HP+ LQ
Sbjct: 10 FTVAPMLDWTDRHCRYFHRLLTSRARLYTEMVTTGAIIH--GDRDRLLGFSQPEHPVALQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA++ +A+AY YDE NLNCGCPS +V G FG LML+P+ V + +
Sbjct: 68 LGGSDPADLAESVRIASAYGYDEYNLNCGCPSERVQ-KGSFGACLMLEPQTVAACVRAMQ 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T+ PV+VK RIGVDDH+ Y + DF+ V + R FI+H+R A L G+SP ENR +
Sbjct: 127 DVTDKPVTVKHRIGVDDHNEYGFVRDFVGTVYD-AGCRVFIVHTRSAWLKGLSPKENREV 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL E + L +DFPD +NG I ++DE A + G VMVGRAAYQNPW G V
Sbjct: 186 PPLVRETAFRLKKDFPDTVMLINGQIASLDEAKALVDAGMDGVMVGRAAYQNPWMLAG-V 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D +YG +TR + V + Y
Sbjct: 245 DEVLYGVEHD-VTRLECVHRMTAY 267
>gi|161505294|ref|YP_001572406.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866641|gb|ABX23264.1| hypothetical protein SARI_03435 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 345
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 184/328 (56%), Gaps = 14/328 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPAQLTHCAKLAEVRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 144 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L ++NGGI +++E LR VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPHLNMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+GA ++ VV Y + L GTY + + + +L F PG
Sbjct: 262 DREIFGADTTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 315
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPD 336
++R LE+ + + D
Sbjct: 316 WRRYLSENAHKAGADIGVLEQALKLVAD 343
>gi|428299821|ref|YP_007138127.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
gi|428236365|gb|AFZ02155.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
Length = 340
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 180/307 (58%), Gaps = 12/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
QY P SVAPMMD TD H+R R I++H LYTEM+ II+ G+ + L FSPE+
Sbjct: 19 QYYP--ISVAPMMDRTDRHFRYFMRQITQHTLLYTEMVTTAAIIH--GDREHLLGFSPEE 74
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
P+VLQ+GG N LAK +A YDEINLN GCPS +V G FG LM+ P+ V +
Sbjct: 75 KPLVLQVGGDNPQELAKCARIAEDMGYDEINLNVGCPSSRVQD-GNFGACLMMQPEKVAD 133
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + A N+P+SVK RIGVDD DSY + F+ + +LS + F +H+RKA L G+SP
Sbjct: 134 CVAAMVAAVNIPISVKHRIGVDDVDSYENMAAFVNAI-ALSGCKVFNVHARKAWLKGLSP 192
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL+Y + L DFPDL +NGG+ + +V L + VM+GRAAY NP
Sbjct: 193 KENRDIPPLRYADVHRLKADFPDLFIEINGGLTNLAQVQEQL-ESVDAVMIGRAAYNNP- 250
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y VD+ YG + TR QVVE Y D + + + + +L F +P
Sbjct: 251 YLFSQVDSQFYGDENIPRTRHQVVEAMLPYVD----KWTAKGLKLHKITRHMLQLFAGKP 306
Query: 305 GNGLFKR 311
G+ +K+
Sbjct: 307 GSRAWKQ 313
>gi|262393119|ref|YP_003284973.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
gi|262336713|gb|ACY50508.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
Length = 315
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 189/323 (58%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LAK +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ + ++
Sbjct: 58 PEDLAKCAKLAQERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKGVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F S PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|157372686|ref|YP_001480675.1| tRNA-dihydrouridine synthase A [Serratia proteamaculans 568]
gi|157324450|gb|ABV43547.1| TIM-barrel protein, yjbN family [Serratia proteamaculans 568]
Length = 336
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 181/309 (58%), Gaps = 10/309 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S
Sbjct: 7 ASKYAANRFSIAPMLDWTDRHCRYFHRLLTKDTLLYTEMVTTGAIIHGKGD---YLAYSE 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V
Sbjct: 64 EEHPVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+
Sbjct: 123 ADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP+LT +NGG+ T++E L+ VM+GR AYQN
Sbjct: 183 SPKENREVPPLDYPRVYQLKRDFPELTLAINGGVKTLEEAKQHLQH-LDGVMMGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P L VD+ ++G + + ++E Y + L +N ++ + + +L F
Sbjct: 242 PG-ILARVDSELFGRQTEVMDSVAIIESLYPYIEREL----SNGTYLGHITRHILGLFQG 296
Query: 303 EPGNGLFKR 311
PG ++R
Sbjct: 297 VPGARQWRR 305
>gi|90416108|ref|ZP_01224041.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
gi|90332482|gb|EAS47679.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
Length = 322
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPM+DWTD H R RLIS+H LYTEML II+ G+ D L +HP+ LQ
Sbjct: 6 FCVAPMLDWTDRHCRYFLRLISQHTMLYTEMLTTGAIIH--GDSDYHLQMDAFEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA A ++A Y+Y EINLNCGCPS +V +G FG +M D + +S +
Sbjct: 64 LGGSSPADLATACKMAAQYDYAEINLNCGCPSDRVQ-NGMFGAVMMKDAEITANCVSAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++P++VK RIGVD++DSY L DF+ +V+ S F++H+RKA L G+SP +NR I
Sbjct: 123 EAVDLPITVKHRIGVDEYDSYEFLRDFVGRVTE-SGCEVFLVHARKAWLKGLSPKQNREI 181
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y+ Y L +DFP L +NGG+ T+++ L+ VMVGR Y NP Y L V
Sbjct: 182 PELNYDRVYRLKKDFPQLEIIINGGVTTLEQSKEHLQH-LDGVMVGREVYSNP-YLLASV 239
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYGA TRRQ+ E++ Y D L + + + + +L FH PG F+
Sbjct: 240 DQDIYGASHGVKTRRQIAEEFLQYADNEL----SKGTKLNAMTRHILGLFHGMPGARQFR 295
Query: 311 R 311
R
Sbjct: 296 R 296
>gi|410450803|ref|ZP_11304833.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
gi|410015346|gb|EKO77448.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
Length = 344
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 186/300 (62%), Gaps = 8/300 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM +P+ V E + +
Sbjct: 73 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKNPERVAELVFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FPDL +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVEALKREFPDLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+R +V+ + + Y + ++ N +PH ++ +L FH G F+R
Sbjct: 249 SLFFNDDSPSLSRGEVLLRMRDYVEEVVLKEKNGKPH--HALRHILGLFHGVKGARSFRR 306
>gi|333982800|ref|YP_004512010.1| hypothetical protein [Methylomonas methanica MC09]
gi|333806841|gb|AEF99510.1| TIM-barrel protein, yjbN family [Methylomonas methanica MC09]
Length = 323
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 180/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPM+DWTD H R RL+S+HA LYTEM+ I+ QGN R L F+PE+ P+ LQ
Sbjct: 9 FCVAPMLDWTDRHCRYFYRLLSRHAVLYTEMVTTGAIL--QGNQQRHLQFNPEEQPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA+ ELA Y YDE+NLN GCPS +V +G FG LM +P+ V ++ +
Sbjct: 67 LGGSHPQDLARCAELAEQYGYDEVNLNIGCPSDRVQ-NGRFGACLMAEPELVAACVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY +L FI V++ FI+H+RKA L+G+SP +NR I
Sbjct: 126 QAVSIPVTVKSRIGIDERDSYEELTQFIATVAA-GGCDTFIVHARKAWLSGLSPKQNRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L DFP+L +NGGI ++D + AL K VM+GR Y NP Y L V
Sbjct: 185 PPLCYEMVYRLKHDFPELDIIINGGITSLD-ASLALLKHVDGVMLGREVYHNP-YLLSEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D +YG TR+ V+ Y L G NN + + LL FH G
Sbjct: 243 DRCLYGDDYPQKTRQDVILAMLPYVRQQLQHGVRLNN------IARHLLGLFHGVEGARA 296
Query: 309 FKR 311
++R
Sbjct: 297 WRR 299
>gi|422005791|ref|ZP_16352957.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417255540|gb|EKT85011.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 344
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 196/333 (58%), Gaps = 9/333 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 73 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FP+L +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVEALKREFPNLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+R +V+ + + Y + ++ N +PH ++ +L FH G F+R
Sbjct: 249 SLFFDDDSPSLSRGEVLLRMRDYVEEVVLKEKNGKPH--HALRHILGLFHGVKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 344
+ L + + IPD LD ++
Sbjct: 307 TLTERMYHDYS-SDLLSDAVQEIPDDTLDLKLQ 338
>gi|418745884|ref|ZP_13302219.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
gi|418754487|ref|ZP_13310713.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|409965207|gb|EKO33078.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|410793268|gb|EKR91188.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
Length = 344
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 196/333 (58%), Gaps = 9/333 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 73 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FP+L +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVEALKREFPNLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+R +V+ + + Y + ++ N +PH ++ +L FH G F+R
Sbjct: 249 SLFFNNDSPSLSRGEVLLRMRDYVEEVVLKEKNGKPH--HALRHILGLFHGVKGARSFRR 306
Query: 312 KADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 344
+ L + + IPD LD ++
Sbjct: 307 TLTERMYHDYS-NDLLSDAVQEIPDDTLDLKLQ 338
>gi|354596235|ref|ZP_09014252.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
gi|353674170|gb|EHD20203.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
Length = 346
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/259 (46%), Positives = 166/259 (64%), Gaps = 6/259 (2%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
+++ P FSVAPM+DWTD H R R +++HA LYTEM+ II+ +G+ +LA+S E
Sbjct: 21 QKHPPHRFSVAPMLDWTDRHCRYFLRRLTRHALLYTEMVTTGAIIHGKGD---YLAYSEE 77
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ + LA+ +LA YDE+NLN GCPS +V +G FG LM + V
Sbjct: 78 EHPLALQLGGSDPEALAQCAQLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAPLVA 136
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + +PV+VK RIG+DD DSY LCDFI+ V+ FI+H+RKA L+G+S
Sbjct: 137 DCVKAMKDRVAIPVTVKTRIGIDDRDSYEFLCDFIHTVAERGGCDTFIVHARKAWLSGLS 196
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AY NP
Sbjct: 197 PKENREIPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKIHLQH-LDGVMMGREAYHNP 255
Query: 244 WYTLGHVDTAIYGAPSSGL 262
L VD ++G P++ L
Sbjct: 256 G-ILAQVDAELFGVPAASL 273
>gi|54310405|ref|YP_131425.1| tRNA-dihydrouridine synthase A [Photobacterium profundum SS9]
gi|46914846|emb|CAG21623.1| putative NifR3/Smm1 family protein [Photobacterium profundum SS9]
Length = 346
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S +A LYTEM+ II+ +G+ FL F+ E++P+ LQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGD---FLTFNEEENPVALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM + V +S +
Sbjct: 84 LGGSNPVDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEADLVALCVSSMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ S +F +H+RKA L G+SP ENR I
Sbjct: 143 EVVDIPVTVKTRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP++ +NGGI T DE+ L K VMVGR AYQNP Y + V
Sbjct: 203 PPLDYPRVYQLKRDFPNIIMAINGGIKTFDEMEEHL-KHMDGVMVGREAYQNP-YLMAEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + RR+ E Y + L N + + + +L F PG ++
Sbjct: 261 DQRLFGSSKPIIKRREAAEAMFPYIERQLA----NGSKLGHITRHMLGLFQGIPGGRQWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|163749318|ref|ZP_02156567.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
gi|161331037|gb|EDQ01963.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
Length = 310
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 181/296 (61%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD HYR LAR++S LYTEM+ II+ +G+ +LA++ E++P+ LQ+GGSN
Sbjct: 1 MLDWTDRHYRYLARIMSTELLLYTEMVTTGAIIHGKGD---YLAYNSEENPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V G FG LM DPK V E ++ + ++
Sbjct: 58 PQDLATCAKLAAERGYDEINLNVGCPSDRVQS-GRFGACLMADPKLVAECVTAMKQVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L +F+ VS + FI+H+RKA L G+SP +NR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTEFVDTVSDVG-CDTFIVHARKAWLQGLSPKQNREIPPLDY 175
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ Y L +D+P L ++NGG+ T+DE L VMVGR AYQNP Y L VD +
Sbjct: 176 QRVYRLKQDYPKLHISINGGVKTLDECRQHLLH-IDGVMVGREAYQNP-YILAEVDQRLC 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ S L+R V+EK+ Y + L G + + + + F EPG+ ++R
Sbjct: 234 GSNKSVLSRDAVLEKFIPYIEKHLVEGG----RLNHITRHMTGMFQGEPGSRAWRR 285
>gi|90408335|ref|ZP_01216499.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
gi|90310566|gb|EAS38687.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
Length = 333
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 194/335 (57%), Gaps = 18/335 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
++++ FSVAPM+DWTD H R R++SK LYTEM+ I+Y +G+ +L
Sbjct: 8 KKHVSNRFSVAPMLDWTDRHCRHFHRILSKETLLYTEMVTTGAILYGKGD---YLQKGDA 64
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GG +LAKA YDEINLN GCPS +V +G FG LM +P+ V
Sbjct: 65 EHPVALQLGGFAAVDLAKAALAGKERGYDEINLNIGCPSDRVQ-NGRFGACLMAEPELVA 123
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+A++ + T +P++VK RIG+DD DSY LCDFI KV + +FIIH+RKA L+G+S
Sbjct: 124 DAVAAMRDATGLPITVKTRIGIDDLDSYEFLCDFISKVHA-KGCDNFIIHARKAWLSGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P +NR +PPL ++ Y L +DFP L +NGGI T+DE L+ VM+GR AY NP
Sbjct: 183 PKQNRDVPPLDHDRVYQLKKDFPQLMIAINGGIKTLDECKTHLQH-LDGVMLGREAYANP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L VD A++G LTR +V+E+ Y + L +N ++ + + +L F
Sbjct: 242 -YLLSQVDKALFGCTKKPLTRFEVLEQMYPYIEQQL----SNGSYLNHMGRHMLGLFQGL 296
Query: 304 PGNGLFKRKAD-------AAFQTCKTVKSFLEETI 331
PG ++R + + + SF+ E I
Sbjct: 297 PGARAWRRHLSENGHLPGSGIEVMQKAASFVTEEI 331
>gi|328950080|ref|YP_004367415.1| hypothetical protein Marky_0554 [Marinithermus hydrothermalis DSM
14884]
gi|328450404|gb|AEB11305.1| TIM-barrel protein, yjbN family [Marinithermus hydrothermalis DSM
14884]
Length = 339
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 189/337 (56%), Gaps = 18/337 (5%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P S+APMMDWTD H+R L R +S+ LYTEM+ +I+ G+ R LAF PE+HP+
Sbjct: 9 PHTLSIAPMMDWTDRHFRYLMRQVSRKVRLYTEMVVDRALIH--GDRARLLAFHPEEHPL 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQIG S+ D +A + A+ YDEINLN GCPS +V G FG LM DP+ V E
Sbjct: 67 ALQIGSSDPDLAFEAARIGVAWGYDEINLNVGCPSNRVQ-EGGFGACLMADPERVREITR 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ V V+VK RIG+D D Y L F+ V+ T FI+H+RKA L G+SP EN
Sbjct: 126 AMREAAPV-VTVKHRIGIDHLDEYRHLARFVETVAETGVT-VFIVHARKAWLQGLSPKEN 183
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+Y Y L +DFP+LT LNGG+ T+D A L + VM+GRAAY+ PW
Sbjct: 184 RAVPPLRYGEVYRLKQDFPELTIVLNGGVRTLDAAMAHL-EHTDGVMIGRAAYETPWAWA 242
Query: 248 GHVDTAIYG---APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
G D ++G APS RR+VV Y +A L P +R + + LL+ F P
Sbjct: 243 G-ADQQVFGLDRAPS----RREVVMAMLPYIEARL---MEGVP-LRRIARHLLNLFKGAP 293
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
G F+R ++ + AIPD+VLD
Sbjct: 294 GGRRFRRVLSEGLLDPTAGPELVQRALEAIPDAVLDE 330
>gi|425064138|ref|ZP_18467263.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
gi|404381731|gb|EJZ78199.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
Length = 327
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ E+A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAEIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|344343484|ref|ZP_08774352.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
gi|343804907|gb|EGV22805.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
Length = 328
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H R RLIS+H LYTEM+ +++ G+ +RFL F P +HP+ LQ
Sbjct: 9 LSIAPMLDWTDRHCRYFLRLISRHTLLYTEMVTTGALLH--GDRERFLRFDPSEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A L Y YDEIN+N GCPS +V +G FG LM +P V + + +
Sbjct: 67 LGGSDPADMASCARLGAEYGYDEININVGCPSDRVQ-NGRFGACLMAEPGVVADCVRAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
VPV+VK RIG+DD DSY +L DF+ + I+H+RKA L+G+SP ENR I
Sbjct: 126 DAVAVPVTVKSRIGIDDRDSYGELVDFV-GAQVEAGCDALIVHARKAWLSGLSPKENRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L RDFP L+ +LNGG+ +D+ AL + VM+GR AY NPW L
Sbjct: 185 PPLRYDVVLQLKRDFPALSISLNGGVQDLDQA-CALLETLDGVMIGREAYHNPW-ILAAA 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ P+ TR QV+E+ Y I P + + + LL F PG +++
Sbjct: 243 DARIFADPTPPPTRHQVIERMLPY---IQRELDAGVP-LTAISRHLLGLFQGRPGARVWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|188025481|ref|ZP_02958806.2| hypothetical protein PROSTU_00565 [Providencia stuartii ATCC 25827]
gi|188023335|gb|EDU61375.1| tRNA dihydrouridine synthase A [Providencia stuartii ATCC 25827]
Length = 336
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 180/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SK+ LYTEM+ II+ +G+ +LAFS E+ P+ LQ
Sbjct: 19 FSVAPMLDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGD---YLAFSEEEQPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+ +LA YDEINLN GCPS +V +G FG LM D + V + + +
Sbjct: 76 LGGSDPEALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMQ 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS+ FIIH+RKA L+G+SP ENR I
Sbjct: 135 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E LR VMVGR AYQNP L V
Sbjct: 195 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ + + V + Y + L GTY + + + +L F PG
Sbjct: 253 DNQLFDSQLPVVNAVDAVRQMFPYIEKELSQGTY------LGHITRHMLGIFQGIPGARQ 306
Query: 309 FKR 311
++R
Sbjct: 307 WRR 309
>gi|262275131|ref|ZP_06052942.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
gi|262221694|gb|EEY73008.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
Length = 315
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 189/322 (58%), Gaps = 14/322 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R++SK+A LYTEM+ II+ +G+ FLAF+ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRILSKNALLYTEMVTTGAIIHGKGD---FLAFNEEEHPVALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM + + V + ++ + ++
Sbjct: 58 PADLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAELVAQCVAAMKEVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS +F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLVDFVRTVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DFP LT +NGGI +++E A L K VM+GR AYQ+P Y L VD+ ++
Sbjct: 177 PRVYQLKKDFPHLTMAINGGIKSLEEAEAHL-KFMDGVMIGREAYQSP-YLLAEVDSRLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
G+ + + R + V Y +A L GTY N+ + + +L F + PG ++R
Sbjct: 235 GSDAPIIKRSEAVRAIFPYIEAELSKGTYLNH------ISRHMLGLFQNMPGARQWRRYI 288
Query: 314 DAAFQTCKTVKSFLEETIVAIP 335
LE + IP
Sbjct: 289 SENAHKPGAGTEVLEAALANIP 310
>gi|312173953|emb|CBX82207.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC BAA-2158]
Length = 349
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 189/340 (55%), Gaps = 21/340 (6%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y P FSVAPM+DWTD H R R +++ LYTEM+ II+ +G+ +LAF
Sbjct: 20 APKYSPSRFSVAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGD---YLAFGS 76
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA+ +LA Y EINLN GCPS +V +G FG LM + + V
Sbjct: 77 EEHPVALQLGGSDPAALAQCAKLAERRGYQEINLNVGCPSDRVQ-NGRFGACLMGEAQLV 135
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + +VPV+VK RIG+DD DSY LCDF+ VS FIIH+RKA L+G+
Sbjct: 136 ADGIKAMRDVVSVPVTVKTRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGL 195
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP LT ++NGG+ ++ E L+ VM+GR AYQN
Sbjct: 196 SPKENREVPPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQH-LDGVMMGREAYQN 254
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFF 300
P L VD ++G S + VV Y + L GTY + V + +L F
Sbjct: 255 PGL-LAQVDRELFGCTSPSIDPIAVVRSMYPYIERELAGGTY------LGHVTRHMLGLF 307
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEETIVA 333
PG ++R KA A + S + E + A
Sbjct: 308 QGIPGARQWRRYLSENAHKAGAGIDVVEKALSMVAEKVPA 347
>gi|386742972|ref|YP_006216151.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
gi|384479665|gb|AFH93460.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
Length = 327
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 180/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SK+ LYTEM+ II+ +G+ +LAFS E+ P+ LQ
Sbjct: 10 FSVAPMLDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGD---YLAFSEEEQPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+ +LA YDEINLN GCPS +V +G FG LM D + V + + +
Sbjct: 67 LGGSDPEALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E LR VMVGR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ + + V + Y + L GTY + + + +L F PG
Sbjct: 244 DNQLFDSQLPVVNAVDAVRQMFPYIEKELSQGTY------LGHITRHMLGIFQGIPGARQ 297
Query: 309 FKR 311
++R
Sbjct: 298 WRR 300
>gi|163803123|ref|ZP_02197007.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
gi|159173115|gb|EDP57947.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
Length = 318
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 188/326 (57%), Gaps = 10/326 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H R RL++K LYTEM+ II+ +G+ FLA + E+HP+ LQ+G
Sbjct: 1 MAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAHNEEEHPLALQLG 57
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 58 GSNPADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDV 116
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
+VPV+VK RIG+DDHDSY L DF+ VS F IH+RKA L+G+SP ENR IPP
Sbjct: 117 VDVPVTVKTRIGIDDHDSYQFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L VD
Sbjct: 177 LDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLAFVDQ 234
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
++G+ + R Q+VE+ Y +A L ++ + + +L F S PG ++R
Sbjct: 235 ELFGSNAPVKKRSQIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWRRY 290
Query: 313 ADAAFQTCKTVKSFLEETIVAIPDSV 338
+ L+ + IP +
Sbjct: 291 ISENAHKPGSGLEVLQAALAKIPKEL 316
>gi|407802431|ref|ZP_11149272.1| tRNA-dihydrouridine synthase A [Alcanivorax sp. W11-5]
gi|407023586|gb|EKE35332.1| tRNA-dihydrouridine synthase A [Alcanivorax sp. W11-5]
Length = 311
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 181/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWT YR LAR+IS+H LYTEM+ A +++ G D L + +HP+ LQ+GGS
Sbjct: 1 MMDWTTRDYRYLARMISRHTLLYTEMVTAHAVLH--GARDYLLGYDDTEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A + Y YDEINLN GCPS +V G FG LM +P V E ++ + A +V
Sbjct: 59 PAQLAEAARIGADYGYDEINLNVGCPSDRVQS-GRFGACLMAEPVLVAECVAAMQAAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD D Y L FI V + + F IH+RKA+L+G+SP ENR IPPL Y
Sbjct: 118 PVTVKSRIGIDDQDEYAFLHTFIDTVRA-AGCHSFTIHARKAILSGLSPKENREIPPLIY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E YA+ +DFPD LNGGI +++V L + VM+GR AYQNPW+ L D ++
Sbjct: 177 ERAYAVKQDFPDCEIILNGGIRNMEQVAEHLHQ-VDGVMIGREAYQNPWF-LAEADPVLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
+P+ R +VE + Y L H + V++ +L+ F S PG F+R
Sbjct: 235 NSPAPFTDRHALVEAFMPY----LERRYAEGVHPKHVLRHVLNLFQSVPGARAFRRHLST 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+ L E + +P
Sbjct: 291 RAHLPDATPAVLLEALQQVP 310
>gi|415770748|ref|ZP_11485017.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656654|gb|EGY74263.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 270
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 165/260 (63%), Gaps = 7/260 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ + II+ + + L F P + P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDPAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LCDFI KV + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCDFIEKVQQ-AGCREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTIDEMQQHLQR-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEK 270
D A++ A + +T R+ VEK
Sbjct: 246 DQALFNANAPIVTPREAVEK 265
>gi|34496379|ref|NP_900594.1| tRNA-dihydrouridine synthase A [Chromobacterium violaceum ATCC
12472]
gi|34102232|gb|AAQ58598.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 347
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 178/306 (58%), Gaps = 11/306 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR AR I++H WLYTEM+ ++ G++ R L F +H
Sbjct: 23 LPPRRLSVAPMLDWTDRHYRYFARQITRHTWLYTEMVTTGALL--NGDVARHLRFDEAEH 80
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS LA +LA + YDE+NLN GCPS +V G FG LM +P+ V +
Sbjct: 81 PVALQLGGSEPAELATCAKLAQQWGYDEVNLNVGCPSERVQ-KGAFGACLMAEPQLVSDC 139
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++ V+VK RIG+D + Y+ L +F+ V+ + R FI+H+R A+L G+SP
Sbjct: 140 VKAMRDAVDIDVTVKHRIGIDQIEHYDYLREFVDTVAE-AGCRTFIVHARNAILKGLSPK 198
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L R+ PDL +NGG+ T E+ L K VMVGR AY NPW
Sbjct: 199 ENREIPPLKYDYVYRLKRERPDLEILINGGVKTNAEIAEHL-KHVDGVMVGREAYHNPWL 257
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG ++ R VVE Y A LG N VR + + +L F PG
Sbjct: 258 -MADWDALFYGDETARPERVAVVEAMMPYVTARLGDGSN----VRHIARHILGLFQGLPG 312
Query: 306 NGLFKR 311
++R
Sbjct: 313 ARNWRR 318
>gi|395761105|ref|ZP_10441774.1| tRNA-dihydrouridine synthase A [Janthinobacterium lividum PAMC
25724]
Length = 317
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 179/296 (60%), Gaps = 7/296 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R I++H WLYTEM+ ++Y G+++R L F+ E+HP+ LQ+GGS+
Sbjct: 1 MMDWTDRHCRKFHREITRHTWLYTEMVTTGALVY--GDVERHLRFNEEEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + +L + YDE+NLNCGCPS +V G FG LM +P+ V + + + ++
Sbjct: 59 PTDLATSAKLGQQWGYDEVNLNCGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDVVDI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VK RIG+DD +SY+ + DF+ V+ + + FI+H+R A+L G+SP ENR +PPLKY
Sbjct: 118 DVTVKHRIGIDDSESYDFVRDFVGTVAD-AGCKTFIVHARNAILKGLSPKENREVPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP F +NGGI T+DE++ L+ VM+GR AY NP Y + D Y
Sbjct: 177 DYAYRLKRDFPQFEFIINGGIKTLDEIDLHLQH-LDGVMLGREAYHNP-YLMAQFDQRYY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + TR QV+E Y L R + V + +L + PG F++
Sbjct: 235 GDDTPVKTREQVLEVMIPYIRVQLEKEA-GRLKLNSVTRHMLGLMQNLPGARGFRQ 289
>gi|270263331|ref|ZP_06191601.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386823311|ref|ZP_10110462.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
gi|270043019|gb|EFA16113.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386379771|gb|EIJ20557.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
Length = 336
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 179/309 (57%), Gaps = 10/309 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S
Sbjct: 7 ASKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAYSE 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V
Sbjct: 64 EEHPVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+
Sbjct: 123 ADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP LT +NGG+ T++E L VM+GR AYQN
Sbjct: 183 SPKENREVPPLDYPRVYQLKRDFPQLTLAINGGVKTLEEAKQHLEH-LDGVMMGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P L VD+ ++G + + ++E Y + L +N ++ + + +L F
Sbjct: 242 PG-ILARVDSELFGRQTEVMDSVAIIESLYPYIEREL----SNGTYLGHITRHILGLFQG 296
Query: 303 EPGNGLFKR 311
PG ++R
Sbjct: 297 VPGARQWRR 305
>gi|167566497|ref|ZP_02359413.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis EO147]
gi|167570050|ref|ZP_02362924.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis C6786]
Length = 339
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 172/280 (61%), Gaps = 8/280 (2%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+ P SVAPMMDWTD H R+ R IS+H WLYTEM+ +++ G++ R LAF+P +
Sbjct: 6 SFSPRRVSVAPMMDWTDRHCRSFHRTISRHTWLYTEMVTTGALVH--GDVARHLAFTPGE 63
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
P+ LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 64 APVALQLGGSEPADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVAD 122
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + ++PV+VK RIGVD + Y + DF+ V++ + FI+H+R A+L G+SP
Sbjct: 123 CVKAMCDAVSIPVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFIVHARNAILKGLSP 181
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPLKY+Y Y L +DFP L +NGGI T+DEV L+ VM+GR AY NP
Sbjct: 182 KENREIPPLKYDYAYRLKQDFPQLEIIVNGGITTLDEVERHLQH-VDGVMLGREAYHNP- 239
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
Y L VD YGA + TR V + Y L GTY
Sbjct: 240 YVLADVDARFYGAATPAPTREAVEAQLVEYCATELARGTY 279
>gi|119492928|ref|ZP_01623958.1| hypothetical protein L8106_26412 [Lyngbya sp. PCC 8106]
gi|119452854|gb|EAW34028.1| hypothetical protein L8106_26412 [Lyngbya sp. PCC 8106]
Length = 338
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R R I+K LYTEM+ + II+ G+ ++ L FSPE+ P+VLQ
Sbjct: 20 LSVAPMMDRTDRHFRYFMRQITKRTLLYTEMVTSAAIIH--GDREKLLGFSPEEKPLVLQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
IGG LA E+A YD++NLN GCPS +V G FG LM P+ V EA+S +
Sbjct: 78 IGGDQPQELAICAEIAEDMGYDQVNLNVGCPSSRVQD-GNFGACLMAQPQRVAEAVSKMQ 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV++K RIG+DD D Y + +F+ ++ S S + F +H+RKA L G+SP +NR I
Sbjct: 137 QRVKIPVTIKHRIGIDDRDRYEDMANFV-EIVSQSGCQQFTVHARKAWLQGLSPKDNRNI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE + L ++FP L +NGG+ +V+ L K VM+GRAAY NP Y
Sbjct: 196 PPLRYEDVHQLKQEFPHLFIEINGGLTIFSQVHEQL-KSVDAVMLGRAAYDNP-YLFATA 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG ++ LTR QVVE Y L + + + +M+ +L F +PG +K
Sbjct: 254 DQEFYGEKTTPLTRHQVVESMFPY----LEYWLSRGVKLNSIMRHVLQLFSGQPGTKAWK 309
Query: 311 R 311
R
Sbjct: 310 R 310
>gi|406915515|gb|EKD54589.1| hypothetical protein ACD_60C00066G0003 [uncultured bacterium]
Length = 319
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 180/301 (59%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+ TD H R RLI+ LYTEM+ +E +I+ G+ R LAF +HP+ LQ
Sbjct: 8 ISVAPMMNCTDRHARYFLRLIAPSVLLYTEMITSEALIH--GDYARLLAFDSLEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS L ++ +LA + YDE+NLN GCPS +V G FG LML+P V E +S +
Sbjct: 66 LGGSEPSKLKRSAQLAEDFGYDEVNLNVGCPSHRVKA-GRFGACLMLEPDRVAECVSAMC 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VKCRIGVD DSY +L F+ KVS + R FIIH+RKA L GISP +NR I
Sbjct: 125 AAVKIPVTVKCRIGVDHEDSYEKLAGFVQKVSE-AGCRVFIIHARKAWLTGISPKQNREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE + RDF L+ +NGGI TV +V L VM+GR AY NP++ L +
Sbjct: 184 PPLQYEVVRQIKRDFQALSIVINGGIKTVKDVEEHL-PYVEGVMIGREAYSNPYF-LAAL 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
+ PS ++R+ V+EK+ Y L N+ + V + +L + + G +++
Sbjct: 242 QEKFFLTPS--VSRKAVIEKFIPYIQDQL----KNKVKLSSVTRHILGLYQGQKGARIWR 295
Query: 311 R 311
R
Sbjct: 296 R 296
>gi|410638177|ref|ZP_11348741.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
gi|410142097|dbj|GAC15946.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
Length = 345
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R IS+HA LYTEM+ II+ +G+ +LAF+ ++HP+ LQ
Sbjct: 12 ISVAPMLDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGD---YLAFNHQEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ LA YDE+N+N GCPS +V +G FG LM +P+ V + + +
Sbjct: 69 LGGSDPTDMARCAVLAQQRGYDEVNINVGCPSDRVQ-NGRFGACLMAEPETVAQCIKSMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ D Y L FI V+ + FI+H+RKA L G+SP ENR I
Sbjct: 128 AEIDIPVTVKSRIGIDEMDEYEDLTRFITTVAD-AGCDTFIVHARKAWLKGLSPKENRDI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L FPDL ++NGG+ T+D+V L K VM+GR Y NP Y L V
Sbjct: 187 PPLMYERVYHLKEQFPDLHISINGGVKTLDDVALHL-KYIDGVMIGREVYSNP-YILADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D YG TR VVE Y A L PH R + + +L F +PG +
Sbjct: 245 DKRFYGDNHKVPTRHDVVESMIEYAKAQL-----ELPHTRIWHIARHMLGLFQGQPGARI 299
Query: 309 FKR 311
++R
Sbjct: 300 WRR 302
>gi|374314399|ref|YP_005060828.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
gi|363988625|gb|AEW44816.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
Length = 328
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 188/307 (61%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y FSVAPM++WTD H R RL++K LYTEM+ II+ + + +LA++ E+
Sbjct: 8 KYHASRFSVAPMLNWTDRHCRYFHRLLTKETLLYTEMITTGAIIHSKKD---YLAYNEEE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+L LA +LA YDEINLN GCPS +V +G FG LM V +
Sbjct: 65 HPVSLQLGGSDLTALAFCAKLAEQRGYDEINLNVGCPSNRVQ-NGIFGACLMKKATLVAD 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + ++PV++K RIG+DD DSY LCDFIY VS+ F +H+RKALL+G++P
Sbjct: 124 SIKAMNDAVSIPVTLKTRIGIDDRDSYEFLCDFIYTVSNQGQCSMFTLHARKALLSGLNP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL Y Y L +DFP L +NGGINT++E + L+ VM+GRAAYQNP
Sbjct: 184 KQNREIPPLDYLRVYRLKQDFPALNIIINGGINTLEESSQHLQH-LDGVMMGRAAYQNPS 242
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L VD+ ++G S + ++E Y + L ++G H+ + + +L FF +
Sbjct: 243 ILL-EVDSRLFGMHSVVKKKISIIESMYPYIEREL-SHGT---HLSHITRHILGFFQGDH 297
Query: 305 GNGLFKR 311
G+ ++R
Sbjct: 298 GSRQWRR 304
>gi|52426107|ref|YP_089244.1| tRNA-dihydrouridine synthase A [Mannheimia succiniciproducens
MBEL55E]
gi|52308159|gb|AAU38659.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 189/326 (57%), Gaps = 18/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ A II+ + + L F P ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTAPAIIHAKYD---HLEFDPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V E + +
Sbjct: 70 LGGSDPEQLQHCAKLAEQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVAECVEKMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VK RIG+D+ DSY LCDFI KV S FI+H+RKA L+G+SP ENR I
Sbjct: 129 AEVEIPVTVKTRIGIDNLDSYQFLCDFIQKVHS-KGCNEFIVHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L+ ++NGGI T++E+ A L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYNRVYQLKRDFPQLSISINGGIKTIEEMTAHLQY-VDGVMVGREAYQNP-ALLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T R+ VEK Y + L + H+ +++ +L F + G ++
Sbjct: 246 DRALFDLNAPIVTPREAVEKMFPYIERQL----SRGVHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R K A + +T F+EE
Sbjct: 302 RLLSENAHKTGAGIEILETALHFVEE 327
>gi|408792502|ref|ZP_11204112.1| tRNA dihydrouridine synthase A [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408463912|gb|EKJ87637.1| tRNA dihydrouridine synthase A [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 323
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 183/319 (57%), Gaps = 9/319 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H+R L RLISK LYTEM+ I+ + N R+L FS E+HP+VLQ
Sbjct: 10 ISVAPMMDWTDRHFRFLMRLISKQTLLYTEMVTTGAILRGKDN-HRYLDFSKEEHPVVLQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA+ ++ Y YDEINLN GCPS +V G FG LM DP V E +
Sbjct: 69 LGGDSPVSLAECAKIGEDYGYDEINLNVGCPSDRVQS-GSFGACLMKDPDLVAEMVFACK 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
VPV+VK RIGV+ +SY L F+ K+++ + H I+H+R A+L G+SP ENRT+
Sbjct: 128 GKVKVPVTVKHRIGVNGKESYEDLHHFVSKINA-AGVDHSIVHARIAILEGLSPKENRTV 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L DFPDL T+NGGI T E+ L K VM+GRAAY NP Y V
Sbjct: 187 PPLRYEDVYRLKTDFPDLPITINGGIKTHSEIKEHLMK-VDGVMIGRAAYDNP-YMFYEV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG+ + +R V+ + Y + L G V +++ +L + E G ++
Sbjct: 245 DQLYYGSKENPPSREDVLRELIPYIRSSLARDGK----VHHILRHILGLYFGERGAREYR 300
Query: 311 RKADAAFQTCKTVKSFLEE 329
+ +S LE+
Sbjct: 301 KFLTDRMHLSGANESILED 319
>gi|418541069|ref|ZP_13106570.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|418547309|ref|ZP_13112472.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
gi|385359224|gb|EIF65198.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|385361779|gb|EIF67653.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
Length = 323
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 170/269 (63%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + + + ++
Sbjct: 59 PADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L +D Y
Sbjct: 177 DYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
GA + TR +V K Y A L GTY
Sbjct: 235 GASAPAPTREEVEAKLVEYCAAELARGTY 263
>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1]
gi|300075667|gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 357
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 11/310 (3%)
Query: 7 LPP-WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPMMDWTD H R R I++H WLYTEM+ +++ G++ R L F ++H
Sbjct: 22 LPPRTLSVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFDEQEH 79
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS +LA + +L + YDEINLNCGCPS +V G FG LM +P V +
Sbjct: 80 PVALQLGGSEPADLAHSAKLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMGEPTLVADC 138
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++ V+VK RIG+D+ +SY+ + DF+ +++ + + FI+H+R A+L G+SP
Sbjct: 139 VKAMRDAVSIDVTVKHRIGIDEVESYDFVRDFVGQIAE-AGCQTFIVHARNAILKGLSPK 197
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPLKY+Y Y L +DFP L +NGGI T+ E++ L K VM+GR AY NP+
Sbjct: 198 ENREIPPLKYDYAYQLKKDFPSLEILINGGIKTLPEIDEHL-KHVDGVMLGREAYHNPYL 256
Query: 246 TLGHVDTAIYGAPSSGL--TRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFH 301
G D Y A GL +R +V+E Y L +G+N +R + + +L
Sbjct: 257 MAG-FDARYYAALEGGLQRSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLMA 315
Query: 302 SEPGNGLFKR 311
PG F++
Sbjct: 316 GMPGARAFRQ 325
>gi|322834778|ref|YP_004214805.1| yjbN family TIM-barrel protein [Rahnella sp. Y9602]
gi|384259998|ref|YP_005403932.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
gi|321169979|gb|ADW75678.1| TIM-barrel protein, yjbN family [Rahnella sp. Y9602]
gi|380755974|gb|AFE60365.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
Length = 335
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 177/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++ LYTEM+ II+ +G+ +L F +HP+ LQ
Sbjct: 12 FSVAPMLDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGD---YLGFGDAEHPVSLQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM V + + +
Sbjct: 69 LGGSNPADLAHCAKLAEERGYDEINLNVGCPSDRVQ-NGMFGACLMGQASLVADCIKAMR 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI +VS FIIH+RKA L+G+SP ENR I
Sbjct: 128 DVVSIPVTVKTRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E L+ VMVGR AYQNP L +V
Sbjct: 188 PPLDYPRVYQLKRDFPHLTLAINGGIKTLEEAKTHLQY-MDGVMVGREAYQNPGLLL-NV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G+ + T ++ Y +A L GTY + + + +L F PG
Sbjct: 246 DRELFGSDAPLKTGPDIIRALYPYIEAELSKGTY------LGHITRHILGLFQGVPGARQ 299
Query: 309 FKR 311
F+R
Sbjct: 300 FRR 302
>gi|313667754|ref|YP_004048038.1| dihydrouridine synthase [Neisseria lactamica 020-06]
gi|313005216|emb|CBN86649.1| Putative dihydrouridine synthase [Neisseria lactamica 020-06]
Length = 336
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 9/313 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAVEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + ++PV+VK RIGVD Y + DF+ + + R FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVHIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACRTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T +E A + VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPELEIIINGGI-TANEAIAGHLQHVDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V++ Y A + +R +++ L H G
Sbjct: 243 VMHEWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKRK-ADAAF 317
++R +DAA
Sbjct: 301 ARTWRRMLSDAAL 313
>gi|417951078|ref|ZP_12594187.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
gi|342805351|gb|EGU40621.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
Length = 334
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S+ LYTEM+ I++ +G+ FL +S ++HP+ LQ
Sbjct: 15 LSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGD---FLEYSEQEHPLALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + +S +
Sbjct: 72 LGGSNPVDLAACAKLAVERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVADCVSAMK 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++P++VK RIG+DD DSY L FI VS F IH+RKA L+G+SP ENR I
Sbjct: 131 EVTDIPITVKTRIGIDDQDSYEFLTKFISTVSEKGGCEQFTIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y + +DF DL +NGGI T+++ L+ VM+GR AY +P + L V
Sbjct: 191 PPLDYDRAYQIKKDFSDLVIAVNGGITTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QVVE+ Y + L + G + H+ + +L F S PG ++
Sbjct: 249 DQQIFGLDTPIKKRSQVVEEMYPYIEREL-SKGASLGHIS---RHMLGLFQSMPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|83592956|ref|YP_426708.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum ATCC 11170]
gi|83575870|gb|ABC22421.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
rubrum ATCC 11170]
Length = 349
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 187/331 (56%), Gaps = 15/331 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R I+K LYTEM+ A+ +++ + RFL P++HP+ LQ
Sbjct: 21 LSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLH--ADPGRFLDHHPDEHPLALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+AT LA + + EINLN GCPS +V+ G FG LM DP V E +S +A
Sbjct: 79 LGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSS-GRFGACLMADPALVAECLSAMA 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+N PV++K RIG+DD DSY+QL F+ +V+ S I+H+RKA L G+SP ENR I
Sbjct: 138 EASNAPVTIKHRIGIDDLDSYDQLVGFVDQVAR-SGIATIIVHARKAWLKGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG------AHHVMVGRAAYQNPW 244
PPL+++ + L DFP L LNGGI T+ + L G VM+GRAAY+ P
Sbjct: 197 PPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYETP- 255
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L D I+G + +R +V Y DA+ P V+ + + +L FH +P
Sbjct: 256 YMLAQADGLIFGEATPAPSRHEVALALLPYLDAM---TARGEP-VKRLTRHILGLFHGQP 311
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
G ++R A L + + IP
Sbjct: 312 GARAYRRHLGEAGVRPDATAQVLIDALAHIP 342
>gi|84393138|ref|ZP_00991902.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
gi|84376190|gb|EAP93074.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
Length = 334
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 182/307 (59%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y SVAPM+DWTD H R RL+S+ LYTEM+ I++ +G+ FL ++ ++
Sbjct: 9 KYASNRLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMITTGAILHGKGD---FLEYNEQE 65
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V +
Sbjct: 66 HPLALQLGGSNPVDLAACAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAD 124
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+S + T++P++VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP
Sbjct: 125 CVSAMKEVTDIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSP 184
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y+ Y + +DF DL +NGG+ T+++ L+ VM+GR AY +P
Sbjct: 185 KENREIPPLDYDRAYQIKKDFSDLVIAVNGGVTTLEQTKEHLQH-LDGVMIGREAYHSP- 242
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
+ L VD I+G + R QVVE+ Y + L +N + + + +L F S P
Sbjct: 243 FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIEREL----SNGASLGHISRHMLGLFQSMP 298
Query: 305 GNGLFKR 311
G ++R
Sbjct: 299 GARQWRR 305
>gi|384263387|ref|YP_005418576.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
photometricum DSM 122]
gi|378404490|emb|CCG09606.1| Dihydrouridine synthase TIM-barrel protein yjbN [Rhodospirillum
photometricum DSM 122]
Length = 356
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 194/330 (58%), Gaps = 19/330 (5%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P VAPMMDWTD H R R IS+H LYTEM+ ++ + + G+ +R L PE+ P+
Sbjct: 20 PHRLCVAPMMDWTDRHDRWFLRQISRHTLLYTEMVTSQAL--RHGDPERLLGHDPEEAPL 77
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS+ ++LA A LA + + EINLN GCPS +V+ G FG LM +P V E +S
Sbjct: 78 ALQLGGSDPEDLAHAARLARPWGFCEINLNVGCPSDRVS-KGRFGACLMAEPALVAECLS 136
Query: 128 VIA-ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+A A +PV++K RIG+DD D+Y+ L F+ V S T FI+H+RKA L+G+SP E
Sbjct: 137 ALAEAVPGLPVTIKHRIGIDDLDTYDHLTRFVDHVRR-SGTTTFIVHARKAWLHGLSPKE 195
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG--------AHHVMVGRA 238
NRT+PPL+++ + L DFPDLT LNGGI ++D AAL +G VM+GRA
Sbjct: 196 NRTVPPLRHDVVHRLKADFPDLTIVLNGGITSLDAALAALTEGQTPEGLPPVDGVMIGRA 255
Query: 239 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 298
AY+ P Y L D ++GA + R +V YG+A++ P R + + +L
Sbjct: 256 AYETP-YILAEADQRVFGAETPVPDRAAIVRALIPYGEALV---ARGEPITR-LTRHVLG 310
Query: 299 FFHSEPGNGLFKRK-ADAAFQTCKTVKSFL 327
FH PG ++R ++ AF+ + L
Sbjct: 311 LFHGVPGARGWRRVLSEEAFRPGTDARVLL 340
>gi|418702736|ref|ZP_13263632.1| dihydrouridine synthase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418712340|ref|ZP_13273081.1| dihydrouridine synthase [Leptospira interrogans str. UI 08452]
gi|418730292|ref|ZP_13288793.1| dihydrouridine synthase [Leptospira interrogans str. UI 12758]
gi|410767602|gb|EKR38273.1| dihydrouridine synthase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410774969|gb|EKR54972.1| dihydrouridine synthase [Leptospira interrogans str. UI 12758]
gi|410791097|gb|EKR84777.1| dihydrouridine synthase [Leptospira interrogans str. UI 08452]
Length = 329
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 191/325 (58%), Gaps = 9/325 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H+R RLISKH +LYTEM+ T+++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MMDWTDRHFRYFLRLISKHTFLYTEMVHTGTVLH--GDRRKLLSYSPEELPLAIQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++
Sbjct: 59 PKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +PPL Y
Sbjct: 118 PITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +
Sbjct: 177 TYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 GENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTE 292
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 GMYSGYS-KDLLSKAIQEISNDSLD 316
>gi|226196332|ref|ZP_03791914.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|254297746|ref|ZP_04965199.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|386861884|ref|YP_006274833.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403518544|ref|YP_006652677.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
gi|418387439|ref|ZP_12967302.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|418534028|ref|ZP_13099879.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|418553491|ref|ZP_13118314.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|157807557|gb|EDO84727.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|225931549|gb|EEH27554.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|385360277|gb|EIF66216.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|385371644|gb|EIF76811.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|385376345|gb|EIF81036.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|385659012|gb|AFI66435.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403074186|gb|AFR15766.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
Length = 323
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 170/269 (63%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + + + ++
Sbjct: 59 PADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L +D Y
Sbjct: 177 DYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
GA + TR +V K Y A L GTY
Sbjct: 235 GASAPAPTREEVEAKLVEYCAAELARGTY 263
>gi|271501941|ref|YP_003334967.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech586]
gi|270345496|gb|ACZ78261.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech586]
Length = 344
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 179/307 (58%), Gaps = 22/307 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S +A LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSIAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGD---YLAYSDEEHPLALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 85 LGGSDPTALAQCAVLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEAQLVADCVTAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FI+H+RKA L+G+SP ENR I
Sbjct: 144 ERVSIPVTVKTRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T+ E L VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPSLTLAINGGIKTLAEAKQHLEH-VDGVMVGREAYQNPG-MLAQV 261
Query: 251 DTAIYGAPSSGLTRRQVVE------KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D ++ A S + VV+ + ++ G A LG + + +L F P
Sbjct: 262 DRDLFDATSVVPNQAAVVQAMYPYIERELSGGAALG----------HITRHMLGLFQGIP 311
Query: 305 GNGLFKR 311
G ++R
Sbjct: 312 GARQWRR 318
>gi|386349687|ref|YP_006047935.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum F11]
gi|346718123|gb|AEO48138.1| tRNA-dihydrouridine synthase A [Rhodospirillum rubrum F11]
Length = 348
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 187/331 (56%), Gaps = 15/331 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R I+K LYTEM+ A+ +++ + RFL P++HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLH--ADPGRFLDHHPDEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+AT LA + + EINLN GCPS +V+ G FG LM DP V E +S +A
Sbjct: 78 LGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSS-GRFGACLMADPALVAECLSAMA 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+N PV++K RIG+DD DSY+QL F+ +V+ S I+H+RKA L G+SP ENR I
Sbjct: 137 EASNAPVTIKHRIGIDDLDSYDQLVGFVDQVAR-SGIATIIVHARKAWLKGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG------AHHVMVGRAAYQNPW 244
PPL+++ + L DFP L LNGGI T+ + L G VM+GRAAY+ P
Sbjct: 196 PPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYETP- 254
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L D I+G + +R +V Y DA+ P V+ + + +L FH +P
Sbjct: 255 YMLAQADGLIFGEATPAPSRHEVALALLPYLDAM---TARGEP-VKRLTRHILGLFHGQP 310
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
G ++R A L + + IP
Sbjct: 311 GARAYRRHLGEAGVRPDATAQVLIDALAHIP 341
>gi|257059573|ref|YP_003137461.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8802]
gi|256589739|gb|ACV00626.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8802]
Length = 331
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 183/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM+ TD H+R R I+ H LYTEM+ + I Y G+ + L FSPE+ P+ LQ
Sbjct: 9 LSIAPMMERTDRHFRYFMRQITHHTLLYTEMIVTQAIRY--GDRTKLLGFSPEEKPLSLQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ +A + YDE+NLN GCPS +V G FG LML P+ V + +
Sbjct: 67 LGGDDPLELAECAIIAEDFGYDEVNLNVGCPSDRVQS-GNFGACLMLQPELVARCVEAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+P+++K RIGVD+ D Y L +F+ K+ S + + F +H+RKA L G+SP ENRTI
Sbjct: 126 KRVNIPITIKHRIGVDERDRYEDLVNFV-KIVSEAGCQRFTVHARKAWLKGLSPKENRTI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP L +NGGI T+D++ L + VM+GRAAY NP Y V
Sbjct: 185 PPLRYEEVYQLKKDFPQLFIEINGGIITLDQIEHHL-QFVDGVMIGRAAYDNP-YLFATV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG TR QVVEK Y D + NN + + + +L F PG +K
Sbjct: 243 DRDIYGQNIIPPTRHQVVEKMLPYID----YWVNNGLKLHAISRHILAIFGGVPGTKAWK 298
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +EE + +P
Sbjct: 299 RHISENAHLPGAGVKVIEEALGKVP 323
>gi|417769286|ref|ZP_12417203.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418681964|ref|ZP_13243185.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400326331|gb|EJO78599.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409948732|gb|EKN98719.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|455667507|gb|EMF32817.1| dihydrouridine synthase [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 329
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 191/325 (58%), Gaps = 9/325 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H+R RLISKH +LYTEM+ T+++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MMDWTDRHFRYFLRLISKHTFLYTEMVHTGTVLH--GDRRKLLSYSPEELPLAIQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++
Sbjct: 59 PKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +PPL Y
Sbjct: 118 PITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +
Sbjct: 177 TYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 GENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTE 292
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 GMYSGYS-KDLLSKAIQEISNDSLD 316
>gi|421494448|ref|ZP_15941796.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455737888|ref|YP_007504154.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400191310|gb|EJO24458.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455419451|gb|AGG29781.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 348
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LYTEM+ I++ +G+ +LA++ +HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGD---YLAYNEAEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A YDEINLN GCPS +V +G FG LM + V + ++ +
Sbjct: 85 LGGSDPAALAQCAKIAQERGYDEINLNVGCPSDRVQ-NGMFGACLMGNASLVADCVAAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++PV+VK RIG+DD DSY LCDF+ V+ F+IH+RKA L+G+SP ENR I
Sbjct: 144 DVTDIPVTVKTRIGIDDQDSYEFLCDFVGTVAERGGCEMFVIHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT LNGGI T++E L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKKDFPHLTMALNGGIKTLEEAKTHLQY-MDGVMVGREAYQNP-SILAQV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ A VE Y +A L T G H + + +L F PG ++
Sbjct: 262 DNALFDAALPVTDTVAAVEAMYPYIEAELAT-GTYLGH---ITRHMLGIFQGIPGARQWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|86148209|ref|ZP_01066506.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218708347|ref|YP_002415968.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
gi|85833979|gb|EAQ52140.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218321366|emb|CAV17316.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
Length = 333
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 182/307 (59%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y SVAPM+DWTD H R RL+S+ LYTEM+ I++ +G+ FL ++ ++
Sbjct: 8 KYAANRLSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGD---FLEYNEQE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V +
Sbjct: 65 HPLALQLGGSNPVDLAACAKLAGERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAD 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+S + T++P++VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP
Sbjct: 124 CVSAMKEVTDIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y+ Y + +DF DL +NGGI T+++ L+ VM+GR AY +P
Sbjct: 184 KENREIPPLDYDRAYQIKKDFSDLVIAVNGGITTLEQTKEHLQH-LDGVMIGREAYHSP- 241
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
+ L VD I+G + R QVVE+ Y + L +N + + + +L F S P
Sbjct: 242 FILAEVDQQIFGLDTPIKKRSQVVEEMYPYIERQL----SNGASLGHISRHMLGLFQSMP 297
Query: 305 GNGLFKR 311
G ++R
Sbjct: 298 GARQWRR 304
>gi|365846158|ref|ZP_09386663.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364574270|gb|EHM51735.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 332
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGHGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMAINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-MLTAV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ A ++ VV Y + L +N ++ + + +L F PG ++
Sbjct: 249 DREIFAASAADPDPVAVVRAMYPYIEREL----SNGTYLGHMTRHMLGLFQGIPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|323495575|ref|ZP_08100649.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
gi|323319456|gb|EGA72393.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
Length = 333
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y FS+APM+DWTD H R RL++ LYTEM+ II+ +G+ FLA++ E+
Sbjct: 8 KYAANRFSIAPMLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGD---FLAYNQEE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V +
Sbjct: 65 HPVALQLGGSNPQDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQ 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + ++PV+VK RIG+DD DSY L DF+ V+ F IH+RKA L+G+SP
Sbjct: 124 CVASMREVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y Y L +DF L +NGG+ T+++ L VMVGR AYQNP
Sbjct: 184 KENREIPPLDYPRAYQLKKDFSHLNIAVNGGVKTLEDSLVHLEH-LDGVMVGREAYQNP- 241
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L VD I+G R QVVE+ Y +A L + ++ + + ++ F + P
Sbjct: 242 YLLAQVDQQIFGLDKPVKKRSQVVEEMYPYIEAQL----SKGAYLGHITRHMIGLFQAMP 297
Query: 305 GNGLFKR 311
G ++R
Sbjct: 298 GARQWRR 304
>gi|417851442|ref|ZP_12497187.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219514|gb|EGP05163.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 327
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAKIAQQLGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|416181733|ref|ZP_11611738.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
gi|325134929|gb|EGC57561.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
Length = 336
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 180/308 (58%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRHLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEVYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V++ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|167824321|ref|ZP_02455792.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 9]
Length = 334
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 170/269 (63%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MMDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + + + ++
Sbjct: 59 PADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L +D Y
Sbjct: 177 DYAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
GA + TR +V K Y A L GTY
Sbjct: 235 GASAPAPTREEVEAKLVEYCAAELARGTY 263
>gi|90414453|ref|ZP_01222429.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
gi|90324458|gb|EAS41017.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
Length = 346
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S +A LYTEM+ II+ +G+ FL F+ E++P+ LQ
Sbjct: 27 FSVAPMLDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGD---FLTFNEEENPVALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM + V +S +
Sbjct: 84 LGGSNPVDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEADLVALCVSSMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ S +F +H+RKA L G+SP ENR I
Sbjct: 143 EVVDIPVTVKTRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKENREI 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP+L +NGGI T DE+ L VMVGR AYQNP Y + V
Sbjct: 203 PPLDYPRVYQLKRDFPNLIMAINGGIKTFDEMEEHLNH-MDGVMVGREAYQNP-YLMAEV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + RR+ E Y + L N + + + +L F PG ++
Sbjct: 261 DQRLFGCSKPIIKRREAAEAMFPYIERQLA----NGSKLGHITRHMLGLFQGIPGGRQWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|399521008|ref|ZP_10761780.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111497|emb|CCH38339.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 391
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 182/308 (59%), Gaps = 10/308 (3%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L FSVAPMMDWTD H R R +S+HA LYTEM+ +I+ G+ +RFL +S
Sbjct: 68 RLALSRRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIH--GDRERFLRYSEC 125
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HPI LQ+GGSN +LA ++A + YDE+NLN GCPS +V + G LM P V
Sbjct: 126 EHPIALQLGGSNPQDLATCAKMAEEHGYDEVNLNVGCPSDRVQNN-MIGACLMGHPALVA 184
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + N+PV+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+S
Sbjct: 185 DCVKAMQDAVNIPVTVKHRIGINGRDSYAELCDFVGQVRD-AGCRSFTVHARIAILEGLS 243
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+Y+ L +DFPDL LNGGI T++E L+ VM+GR AY NP
Sbjct: 244 PKENREIPPLRYDVAAQLKQDFPDLEIILNGGIKTLEECEQHLQT-FDGVMLGREAYHNP 302
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L VD+ ++GA +G+TR + + Y + L G + V + +L
Sbjct: 303 -YLLAQVDSRLFGAADAGITRMDALLALKPYVEQHLREGGT----LHHVSRHVLGLAQGF 357
Query: 304 PGNGLFKR 311
PG F++
Sbjct: 358 PGARRFRQ 365
>gi|456877498|gb|EMF92516.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. ST188]
Length = 350
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 186/300 (62%), Gaps = 8/300 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 21 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 78
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM +P+ V E + +
Sbjct: 79 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKNPERVAELVFAMDT 137
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 138 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 196
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FP+L +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 197 PLRYADVEALKREFPNLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 254
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+R +V+ + + Y + ++ N +PH ++ +L FH G F+R
Sbjct: 255 SLFFNDDSPSLSRGEVLLRMRDYVEEVVLKEKNGKPH--HALRHILGLFHGVKGARSFRR 312
>gi|333929381|ref|YP_004502960.1| yjbN family TIM-barrel protein [Serratia sp. AS12]
gi|333934334|ref|YP_004507912.1| hypothetical protein SerAS9_4557 [Serratia plymuthica AS9]
gi|386331204|ref|YP_006027374.1| yjbN family TIM-barrel protein [Serratia sp. AS13]
gi|333475941|gb|AEF47651.1| TIM-barrel protein, yjbN family [Serratia plymuthica AS9]
gi|333493441|gb|AEF52603.1| TIM-barrel protein, yjbN family [Serratia sp. AS12]
gi|333963537|gb|AEG30310.1| TIM-barrel protein, yjbN family [Serratia sp. AS13]
Length = 336
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 179/309 (57%), Gaps = 10/309 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S
Sbjct: 7 ASKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAYSE 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V
Sbjct: 64 EEHPVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG+DD DSY LCDFI V+ F +H+RKA L+G+
Sbjct: 123 ADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTVHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP LT +NGG+ T++E L VM+GR AYQN
Sbjct: 183 SPKENREVPPLDYPRVYQLKRDFPQLTLAINGGVKTLEEAKQHLEH-LDGVMMGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P L +D+ ++G + + ++E Y + L +N ++ + + +L F
Sbjct: 242 PG-ILARIDSELFGRQTEVMDSVAIIESLYPYIEREL----SNGTYLGHITRHILGLFQG 296
Query: 303 EPGNGLFKR 311
PG ++R
Sbjct: 297 VPGARQWRR 305
>gi|421264167|ref|ZP_15715172.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688632|gb|EJS84195.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 327
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLRMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|421785829|ref|ZP_16222252.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
gi|407752018|gb|EKF62178.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
Length = 336
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 178/309 (57%), Gaps = 10/309 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A +Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S
Sbjct: 7 ASKYAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAYSE 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V
Sbjct: 64 EEHPVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+
Sbjct: 123 ADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDFP LT +NGG+ T+ E L VM+GR AYQN
Sbjct: 183 SPKENREVPPLDYPRVYQLKRDFPQLTLAINGGVKTLGEAKQHLEH-LDGVMMGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P L VD+ ++G + + ++E Y + L +N ++ + + +L F
Sbjct: 242 PG-ILARVDSELFGRQTEVMDSVAIIESLYPYIEREL----SNGTYLGHITRHILGLFQG 296
Query: 303 EPGNGLFKR 311
PG ++R
Sbjct: 297 VPGARQWRR 305
>gi|15603283|ref|NP_246357.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Pm70]
gi|38605041|sp|Q9CL29.1|DUSA_PASMU RecName: Full=tRNA-dihydrouridine synthase A
gi|12721794|gb|AAK03502.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 327
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|386855677|ref|YP_006259854.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
gi|379999206|gb|AFD24396.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
Length = 335
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 187/334 (55%), Gaps = 11/334 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H RT R +++ LYTEM+ +++ G+ +R L F +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRTFHRTLTRRTLLYTEMVTTGAVLH--GDRERHLGFGVVEHPLALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +A Y YDE+NLNCGCPS +V G FG LM P V A + T++
Sbjct: 59 PAALAECARMAEDYGYDEVNLNCGCPSDRVQS-GAFGACLMATPDVVARAAEAMRHATSL 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L F+ V+ S FI+H+RKA L+G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDDLDSYGHLAHFVGTVAQ-SGVTTFIVHARKAWLSGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L +FP LT LNGGI ++D AL A M+GRAAYQ+P + L D ++
Sbjct: 177 DVVQRLKAEFPHLTVVLNGGILSLDAAQDAL-AWADGAMIGRAAYQDP-FLLAAADRDLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G ++ +TRR+ E Y Y + +P R +MK L F +PG +KR
Sbjct: 235 GEAATPVTRREATEAYLPY---VAAQLAQGQPLNR-MMKHTLGLFAGQPGARHWKRTISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLDSPI-EEAPR 348
+E + +PD VLD+ E AP+
Sbjct: 291 QGHRPGAGLEVVEAALAGVPDEVLDARAGETAPQ 324
>gi|440232766|ref|YP_007346559.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
gi|440054471|gb|AGB84374.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
Length = 348
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+SK LYTEM+ II+ +G+ +LA+S ++HP+ LQ
Sbjct: 27 FSIAPMLDWTDRHCRYFHRLLSKETLLYTEMVTTGAIIHGKGD---YLAYSEQEHPLALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V + + +
Sbjct: 84 LGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQAALVADCIKAMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR +
Sbjct: 143 DAVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREV 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ ++ E L+ VM+GR AYQNP L V
Sbjct: 203 PPLDYPRVYQLKRDFPALTIAINGGVKSLAEAQQHLQH-VDGVMMGREAYQNPG-ILAQV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ ++ +VVE Y + L N ++ + + +L F PG ++
Sbjct: 261 DRELFGSQAAVRNSVEVVEALYPYIERELA----NGTYLGHITRHILGLFQGIPGARQWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|374620237|ref|ZP_09692771.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
gi|374303464|gb|EHQ57648.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
Length = 329
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 188/329 (57%), Gaps = 26/329 (7%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R RL+S+H +YTEM+ +I+ G+ DR L F+ E+HP+ LQ+GGS+
Sbjct: 1 MDWTDRHCRYFWRLMSRHTRVYTEMVTTGALIH--GDADRHLRFNEEEHPVALQLGGSSP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
+LA + + Y YDEINLNCGCPS +V +G FG LM + + V + +S + ++P
Sbjct: 59 KDLAVSARMGADYGYDEINLNCGCPSDRVQ-NGAFGACLMREAELVRDCVSAMNEAVDIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK R+G+DD +SY+ + DF+ V+ ++ FI H+R A L G+SP ENR +PPLKYE
Sbjct: 118 VTVKHRLGIDDDNSYDIVRDFVGTVAE-GGSQVFIAHARNAWLKGLSPKENREVPPLKYE 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTAI 254
+ Y L RDFPDLT +NGGI T++E A L AH VM+GR YQNPW+ L VD +
Sbjct: 177 WVYQLKRDFPDLTIVINGGITTLEECQAHL---AHVDGVMLGREPYQNPWF-LSAVDELL 232
Query: 255 YGAPSSG------------LTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
+ +G L+RR E Y + +L G + V++ +L +
Sbjct: 233 FQETPTGDKSNTLKQSSSPLSRRATAEALMPYLEKVLSEGGR----LNHVLRHVLGLYQR 288
Query: 303 EPGNGLFKRKADAAFQTCKTVKSFLEETI 331
+PG F+R + E+ I
Sbjct: 289 QPGGKQFRRILSEGMHSEGAGIELFEQAI 317
>gi|83645166|ref|YP_433601.1| tRNA-dihydrouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633209|gb|ABC29176.1| tRNA-dihydrouridine synthase [Hahella chejuensis KCTC 2396]
Length = 349
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 182/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD HYR LARL+S+H +LYTEM+ II+ G+ +RFL F+ E+HPI +Q
Sbjct: 20 FSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIH--GDRNRFLDFNAEEHPIAVQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D L + ++ + YDEINLN GCPS +V + G LM P+ V E ++ +
Sbjct: 78 LGGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNN-MIGACLMGYPERVAECVAAMC 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DS L +F+ V + + FIIH+RKA+L G+SP ENR I
Sbjct: 137 SAVSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAGCST-FIIHARKAILKGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + + FP+L +NGGI T+DE + L++ VM+GR AYQ PW L V
Sbjct: 196 PPLIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQE-VDGVMIGREAYQRPW-MLADV 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ P + + ++ Y I Y N V + + L FH + G F+
Sbjct: 254 DHRLFHCPPPSFSATDIGYQFLEY---IERNYQNGVA-VWHMARHALGLFHGQKGGKQFR 309
Query: 311 R 311
R
Sbjct: 310 R 310
>gi|392543378|ref|ZP_10290515.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas piscicida JCM
20779]
Length = 339
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 190/332 (57%), Gaps = 30/332 (9%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KHA LYTEM+ II+ +G+ +LAF + P+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGD---YLAFGAHELPVALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ + A Y Y E+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 81 LGGSDPKALAECAKRAEQYGYSEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ DSY L I + S FIIH+RKA L G+SP ENR I
Sbjct: 140 AEVDIPVTVKTRIGIDEQDSYEFLTALI-ETSQAVGCDDFIIHARKAWLQGLSPKENREI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQNPW 244
PPL Y Y L +D+PDL ++NGG+ T++E HH VMVGR AY NP
Sbjct: 199 PPLDYPRVYQLKKDYPDLHISINGGVKTLEECQ-------HHLVHLDGVMVGREAYSNP- 250
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
+ L VD +YG + TR QV+ Y ++ + G N H + + +L F ++P
Sbjct: 251 FMLSQVDELLYGEAAFTQTRHQVIRSMYDYFESEMSN-GANFWH---IARHMLGIFQNQP 306
Query: 305 GNGLFKR-------KADAAFQTCKTVKSFLEE 329
G F+R K +A + + SF+ E
Sbjct: 307 GARGFRRHLSENGHKKEAGIEVMEKALSFVPE 338
>gi|376002407|ref|ZP_09780241.1| tRNA-dihydrouridine synthase A [Arthrospira sp. PCC 8005]
gi|375329216|emb|CCE15994.1| tRNA-dihydrouridine synthase A [Arthrospira sp. PCC 8005]
Length = 334
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II G+ + L FSPE+ P+ LQ
Sbjct: 20 LSIAPMMDRTDRHFRYFMRQITRRPLLYTEMVTSAAII--NGDRHKLLDFSPEEKPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + + LA ++A + YDEINLN GCPS +V +G FG LM +P+ V EA+S +
Sbjct: 78 VGGDDPNELATCAKIAEDWGYDEINLNVGCPSARVQ-NGNFGACLMAEPERVAEAISAMK 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + F+ +V + S + F +H+RKA L G+SP +NR I
Sbjct: 137 KAVNIPVTVKHRIGIDNRDRYEDMAAFV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +FPDLT +NGG T+++V L K VM+GRAAY NP Y
Sbjct: 196 PPLRYGDVHRLKAEFPDLTIEINGGFTTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIA 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR QVVE+ Y + L G + V++ +L F +PG +K
Sbjct: 254 DREIYGENINPPTRHQVVEQMLPYIENWLSQGG----RLNSVVRHILQLFAGQPGTKAWK 309
Query: 311 R 311
R
Sbjct: 310 R 310
>gi|308125855|ref|ZP_07663540.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|433658796|ref|YP_007276175.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|308113305|gb|EFO50845.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|432509484|gb|AGB11001.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 315
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 188/323 (58%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + +V
Sbjct: 58 PEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDV 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F + PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|389839414|ref|YP_006341498.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
gi|387849890|gb|AFJ97987.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
Length = 331
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 176/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDIFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G VV Y G+ GTY + V + +L F PG
Sbjct: 248 DREIFGFNVPDADPVAVVRAMYPYIEGELAKGTY------LGHVTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|424811155|ref|ZP_18236471.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
gi|342321786|gb|EGU17587.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
Length = 316
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + + ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ T++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|425078874|ref|ZP_18481977.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425089506|ref|ZP_18492599.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425094197|ref|ZP_18497280.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|405589675|gb|EKB63240.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405599947|gb|EKB73122.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610070|gb|EKB82895.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
Length = 313
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 174/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI ++DE L VMVGR AYQNP L VD I+
Sbjct: 177 PRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|113971575|ref|YP_735368.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-4]
gi|113886259|gb|ABI40311.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-4]
Length = 335
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 191/330 (57%), Gaps = 18/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+D TD HYR ARL+S +A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 16 FSIAPMLDLTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLAYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTYFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPMLNISINGGITSLEQAKTHLQY-LDGVMVGREAYQNP-YILAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQLLCGCEKAVISREAVIEAMLPYIEAHLQAGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R K A + K ++ I+A
Sbjct: 305 RYLSENAHKNGAGIEVVKQAYQSIQSEIIA 334
>gi|253689857|ref|YP_003019047.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756435|gb|ACT14511.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 340
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 182/308 (59%), Gaps = 24/308 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLSSQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEASLVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LCDFI V+ L FI+H+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYAFLCDFIQTVAELGECETFIVHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYGAPS-----SGLTRRQ--VVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
D ++G + +G+ R +E+ ++ G A LG + + +L F
Sbjct: 258 DRELFGIDAATPDLAGVVRTMYPYIER-ELSGGAALG----------HITRHMLGMFQGI 306
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 307 PGARQWRR 314
>gi|188535214|ref|YP_001909011.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
gi|188030256|emb|CAO98143.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
Length = 332
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 190/339 (56%), Gaps = 22/339 (6%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
+ LP + FS+APM+DWTD H R R +++ LYTEM+ II+ +G+ +LAFS E
Sbjct: 4 EKLPAYRFSIAPMLDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGD---YLAFSRE 60
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ LA+ +LA Y EINLN GCPS +V +G FG LM + + V
Sbjct: 61 EQPVALQLGGSDPAALAQCAKLAEQRGYQEINLNVGCPSDRVQ-NGRFGACLMGEARLVA 119
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + T++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+S
Sbjct: 120 DGIKAMRDVTSLPVTVKTRIGIDDQDSYAFLCDFIRTVSEQGGCEMFIIHARKAWLSGLS 179
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL Y Y L RDFP LT +LNGG+ T++E L+ VM+GR AYQNP
Sbjct: 180 PKENREIPPLDYPRVYQLKRDFPHLTLSLNGGVKTLEEAKVHLQH-LDGVMMGREAYQNP 238
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFH 301
L VD ++G VV Y + L GTY + V + +L F
Sbjct: 239 GL-LAQVDRELFGCTLPDTDPVAVVRSMYPYIERELAKGTY------LGHVTRHMLGLFQ 291
Query: 302 SEPGNGLFKR-------KADAAFQTCKTVKSFLEETIVA 333
PG ++R KA A + + S + + + A
Sbjct: 292 GVPGARQWRRYLSENAHKAGAGVEVVEKALSLVADKVTA 330
>gi|421112110|ref|ZP_15572574.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
gi|410802519|gb|EKS08673.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
Length = 344
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 185/300 (61%), Gaps = 8/300 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 15 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 72
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 73 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDT 131
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 132 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 190
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FP+L +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 191 PLRYADVEALKREFPNLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 248
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ + S L+R +V+ + + Y + ++ N +PH ++ +L FH G F+R
Sbjct: 249 SLFFNDDSPSLSRGEVLLRMRDYVEEVVLKEKNGKPH--HALRHILGLFHGVKGARSFRR 306
>gi|296136585|ref|YP_003643827.1| yjbN family TIM-barrel protein [Thiomonas intermedia K12]
gi|295796707|gb|ADG31497.1| TIM-barrel protein, yjbN family [Thiomonas intermedia K12]
Length = 349
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 183/303 (60%), Gaps = 11/303 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H R RLI++ A LYTEM+ ++Y G++ R L +S +HP+ LQ
Sbjct: 5 LSIAPMLDWTDRHCRYFHRLITQRALLYTEMVTTGALLY--GDVARHLDYSSHEHPVALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI- 129
+GGS +LA+ +LA + YDEINLNCGCPSP+V G FG LM +P V ++++ +
Sbjct: 63 LGGSEPVDLARCAKLALEWGYDEINLNCGCPSPRVQ-RGAFGACLMAEPSRVRDSVAAMV 121
Query: 130 -AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
A + +PV+VK RIGVD DSY + DF+ VS FI+H+R A L+G+SP ENR
Sbjct: 122 EAVSGTIPVTVKHRIGVDHEDSYGFVRDFVGTVSQ-GGCETFIVHARSAWLDGLSPKENR 180
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
IPPL+ E+ L RDFP L F LNGGI T ++ L + VMVGRAAYQ+PW +L
Sbjct: 181 DIPPLRPEFILQLRRDFPALAFVLNGGIKTEQQIREWLPQ-VSGVMVGRAAYQDPW-SLS 238
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D G+ S R++VE+ A + + H + + + +L+ + +PG
Sbjct: 239 TWDREFLGSADSAAPEREIVEEQM---GAYIAAWKVKGLHPQAITRHMLNLWKGQPGGRR 295
Query: 309 FKR 311
+++
Sbjct: 296 WRQ 298
>gi|126461351|ref|YP_001042465.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
gi|126103015|gb|ABN75693.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17029]
Length = 331
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 175/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+++ A LYTEM+ A +I+ G DR L FS +HP+ LQ
Sbjct: 14 LSVAPMLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GPRDRLLGFSEAEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A LA Y YDEINLN GCPS +V GCFG LM P V + ++ +
Sbjct: 72 LGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQS-GCFGAVLMERPSLVADCVAAMI 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + VPV+VKCRIGVD+ + L F+ V++ + RHF+IH+RKA L G+SP ENR I
Sbjct: 131 AESPVPVTVKCRIGVDEQEPSEVLPAFLETVAA-AGVRHFVIHARKAWLQGLSPRENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y A+ R FP+LT LNGG+ ++ + A L +G +M+GRAAY P L
Sbjct: 190 PPLDYPLVIAMKRRFPELTICLNGGVGSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EA 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D P L V+ + Y A L G R H + + +L F PG ++
Sbjct: 249 DRLWGEEPPRDLA--AVLADMRPYISAHL--EGGGRLH--QITRHMLGLFAGRPGARHWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>gi|365143210|ref|ZP_09348141.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
gi|363649755|gb|EHL88857.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
Length = 313
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 174/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + + ++
Sbjct: 58 PQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI ++DE A L VMVGR AYQNP L VD I+
Sbjct: 177 PRVWQLKRDFPHLTMAINGGIKSLDEARAQLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|419828953|ref|ZP_14352443.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|419831734|ref|ZP_14355202.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|422916116|ref|ZP_16950458.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|423815746|ref|ZP_17715063.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|423847825|ref|ZP_17718849.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|423878717|ref|ZP_17722456.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|423996536|ref|ZP_17739803.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|424015234|ref|ZP_17755085.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|424018349|ref|ZP_17758152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|424623722|ref|ZP_18062203.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|424628297|ref|ZP_18066607.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|424632249|ref|ZP_18070370.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|424635338|ref|ZP_18073363.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|424639130|ref|ZP_18077031.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|424647413|ref|ZP_18085094.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|443526268|ref|ZP_21092355.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
gi|341641086|gb|EGS65654.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|408016438|gb|EKG53985.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|408021790|gb|EKG59026.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|408027801|gb|EKG64749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|408027886|gb|EKG64829.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|408037524|gb|EKG73915.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|408059398|gb|EKG94163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|408622550|gb|EKK95533.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|408636924|gb|EKL09041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|408644304|gb|EKL16001.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|408645429|gb|EKL17082.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|408652383|gb|EKL23603.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|408854854|gb|EKL94598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|408862210|gb|EKM01749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|408870656|gb|EKM09931.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|443455386|gb|ELT19166.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
Length = 316
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 181/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++
Sbjct: 58 PNDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|383311265|ref|YP_005364075.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835284|ref|YP_006240601.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872537|gb|AFF24904.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201987|gb|AFI46842.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
Length = 327
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLHMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|421350237|ref|ZP_15800604.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
gi|395954959|gb|EJH65565.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
Length = 316
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|300724718|ref|YP_003714043.1| tRNA -dihydrouridine synthase A [Xenorhabdus nematophila ATCC
19061]
gi|297631260|emb|CBJ91955.1| tRNA-dihydrouridine synthase A [Xenorhabdus nematophila ATCC 19061]
Length = 342
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SK A LYTEM+ II+ +G+ +LA++ ++HP+ LQ
Sbjct: 25 FSVAPMLDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGD---YLAYNEQEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+ +A YDEINLN GCPS +V +G FG LM D V + + +
Sbjct: 82 LGGSEPQALAQCARIAQEKGYDEINLNVGCPSDRVQ-NGRFGACLMGDAALVADCVKAMQ 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI V S +F+IH+RKA L+G+SP ENR I
Sbjct: 141 DVVDIPVTVKTRIGIDEQDSYEFLCDFIETVVKNSDCDNFVIHARKAWLSGLSPKENREI 200
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L DFP LTF++NGGI +++E L+ VM+GR AYQNP L HV
Sbjct: 201 PPLDYPRVYQLKNDFPQLTFSINGGIKSLEEAKQHLQY-VDGVMIGREAYQNP-SMLAHV 258
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ S + V+ Y + L GTY + + + +L F PG
Sbjct: 259 DRELFNQTSPVTNTVEAVQALYPYIEQELSKGTY------LGHITRHILGIFQGIPGARQ 312
Query: 309 FKR 311
++R
Sbjct: 313 WRR 315
>gi|423067892|ref|ZP_17056682.1| TIM-barrel protein yjbN family [Arthrospira platensis C1]
gi|406710635|gb|EKD05842.1| TIM-barrel protein yjbN family [Arthrospira platensis C1]
Length = 338
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II G+ + L FSP++ P+ LQ
Sbjct: 24 LSIAPMMDRTDRHFRYFMRQITRRPLLYTEMVTSAAII--NGDRHKLLDFSPQEKPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + D LA ++A + YDEINLN GCPS +V +G FG LM +P+ V +A+S +
Sbjct: 82 VGGDDPDELATCAKIAEDWGYDEINLNVGCPSARVQ-NGNFGACLMAEPERVAQAISAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + F+ +V + S + F +H+RKA L G+SP +NR I
Sbjct: 141 KAVNIPVTVKHRIGIDNRDRYEDMAAFV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +FPDLT +NGG T+++V L K VM+GRAAY NP Y
Sbjct: 200 PPLRYGDVHRLKAEFPDLTIEINGGFTTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIA 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR QVVE+ Y + L G + V++ +L F +PG +K
Sbjct: 258 DREIYGENINPPTRHQVVEQMLPYIENWLSQGG----RLNSVVRHILQLFAGQPGTKAWK 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|417792931|ref|ZP_12440235.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|429117008|ref|ZP_19177926.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449306619|ref|YP_007438975.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
gi|333952990|gb|EGL70988.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|426320137|emb|CCK04039.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449096652|gb|AGE84686.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
Length = 331
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 176/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAERGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G VV Y + L GTY + V + +L F PG
Sbjct: 248 DREIFGLDVPDADPVAVVRAMYPYIERELAKGTYLGH------VTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|384919931|ref|ZP_10019957.1| tRNA-dihydrouridine synthase A [Citreicella sp. 357]
gi|384466192|gb|EIE50711.1| tRNA-dihydrouridine synthase A [Citreicella sp. 357]
Length = 343
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 180/327 (55%), Gaps = 15/327 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L R +S LY+EM+ A ++ +G LAFS ++HP+ LQ
Sbjct: 24 LSVAPMMDWTDRHCRYLHRQLSSQTLLYSEMVTAPALV--RGGAVHLLAFSAQEHPVALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS++D LA+A L YD+I+LNCGCPS +V G FG LM P V + ++ +
Sbjct: 82 LGGSDVDELAQAARLGEQAGYDQIDLNCGCPSDRVQ-SGAFGAVLMQSPGLVADCVAAMR 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
NV V+VKCRIGVD+ + L F+ +S+ R +IH+RKA L G+SP ENR +
Sbjct: 141 EAVNVEVTVKCRIGVDEQEPREALPAFLEAISNAGCGR-VVIHARKAWLKGLSPKENRDV 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + RDFPDL ++NGGI ++D A L +G VM+GR+AY PW L
Sbjct: 200 PPLDYALVTEMKRDFPDLHISINGGIASLDAAQALLAQGLDGVMIGRSAYHQPWDILADA 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + ++ V + Y + L G + V + +L F PG ++
Sbjct: 260 DRRIFGLERAPISPETAVRRMLPYIENHLTQGG----RLNQVTRHMLGLFAGRPGARSWR 315
Query: 311 R-------KADAAFQTCKTVKSFLEET 330
R + A +T + +F+ E
Sbjct: 316 RLLSEEASRDGAGLETIERGLAFISEA 342
>gi|340788618|ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
gi|340553885|gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
Length = 338
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 182/303 (60%), Gaps = 9/303 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R R I++H WLYTEM+ +++ G++ R L FS +HP+ LQ+
Sbjct: 14 SVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFSDVEHPVALQL 71
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS +LAK+ +L + YDEINLNCGCPS +V G FG LM + + V + + +
Sbjct: 72 GGSESADLAKSAKLGQEWGYDEINLNCGCPSERVQ-KGAFGACLMAEAELVADCVKAMRD 130
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
++ V+VK RIG+D +SY + DF+ V+ + + FI+H+R A+L G+SP ENR IP
Sbjct: 131 AVSIDVTVKHRIGIDKTESYEFVRDFVGTVAQ-AGCQTFIVHARNAILKGLSPKENREIP 189
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PLKYEY Y L RDFP+L +NG I T +E++ L+ VM+GR AY NP Y + D
Sbjct: 190 PLKYEYAYQLARDFPELEIIINGAIKTTEEIDFHLQY-VDGVMLGREAYHNP-YLMADFD 247
Query: 252 TAIYGAPSSG-LTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
+ YGA + TR +V+E Y L +G++ +R + + +L PG
Sbjct: 248 SRYYGAADAAPKTRAEVIEAMLPYIRQQLALHGHDGKGLRLNSITRHMLGLMAGVPGAKS 307
Query: 309 FKR 311
F++
Sbjct: 308 FRQ 310
>gi|429118938|ref|ZP_19179683.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
gi|426326596|emb|CCK10420.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
Length = 331
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 176/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPKLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G VV Y + L GTY + V + +L F PG
Sbjct: 248 DREIFGLDVPDTDPVAVVRAMYPYIERELAKGTY------LGHVTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|443321686|ref|ZP_21050730.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
gi|442788598|gb|ELR98287.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
Length = 325
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 175/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMD TD H+R RLI++H LYTEM+ IIY G+ +FL F + P+ LQ+GG N
Sbjct: 1 MMDRTDRHFRYFIRLITRHTLLYTEMITTGAIIY--GDRSKFLGFDLAEKPLSLQLGGDN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+ LA +A + YDE+NLN GCPSP+V G FG LML+P V A+ + +
Sbjct: 59 PEQLAACARIAQDWGYDEVNLNVGCPSPRVQS-GNFGACLMLNPSLVATAVEKMTKAVTI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVDD D Y L F+ V+ +R F +H+RKA L G+SP ENR+IPPL+Y
Sbjct: 118 PVTVKHRIGVDDRDRYEDLTQFVQTVAEAGCSR-FTVHARKAWLKGLSPKENRSIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ + L RDFP L +NGGI + E+ L + VM+GRAAY +P++ L VD IY
Sbjct: 177 DLVHRLKRDFPHLYIEINGGITKLSEIQEQL-ELVDAVMIGRAAYDHPYF-LATVDREIY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
GA TR ++V + Y + L N+ + + + LLH F EPG+ +KR
Sbjct: 235 GAQYKPPTRPEIVAQMLPYIENCL----NSGFSLNSISRHLLHLFTGEPGSRAWKR 286
>gi|290476894|ref|YP_003469805.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
gi|289176238|emb|CBJ83043.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
Length = 345
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 183/311 (58%), Gaps = 14/311 (4%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A ++ FSVAPM+DWTD H R RL+SK A LYTEM+ II+ +GN +L ++
Sbjct: 20 AGKFKSSRFSVAPMLDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGN---YLTYNE 76
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS LA+ ++A YDEINLN GCPS +V +G FG LM + K V
Sbjct: 77 EEHPLALQLGGSEPQALAQCAKIAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAKLV 135
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG+D+ DSY LCDFI V S +FIIH+RKA L+G+
Sbjct: 136 ADGIKAMQDVVDIPVTVKTRIGIDEQDSYEFLCDFIDTVVKNSDCDNFIIHARKAWLSGL 195
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL Y Y L +DFP LT ++NGGI +++E L+ VM+GR AYQN
Sbjct: 196 SPKENREIPPLDYPRVYQLKKDFPQLTLSINGGIKSLEEAKQHLQY-VDGVMIGREAYQN 254
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFF 300
P L HVD ++ + + ++ Y + L GTY + + + +L F
Sbjct: 255 P-SILAHVDRELFNETALVVNTINAIKALYPYIERELSKGTY------LGHITRHILGIF 307
Query: 301 HSEPGNGLFKR 311
PG ++R
Sbjct: 308 QGIPGARQWRR 318
>gi|260773671|ref|ZP_05882587.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
gi|260612810|gb|EEX38013.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
Length = 335
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++ LYTEM+ II+ +G+ FL ++ E+HP+ LQ
Sbjct: 15 LSVAPMLDWTDRHCRYFHRLLTSQTLLYTEMVTTGAIIHGKGD---FLTYNQEEHPVSLQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 72 LGGSNPTDLAHCAKLAQDRGYDEINLNVGCPSDRVQ-NGKFGACLMAEPQLVADCVAAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP ENR I
Sbjct: 131 EVVDIPVTVKTRIGIDDQDSYEFLTRFVQLVSEQGGCEQFTIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT +NGG+ ++ EV L+ VMVGR AYQNP Y L
Sbjct: 191 PPLDYPRAYQLKQDFPHLTIAINGGVKSLTEVLDHLQH-LDGVMVGREAYQNP-YLLAEA 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G R QVV++ Y + L T G H + + +L F S PG ++
Sbjct: 249 DQQIFGLDKPIKKRSQVVQEMYPYIEQQL-TQGAYLGH---ITRHMLGLFQSMPGARQWR 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|397166048|ref|ZP_10489494.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
gi|396092210|gb|EJI89774.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
Length = 339
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 157/246 (63%), Gaps = 6/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 79 LGGSDPAQLAHCAKLAQARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+SP ENR I
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCDFIGTVAGKGECESFTIHARKAWLSGLSPKENREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L +NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPHLKMAINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 255
Query: 251 DTAIYG 256
D IYG
Sbjct: 256 DREIYG 261
>gi|307249353|ref|ZP_07531347.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858647|gb|EFM90709.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 329
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 191/337 (56%), Gaps = 19/337 (5%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L +
Sbjct: 4 LMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P ++P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM
Sbjct: 61 DPSENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKAD 119
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + +PV+VK RIG+DD DSY LCDFI KV S +FI+H+RKA L+
Sbjct: 120 LVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NNFIVHARKAWLS 177
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP +NR IPPL YE Y L RDFP L ++NGGI TV+E+ L VMVGR AY
Sbjct: 178 GLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGIKTVEEIKRHL-AFVDGVMVGREAY 236
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNP LG +D+ I+G +T R+ VEK Y + T ++ +++ +L F
Sbjct: 237 QNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY----IETQTKKGVYLNHIVRHMLGAF 291
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
+ G ++R K A + + SF++E+
Sbjct: 292 QNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 328
>gi|429106337|ref|ZP_19168206.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
gi|426293060|emb|CCJ94319.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
Length = 331
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 175/303 (57%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVRAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G VV Y G+ GTY + V + +L F PG
Sbjct: 248 DREIFGLDVPDADPVAVVRAMYPYIEGELAKGTY------LGHVTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|16125555|ref|NP_420119.1| tRNA-dihydrouridine synthase A [Caulobacter crescentus CB15]
gi|221234301|ref|YP_002516737.1| tRNA-dihydrouridine synthase A [Caulobacter crescentus NA1000]
gi|13422645|gb|AAK23287.1| TIM-barrel protein, yjbN family [Caulobacter crescentus CB15]
gi|220963473|gb|ACL94829.1| NIFR3-like protein [Caulobacter crescentus NA1000]
Length = 341
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 192/348 (55%), Gaps = 18/348 (5%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y FSVAPMMDWTD H R+L R +S A LYTEM+ + +++ G+ ++ L + P Q
Sbjct: 6 KYQAHRFSVAPMMDWTDRHCRSLHRGLSSRALLYTEMVTSGAVVH--GDRNKLLGYDPGQ 63
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ +Q+GGS+ LA+A +A Y YDE+NLN GCPS +V G FG LM +P V E
Sbjct: 64 HPVAVQLGGSDPAELAQAARIAEDYGYDEVNLNVGCPSDRVQS-GRFGACLMREPDLVAE 122
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
M+ I VP +VKCRIGVDD D L + + ++ + F++H+RKA L G+SP
Sbjct: 123 CMAAIKNAVRVPATVKCRIGVDDQDPEESLFTLVDRCAA-AGIDTFVVHARKAWLQGLSP 181
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y Y L R+ P LT +NGG+ +VD L G VM+GRAAY
Sbjct: 182 KENRDIPPLDYALVYRLKRERPALTIAINGGVPSVDAALEHLANGVDGVMLGRAAYHEAG 241
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LG VD ++G + + + VE+Y+ Y L H+ + + +L FH P
Sbjct: 242 L-LGEVDRRVFGLDVADVDSFEAVERYRPY----LARELAAGTHLAAMSRHMLGLFHGLP 296
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGRED 352
G ++R T + VKS +V D LD+ + A RE+
Sbjct: 297 GARAWRR-----ILTVEGVKSGAGLDVV---DRALDA-VRAALASREE 335
>gi|429111836|ref|ZP_19173606.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
gi|426312993|emb|CCJ99719.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
Length = 331
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 176/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S ++HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEQEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVRAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G VV Y G+ GTY + V + +L F PG
Sbjct: 248 DREIFGLDVPDADPVAVVRAMYPYIEGELAKGTY------LGHVTRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>gi|417766628|ref|ZP_12414579.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417776049|ref|ZP_12423893.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000621]
gi|417786517|ref|ZP_12434207.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. C10069]
gi|418666669|ref|ZP_13228088.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672075|ref|ZP_13233417.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000623]
gi|418688681|ref|ZP_13249825.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
FPW2026]
gi|418697820|ref|ZP_13258806.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H1]
gi|418700425|ref|ZP_13261367.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421086555|ref|ZP_15547404.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. HAI1594]
gi|421101115|ref|ZP_15561729.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421121032|ref|ZP_15581333.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. Brem
329]
gi|400351023|gb|EJP03271.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400362181|gb|EJP18125.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
FPW2026]
gi|409950139|gb|EKO04668.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. C10069]
gi|409954429|gb|EKO13384.1| tRNA dihydrouridine synthase A [Leptospira kirschneri str. H1]
gi|410346021|gb|EKO97053.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. Brem
329]
gi|410368911|gb|EKP24285.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431054|gb|EKP75416.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. HAI1594]
gi|410574253|gb|EKQ37291.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000621]
gi|410580679|gb|EKQ48498.1| tRNA dihydrouridine synthase A [Leptospira interrogans str.
2002000623]
gi|410757450|gb|EKR19061.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410760326|gb|EKR26522.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Bataviae str. L1111]
gi|455789882|gb|EMF41785.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456822808|gb|EMF71278.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 329
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 190/325 (58%), Gaps = 9/325 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H+R RLISKH +LYTEM+ +++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MMDWTDRHFRYFLRLISKHTFLYTEMVHTGAVLH--GDRRKLLSYSPEELPLAIQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++
Sbjct: 59 PKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +PPL Y
Sbjct: 118 PITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +
Sbjct: 177 TYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 GENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTE 292
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 GMYSGYS-KDLLSKAIQEISNDSLD 316
>gi|429088299|ref|ZP_19151031.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
gi|426508102|emb|CCK16143.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
Length = 331
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/246 (49%), Positives = 158/246 (64%), Gaps = 6/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSDEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDE+NLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T+D+V A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPKLTMSINGGIKTLDDVKAHLEH-MDGVMVGREAYQNPGL-LASV 247
Query: 251 DTAIYG 256
D I+G
Sbjct: 248 DREIFG 253
>gi|453063437|gb|EMF04416.1| tRNA-dihydrouridine synthase A [Serratia marcescens VGH107]
Length = 336
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 179/306 (58%), Gaps = 10/306 (3%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 YAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V +
Sbjct: 67 PVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+SP
Sbjct: 126 IKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP
Sbjct: 186 ENREVPPLDYPRAYQLKRDFPALTIAINGGVKTLEEAQQHLQH-LDGVMMGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD+ ++GA ++ +VE Y + L +N ++ + + +L F PG
Sbjct: 244 ILARVDSELFGAQTAVPDSVAIVEALYPYIEREL----SNGTYLGHITRHILGLFQGVPG 299
Query: 306 NGLFKR 311
++R
Sbjct: 300 ARQWRR 305
>gi|149190495|ref|ZP_01868765.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
gi|148835619|gb|EDL52586.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
Length = 315
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 182/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGD---FLAYNEEEHPVALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ + +V
Sbjct: 58 PADLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAECVAAMKEVVDV 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L F+ VS + F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTRFVSLVSEKAGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + +DFP L +NGG+ T++E L K VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKKDFPHLQIAVNGGVKTLEESLEHL-KHLDGVMIGREAYQNP-YILAQVDQLIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R+QVVE+ Y + L N ++ + + ++ F + PG ++R
Sbjct: 235 GLDTPVKKRKQVVEEMYPYIERQLA----NGSYLGHISRHMIGLFQAMPGARQWRRYISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
LE + IP
Sbjct: 291 NAHKKGAGIEVLETALAKIP 310
>gi|254786572|ref|YP_003074001.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
gi|237683391|gb|ACR10655.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
Length = 338
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 184/302 (60%), Gaps = 10/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APMM+W+D H R RL++K+A LYTEM+ ++ +++RFL F+ E+HP+ LQ
Sbjct: 14 FSIAPMMEWSDRHCRYFWRLLTKNALLYTEMVTTGALL-NNSDVERFLKFNSEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D LA+ +A + YDE+NLNCGCPS +V G G LM +P+ V + +S +
Sbjct: 73 LGGSNPDELARCAAMAQQWGYDEVNLNCGCPSDRVQ-EGKIGAVLMTEPELVAQCVSAMQ 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIGVDD D YN L F+ KV S + + FI+H+RKA L G+SP ENR I
Sbjct: 132 AECDIPVTVKHRIGVDDQDEYNDLQRFV-KVVSEAGCKRFIVHARKAWLKGLSPKENRDI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE L ++ L +NGGI T+ + +A L + VM+GR AY NP Y L V
Sbjct: 191 PPLNYERVVQLKQEHTALDIVINGGITTLSQCSALLSQ-LDGVMIGREAYHNP-YLLAGV 248
Query: 251 DTAIYGAPS-SGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D +YG+ + +TR +E++ +Y + G H+ + +L + E G F
Sbjct: 249 DAELYGSDNIPPVTRDAALEQFVVYCREQIAA-GQKLHHMS---RHILGLYAGEYGARTF 304
Query: 310 KR 311
+R
Sbjct: 305 RR 306
>gi|255747176|ref|ZP_05421119.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262147248|ref|ZP_06028049.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262166864|ref|ZP_06034586.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262190629|ref|ZP_06048865.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|384423684|ref|YP_005633042.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|417811453|ref|ZP_12458115.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|417815223|ref|ZP_12461859.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|417819263|ref|ZP_12465881.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|418336243|ref|ZP_12945143.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|418342624|ref|ZP_12949426.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|418356574|ref|ZP_12959291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|419824849|ref|ZP_14348357.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|419835325|ref|ZP_14358771.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|421315620|ref|ZP_15766193.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|421319164|ref|ZP_15769724.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|421323199|ref|ZP_15773729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|421330603|ref|ZP_15781086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|421334200|ref|ZP_15784671.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|421338101|ref|ZP_15788541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|421341907|ref|ZP_15792315.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|421348846|ref|ZP_15799220.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|421356363|ref|ZP_15806692.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|422305806|ref|ZP_16392994.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|422890417|ref|ZP_16932844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|422901216|ref|ZP_16936596.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|422905402|ref|ZP_16940261.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|422912122|ref|ZP_16946653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|422921629|ref|ZP_16954842.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|422924600|ref|ZP_16957641.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|423143649|ref|ZP_17131268.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|423148632|ref|ZP_17135995.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|423152408|ref|ZP_17139626.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|423155207|ref|ZP_17142347.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|423159066|ref|ZP_17146041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|423163743|ref|ZP_17150541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|423729763|ref|ZP_17703086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|423733686|ref|ZP_17706903.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|423746985|ref|ZP_17711274.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|423891595|ref|ZP_17725288.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|423926371|ref|ZP_17729905.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|423946111|ref|ZP_17733325.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|423975254|ref|ZP_17736873.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|424000926|ref|ZP_17744020.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|424005086|ref|ZP_17748075.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|424007916|ref|ZP_17750872.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|424022881|ref|ZP_17762549.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|424589656|ref|ZP_18029104.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|424593901|ref|ZP_18033245.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|424597835|ref|ZP_18037038.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|424600600|ref|ZP_18039760.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|424605516|ref|ZP_18044485.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|424609233|ref|ZP_18048097.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|424612151|ref|ZP_18050963.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|424616029|ref|ZP_18054725.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|424620789|ref|ZP_18059321.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|424643609|ref|ZP_18081368.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|424651529|ref|ZP_18089058.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|424655476|ref|ZP_18092784.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|429885245|ref|ZP_19366841.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|440712312|ref|ZP_20892935.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443502428|ref|ZP_21069422.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443506335|ref|ZP_21073134.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443510171|ref|ZP_21076844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443514007|ref|ZP_21080553.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443517820|ref|ZP_21084244.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443522402|ref|ZP_21088653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443529332|ref|ZP_21095350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443534069|ref|ZP_21099993.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443536739|ref|ZP_21102598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|449054390|ref|ZP_21733058.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
gi|255735225|gb|EET90627.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262024694|gb|EEY43373.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262031308|gb|EEY49921.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033494|gb|EEY51996.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|327483237|gb|AEA77644.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|340042793|gb|EGR03757.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|340044179|gb|EGR05133.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|340045270|gb|EGR06215.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|341625864|gb|EGS51287.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|341627287|gb|EGS52606.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|341627856|gb|EGS53147.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|341641404|gb|EGS65957.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|341648380|gb|EGS72441.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|341648777|gb|EGS72812.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|356422305|gb|EHH75783.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|356426972|gb|EHH80250.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|356433419|gb|EHH86609.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|356434893|gb|EHH88056.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|356438189|gb|EHH91237.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|356443560|gb|EHH96380.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|356450670|gb|EHI03386.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|356451375|gb|EHI04062.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|356456564|gb|EHI09160.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|395922886|gb|EJH33700.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|395924059|gb|EJH34869.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|395925938|gb|EJH36731.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|395934998|gb|EJH45734.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|395937960|gb|EJH48666.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|395939138|gb|EJH49822.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|395946601|gb|EJH57263.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|395946630|gb|EJH57291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|395949073|gb|EJH59706.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|395964169|gb|EJH74408.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|395964343|gb|EJH74572.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|395967285|gb|EJH77382.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|395975825|gb|EJH85300.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|395979547|gb|EJH88895.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|408010284|gb|EKG48152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|408017232|gb|EKG54749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|408036766|gb|EKG73185.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|408037651|gb|EKG74036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|408045146|gb|EKG81011.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|408047091|gb|EKG82746.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|408057830|gb|EKG92664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|408611999|gb|EKK85350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|408627872|gb|EKL00664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|408628064|gb|EKL00841.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|408631968|gb|EKL04480.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|408643238|gb|EKL14972.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|408659229|gb|EKL30282.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|408660151|gb|EKL31177.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|408662188|gb|EKL33157.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|408666288|gb|EKL37083.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|408849421|gb|EKL89440.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|408849877|gb|EKL89877.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|408859105|gb|EKL98772.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|408867001|gb|EKM06364.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|408874802|gb|EKM13969.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|429227961|gb|EKY33916.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|439972085|gb|ELP48390.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443433213|gb|ELS75729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443437045|gb|ELS83153.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443440877|gb|ELS90557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443444697|gb|ELS97964.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443448535|gb|ELT05163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443451593|gb|ELT11846.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443459900|gb|ELT27293.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443462762|gb|ELT33789.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443467741|gb|ELT42396.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|448266183|gb|EMB03413.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
Length = 316
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|407069817|ref|ZP_11100655.1| tRNA-dihydrouridine synthase A [Vibrio cyclitrophicus ZF14]
Length = 326
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S+ LYTEM+ I++ +G+ FL ++ ++HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGD---FLEYNEQEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + +S +
Sbjct: 64 LGGSNPVDLAACAKLAGERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVADCVSAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++P++VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVTDIPITVKTRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y + +DF DL +NGG+ T+++ L+ VM+GR AY +P + L V
Sbjct: 183 PPLDYDRAYQIKKDFSDLVIAVNGGVTTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QVVE+ Y + L +N + + + +L F S PG ++
Sbjct: 241 DQQIFGLDTPIKKRSQVVEEMYPYIEREL----SNGASLGHISRHMLGLFQSMPGARQWR 296
Query: 311 R 311
R
Sbjct: 297 R 297
>gi|262401531|ref|ZP_06078098.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
gi|262352246|gb|EEZ01375.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
Length = 316
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + + ++
Sbjct: 58 PKDLAHCAKLAQDRGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ T++E L+ VM+GR AYQ+P Y L VD I+
Sbjct: 177 SRAYQIKRDFPHLTIAVNGGVKTLEEAKLHLQH-LDGVMIGREAYQSP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKLGAGLEVVEQALAKIP 310
>gi|83952336|ref|ZP_00961067.1| tRNA-dihydrouridine synthase A [Roseovarius nubinhibens ISM]
gi|83836009|gb|EAP75307.1| tRNA-dihydrouridine synthase A [Roseovarius nubinhibens ISM]
Length = 343
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 178/327 (54%), Gaps = 9/327 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S+ A LYTEM+ A ++ +G L +PE+HP+ LQ
Sbjct: 22 LSVAPMMDWTDRHCRYLHRLLSREALLYTEMVTAPALV--RGGAMHLLDHAPEEHPVALQ 79
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+A L YDEINLNCGCPS +V G FG LM DP V + + +
Sbjct: 80 LGGSDPEELAEAARLGAEAGYDEINLNCGCPSDRVQS-GTFGAVLMTDPGRVADCCAAMI 138
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T+V V+VKCRIGVDD D L +F+ +V + R F IH+RKA L G+SP ENR I
Sbjct: 139 AATDVEVTVKCRIGVDDQDPEEVLPEFLARVGAAGVGR-FTIHARKAWLKGLSPKENRDI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ ++ FP L ++NGGI T+D L +G VM+GRAAY P L
Sbjct: 198 PPLDYDLARRMIGLFPSLHLSINGGIATLDHAVELLDQGFDGVMLGRAAYHQPADILCAA 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G T V+ Y +A L G + + + +L F PG ++
Sbjct: 258 DRRIFGHDGPDSTAEDAVQAMLPYIEAHLAAGGR----LNQITRHMLGLFAGRPGARAWR 313
Query: 311 RKADAAFQTCKTVKSFLEETIVAI-PD 336
R +EE + I PD
Sbjct: 314 RMLSEGASRPGAGPELVEEALTQIAPD 340
>gi|424658273|ref|ZP_18095531.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
gi|408055444|gb|EKG90374.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
Length = 316
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLNY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|329849777|ref|ZP_08264623.1| tRNA-dihydrouridine synthase A [Asticcacaulis biprosthecum C19]
gi|328841688|gb|EGF91258.1| tRNA-dihydrouridine synthase A [Asticcacaulis biprosthecum C19]
Length = 340
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 177/307 (57%), Gaps = 11/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+ L FSVAPMMDWTD H R R ++K A LYTEM+ + +I+ G+ +R + FS +
Sbjct: 2 RILASKFSVAPMMDWTDRHCRAFHRALTKRALLYTEMVTTKAVIH--GDRERLIGFSDIE 59
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+ LA+ ++A + YDEINLNCGCPS +V G FG LM DP+ V +
Sbjct: 60 HPVALQLGGSDPAELAQCAKIAEDWGYDEINLNCGCPSDRVQS-GAFGACLMRDPQLVAD 118
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
M + + +P +VKCRIGVDD D + L + T FI+H+RKA L G+SP
Sbjct: 119 GMQAMIEASKLPATVKCRIGVDDQDPRDALFTLVEACRKAGVTT-FIVHARKAWLKGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL YE Y L R PDL ++NGGI +D+ L+ VM+GRAAY P
Sbjct: 178 KENRDIPPLDYELVYELKRSHPDLFISINGGIANLDDAQRHLQH-VDGVMLGRAAYHEPA 236
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LG VDT+++G S + + ++ Y+ Y I P + + + +L H P
Sbjct: 237 L-LGQVDTSVFGG-SKDVAPFEALDAYRPY---IAARLDEGVP-LTHMTRHILGLMHGLP 290
Query: 305 GNGLFKR 311
G F+R
Sbjct: 291 GARAFRR 297
>gi|419337329|ref|ZP_13878832.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
gi|378178252|gb|EHX39021.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
Length = 313
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 179/298 (60%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A+ YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAQCAKLAEAHGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L VD I+
Sbjct: 177 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|209527420|ref|ZP_03275926.1| TIM-barrel protein, yjbN family [Arthrospira maxima CS-328]
gi|209492155|gb|EDZ92504.1| TIM-barrel protein, yjbN family [Arthrospira maxima CS-328]
Length = 338
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II G+ + L FSPE+ P+ LQ
Sbjct: 24 LSIAPMMDRTDRHFRYFMRQITRRPLLYTEMVTSAAII--NGDRHKLLDFSPEEKPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + + LA ++A + YDEINLN GCPS +V +G FG LM +P+ V +A+S +
Sbjct: 82 VGGDDPNELATCAKIAEDWGYDEINLNVGCPSARVQ-NGNFGACLMAEPERVAQAISAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + F+ +V + S + F +H+RKA L G+SP +NR I
Sbjct: 141 KAVNIPVTVKHRIGIDNRDRYEDMAAFV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +FPDLT +NGG T+++V L K VM+GRAAY NP Y
Sbjct: 200 PPLRYGDVHRLKAEFPDLTIEINGGFTTLEQVKQQLTK-VDAVMIGRAAYDNP-YLFAIA 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR QVVE+ Y + L G + V++ +L F +PG +K
Sbjct: 258 DREIYGENINPPTRHQVVEQMLPYIENWLSQGG----RLNSVVRHILQLFAGQPGTKAWK 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|422807140|ref|ZP_16855571.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
gi|324112315|gb|EGC06293.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
Length = 333
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 162/250 (64%), Gaps = 6/250 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G++P ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLNPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKMHLQH-MDGVMVGREAYQNPG-ILSAV 247
Query: 251 DTAIYGAPSS 260
D I+ + +
Sbjct: 248 DREIFASTDT 257
>gi|50122581|ref|YP_051748.1| tRNA-dihydrouridine synthase A [Pectobacterium atrosepticum
SCRI1043]
gi|49613107|emb|CAG76558.1| putative dihydrouridine synthase [Pectobacterium atrosepticum
SCRI1043]
Length = 340
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 179/307 (58%), Gaps = 22/307 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM D V + + +
Sbjct: 81 LGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGDAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LC+FI V+ FI+H+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCEFIQTVAERGECDTFIVHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKMHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYGAPSSGLTRRQVVE------KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D ++G ++ VV + ++ GDA LG + + +L F P
Sbjct: 258 DRELFGIDAATQDLAGVVRSMYPYIERELSGDASLG----------HITRHMLGMFQGIP 307
Query: 305 GNGLFKR 311
G ++R
Sbjct: 308 GARQWRR 314
>gi|442610331|ref|ZP_21025054.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748107|emb|CCQ11116.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 336
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 186/326 (57%), Gaps = 11/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R +SKHA LYTEM+ II+ +G+ +L+F + P+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRTFHRKLSKHAVLYTEMVTTGAIIFGKGD---YLSFGEHEMPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ + A A Y EINLN GCPS +V +G FG LM +PK V E ++ +
Sbjct: 79 LGGSDPKALAECAKRAAALGYSEINLNVGCPSDRVQ-NGRFGACLMAEPKLVAECVAAMK 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ DSY L I + IIH+RKA L G+SP ENR I
Sbjct: 138 AEVSIPVTVKTRIGIDEQDSYEFLTQLIEDCHDVG-CDDVIIHARKAWLKGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +D+P L ++NGGI T++E L + VM+GR AY NP + L V
Sbjct: 197 PPLDYPRVYQLKKDYPQLHVSINGGIKTIEECQHHL-QFVDGVMIGREAYANP-FMLSQV 254
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG +T+ +VV Y + + T G+N H + + +L F ++ G LF+
Sbjct: 255 DELIYGDAPFAMTKHEVVRSMYDYIETQM-TQGSNFWH---IARHMLGIFQNQQGARLFR 310
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R +EE + +P+
Sbjct: 311 RHLSENGHKKTADIRVMEEALAFVPE 336
>gi|53804232|ref|YP_114112.1| tRNA-dihydrouridine synthase A [Methylococcus capsulatus str. Bath]
gi|53757993|gb|AAU92284.1| TIM-barrel protein, yjbN family [Methylococcus capsulatus str.
Bath]
Length = 360
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 178/302 (58%), Gaps = 11/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RLIS+H LYTEM+ I++ G+ +R L F P +HP+ +Q
Sbjct: 30 LSVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILH--GDRERLLGFHPAEHPLAIQ 87
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+ ++A +DE+NLN GCPSP+V G FG LM +P+ V + + +
Sbjct: 88 LGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQT-GRFGACLMAEPERVADCVRAMC 146
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L F+ V+ + R FI+H+RKA L G+SP ENR
Sbjct: 147 EAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAE-AGCRTFIVHARKAWLQGLSPKENRQT 205
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L + P+L LNGGI T+DE L VM+GRAAY NP Y L
Sbjct: 206 PPLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL-SWCDGVMIGRAAYHNP-YLLAEA 263
Query: 251 DTAIYG-APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D YG + TR +V+E + Y L +R H + + +L +H+ PG +
Sbjct: 264 DRRCYGHSDVRPRTREEVIEDFMPYVRNELSK--GSRLHA--LTRHILGLYHATPGGKRW 319
Query: 310 KR 311
+R
Sbjct: 320 RR 321
>gi|388565745|ref|ZP_10152228.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
gi|388267108|gb|EIK92615.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
Length = 335
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 7/267 (2%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R L RL++KH LYTEM+ +++ G++ R L F+ E+HP+
Sbjct: 9 PWRLSVAPMMDWTDRHCRFLHRLLTKHTLLYTEMVTTGALMH--GSVQRHLRFNAEEHPV 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D LA+A L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 67 ALQLGGSEADELARAARLGEEWGYDEINLNCGCPSERVQ-RGAFGACLMAEPQTVADGVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D +SY + DF+ V+ + FI+H+R A L G+SP EN
Sbjct: 126 AMRDAVSLPVTVKHRIGIDKTESYEFVRDFVGTVAD-AGCEVFIVHARNAWLQGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+YE + L RDFP LT +NGG T +++ L+ VM+GR AY +PW L
Sbjct: 185 REVPPLRYELAHRLKRDFPRLTIAVNGGFTTNEQIAEHLQH-VDGVMLGREAYHHPWL-L 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY 274
D A +GAP S L R V ++ Y
Sbjct: 243 TTWDEAFFGAPPSALDRDAVEDEMVRY 269
>gi|315633448|ref|ZP_07888738.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
gi|315477490|gb|EFU68232.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
Length = 327
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 191/328 (58%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ + II+ + + L F ++P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDTAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM + + V E + +
Sbjct: 70 LGGSDPEQLQHCAQLAQQRGYQEINLNVGCPSDRVQ-NGMFGACLMANAELVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VK RIG+DD DSY+ LCDF+ KV + + FI+H+RKA L+G+SP +NR I
Sbjct: 129 SAVHIPVTVKTRIGIDDFDSYDFLCDFVQKVHQ-AGCQEFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFP L ++NGGI T +E+ L K VMVGR AYQNP LGH+
Sbjct: 188 PPLNYERVYQLKQDFPHLLISINGGIKTTEEMQQHL-KYVDGVMVGREAYQNP-ALLGHI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A + +T RQ VE Y + L G Y N+ +++ +L F G
Sbjct: 246 DHTLFDANAPIITPRQAVENMFPYIEQQLSQGVYLNH------IVRHMLGAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R KA A +T F+EE
Sbjct: 300 WRRYLSENAYKAGAGIDVVETALGFVEE 327
>gi|91227265|ref|ZP_01261690.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
gi|91188659|gb|EAS74948.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
Length = 315
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 187/323 (57%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + ++
Sbjct: 58 PADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E A L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKQDFSHLTIAINGGVKSLEEAKAHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F S PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|410085161|ref|ZP_11281881.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
gi|409768370|gb|EKN52432.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
Length = 348
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+HA LYTEM+ I++ +G+ +LA++ +HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGD---YLAYNEAEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A YDEINLN GCPS +V +G FG LM + V + ++ +
Sbjct: 85 LGGSDPAALAQCAKIAQERGYDEINLNVGCPSDRVQ-NGMFGACLMGNASLVADCVAAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++PV+VK RIG+DD DSY LCDF+ V+ F+IH RKA L+G+SP ENR I
Sbjct: 144 DVTDIPVTVKTRIGIDDQDSYEFLCDFVGTVADRGGCEMFVIHGRKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT LNGGI T++E L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKKDFPHLTMALNGGIKTLEEAKTHLQY-MDGVMVGREAYQNP-SILAQV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ A VE Y +A L T G H + + +L F PG ++
Sbjct: 262 DNVLFDAALPVTDTVAAVEAMYPYIEAELAT-GTYLGH---ITRHMLGIFQGIPGARQWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|417823509|ref|ZP_12470103.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
gi|340048480|gb|EGR09400.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
Length = 316
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + + ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|425079376|ref|ZP_18482473.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405607888|gb|EKB80840.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
Length = 313
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 173/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + + ++
Sbjct: 58 PQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGTFGACLMGNAPLVADCIKAMRDAVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI ++DE L VMVGR AYQNP L VD I+
Sbjct: 177 PRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNP-DILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|422908913|ref|ZP_16943571.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
gi|341637207|gb|EGS61896.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
Length = 316
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTQFIDTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALAKIP 310
>gi|386815146|ref|ZP_10102364.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
gi|386419722|gb|EIJ33557.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
Length = 328
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 163/258 (63%), Gaps = 6/258 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWTD H R RL++K A LYTEM+ I++ G+ DR L F +HP+ LQ
Sbjct: 8 FTVAPMLDWTDRHCRYFHRLLTKQAVLYTEMVTVGAILH--GDRDRHLRFDVAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +A+ +A Y YDE+N+N GCPS +V G FG LM +P+ + E ++ +
Sbjct: 66 LGGSEPAEMAECARIAEDYGYDEVNINVGCPSERVQ-KGAFGACLMAEPQLIAECVAAMQ 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ + Y L F+ VS + + FI+H+RKA L G+SP ENR I
Sbjct: 125 AAVSIPVTVKNRIGIDEQEDYAGLRQFVSTVSE-AGCQTFIVHARKAWLKGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L ++FPDL +NGGI T+++ LR VMVGR AY NPW L V
Sbjct: 184 PPLRYELVYQLKQEFPDLEIIINGGITTLEQCQQHLRH-VDGVMVGREAYHNPWL-LAQV 241
Query: 251 DTAIYGAPSSGLTRRQVV 268
D +YG +S R+ V+
Sbjct: 242 DLVLYGTGTSFHNRKAVL 259
>gi|322515077|ref|ZP_08068085.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322118957|gb|EFX91134.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 323
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 189/334 (56%), Gaps = 23/334 (6%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDL---LEYDPSE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKANLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDTVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL YE Y L RDFP L ++NGGI TVDE+ L VMVGR AYQNP
Sbjct: 178 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTVDEIKQHL-VFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHS 302
LG +D+ I+G +T R+ VEK Y +A G Y N+ +++ +L F +
Sbjct: 236 SLLGEIDSQIFGENRPLVTAREAVEKMLPYIEAQTQKGVYLNH------IVRHMLGAFQN 289
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLEE 329
G ++R K A + + SF+++
Sbjct: 290 CKGARQWRRHLSENATKQGAGVEVVEQALSFVQK 323
>gi|323454823|gb|EGB10692.1| hypothetical protein AURANDRAFT_22498 [Aureococcus anophagefferens]
Length = 378
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 190/355 (53%), Gaps = 31/355 (8%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY-----QQGNLDRFLAFSPEQH 65
FSVAPMMD+TD H+R L RL+S+ A LYTEM+ A T++ + G+ R+L + +
Sbjct: 21 FSVAPMMDYTDRHFRYLLRLLSREAVLYTEMVTAATLVDGAGAPRHGDGARWLGYDDDAG 80
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
VLQ+GG++ L A LA Y +NLNCGCPS +VAG GCFG +LM D V +
Sbjct: 81 RTVLQLGGADPAQLGAAARLAAPRGYAGVNLNCGCPSDRVAGQGCFGAALMRDAALVADC 140
Query: 126 MSVIAANTNVPVSVKCRIGV---------DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176
+ +A + PVSVKCR+GV DD Y L +F+ V++ HF++H+R
Sbjct: 141 VDALA--EHAPVSVKCRVGVCDTVSDMVDDDEALYAGLANFVSTVAARGTCAHFVVHARV 198
Query: 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236
A+L+G+SP +NR +PPLK L +FP+LT NG I++ + VM G
Sbjct: 199 AVLSGLSPDKNRKVPPLKPRLVSRLADEFPELTVVSNGEISSYESARDRSEGNVAGVMAG 258
Query: 237 RAAYQNPWYTLGHVDTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRPHV------ 289
R + PWY +VD+A++GA + +RR V + G H
Sbjct: 259 RDVCKRPWY-YANVDSALFGADADPAASRRDV-----LLGAYAAYAAAFEADHARADWSP 312
Query: 290 -RDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKT-VKSFLEETIVAIPDSVLDSP 342
R ++KP L FH PG G FKR+ DA + V+ LE +PD VLD+P
Sbjct: 313 RRALLKPALGLFHGSPGAGRFKREVDALAKGGDAGVREILERAAALVPDDVLDAP 367
>gi|410694288|ref|YP_003624910.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
gi|294340713|emb|CAZ89105.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
Length = 352
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 181/303 (59%), Gaps = 11/303 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H R RLI++ A LYTEM+ ++Y G++ R L +S +HP+ LQ
Sbjct: 5 LSIAPMLDWTDRHCRYFHRLITRQALLYTEMVTTGALLY--GDVARHLDYSSHEHPVALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI- 129
+GGS +LA LA + YDEINLNCGCPSP+V G FG LM +P V ++++ +
Sbjct: 63 LGGSEPVDLACCARLALEWGYDEINLNCGCPSPRVQ-RGAFGACLMAEPSRVRDSVAAMV 121
Query: 130 -AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
A + +PV+VK RIGVD DSY + DF+ VS FI+H+R A L+G+SP ENR
Sbjct: 122 EAVSGTIPVTVKHRIGVDHEDSYGFVRDFVGTVSQ-GGCETFIVHARSAWLDGLSPKENR 180
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
IPPL+ E+ L RDFP L F LNGGI T ++ L + VMVGRAAYQ+PW +L
Sbjct: 181 DIPPLRPEFILQLRRDFPALAFVLNGGIKTGQQIGEWLPQ-VSGVMVGRAAYQDPW-SLA 238
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D G+ S R++VE+ A + + H + + + +L+ + +PG
Sbjct: 239 TWDREFLGSADSAAPEREIVEEQM---GAYIAAWKAKGLHPQAITRHMLNLWKGQPGGRR 295
Query: 309 FKR 311
+++
Sbjct: 296 WRQ 298
>gi|260428471|ref|ZP_05782450.1| tRNA-dihydrouridine synthase A [Citreicella sp. SE45]
gi|260422963|gb|EEX16214.1| tRNA-dihydrouridine synthase A [Citreicella sp. SE45]
Length = 372
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 171/301 (56%), Gaps = 8/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+VAPMMDWTD H R L RL+S++A LYTEM+ A ++ +G L F+PE+HP+ LQ
Sbjct: 53 LAVAPMMDWTDRHCRYLHRLLSRNALLYTEMVTAPALV--RGGAVHLLDFNPEEHPVALQ 110
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ D LA+A +L A YD+I+LNCGCPS +V G FG LM P+ V + ++ +
Sbjct: 111 LGGSDPDELAQAAKLGGAAGYDQIDLNCGCPSDRVQS-GTFGAVLMKTPELVADCVAAMQ 169
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T V V+VKCRIGVDD L FI KV + R IH+RKA L G+SP ENR I
Sbjct: 170 EATAVEVTVKCRIGVDDQKPREVLPAFIDKVRG-AGCRRIAIHARKAWLQGLSPKENREI 228
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + + FPDL +LNGG+ ++ V L +G VMVGRAAY PW L
Sbjct: 229 PPLDYAIVHEMKAAFPDLHVSLNGGVESLATVEKLLDEGLDGVMVGRAAYHQPWDILAEA 288
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + ++ Y + L G + V + +L F PG ++
Sbjct: 289 DARIWGEERETPSPEEIARAMLPYIERHLSDGGK----LHQVTRHMLGLFAGRPGARGWR 344
Query: 311 R 311
R
Sbjct: 345 R 345
>gi|350421252|ref|XP_003492785.1| PREDICTED: miniconductance mechanosensitive channel-like [Bombus
impatiens]
Length = 769
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 184/301 (61%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ A LYTEM+ I+Y +G+ +LAF+ ++HP+ LQ
Sbjct: 456 FSVAPMLDWTDRHCRYFHRLLSQQALLYTEMVTTGAILYGKGD---YLAFNEQEHPVCLQ 512
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LAK +LA YDEINLN GCPS +V +G FG LM + + V +++ +
Sbjct: 513 LGGSDPVALAKCAKLAMQRGYDEINLNVGCPSDRVQ-NGMFGACLMANAELVARSIAAMR 571
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC FI V L T+ F+IH+RKA L+G+SP ENR I
Sbjct: 572 EVVDIPVTVKTRIGIDNEDSYEFLCQFIETV--LPYTQTFVIHARKAWLSGLSPKENRDI 629
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P LT +NGGI T++E+ L VMVGR AYQNP + + +
Sbjct: 630 PPLDYPRVYQIKKDYPQLTVAINGGIKTIEEIKTHLNY-VDGVMVGREAYQNP-FLVTQI 687
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+GA +S + + + Y + L T G H +M+ L F+ G ++
Sbjct: 688 DQHIFGANTSIIDPVAAIRQLYPYIEQEL-TQGTQLNH---IMRHTLGLFNGRKGAKQWR 743
Query: 311 R 311
R
Sbjct: 744 R 744
>gi|416893370|ref|ZP_11924558.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
gi|347813924|gb|EGY30576.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
Length = 327
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 190/328 (57%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ A+ II+ + + L F +HP+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTAQAIIHAKYD---HLDFDAAEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKADLVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+DD DSY+ L +F+ V + + FI+H+RKA L+G+SP +NR I
Sbjct: 129 SAVQIPVTVKTRIGIDDFDSYDFLYNFVQTVKQ-AGCQEFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFPDL ++NGGI T++E+ L+ VMVGR AYQNP LGH+
Sbjct: 188 PPLDYERVYQLKRDFPDLLISINGGIKTIEEIQRHLQH-VDGVMVGREAYQNP-SLLGHI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T RQ VE Y ++ L G Y N+ +++ +L F + G
Sbjct: 246 DQALFDPNAPIITPRQAVESMLPYIESQLSQGVYLNH------IVRHMLGAFQNCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R K A + +T F+EE
Sbjct: 300 WRRYLSENAYKEGAGIEVVETALGFVEE 327
>gi|410090253|ref|ZP_11286850.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409762459|gb|EKN47478.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 339
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 176/291 (60%), Gaps = 6/291 (2%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+RQ L FSVAPMMDWTD+H R RL+SKHA LYTEM+ +++ G+ RFL
Sbjct: 15 SRQPLSRRFSVAPMMDWTDHHCRFFLRLLSKHALLYTEMVTTGALLH--GDSARFLQHDE 72
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
+HP+ LQ+GGS +LA +A YDE+NLN GCPS +V + G LM P+ V
Sbjct: 73 TEHPLALQLGGSTAADLAACARMAEGVGYDEVNLNVGCPSDRVQNN-MIGACLMGHPELV 131
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + ++PV+VK RIG++ DSY QLCDF+ KV + + F +H+R A+L G+
Sbjct: 132 ADCVKAMRDAVSIPVTVKHRIGINGRDSYEQLCDFVGKVHE-AGCQSFTVHARIAILEGL 190
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL+Y+ L +DFP L LNGGI T+++ L+ VM+GR AY N
Sbjct: 191 SPKENRDIPPLRYDVVAQLKKDFPQLEIVLNGGIKTLEQCQEHLQT-FDGVMLGREAYHN 249
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVM 293
P Y L VD ++G+ + ++R + +E + Y +A L + GN R V+
Sbjct: 250 P-YLLAEVDQQLFGSTAPVISRAEALEALRPYIEAHLASGGNMHHITRHVL 299
>gi|386390228|ref|ZP_10075022.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
gi|385693538|gb|EIG24179.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
Length = 326
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 188/329 (57%), Gaps = 23/329 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ A I++ + +L L + P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAILHAKYDL---LEYDPAENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA +L Y E+NLN GCPS +V +G FG LM V + + +
Sbjct: 67 LGGSNPKQLAHCAKLVEERGYAEVNLNVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI KV + S FI+H+RKA L+G+SP ENR I
Sbjct: 126 DAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQAYS--NDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPHLNISINGGIKTIEEIKYHL-QFVDGVMVGREAYQNP-SLLGEI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D+ I+G +T R+ VEK Y + L G Y N+ +++ +L F + G
Sbjct: 242 DSQIFGENRPLVTAREAVEKMLPYIEKELAKGVYLNH------IVRHMLGAFQNCKGARQ 295
Query: 309 FKR-------KADAAFQTCKTVKSFLEET 330
++R KA A + F+E T
Sbjct: 296 WRRYLSENACKAGANVSVVEEALKFVENT 324
>gi|416934020|ref|ZP_11933791.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
gi|325525397|gb|EGD03227.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
Length = 328
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 177/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAFSP + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFSPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMNDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCATFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP+L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPELEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ + TR + K Y A L GTY + +++ L + PG ++R
Sbjct: 235 GSTDAAPTREEAEAKLIEYCAAELKRGTY------LGAIVRHALGLYRGMPGARGWRR 286
>gi|87122404|ref|ZP_01078285.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
gi|86162379|gb|EAQ63663.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
Length = 349
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 16/329 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWT + YR AR ++ LYTEM+ ++ + N +RFL F +HPI LQ
Sbjct: 21 FSIAPMLDWTTSDYRVFARALTTETLLYTEMVTTGALL-KGDNPERFLRFEDIEHPIALQ 79
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+ +LA + YDE+NLN GCPS KV H G LM P+ V +AM +
Sbjct: 80 LGGSDANALAQCAKLAEKFGYDEVNLNAGCPSYKVQ-HSLIGAILMAHPEKVKDAMKAMQ 138
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV++K RIG+DD Y+ + DFI V++ + T+ FI+H+R A+L G+SP +NR I
Sbjct: 139 DACSIPVTLKHRIGLDDQQDYSIVRDFIGDVAT-TGTQTFIVHARNAILAGLSPKQNREI 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY++ Y L +DFPDL +NGGI T+DE L K VMVGR AY NPW L V
Sbjct: 198 PPLKYDFVYQLKKDFPDLEIIINGGIKTLDECEHHL-KHLDGVMVGREAYNNPW-ILSQV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++ R Q + + + + L NN + + + ++ F +PG F+
Sbjct: 256 DSRLFDKEDQVQDRIQALRNFVPFVEHRL----NNGERLSHLTRHIMGIFLGQPGGKQFR 311
Query: 311 R-------KADAAFQTCKTVKSFLEETIV 332
R K DA+ K + E +
Sbjct: 312 RYLSEQGHKKDASIDVLKQAIDLVTEQLT 340
>gi|167845866|ref|ZP_02471374.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei B7210]
Length = 333
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/268 (46%), Positives = 169/268 (63%), Gaps = 8/268 (2%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R+ R IS+HAWLYTEM+ +I+ G++ R LAF+P++ P+ LQ+GGS
Sbjct: 1 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIH--GDVARHLAFTPDEAPVALQLGGSEP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
+LA + +L + YDEINLNCGCPS +V G FG LM +P+ V + + + ++P
Sbjct: 59 ADLAHSAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIGVD + Y + DF+ V++ + F++H+R A+L G+SP ENR IPPLKY+
Sbjct: 118 VTVKHRIGVDAVEDYAFVRDFVGTVAA-AGCDVFVVHARNAILKGLSPKENREIPPLKYD 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y Y L RDFP + +NGG+ T+DEV LR VM+GR AY NP Y L +D YG
Sbjct: 177 YAYRLKRDFPQIEIVINGGVTTLDEVEQHLRH-VDGVMLGREAYHNP-YVLAGIDARFYG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAIL--GTY 282
A + TR +V K Y A L GTY
Sbjct: 235 ASAPAPTREEVEAKLVEYCAAELARGTY 262
>gi|345872216|ref|ZP_08824154.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
gi|343919297|gb|EGV30047.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
Length = 330
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 16/305 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RLIS+H LY+EM+ +I+ G+ +R L F +HP+ LQ
Sbjct: 3 LSVAPMLDWTDRHCRYFLRLISRHTLLYSEMVTTGALIH--GDCERHLRFDAAEHPLALQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ + + YDE+N+N GCPS +V +G FG LM +P V E + +
Sbjct: 61 LGGSDPADMARCARIGADWGYDEVNINVGCPSDRVQ-NGRFGACLMAEPGLVAECVKAMK 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY +L DF+ + + I+H+RKA L+G+SP ENR I
Sbjct: 120 DVVSIPVTVKTRIGIDDRDSYEELVDFV-GAQAEAGCDAIIVHARKAWLSGLSPRENRDI 178
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L RDFPDL +NGGI T+DE L + VM+GR AYQNPW L
Sbjct: 179 PPLRYDVALRLKRDFPDLPMAVNGGIKTLDEAAEFLTQ-LDGVMIGREAYQNPW-ILAEA 236
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GT-YGNNRPHVRDVMKPLLHFFHSEPGNG 307
D I+G + R QV++ + Y + L GT G H+ L F ++PG
Sbjct: 237 DRRIFGDDRAPPDRFQVLDDFIRYAERELAQGTPLGTMSRHI-------LGLFQAQPGAR 289
Query: 308 LFKRK 312
++R+
Sbjct: 290 AWRRQ 294
>gi|259909942|ref|YP_002650298.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
gi|224965564|emb|CAX57096.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
Length = 331
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 185/330 (56%), Gaps = 17/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +++ LY+EM+ II+ +G+ +LAFS E+HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGD---YLAFSSEEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y EINLN GCPS +V +G FG LM + + V + + +
Sbjct: 67 LGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY LCDFI+ VS FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGG+ ++ E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQY-LDGVMMGREAYQNPGL-LAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G S VV Y + L N ++ V + +L F PG ++
Sbjct: 244 DRELFGCTSPAADPIAVVRSMYPYIERELA----NGTYLGHVTRHMLGLFQGIPGARQWR 299
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R KA A + + S + E + A
Sbjct: 300 RYLSENAHKAGAGIEVVEKALSMVAEKVPA 329
>gi|418056438|ref|ZP_12694491.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
gi|353209657|gb|EHB75060.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
Length = 336
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F +APMMDWTD H R R ++KHA LYTEM+ A+ +I+ GN R L FS +HPI LQ
Sbjct: 9 FCIAPMMDWTDRHCRVFHRHLTKHALLYTEMVTADAVIH--GNRARLLGFSDVEHPIALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A + Y+EINLN GCPS +V G FG LM +P+ V ++ +
Sbjct: 67 LGGSEPAKLAEAARIGVDLGYNEINLNVGCPSDRVQ-EGRFGACLMSEPELVAACVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A+ +VPV+VKCRIG+D+ D L FI V+ TR FI+H+RKA L G+SP ENR +
Sbjct: 126 AHHSVPVTVKCRIGIDEQDEEEDLRRFIEVVAGAGCTR-FIVHARKAWLKGLSPKENREV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L P L LNGGI T+D+ A L VM+GRAAYQNP L V
Sbjct: 185 PPLDYARVYRLKAAHPGLEIVLNGGIETIDDARAHLDH-VDGVMLGRAAYQNP-AILADV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + TR + Y + L G + +V + +L +H +P F+
Sbjct: 243 DRVIFGVEAESPTRAAALNAIVPYVEQHLSRGGR----LSNVTRHVLGLYHGQPRGKAFR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|171317498|ref|ZP_02906688.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|172060541|ref|YP_001808193.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria MC40-6]
gi|171097327|gb|EDT42172.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|171993058|gb|ACB63977.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MC40-6]
Length = 328
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/269 (45%), Positives = 167/269 (62%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ KV+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGKVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYQLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
G+ ++ TR + K Y A L GTY
Sbjct: 235 GSTAAVPTREEAEAKLIEYCAAELKRGTY 263
>gi|358450745|ref|ZP_09161196.1| tRNA-dihydrouridine synthase A [Marinobacter manganoxydans MnI7-9]
gi|357225041|gb|EHJ03555.1| tRNA-dihydrouridine synthase A [Marinobacter manganoxydans MnI7-9]
Length = 344
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 183/326 (56%), Gaps = 17/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPMMDWT +HYR LAR +S+H LYTEM+ +I+ G+ RFL ++P+ LQ
Sbjct: 20 FCVAPMMDWTTSHYRYLARQLSRHTLLYTEMVTTGALIH--GDTARFLRHDEAEYPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA LA Y +DE+NLN GCPS +V + G LM P V E + +
Sbjct: 78 LGGSDAGELAHCARLAQQYGFDEVNLNVGCPSDRVQNN-MIGACLMGHPDKVAEGVRAMI 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PV+VK RIG+D +S++ LC+F+ KVS + R FI+H+R A+L G+SP ENR +
Sbjct: 137 EATELPVTVKHRIGIDGRESWDDLCEFVEKVSE-AGCRTFIVHARIAILEGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY++ Y L +P L +NGGI T DE + LR VM+GR AY NPW G V
Sbjct: 196 PPLKYDWVYRLKAKYPHLEIIINGGIKTFDECHEHLRH-TDGVMLGREAYHNPWLLAG-V 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G + TR Q + + +G+ + + + LL FH +PG F+
Sbjct: 254 DPEFFGEAAPVETRHQALRAMLPF----IGSELERGVFLTHMSRHLLGLFHGQPGGRQFR 309
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R K+ A + +T + E
Sbjct: 310 RYISENAHKSGAGLEVIETALEKVRE 335
>gi|152972912|ref|YP_001338058.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957761|gb|ABR79791.1| conserved protein, FMN-linked [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 313
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 173/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + + ++
Sbjct: 58 PQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNALLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI ++DE L VMVGR AYQNP L VD I+
Sbjct: 177 PRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|401678882|ref|ZP_10810835.1| DusA Protein [Enterobacter sp. SST3]
gi|400213867|gb|EJO44800.1| DusA Protein [Enterobacter sp. SST3]
Length = 313
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 175/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L RDFP LT ++NGGI +++E A L VMVGR AYQNP L VD I+
Sbjct: 177 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHLEH-MDGVMVGREAYQNPG-ILATVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L +N ++ + + +L F PG ++R
Sbjct: 235 GIEGADTDPVAVVRAMYPYIEREL----SNGTYLGHITRHMLGLFQGIPGARQWRR 286
>gi|260767137|ref|ZP_05876081.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
gi|260617858|gb|EEX43033.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
Length = 316
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 185/327 (56%), Gaps = 14/327 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + A ++
Sbjct: 58 PVDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMKAVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L F+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTHFVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DFP LT +NGG+ ++ E L+ VM+GR AYQ+P Y L VD I+
Sbjct: 177 PRAYQLKQDFPQLTIAVNGGVKSLAEAKEHLQH-LDGVMIGREAYQSP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
G + R QVV++ Y + L G+Y + + + +L F + PG ++R
Sbjct: 235 GLDTPVKKRSQVVQEMYPYIEQQLAQGSY------LGHITRHMLGLFQNMPGARQWRRHI 288
Query: 314 DAAFQTCKTVKSFLEETIVAIPDSVLD 340
+E+ + IP LD
Sbjct: 289 SENAHKAGAGIEVVEQALAKIPYQELD 315
>gi|428201333|ref|YP_007079922.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
gi|427978765|gb|AFY76365.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
Length = 333
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+ TD H+R R I++ LYTEM+ I+ +G+ D+ L FSPE+ P+ LQ
Sbjct: 16 LSVAPMMERTDRHFRYFMRQITRRTLLYTEMITTAAIL--RGDRDKLLGFSPEEKPLSLQ 73
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N +L + +A YDEINLN GCPS +V G FG LM P+ V A+ +
Sbjct: 74 LGGDNPKDLTECARIAEDRGYDEINLNVGCPSSRVK-EGNFGACLMAQPEKVARAVEAMQ 132
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y + +F+ ++ S + R F +H+RKA L G+SP ENRT+
Sbjct: 133 KAVDLPVTVKHRIGIDDRDRYEDMANFV-RIVSEAGCRRFTVHARKAWLQGLSPKENRTM 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L R+FP L +NGGI T+ EV L K VM+GRAAY NP + V
Sbjct: 192 PPLRYGDVHRLKREFPHLFIEINGGITTLAEVREQL-KSVDAVMIGRAAYDNP-FLFATV 249
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TRR+VVE Y D L + + + +L F +PG+ +K
Sbjct: 250 DRDIYGEKVTPPTRREVVESMLPYIDYWLKKGWK----LHAISRHMLELFAGQPGSKAWK 305
Query: 311 R 311
R
Sbjct: 306 R 306
>gi|429098155|ref|ZP_19160261.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
gi|426284495|emb|CCJ86374.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
Length = 331
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 184/326 (56%), Gaps = 10/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDE+NLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDEQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T++E A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLRRDFPQLTMSINGGIKTLEEAKAHLEH-MDGVMVGREAYQNPGL-LASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L +N ++ + + +L F PG ++
Sbjct: 248 DRDIFGLDTPVADPVAVVRAMYPYIEREL----SNGAYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R S LE+ + + D
Sbjct: 304 RYLSENAHKPGADISVLEQALKLVAD 329
>gi|301046994|ref|ZP_07194104.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|415838167|ref|ZP_11520150.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|425302971|ref|ZP_18692844.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|442605866|ref|ZP_21020680.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
gi|300301082|gb|EFJ57467.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|323190088|gb|EFZ75366.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|408209754|gb|EKI34338.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|441713128|emb|CCQ06657.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
Length = 313
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 178/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L VD I+
Sbjct: 177 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|262045546|ref|ZP_06018567.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330004874|ref|ZP_08305056.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
gi|259037105|gb|EEW38355.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536493|gb|EGF62835.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
Length = 313
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 173/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + + ++
Sbjct: 58 PQALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAPLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI ++DE L VMVGR AYQNP L VD I+
Sbjct: 177 PRVWQLKRDFPHLTMAINGGIKSLDEARVQLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + VV Y + L GTY + + + +L F PG ++R
Sbjct: 235 GVAGADADPVAVVRAMYPYIERELSKGTY------LGHITRHMLGLFQGIPGARQWRR 286
>gi|126735535|ref|ZP_01751280.1| TIM-barrel protein, yjbN family [Roseobacter sp. CCS2]
gi|126714722|gb|EBA11588.1| TIM-barrel protein, yjbN family [Roseobacter sp. CCS2]
Length = 331
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 172/301 (57%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S+H LYTEM+ A +I+ G+ DR L F ++ P+ LQ
Sbjct: 12 LSVAPMMDWTDRHCRYLHRLMSRHTLLYTEMVTAPAVIH--GDRDRLLGFHVDEQPLALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A +A Y Y EINLNCGCPS +V G FG LM P V + ++ +
Sbjct: 70 LGGSDPAQLAEAARIAEGYGYAEINLNCGCPSDRVQS-GHFGAVLMESPVLVADCVAAMI 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A VPV+VKCRIGVDD D + L DF+ +VS+ R F +H+RKA L G+SP ENR +
Sbjct: 129 AAVRVPVTVKCRIGVDDQDPHVILPDFLARVSAAGVDR-FSVHARKAWLQGLSPKENREV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + FP L ++NGGI T+D+ L +G VM+GRAAY P L
Sbjct: 188 PPLNYDLVMKMKGLFPHLHVSINGGIATLDQAEDFLARGLDGVMIGRAAYHTPADILLQA 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG P T VV Y + + + V + +L F PG ++
Sbjct: 248 DARIYGDPRE-RTAEDVVHLMLPY----IADHIAQGGRLGQVTRHMLGLFQGRPGARGWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>gi|387872936|ref|YP_005804323.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
gi|283480036|emb|CAY75952.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
Length = 332
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 185/330 (56%), Gaps = 17/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +++ LY+EM+ II+ +G+ +LAFS E+HP+ LQ
Sbjct: 11 FSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGD---YLAFSSEEHPVALQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y EINLN GCPS +V +G FG LM + + V + + +
Sbjct: 68 LGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMR 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY LCDFI+ VS FIIH+RKA L+G+SP ENR I
Sbjct: 127 DVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGG+ ++ E L+ VM+GR AYQNP L V
Sbjct: 187 PPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQY-LDGVMMGREAYQNPGL-LAQV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G S VV Y + L N ++ V + +L F PG ++
Sbjct: 245 DRELFGCTSPAADPIAVVRSMYPYIERELA----NGTYLGHVTRHMLGLFQGIPGARQWR 300
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R KA A + + S + E + A
Sbjct: 301 RYLSENAHKAGAGIEVVEKALSMVAEKVPA 330
>gi|429328830|gb|AFZ80590.1| tRNA-dihydrouridine synthase, putative [Babesia equi]
Length = 432
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 190/316 (60%), Gaps = 17/316 (5%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPI 67
P +APM+D T +R RL+++ + L+TEM A +++ + + +L F ++PI
Sbjct: 77 PLVQIAPMLDVTYREFRQFMRLLTQKSQLWTEMFTASALVHAPETVVSDWLKFGSNENPI 136
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
V Q+GG+ +D L +A L + Y E+NLN GCPSP+V+G GCFG +LM + V + +
Sbjct: 137 VAQLGGNCIDTLIQAGRLLKNHGYTELNLNVGCPSPRVSGKGCFGAALMKTKELVRDIVH 196
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ + VSVK R+GVD+ DSY + DF+ VS S HFI+HSRKA L G++P +N
Sbjct: 197 TLRRELELEVSVKHRLGVDNLDSYEFVKDFVSTVSE-SGCNHFIVHSRKAWLRGVNPKQN 255
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL------RKGAHH----VMVGR 237
R +PPL+YE Y L RDFPDL FT+NGG T++++ AL G H VMVGR
Sbjct: 256 RKVPPLEYEKVYRLQRDFPDLKFTINGGFKTIEDIKNALDSENKDSHGVSHSLNGVMVGR 315
Query: 238 AAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP 295
A Y+NP L +VD AIYG P + TRR ++E Y Y D + + ++ ++KP
Sbjct: 316 ATYENPC-MLANVDKAIYGVENPPTCATRRILLESYADYIDKNVD--DTHEMNICMIVKP 372
Query: 296 LLHFFHSEPGNGLFKR 311
+L F+ E GN ++++
Sbjct: 373 ILGVFYGEYGNRIYRQ 388
>gi|389877897|ref|YP_006371462.1| tRNA-dihydrouridine synthase A [Tistrella mobilis KA081020-065]
gi|388528681|gb|AFK53878.1| tRNA-dihydrouridine synthase A [Tistrella mobilis KA081020-065]
Length = 330
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 179/301 (59%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+VAPMMDWTD H R R IS+ A L+TEM+ +IY G+ R LA+ P +HP+V+Q
Sbjct: 8 IAVAPMMDWTDRHDRYFLRQISRRAVLFTEMITTGALIY--GDAARHLAYDPSEHPVVVQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA A +A YDEINLNCGCPS +V G FG LM +P+ V E M+ +
Sbjct: 66 LGGSDPKDLATAARIAADAGYDEINLNCGCPSDRVQS-GRFGACLMAEPELVAECMAAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +VPV+VKCRIG+DD D L F+ V+S + F +H+RKA L G+SP ENR I
Sbjct: 125 AAVDVPVTVKCRIGIDDQDETETLFRFVETVAS-AGVGVFYVHARKAWLKGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y +AL R PDL +NGG++T+D+ + G VM GRAAY +P Y L V
Sbjct: 184 PPLNYPLVHALKRARPDLEILINGGLSTLDQAGVEIGGGLDGVMFGRAAYHDP-YILAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
DT YG + R ++ E+ Y +A + G N + + + +L F PG ++
Sbjct: 243 DTRFYGETTRIPDRFEIAERMLPYIEAEC-SRGTN---LIAITRHMLGLFQGLPGARAYR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|212710291|ref|ZP_03318419.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|422020548|ref|ZP_16367086.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
gi|212687098|gb|EEB46626.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|414101185|gb|EKT62786.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 341
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/245 (50%), Positives = 159/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K+ LYTEM+ IIY +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGD---YLAYSEEEHPVSLQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM D + V + + +
Sbjct: 81 LGGSDPVALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC+FI VS+ FIIH+RKA L+G+SP ENR I
Sbjct: 140 DVVSIPVTVKTRIGIDEQDSYEFLCEFIDTVSTKGDCEMFIIHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E L K VMVGR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPHLTMAINGGIKTLEEAKEHL-KYLDGVMVGREAYQNP-SILTAV 257
Query: 251 DTAIY 255
D ++
Sbjct: 258 DNQLF 262
>gi|425066300|ref|ZP_18469420.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
gi|404381885|gb|EJZ78350.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
Length = 327
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 190/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ I++ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAILHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V +S +
Sbjct: 70 LGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVANCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLHMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|209885665|ref|YP_002289522.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|337740745|ref|YP_004632473.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|386029762|ref|YP_005950537.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM4]
gi|209873861|gb|ACI93657.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
gi|336094830|gb|AEI02656.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM4]
gi|336098409|gb|AEI06232.1| tRNA-dihydrouridine synthase A [Oligotropha carboxidovorans OM5]
Length = 332
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 185/328 (56%), Gaps = 17/328 (5%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P FSVAPMMDWTD H R R +++ A LYTEM+ +I+ G+ +R L F +HP+
Sbjct: 7 PIFSVAPMMDWTDRHCRVFHRALTRRALLYTEMVTTGAVIH--GSRERLLGFDACEHPVA 64
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGSN +LA++ ++ + YDEINLN GCPS +V G FG LM +P+ VGE +
Sbjct: 65 LQLGGSNPRDLAESAKIGEGFGYDEINLNVGCPSDRVQ-DGRFGACLMAEPQLVGECVVA 123
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ A VPV+VKCRIG+DD D L D V + + I+H+RKA L G+SP ENR
Sbjct: 124 MKAAVRVPVTVKCRIGIDDQDPERALDDLARSVVT-AGADALIVHARKAWLQGLSPKENR 182
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+PPL Y+ Y L PD+T +NGGI +++E L+ VM+GRAAYQ PW L
Sbjct: 183 NVPPLDYDRVYRLKAAMPDMTIAINGGIASIEEARGHLQH-VDGVMLGRAAYQEPWRLLA 241
Query: 249 HVDTAIYGAPSSGLTRRQVVEKY--QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
VD ++ AP + + +E I + GT + + + ++ FH G
Sbjct: 242 -VDPELFDAPPPHASMHEAIETLFPYIEKERARGT------RLHSITRHMVGAFHGVAGA 294
Query: 307 GLFKRKADAAFQTCKTVKSFLEETIVAI 334
F+R A +TC ++ ++E A+
Sbjct: 295 RAFRR---ALAETCVKPEAGIDELRAAL 319
>gi|393778283|ref|ZP_10366562.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
gi|392714749|gb|EIZ02344.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
Length = 362
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 179/305 (58%), Gaps = 10/305 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPM+DWTD H R R +S+H WLYTEM+ +++ G++ R LAF +HP+
Sbjct: 35 PRRVSVAPMLDWTDRHCRYFHRQLSRHTWLYTEMVTTGALLH--GDVARHLAFDAHEHPV 92
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA A +L + Y EINLNCGCPS +V G FG LM +P V + +
Sbjct: 93 ALQLGGSEPADLAAAAKLGEQWGYAEINLNCGCPSERVQ-RGAFGACLMAEPALVADGVR 151
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D + Y + DF+ V+ + FI+H+R A+L G+SP EN
Sbjct: 152 AMRDAVSIPVTVKHRIGIDAVEEYAFVRDFVGTVAQ-AGCNVFIVHARNAILKGLSPKEN 210
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPLKYE Y L RDFPDL +NGGI+T++ ++A LR VM+GR AY NP++ L
Sbjct: 211 REIPPLKYEVAYQLKRDFPDLEIVINGGIDTLEAMDAHLRH-VDGVMIGREAYHNPYF-L 268
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D YGA TR V ++ Y +G+ G H V + +L + G
Sbjct: 269 AAFDERFYGAAEPLPTRETVEDRMLDYLARWVGSGG----HAAAVTRHMLGLYRGVGGAR 324
Query: 308 LFKRK 312
++R+
Sbjct: 325 GWRRE 329
>gi|261346564|ref|ZP_05974208.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565268|gb|EFB70803.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
Length = 341
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIFGKGD---YLAYSEEEHPVSLQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM D + V + + +
Sbjct: 81 LGGSDPAALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMADAQLVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS+ F+IH+RKA L+G+SP ENR I
Sbjct: 140 DVVSIPVTVKTRIGIDEQDSYEFLCDFIDTVSTKGDCDTFVIHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L K VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHL-KYLDGVMMGREAYQNP-SILTAV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ + + V + Y + L +N ++ + + +L F PG ++
Sbjct: 258 DNQLFDETMPIVDNIEAVRRMYPYIEKEL----SNGAYLGHMTRHMLGIFQGIPGARQWR 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|307247131|ref|ZP_07529183.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251674|ref|ZP_07533579.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856380|gb|EFM88531.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860871|gb|EFM92879.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 329
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 189/337 (56%), Gaps = 19/337 (5%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L +
Sbjct: 4 LMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P ++P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM
Sbjct: 61 DPSENPVALQLGGSDPAQLANCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKAD 119
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+
Sbjct: 120 LVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLS 177
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP +NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AY
Sbjct: 178 GLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAY 236
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNP LG +D+ I+G +T R+ VEK Y + ++ +++ +L F
Sbjct: 237 QNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY----IAVQTQKGVYLNHIVRHMLGAF 291
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
+ G ++R K A + + SF++E+
Sbjct: 292 QNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 328
>gi|403059923|ref|YP_006648140.1| yjbN family TIM-barrel protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807249|gb|AFR04887.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 340
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 179/307 (58%), Gaps = 22/307 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LCDFI V+ FI+H+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYGAPSSGLTRRQVVE------KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D ++G ++ VV ++++ G A LG + + +L F P
Sbjct: 258 DRELFGVDTATPDLAGVVRAMYPYIEHELSGGASLG----------HITRHMLGMFQGIP 307
Query: 305 GNGLFKR 311
G ++R
Sbjct: 308 GARQWRR 314
>gi|385786265|ref|YP_005817374.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
gi|310765537|gb|ADP10487.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
Length = 331
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 185/330 (56%), Gaps = 17/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +++ LY+EM+ II+ +G+ +LAFS E+HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGD---YLAFSSEEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y EINLN GCPS +V +G FG LM + + V + + +
Sbjct: 67 LGGSDPAALAHCAKLAEQRGYQEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY LCDFI+ VS FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSVPVTVKTRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGG+ ++ E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPHLTLSINGGVKSLAEAKIHLQH-LDGVMMGREAYQNPGL-LAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G S VV Y + L N ++ V + +L F PG ++
Sbjct: 244 DRELFGCTSPAADPIAVVRSMYPYIERELA----NGTYLGHVTRHMLGLFQGIPGARQWR 299
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R KA A + + S + + +A
Sbjct: 300 RYLSENTHKAGAGVEVVEKALSLVADKAIA 329
>gi|197105805|ref|YP_002131182.1| tRNA-dihydrouridine synthase A [Phenylobacterium zucineum HLK1]
gi|196479225|gb|ACG78753.1| tRNA-dihydrouridine synthase [Phenylobacterium zucineum HLK1]
Length = 343
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 188/350 (53%), Gaps = 22/350 (6%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
++Y F++APMMDWTD H R L R +S A LYTEML +++ G+ +R LA+ P
Sbjct: 2 QKYQAHRFAIAPMMDWTDRHCRVLHRTLSSRALLYTEMLTTGAVLH--GDRERLLAYDPV 59
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS LA A + A YDEINLN GCPS +V G FG LM +P+ V
Sbjct: 60 EHPVALQLGGSEPAELAAAARIGEAEGYDEINLNVGCPSDRVQS-GRFGACLMREPELVA 118
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
E M+ + A VPV+VKCRIGVDD D L + + T F++H+RKA L G+S
Sbjct: 119 ECMAAMGAAVKVPVTVKCRIGVDDQDPEESLFTLVDLCAEAGVT-SFVVHARKAWLKGLS 177
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPL Y + L + PDLT +NGGI ++DE LR VM+GRAAY P
Sbjct: 178 PKENRDVPPLDYPLVWRLKAERPDLTIVINGGIGSLDEAEDHLRH-VDGVMLGRAAYHTP 236
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFH 301
LG D I+G ++ + VE ++ Y G GT H+ + + +L FH
Sbjct: 237 -DLLGQADARIFGEDRR-VSPFEAVEAFRPYVAGQLARGT------HLAAMTRHMLGLFH 288
Query: 302 SEPGNGLFKR-------KADAAFQTCKTVKSFLEETIVAIPDSVLDSPIE 344
PG ++R KA A + + + E + + L +E
Sbjct: 289 GVPGARAWRRILTVDGVKAGAGLEVIDRALAAVSERASGLQEQRLAGGLE 338
>gi|444365932|ref|ZP_21166033.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
gi|443605311|gb|ELT73169.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
Length = 328
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 177/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P + PI LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSESPIALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ ++ TR + + Y A L GTY + +++ L + PG ++R
Sbjct: 235 GSTAAVPTREEAEAQLIAYCAAELKRGTY------LGAIVRHALGLYRGMPGARGWRR 286
>gi|422110551|ref|ZP_16380525.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378640|emb|CBX22711.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 336
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 167/272 (61%), Gaps = 6/272 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAVEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FPDL +NGGI T +E A + VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPDLEIIINGGI-TANEAIAGHLQHVDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V+ Y A
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQLLYTYSQA 274
>gi|307256171|ref|ZP_07537958.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865352|gb|EFM97248.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 334
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 189/337 (56%), Gaps = 19/337 (5%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L +
Sbjct: 9 LMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEY 65
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P ++P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM
Sbjct: 66 DPSENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKAD 124
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+
Sbjct: 125 LVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLS 182
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP +NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AY
Sbjct: 183 GLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKQHL-AFVDGVMVGREAY 241
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNP LG +D+ I+G +T R+ VEK Y + ++ +++ +L F
Sbjct: 242 QNP-SLLGEIDSQIFGENQPLVTAREAVEKMLPY----IAVQTQKGVYLNHIVRHMLGAF 296
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
+ G ++R K A + + SF++E+
Sbjct: 297 QNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 333
>gi|190149417|ref|YP_001967942.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262734|ref|ZP_07544361.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914548|gb|ACE60800.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871879|gb|EFN03596.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 329
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 190/339 (56%), Gaps = 23/339 (6%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L +
Sbjct: 4 LMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P ++P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM
Sbjct: 61 DPSENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKAD 119
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+
Sbjct: 120 LVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLS 177
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP +NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AY
Sbjct: 178 GLSPKQNREIPPLDYECVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAY 236
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLH 298
QNP LG +D+ I+G +T R+ VEK Y G Y N+ +++ +L
Sbjct: 237 QNP-SLLGEIDSQIFGENQPLVTAREAVEKMLPYIAAQTQKGVYLNH------IVRHMLG 289
Query: 299 FFHSEPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
F + G ++R K A + + SF++E+
Sbjct: 290 AFQNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 328
>gi|119469148|ref|ZP_01612132.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
gi|119447400|gb|EAW28668.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
Length = 329
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 189/326 (57%), Gaps = 11/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ
Sbjct: 15 FSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNQHEGPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 72 LGGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMK 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +
Sbjct: 131 NEVSIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREV 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +D+P L ++NGG+ TV++ L+ VMVGR AY NP + L V
Sbjct: 190 PPLDYPRVYQLKKDYPQLDLSINGGVKTVEQSLEHLQY-IDGVMVGREAYSNP-FMLNEV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG ++ TR VV Y + + G N H V + +L F +PG F+
Sbjct: 248 DEKIYGDTANTQTRHDVVRSMYDYIEEEM-RLGANFWH---VARHMLGIFQGQPGARGFR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R + S +++ + +P+
Sbjct: 304 RHLSENGHGKQADLSVMDKALSFVPE 329
>gi|67921570|ref|ZP_00515088.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
gi|67856682|gb|EAM51923.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
Length = 334
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 178/302 (58%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD H+R L R I++H LYTEM+ + I + G+ + L FSPE+ P+ LQ
Sbjct: 4 LSVAPMMDYTDRHFRYLMRQITRHTLLYTEMIVSAAI--KHGDRPKLLDFSPEEKPLSLQ 61
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+ +A + YDEINLN GCPS +V G FG LM P+ V + + +
Sbjct: 62 LGGDNPQELAECAIIAEDWGYDEINLNVGCPSDRVQS-GHFGACLMAKPELVAQCVQKMQ 120
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD DSY ++ F+ V+ R F IH+RKA L G+SP ENR I
Sbjct: 121 QGVNIPVTVKQRIGIDDQDSYEEMARFVAIVAEAGCQR-FTIHARKAWLKGLSPKENRNI 179
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L +DFP L +NGGI +++V+ L K VM+GRAAY NP Y V
Sbjct: 180 PPLRYQDVYRLKQDFPHLLIEINGGITNLEQVDNHL-KIVDAVMIGRAAYDNP-YLFATV 237
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLF 309
D IY TR +++EK Y D + +R H + + + LL F PG +
Sbjct: 238 DRDIYQEDIIPATRHEIIEKMLPYID-----HWVSRGHKLHRISRHLLAMFAGIPGTKAW 292
Query: 310 KR 311
KR
Sbjct: 293 KR 294
>gi|414072094|ref|ZP_11408047.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
gi|410805440|gb|EKS11453.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
Length = 329
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 189/326 (57%), Gaps = 11/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ
Sbjct: 15 FSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNKHEGPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 72 LGGSDPKALARCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMK 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +
Sbjct: 131 SEVTIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREV 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +D+P L +LNGG+ T+++ L+ VM+GR AY NP + L V
Sbjct: 190 PPLDYPRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG ++ +R VV Y + + G N H + + +L F +PG F+
Sbjct: 248 DEKIYGDTANTQSRHDVVRSMYSYIEEEM-RLGANFWH---IARHMLGIFQGQPGARGFR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R + + S +++ + +P+
Sbjct: 304 RHLSESGHGKQADLSVMDKALSFVPE 329
>gi|407692865|ref|YP_006817654.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
gi|407388922|gb|AFU19415.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
Length = 323
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/334 (41%), Positives = 188/334 (56%), Gaps = 23/334 (6%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYRGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDL---LEYDPSE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL YE Y L RDFP L ++NGGI TVDE+ L VMVGR AYQNP
Sbjct: 178 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTVDEIKQHL-AFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHS 302
LG +D+ I+ +T R+ VEK Y +A G Y N+ +++ +L F +
Sbjct: 236 SLLGEIDSQIFDENRPLVTAREAVEKMLPYIEAQTQKGVYLNH------IVRHMLGAFQN 289
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLEE 329
G ++R K A + + SF++E
Sbjct: 290 CKGARQWRRHLSENATKQGAGVEVVEQALSFVQE 323
>gi|303249850|ref|ZP_07336054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251970|ref|ZP_07338141.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649400|gb|EFL79585.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302651417|gb|EFL81569.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 325
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 187/333 (56%), Gaps = 19/333 (5%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEYDPSE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLANCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AYQNP
Sbjct: 178 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LG +D+ I+G +T R+ VEK Y + ++ +++ +L F +
Sbjct: 236 SLLGEIDSQIFGENRPLVTAREAVEKMLPY----IAVQTQKGVYLNHIVRHMLGAFQNCK 291
Query: 305 GNGLFKR-------KADAAFQTCKTVKSFLEET 330
G ++R K A + + SF++E+
Sbjct: 292 GARQWRRHLSENATKQGAGVEVVEQALSFVQES 324
>gi|359298827|ref|ZP_09184666.1| tRNA-dihydrouridine synthase A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 324
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 179/303 (59%), Gaps = 16/303 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R ++H LYTEM+ A II+ + +L LAF P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDL---LAFDPAENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y EINLN GCPS +V +G FG LM V + M +
Sbjct: 67 LGGSDPTQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMGKADLVADCMKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI KV S + FI+H+RKA L+G+SP ENR I
Sbjct: 126 DAVDIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--QDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L + VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPHLNISINGGIKTIDEIKTHL-QFVDGVMVGREAYQNP-SLLGAI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D+ I+G +T + VEK Y + L G Y N+ +++ +L F G
Sbjct: 242 DSQIFGENRPLVTAKAAVEKMFPYIEQQLSQGVYLNH------IVRHMLGAFQQCKGARQ 295
Query: 309 FKR 311
++R
Sbjct: 296 WRR 298
>gi|32034537|ref|ZP_00134701.1| COG0042: tRNA-dihydrouridine synthase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 329
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 189/337 (56%), Gaps = 19/337 (5%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
++ Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L +
Sbjct: 4 LMQNQFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEY 60
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
P ++P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM
Sbjct: 61 DPSENPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKAD 119
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V + + + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+
Sbjct: 120 LVADCIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLS 177
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP +NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AY
Sbjct: 178 GLSPKQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAY 236
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
QNP LG +D+ I+G +T R+ VEK Y + ++ +++ +L F
Sbjct: 237 QNP-SLLGEIDSQIFGENRPLVTAREAVEKMLPY----IAVQTQKGVYLNHIVRHMLGAF 291
Query: 301 HSEPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
+ G ++R K A + + SF++E+
Sbjct: 292 QNCKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 328
>gi|402306879|ref|ZP_10825912.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
gi|400373723|gb|EJP26650.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
Length = 324
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 180/303 (59%), Gaps = 16/303 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R ++H LYTEM+ A II+ + +L LAF P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDL---LAFDPAENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y EINLN GCPS +V +G FG LM V + M +
Sbjct: 67 LGGSDPTQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMGKADLVADCMKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI KV S + FI+H+RKA L+G+SP ENR I
Sbjct: 126 DAVDIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--QDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPHLNISINGGIKTIEEIKTHL-QFVDGVMVGREAYQNP-SLLGAI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D+ I+G +T ++ VEK Y + L G Y N+ +++ +L F G
Sbjct: 242 DSQIFGENQPLVTAKEAVEKMFPYIEQQLLQGVYLNH------IVRHMLGAFQQCKGARQ 295
Query: 309 FKR 311
++R
Sbjct: 296 WRR 298
>gi|417854208|ref|ZP_12499530.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218392|gb|EGP04165.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 327
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 190/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYARVYQLKRDFPHLHMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>gi|241758541|ref|ZP_04756659.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
gi|241321314|gb|EER57468.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
Length = 334
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 155/233 (66%), Gaps = 4/233 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD HYR +AR I+++AWLY+EM+ + ++Y G+ DRFL+F+ + P+ LQ
Sbjct: 11 LSVAPMLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVY--GDKDRFLSFNEGEQPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA A + A Y Y+E+NLNCGCPSP+V G FG LM D V + ++ +
Sbjct: 69 LGGSDPHDLAIAAKAAETYGYNEVNLNCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + R FI+H+R A L+G+SP ENR +
Sbjct: 128 DVVEIPVTVKHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLSPKENREV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PPLKYEY Y L ++FPDL +NGGI T +E+ L K VM+GR AY NP
Sbjct: 188 PPLKYEYVYRLKQEFPDLEILINGGITTNEEIAEHL-KFVDGVMIGREAYHNP 239
>gi|399544116|ref|YP_006557424.1| tRNA-dihydrouridine synthase A [Marinobacter sp. BSs20148]
gi|399159448|gb|AFP30011.1| tRNA-dihydrouridine synthase A [Marinobacter sp. BSs20148]
Length = 400
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 18/305 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPMMDWT HYR +AR +SKHA LYTEM+ +I+ G+ +RFL + ++P+ LQ
Sbjct: 75 FCVAPMMDWTTPHYRYMARQLSKHAMLYTEMVTTGALIH--GDTERFLHHNAAEYPLALQ 132
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA LA + + E+NLN GCPS KV + G LM P V E +
Sbjct: 133 LGGSNAGELAHCANLAQQFGFSEVNLNVGCPSDKVQNN-MIGACLMGHPDIVAEGFKAMQ 191
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T++PV+VK RIG++ +S+++LC FI V++ + + FI+H+R A+L G+SP ENR +
Sbjct: 192 AATDIPVTVKHRIGINGRESWDELCGFIETVAA-AGCKTFIVHARIAVLEGLSPKENRDV 250
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLG 248
PPLKY++ Y L +P L +NGGI TV+E + L AH VM+GR AY NPW L
Sbjct: 251 PPLKYDWVYRLKARYPQLEIIINGGIKTVNECHQHL---AHSDGVMLGREAYHNPW-ILT 306
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGN 306
VD+ +G P ++R + +E + + L G Y + + + +L FH PG
Sbjct: 307 QVDSEFFGEPEKTVSRHEALEAMYPFIEQELARGVY------LGHISRHMLGLFHGIPGG 360
Query: 307 GLFKR 311
F+R
Sbjct: 361 RQFRR 365
>gi|254282686|ref|ZP_04957654.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
gi|219678889|gb|EED35238.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
Length = 311
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 177/295 (60%), Gaps = 10/295 (3%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R RL+++ A LYTEM+ +++ G++ R L F+ +HPI LQ+GGSN
Sbjct: 1 MDWTDRHCRYFWRLLTRRARLYTEMVTTGALLH--GDVARHLQFNDCEHPIALQLGGSNP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
+ LA +A + YDE+NLNCGCPS +V +G FG LM + + V + ++ + + +P
Sbjct: 59 EELASCARMAEDWGYDEVNLNCGCPSDRVQ-NGRFGACLMAEAELVRDCVAAMCDASALP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIG+D +SYN+L DF+ V+S R FI+H+RKA L G+SP ENR IPPL Y
Sbjct: 118 VTVKHRIGIDHQESYNELRDFVGTVAS-GGARVFIVHARKAWLQGLSPKENREIPPLNYP 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
+ Y L +DFP LT LNGG+ + + L K VM+GRAAYQNPW L VD A++G
Sbjct: 177 WVYRLKQDFPHLTIVLNGGVTDIPACESHLGK-VDGVMLGRAAYQNPWL-LASVDQALFG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G +R V+E Y D L G + V + +L + PG F+R
Sbjct: 235 DAPRGQSRASVLEALMPYIDRELARGGR----LNHVTRHVLGLYQGIPGGKRFRR 285
>gi|126207634|ref|YP_001052859.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975602|ref|YP_001651195.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307260603|ref|ZP_07542295.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126096426|gb|ABN73254.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875703|gb|ABY68751.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306869680|gb|EFN01465.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 325
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 187/333 (56%), Gaps = 19/333 (5%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEYDPSE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AYQNP
Sbjct: 178 KQNREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LG +D+ I+G +T R+ VEK Y + ++ +++ +L F +
Sbjct: 236 SLLGEIDSQIFGENRPLVTAREAVEKMLPY----IAVQTQKGVYLNHIVRHMLGAFQNCK 291
Query: 305 GNGLFKR-------KADAAFQTCKTVKSFLEET 330
G ++R K A + + SF++E+
Sbjct: 292 GARQWRRHLSENATKQGAGVEVVEQALSFVQES 324
>gi|333374810|ref|ZP_08466644.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
gi|332974563|gb|EGK11483.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
Length = 357
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 181/302 (59%), Gaps = 8/302 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD HYR +AR I++H WLYTEM+ A I+Y G+ DRFL + ++P+ LQ
Sbjct: 29 LSVAPMLDWTDRHYRHMARQITRHTWLYTEMINAGAIVY--GDPDRFLQRNECENPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A + A Y+YDEINLNCGCPSP+V G FG LMLD V + ++ +
Sbjct: 87 LGGSEPTLLAQAAQKAAQYSYDEINLNCGCPSPRVQ-KGAFGACLMLDVNLVADCLNAMQ 145
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A +P+++K RIG+D Y L DF+ + + R FI+H+R A L+G+SP ENR
Sbjct: 146 DAVPAIPITIKHRIGIDKQTEYQPLADFVGSLHDKTACRTFIVHARNAWLDGLSPKENRE 205
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
IPPL+Y++ Y L ++FPDL +NGG+ T ++ L+ VM+GR AY NP Y +
Sbjct: 206 IPPLRYDFVYRLKQEFPDLEIIINGGVQTNTQIAEHLQH-VDGVMMGREAYHNP-YIMHD 263
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
DT YG TR Q+ + Q+Y A +R +++ L H G ++
Sbjct: 264 WDTLFYGETQPAPTREQITQ--QLYNYATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIW 321
Query: 310 KR 311
+R
Sbjct: 322 RR 323
>gi|421480048|ref|ZP_15927700.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
gi|400221841|gb|EJO52267.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
Length = 328
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 178/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAQAGCST-FIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ + TR + + Y A L GTY + +++ L + PG ++R
Sbjct: 235 GSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHALGLYRGVPGARGWRR 286
>gi|118602457|ref|YP_903672.1| tRNA-dihydrouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567396|gb|ABL02201.1| tRNA-U16,U17-dihydrouridine synthase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 322
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 188/322 (58%), Gaps = 14/322 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R RLISK+ L+TEM+ A I+Y GN +R L F+ +HP+VLQ
Sbjct: 7 FSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILY--GNKNRLLDFNVCEHPLVLQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +A+A ++A + Y+EIN+N GCPS +V FGV LM P+ V + + +
Sbjct: 65 LGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSN-FGVCLMQTPQVVAQCVDAMR 123
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VP++VK RIGVD+ DSY++L +F+ V S S + +IH+RKA L G+SP ENR++
Sbjct: 124 QMVDVPITVKSRIGVDNMDSYDELVNFVATVES-SGCDNLVIHARKAWLKGLSPKENRSV 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
P L YE Y + RDFP L +NGGI ++ ++L+ H VM+GRA Y P Y L
Sbjct: 183 PKLNYERVYQIKRDFPHLAIGINGGIM---DMESSLQHLEHVDSVMLGRAVYHQP-YLLR 238
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD IY SS L+R QV+ + Y + N +R + + + +H +
Sbjct: 239 KVDGLIYQKKSSILSREQVLLAFIEY----MKVQHANSVLIRSMTRHIFGLYHGQKNAKK 294
Query: 309 FKRKADAAFQTCKTVKSFLEET 330
FKR + + +LE T
Sbjct: 295 FKRLLSGKIVKFEHLYEWLEYT 316
>gi|402566633|ref|YP_006615978.1| yjbN family TIM-barrel protein [Burkholderia cepacia GG4]
gi|402247830|gb|AFQ48284.1| TIM-barrel protein, yjbN family [Burkholderia cepacia GG4]
Length = 328
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 176/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYQLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
GA + TR + + Y A L GTY + +++ L + PG ++R
Sbjct: 235 GATAEAPTREEAEAQLIEYCAAELKRGTY------LGAIVRHALGLYRGAPGARGWRR 286
>gi|408375603|ref|ZP_11173265.1| tRNA-dihydrouridine synthase A [Alcanivorax hongdengensis A-11-3]
gi|407764520|gb|EKF72995.1| tRNA-dihydrouridine synthase A [Alcanivorax hongdengensis A-11-3]
Length = 310
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 187/310 (60%), Gaps = 17/310 (5%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWT +R L RLI++H LYTEM+ A+ I++ G+ DRFL+++ E+HP+ LQ+GGS+
Sbjct: 1 MMDWTTRDFRFLTRLITRHTLLYTEMVVAQAILH--GDRDRFLSYNDEEHPLALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+AT +A+ Y YDEINLN GCPS +V G G LM +P+ V + +S + A T
Sbjct: 59 PGQLAQATAIASDYGYDEINLNVGCPSDRVQ-QGKIGAVLMAEPQRVADCVSAMQAATCA 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD D Y L F+ + + T IH+RKA+L+G+SP ENR IPPL Y
Sbjct: 118 PVTVKTRIGIDDQDDYAFLHRFVEHMQAAGCTS-LTIHARKAILSGLSPKENREIPPLIY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ YA+ + FP L LNGG+ ++ +V L + VM+GR AYQNP++ L D ++
Sbjct: 177 QRAYAIKQAFPQLEVILNGGVKSLQDVADHL-EDVDGVMIGREAYQNPYF-LAQADALLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR---- 311
P +R+QV E + Y + G+ H + ++ +L F +PG F+R
Sbjct: 235 DDPHPIPSRQQVAEAFIPYLERRFAA-GH---HPKHALRHILSLFQGQPGARAFRRHLSE 290
Query: 312 ---KADAAFQ 318
KADA Q
Sbjct: 291 NMHKADATPQ 300
>gi|307244957|ref|ZP_07527054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253910|ref|ZP_07535762.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258364|ref|ZP_07540105.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854122|gb|EFM86330.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863114|gb|EFM95056.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867548|gb|EFM99395.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 325
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 188/335 (56%), Gaps = 23/335 (6%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYRGRFSVAPMLDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDL---LEYDPSE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y EINLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NR IPPL YE Y L RDFP L ++NGGI T++E+ L VMVGR AYQNP
Sbjct: 178 KQNREIPPLDYECVYQLKRDFPHLNISINGGIKTIEEIKRHL-AFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIY--GDAILGTYGNNRPHVRDVMKPLLHFFHS 302
LG +D+ I+G +T R+ VEK Y G Y N+ +++ +L F +
Sbjct: 236 SLLGEIDSQIFGENQPLVTAREAVEKMLPYIAAQTQKGVYLNH------IVRHMLGAFQN 289
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
G ++R K A + + SF++E+
Sbjct: 290 CKGARQWRRHLSENATKQGAGVEVVEQALSFVQES 324
>gi|251793819|ref|YP_003008551.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|422337222|ref|ZP_16418194.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
gi|247535218|gb|ACS98464.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|353345774|gb|EHB90065.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
Length = 327
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 189/328 (57%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F++APM+DWT H R R S+H LYTEM+ A+ II+ + + L F +HP+ LQ
Sbjct: 13 FAIAPMLDWTTRHCRYFHRQFSRHTLLYTEMVTAQAIIHAKYD---HLDFDAAEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM P V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMAKPNLVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+DD DSY+ L +F+ V + R FI+H+RKA L+G+SP +NR I
Sbjct: 129 SAVQIPVTVKTRIGIDDFDSYDFLYNFVQTVKQVG-CREFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L YE Y L RDFPDL ++NGGI T++E+ L+ VMVGR AYQNP LGH+
Sbjct: 188 PLLDYERVYQLKRDFPDLLISINGGIKTIEEIQQHLQH-VDGVMVGREAYQNP-SLLGHI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T RQ V + Y ++ L G Y N+ +++ +L F + G
Sbjct: 246 DQALFDPNAPIITPRQAVARMLPYIESQLSQGVYLNH------IVRHMLGAFQNCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R K A + +T F+EE
Sbjct: 300 WRRYLSENAYKEGAGIEMVETALGFVEE 327
>gi|359450016|ref|ZP_09239485.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
gi|358044183|dbj|GAA75734.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
Length = 324
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ
Sbjct: 10 FSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNQHEGPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 67 LGGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFI---YKVSSLSPTRHFIIHSRKALLNGISPAEN 187
++PV+VK RIG+D+ DSY LC I YKV FIIH+RKA LNG+SP EN
Sbjct: 126 NEVSIPVTVKTRIGIDEQDSYEFLCALIEASYKVG----CDDFIIHARKAWLNGLSPKEN 181
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL Y Y L +D+P L ++NGG+ T+++ L+ VMVGR AY NP + L
Sbjct: 182 REVPPLDYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQY-IDGVMVGREAYSNP-FML 239
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD IYG ++ TR VV Y + + G N H V + +L F +PG
Sbjct: 240 NEVDEKIYGDTANTQTRHDVVRSMYDYIEEEM-RLGANFWH---VARHMLGIFQGQPGAR 295
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPD 336
F+R + S +++ + +P+
Sbjct: 296 GFRRHLSENGHGKQADLSVMDKALSFVPE 324
>gi|88858983|ref|ZP_01133624.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas tunicata D2]
gi|88819209|gb|EAR29023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas tunicata D2]
Length = 337
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 189/327 (57%), Gaps = 19/327 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H RT R +++HA LYTEM+ IIY +G+ +L F + P+ LQ
Sbjct: 22 FSIAPMLDWTDRHCRTFHRKLTQHAVLYTEMITTGAIIYGRGD---YLHFGQHEQPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA + A+ Y EINLN GCPS +V +G FG LM +P V + ++ +
Sbjct: 79 LGGSDPAALALCAKQADERGYQEINLNVGCPSDRVQ-NGRFGACLMAEPNLVAQCVAAMK 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
TN+PV+VK RIG+DD DSY LC I ++ FIIH+RKA L+G+SP ENR I
Sbjct: 138 EQTNMPVTVKTRIGIDDQDSYEFLCALIDACIAVD-CNDFIIHARKAWLSGLSPKENRDI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +D+P ++NGG+ T+++ A L + VM+GR AY NP Y L V
Sbjct: 197 PPLDYERVYQLKKDYPQTHISINGGVKTIEQSLAHL-QFIDGVMMGREAYANP-YLLTQV 254
Query: 251 DTAIYGAPSSG-LTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D+AIYG S+ L+R Q V Y +A + T G + H V + +L F PG F
Sbjct: 255 DSAIYGDASTPVLSRHQAVRAMYDYFEAEM-TGGASFWH---VARHMLGIFQGVPGGRAF 310
Query: 310 KR-------KADAAFQTCKTVKSFLEE 329
+R K DA + F+ E
Sbjct: 311 RRHLSENGHKKDADISVMEQALGFVAE 337
>gi|253991388|ref|YP_003042744.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
gi|253782838|emb|CAQ86003.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
Length = 341
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 180/312 (57%), Gaps = 14/312 (4%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
++ + P FSVAPM+DWTD H R RL+SK LYTEM+ II+ +GN +LA++
Sbjct: 15 ISNKLWPGRFSVAPMLDWTDRHCRYFHRLLSKQTLLYTEMVTTGAIIHGKGN---YLAYN 71
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+GGS+ LA ++A YDEINLN GCPS +V +G FG LM + K
Sbjct: 72 EEEHPLALQLGGSDPQALAHCAKIAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAKL 130
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V + + + NVPV+VK RIG+D+ DSY LCDFI V S F IH+RKA L+G
Sbjct: 131 VADCVKAMQDVVNVPVTVKTRIGIDEQDSYEFLCDFIDTVVQHSGCNIFTIHARKAWLSG 190
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL Y Y L +DFP LT +NGGI +++E L+ VM+GR AYQ
Sbjct: 191 LSPKENREIPPLDYPRVYQLKKDFPQLTIAINGGIKSLEEAKQHLQY-VDGVMIGREAYQ 249
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHF 299
NP L VD ++ A + V+ Y + L GTY + + + +L
Sbjct: 250 NP-AILAQVDHELFDAVIPVVDTVAVIRALYPYIEQALSQGTY------LGHITRHILGI 302
Query: 300 FHSEPGNGLFKR 311
F PG ++R
Sbjct: 303 FQGIPGARQWRR 314
>gi|325267704|ref|ZP_08134355.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
gi|324980828|gb|EGC16489.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
Length = 383
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 178/302 (58%), Gaps = 8/302 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD HYR +AR I++H WLYTEM+ A I++ G+ DRFLA + ++P+ LQ
Sbjct: 58 LSVAPMLDWTDRHYRYMARQITRHTWLYTEMVNAGAIVF--GDPDRFLARNECENPVALQ 115
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS + LA+A A Y YDEINLNCGCPSP+V G FG LMLD V + ++ +
Sbjct: 116 LGGSEPNLLAQAARKAAEYGYDEINLNCGCPSPRVQ-KGAFGACLMLDAPLVADCLNAMQ 174
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A + V+VK RIG+D Y L DF+ + +P R F++H+R A L+G+SP ENR
Sbjct: 175 DAAPDTAVTVKHRIGIDRQTEYAPLADFVGHLVRHTPCRTFVVHARNAWLDGLSPKENRE 234
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
+PPL+YE Y L ++FPDL +NGGI T +++ L+ VMVGR AY NP + +
Sbjct: 235 VPPLRYELVYRLKQEFPDLEIIINGGIRTNEDIALHLQH-VDGVMVGREAYHNP-FVMHD 292
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D Y R ++V++ Y L N +R + + L H P ++
Sbjct: 293 WDRLFYREKQPAPERDEIVQRLYEYAQQQLSK--NQGTILRHMARHYLGLLHGLPKARVW 350
Query: 310 KR 311
+R
Sbjct: 351 RR 352
>gi|310818800|ref|YP_003951158.1| tRNA-dihydrouridine synthase a [Stigmatella aurantiaca DW4/3-1]
gi|309391872|gb|ADO69331.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 344
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 174/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPMMDWTD H R R +S+H LYTEML +++ G+ DR L F P +HP+ LQ
Sbjct: 9 LCVAPMMDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLH--GDRDRLLGFEPAEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A + A+ YDEINLN GCPS +V G FG LM +P+ V ++ +
Sbjct: 67 LGGSEPAALAEAARIGEAWGYDEINLNVGCPSDRVQS-GRFGACLMAEPELVARLVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RI +DD + + L F+ +S+ +R FI+H+RKA L G+SP ENR I
Sbjct: 126 EAVRIPVTVKSRIAIDDMEEWPTLERFVRLISAEGCSR-FIVHARKAWLQGLSPKENRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +FP L ++NGGI T++ LR VM+GRAAY+NP Y L
Sbjct: 185 PPLRYELVYRLKAEFPSLDISINGGIKTLEAAAEHLRH-VDGVMIGRAAYENP-YLLAEA 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++GA + R VVE Y +A P + + + +L F PG ++
Sbjct: 243 DSRLFGASEAPRDRHDVVEAMLPYMEA---RRSQGAP-LNAITRHMLGLFQGLPGARAWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|262172527|ref|ZP_06040205.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
gi|261893603|gb|EEY39589.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
Length = 316
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQFGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + + ++
Sbjct: 58 PKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPDLVAECVAAMRSVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDAQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y + RDFP LT +NGG+ T++E L+ VM+GR AYQNP Y L VD I+
Sbjct: 177 PRAYQIKRDFPHLTIAVNGGVKTLEEAQQHLQY-LDGVMIGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + R QV+ + Y + L + H+ + + +L F + PG ++R
Sbjct: 235 GLDTPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHILGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+E+ + IP
Sbjct: 291 NAHKPGAGLEVVEQALTKIP 310
>gi|320539402|ref|ZP_08039071.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
gi|320030527|gb|EFW12537.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
Length = 342
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 178/310 (57%), Gaps = 10/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
VA +Y P FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA +
Sbjct: 19 VAPKYSPSRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAHN 75
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+HP+ LQ+G S+ LA +LA YDEINLN GCPS +V +G FG LM
Sbjct: 76 KEEHPVALQLGASDPAALAHCAKLAEQRGYDEINLNVGCPSGRVQ-NGMFGACLMAQAAL 134
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V + + + ++PV+VK RIG+DD DSY LCDFI V+ F +H+RKA L+G
Sbjct: 135 VADGIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFISTVAGRGECAMFTLHARKAWLSG 194
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR +PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQ
Sbjct: 195 LSPKENREVPPLDYPRVYQLKRDFPALTIAINGGVKTLEEAQQHLQH-LDGVMMGREAYQ 253
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP L VD ++G + ++E Y + L +N ++ + + +L F
Sbjct: 254 NPG-ILARVDNELFGVQGAVKDSVAIIESLYPYIEREL----SNGTYLGHITRHILGLFQ 308
Query: 302 SEPGNGLFKR 311
PG ++R
Sbjct: 309 GVPGARQWRR 318
>gi|448244174|ref|YP_007408227.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
gi|445214538|gb|AGE20208.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
Length = 336
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 177/306 (57%), Gaps = 10/306 (3%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
Y FS+APM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 YAANRFSIAPMLDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V +
Sbjct: 67 PVALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI V+ F IH+RKA L+G+SP
Sbjct: 126 IKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPL Y Y L RDFP LT +NGG+ T+ E L+ VM+GR AYQNP
Sbjct: 186 ENREVPPLDYPRVYQLKRDFPALTIAINGGVKTLGEAQQHLQH-LDGVMMGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD+ ++G ++ +VE Y + L +N ++ + + +L F PG
Sbjct: 244 ILARVDSELFGVQTAVPDSVAIVEALYPYIEREL----SNGTYLGHITRHILGLFQGVPG 299
Query: 306 NGLFKR 311
++R
Sbjct: 300 ARQWRR 305
>gi|418708793|ref|ZP_13269593.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418723434|ref|ZP_13282273.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. UI
12621]
gi|421126649|ref|ZP_15586879.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135935|ref|ZP_15596051.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|409963134|gb|EKO26863.1| tRNA dihydrouridine synthase A [Leptospira interrogans str. UI
12621]
gi|410019912|gb|EKO86721.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410435874|gb|EKP85000.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410770723|gb|EKR45936.1| tRNA dihydrouridine synthase A [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 329
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 189/325 (58%), Gaps = 9/325 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H+R RLISKH +LYTEM+ +++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MMDWTDRHFRYFLRLISKHTFLYTEMVHTGAVLH--GDRRKLLSYSPEELPLAIQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++
Sbjct: 59 PKALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P++VKCRIG+ +++ LC FI V R FI+H+R A+L G++P +NR +PPL Y
Sbjct: 118 PITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPTQNRQVPPLHY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +
Sbjct: 177 TYVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 GENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARNFRKILTE 292
Query: 316 AFQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 GMYSGYS-KDLLSKAIQEISNDSLD 316
>gi|325282314|ref|YP_004254855.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
gi|324314123|gb|ADY25238.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
Length = 346
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 187/331 (56%), Gaps = 10/331 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++ A LYTEM+ +++ G+ R L F +HP+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRAFHRCLTSRALLYTEMVTTGAVLH--GDRARHLDFGAAEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA + YDE+NLNCGCPS +V G FG LM P V ++ +
Sbjct: 82 LGGSDPAALAECAALAEHWGYDEVNLNCGCPSDRVQS-GAFGACLMATPDVVAACVAAMQ 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PV+VK RIG+DD + Y L F+ V+ + R FI+H+RKA L G+SP ENR I
Sbjct: 141 EATRLPVTVKHRIGIDDQEDYMDLRRFVETVAG-AGCRTFIVHARKAWLKGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L +FP+LT +LNGG+ T+ + L A VMVGRAAYQ P Y L V
Sbjct: 200 PPLRYELVEQLKAEFPELTISLNGGVQTLAQAQEHL-TWADGVMVGRAAYQTP-YLLARV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G +S TRR+V+ +++ Y + G H + K L F + G +K
Sbjct: 258 DQDIFGEDASPPTRREVLARFRPY--VVQGLAEGQSFH--HLTKSTLGLFAGQHGARHYK 313
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
R L++ + +PD VLD+
Sbjct: 314 RTLSELGHRAGAGIEVLDQAVAGVPDDVLDA 344
>gi|375110873|ref|ZP_09757088.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
gi|374569043|gb|EHR40211.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
Length = 331
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 185/331 (55%), Gaps = 11/331 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
LP FSVAPM+DWTD H R RL+SKHA LYTEM+ II+ +G+ +L F+P++ P
Sbjct: 6 LPQKFSVAPMLDWTDRHCRYFHRLMSKHAVLYTEMVTTGAIIHGKGD---YLGFNPQEQP 62
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+VLQ+GGS LA +LA Y INLN GCPS +V +G FG LM P+ V +++
Sbjct: 63 VVLQLGGSEPAELAHCAKLAEQRGYAAINLNVGCPSDRVQ-NGMFGACLMARPQLVADSV 121
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ ++PVSVK RIG+DD D Y L DF+ V++ + R F+IH+RKA L G+SP E
Sbjct: 122 KAMQDAVSIPVSVKTRIGIDDSDEYQFLQDFVATVAA-AGCRQFVIHARKAWLKGLSPKE 180
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL Y Y L +DFP L ++NGGI T+ E L+ VM+GR AY NP Y
Sbjct: 181 NREIPPLNYPRVYQLKQDFPTLDISINGGIKTLAEAEQQLQY-LDGVMIGREAYTNP-YL 238
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD +Y S + Q+V Y + + G H + + +L F +PG
Sbjct: 239 LSQVDAVLYQDVWSVPGQHQLVRLMVPYIEQQM-QQGARFWH---IARHMLGLFQGQPGA 294
Query: 307 GLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R L + + +P+S
Sbjct: 295 RQWRRLLSEQGHLADAKPELLLQALALVPES 325
>gi|307154453|ref|YP_003889837.1| yjbN family TIM-barrel protein [Cyanothece sp. PCC 7822]
gi|306984681|gb|ADN16562.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 7822]
Length = 329
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 184/331 (55%), Gaps = 10/331 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q L SVAPMM+ TD H+R L R I++ LYTEM+ II+ G+ + L FS E+
Sbjct: 6 QLLANPLSVAPMMERTDRHFRYLMRQITRRTLLYTEMITTAAIIH--GDRHKLLDFSTEE 63
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
P+ LQ+GG N LA +A + YDE+NLN GCPS +V +G FG LM P+ V
Sbjct: 64 KPLALQLGGDNPQELALCASIAADWGYDEVNLNVGCPSDRVQ-NGNFGACLMAQPEKVAH 122
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + N+PV+VK RIG+DD D Y L +F+ VS R F +H+RKA L G+SP
Sbjct: 123 CVAAMQKAVNIPVTVKHRIGIDDRDRYEDLANFVRIVSEAGCCR-FSVHARKAWLKGLSP 181
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENRTIPPL+YE Y L ++FP L +NGGI T+++V+ L + VM+GRAAY NP
Sbjct: 182 KENRTIPPLRYEDVYRLKQEFPHLFIEINGGITTLEQVHQQL-QWVDGVMIGRAAYDNP- 239
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y VD IYG + TR QV EK Y + I+ + + + + LL F +P
Sbjct: 240 YLFATVDRDIYGEETIPPTRHQVAEKMLPYIEDIV----SQGIKLHAISRHLLQLFSGQP 295
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIP 335
G +KR +E + +P
Sbjct: 296 GTKAWKRYISENVHHQAAGAEVIEAALAQVP 326
>gi|345874819|ref|ZP_08826618.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
gi|343969924|gb|EGV38127.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
Length = 336
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 152/233 (65%), Gaps = 4/233 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD HYR +AR IS+H WLY+EM+ A IIY G+ DRFL F+ + P+ LQ
Sbjct: 14 LSIAPMLDWTDRHYRHMARQISRHTWLYSEMINAGAIIY--GDQDRFLMFNEGEQPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LAKA + Y Y+EINLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 72 LGGSEPADLAKAAKAGEQYGYNEINLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNSMQ 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ ++ + FI+H+R A L+G+SP ENR +
Sbjct: 131 DAVRIPVTVKHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREV 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PPLKYEY Y L ++FP+L +NGG+ T +E+ L+ VMVGR AY NP
Sbjct: 191 PPLKYEYVYRLKQEFPNLEIIINGGVTTNEEIAGHLQH-VDGVMVGREAYHNP 242
>gi|417957193|ref|ZP_12600119.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
gi|343968773|gb|EGV36996.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
Length = 336
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 152/233 (65%), Gaps = 4/233 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD HYR +AR IS+H WLY+EM+ A IIY G+ DRFL F+ + P+ LQ
Sbjct: 14 LSIAPMLDWTDRHYRHMARQISRHTWLYSEMINAGAIIY--GDQDRFLMFNEGEQPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LAKA + Y Y+EINLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 72 LGGSEPADLAKAAKAGEQYGYNEINLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNSMQ 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ ++ + FI+H+R A L+G+SP ENR +
Sbjct: 131 DAVRIPVTVKHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREV 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PPLKYEY Y L ++FP+L +NGG+ T +E+ L+ VMVGR AY NP
Sbjct: 191 PPLKYEYVYRLKQEFPNLEIIINGGVTTNEEIAGHLQH-VDGVMVGREAYHNP 242
>gi|421115380|ref|ZP_15575788.1| dihydrouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410013158|gb|EKO71241.1| dihydrouridine synthase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|456984687|gb|EMG20683.1| dihydrouridine synthase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 328
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 189/324 (58%), Gaps = 9/324 (2%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H+R RLISKH +LYTEM+ +++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MDWTDRHFRYFLRLISKHTFLYTEMVHTGAVLH--GDRRKLLSYSPEELPLAIQLGGSDP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++P
Sbjct: 59 KALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
++VKCRIG+ +++ LC FI V R FI+H+R A+L G++PA+NR +PPL Y
Sbjct: 118 ITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPAQNRQVPPLHYT 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +G
Sbjct: 177 YVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAA 316
L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 ENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARSFRKILTEG 292
Query: 317 FQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 MYSGYS-KDLLSKAIQEISNDSLD 315
>gi|429093448|ref|ZP_19156041.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
gi|426741682|emb|CCJ82154.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
Length = 331
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 183/326 (56%), Gaps = 10/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDF+ + FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDEQDSYEFLCDFVGTAAEQGGCDTFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI T++E A L VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLRRDFPQLTMSINGGIKTLEEAKAHLEH-MDGVMVGREAYQNPGL-LASV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + VV Y + L ++ ++ + + +L F PG ++
Sbjct: 248 DRDIFGLNTPDADPVAVVRAMYPYIEREL----SDGAYLGHITRHMLGLFQGIPGARQWR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R S LE+ + + D
Sbjct: 304 RYLSENAHKPGADVSVLEQALKLVAD 329
>gi|114765460|ref|ZP_01444570.1| tRNA-dihydrouridine synthase A [Pelagibaca bermudensis HTCC2601]
gi|114542170|gb|EAU45201.1| tRNA-dihydrouridine synthase A [Roseovarius sp. HTCC2601]
Length = 315
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 177/320 (55%), Gaps = 8/320 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R L RL+S+ A LY+EM+ A ++ +G L ++PE+HP+ LQ+GGS+
Sbjct: 1 MMDWTDRHCRYLHRLLSRRALLYSEMVTAPALV--RGGALHLLDYNPEEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+ LA+A L YD+I+LNCGCPS +V G FG LM P+ V + ++ + +
Sbjct: 59 PEELARAATLGEQAGYDQIDLNCGCPSDRVQS-GTFGAVLMRSPELVADCVAAMREAVKI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VKCRIGVD+ + + L DF+ K+S R +IH+RKA L G+SP ENR IPPL Y
Sbjct: 118 DVTVKCRIGVDEQEPRDVLPDFLQKISGAGCER-VVIHARKAWLQGLSPKENRDIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E + R FP L ++NGGI +D A L G VM+GRAAY PW L + D IY
Sbjct: 177 EIVREMKRAFPQLHVSINGGITDLDTAEALLADGLDGVMIGRAAYHQPWDILANADARIY 236
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G + ++ + V+ Y +G + + + + + +L F PG ++R
Sbjct: 237 GEAAGPVSPEEAVQAMLPY----IGRHLASGGRLHQITRHMLGLFAGRPGARQWRRVLSE 292
Query: 316 AFQTCKTVKSFLEETIVAIP 335
+EE + +P
Sbjct: 293 GATRDGAGPELVEEALSRVP 312
>gi|27378845|ref|NP_770374.1| tRNA-dihydrouridine synthase A [Bradyrhizobium japonicum USDA 110]
gi|27351994|dbj|BAC48999.1| blr3734 [Bradyrhizobium japonicum USDA 110]
Length = 331
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 172/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPMMDWTD H R R +++ A LYTEML II+ G+ +R L F ++P+ LQ
Sbjct: 8 FAVAPMMDWTDRHCRVFHRQLTRRALLYTEMLTTGAIIH--GDRERLLGFDACENPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + A+ YDEINLN GCPS +V G FG LM +P+ V + +
Sbjct: 66 LGGSDPSELAQAARIGEAFGYDEINLNVGCPSDRVK-DGRFGACLMAEPELVARCVDAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
VPV+VKCRIG+DD D L D + + + I+H+RKA LNG+SP ENR I
Sbjct: 125 RAVAVPVTVKCRIGIDDQDPEVAL-DTLARAVVAAGCDALIVHARKAWLNGLSPKENRDI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L R PD+ +NGGI +DE A L VM+GRAAYQ PW L V
Sbjct: 184 PPLDYERVYRLKRAMPDVPVIINGGIPGIDEAKAHLEH-VDGVMLGRAAYQEPWRLLS-V 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ I+G + T + +E Y +A L R H + + + FH+ PG F+
Sbjct: 242 DSDIFGETAPHATMQDALEAMMPYIEAQLAR--GTRLHA--ITRHFVGAFHAVPGARAFR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|422024011|ref|ZP_16370512.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
gi|414091411|gb|EKT53096.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
Length = 342
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/245 (48%), Positives = 157/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K+ LYTEM+ IIY +G+ +LAFS E+ P+ LQ
Sbjct: 25 FSVAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGD---YLAFSEEEQPVALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +L YDEINLN GCPS +V +G FG LM D + V + + +
Sbjct: 82 LGGSDPAALAQCAKLGEERGYDEINLNVGCPSDRVQ-NGRFGACLMADAQLVADCIKAMK 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC+FI V++ FIIH+RKA L+G+SP ENR I
Sbjct: 141 DVVSIPVTVKTRIGIDEQDSYEFLCEFIDTVATKGNCEMFIIHARKAWLSGLSPKENREI 200
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E LR VMVGR AYQNP L V
Sbjct: 201 PPLDYPRVYQLKRDFPHLTMAINGGVKTLEEAKEHLRH-LDGVMVGREAYQNP-SILTAV 258
Query: 251 DTAIY 255
D ++
Sbjct: 259 DNQLF 263
>gi|337279450|ref|YP_004618922.1| tRNA-dihydrouridine synthase [Ramlibacter tataouinensis TTB310]
gi|334730527|gb|AEG92903.1| candidate tRNA-dihydrouridine synthase [Ramlibacter tataouinensis
TTB310]
Length = 331
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 167/277 (60%), Gaps = 7/277 (2%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R RL+S+ A LYTEM+ +++ G++ R L F +HP+
Sbjct: 10 PWRLSVAPMMDWTDRHCRYFHRLLSRRALLYTEMVTTGALLH--GDVPRHLDFDAAEHPV 67
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA+ L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 68 ALQLGGSEPADLAQCARLGRQWGYDEINLNCGCPSERVQ-RGAFGACLMAEPRLVADCVK 126
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D +SY+ + DF+ V+ + R FI+H+R A L G+SP EN
Sbjct: 127 AMVDAVDLPVTVKHRIGIDKTESYDFVRDFVGTVAE-AGCRVFIVHARNAWLQGLSPKEN 185
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+YE + L RDFP L +NGG+ D+V L+ VMVGR AY PW+ L
Sbjct: 186 REVPPLRYELVHRLKRDFPGLVIAINGGVTADDQVAGQLQV-LDGVMVGRQAYHQPWW-L 243
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
D A GAP+ L+R V E+ Y + +G
Sbjct: 244 ASWDAAFLGAPARELSRETVEEQMVGYMERQAQAHGT 280
>gi|170698688|ref|ZP_02889754.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
gi|170136392|gb|EDT04654.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
Length = 328
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 164/264 (62%), Gaps = 6/264 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ KV+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGKVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYQLKRDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL 279
G+ ++ TR + K Y A L
Sbjct: 235 GSTAAVPTREEAEAKLIEYCAAEL 258
>gi|146306962|ref|YP_001187427.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina ymp]
gi|145575163|gb|ABP84695.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas mendocina ymp]
Length = 331
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R +S+HA LYTEM+ +I+ G+ +RFL +S +HPI LQ
Sbjct: 15 FSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIH--GDRERFLRYSECEHPIALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA ++A + YDE+NLN GCPS +V + G LM P V + + +
Sbjct: 73 LGGSNPQDLAACAKMAEQHGYDEVNLNVGCPSDRVQNN-MIGACLMGHPALVADCVKAMR 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG++ DSY++LCDF+ +V + R F +H+R A+L G+SP ENR I
Sbjct: 132 DAVSIPVTVKHRIGINGRDSYSELCDFVGQVRD-AGCRSFTVHARIAILEGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L RDFPDL LNGGI T++E L+ VM+GR AY NP Y L V
Sbjct: 191 PPLRYDVAAQLKRDFPDLEIILNGGIKTLEECEQHLQT-FDGVMLGREAYHNP-YLLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++GA + ++R + + Y + L G + V + +L PG F+
Sbjct: 249 DNRLFGAAAPSISRMDALLALKPYVEQHLREGGT----LHHVSRHVLGLAQGFPGARRFR 304
Query: 311 R 311
+
Sbjct: 305 Q 305
>gi|424044986|ref|ZP_17782557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
gi|408887165|gb|EKM25800.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
Length = 315
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 186/323 (57%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + ++
Sbjct: 58 AADLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F + PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|242238196|ref|YP_002986377.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech703]
gi|242130253|gb|ACS84555.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech703]
Length = 335
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S +A LYTEM+ I++ +G+ +LA++ E+HP+ LQ
Sbjct: 19 FSVAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGRGD---YLAYNDEEHPLALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ E+A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 76 LGGSDPQALAQCAEIAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEAELVADCVDAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LC FI V+ FI+H+RKA L+G+SP ENR I
Sbjct: 135 GRVRLPVTVKTRIGIDDQDSYDFLCAFIRTVAERGGCDTFIVHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T+++ L+ VMVGR AYQNP L V
Sbjct: 195 PPLDYPRVYQLKRDFPALTIAINGGIKTLEQAQQHLQH-LDGVMVGREAYQNPG-VLAQV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++G + VVE Y + L + G H + + +L F PG ++
Sbjct: 253 DSQLFGVTAPVPDLFAVVEGMYPYIEREL-SRGAQLGH---ITRHMLGLFQGLPGARQWR 308
Query: 311 R 311
R
Sbjct: 309 R 309
>gi|251788352|ref|YP_003003073.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
gi|247536973|gb|ACT05594.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
Length = 344
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 181/307 (58%), Gaps = 22/307 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+HA LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSIAPMLDWTDRHCRYFHRLLSQHALLYTEMVTTGAILHGKGD---YLAYSDEEHPLALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA YDEINLN GCPS +V +G FG LM + + V + ++ +
Sbjct: 85 LGGSDPAALAQCALLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEAQLVADCVAAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI VS FI+H+RKA L+G+SP ENR I
Sbjct: 144 ERVGIPVTVKTRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T+ + L+ VMVGR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKRDFPSLTVAINGGIKTLADAQQHLQH-VDGVMVGREAYQNPG-MLAQV 261
Query: 251 DTAIYGAPSSGLTRRQVVE------KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D+ ++G + + VV+ + ++ G A LG + + +L F P
Sbjct: 262 DSELFGVDRAVPDQVAVVQAMYPYIERELSGGASLG----------HITRHMLGLFQGIP 311
Query: 305 GNGLFKR 311
G ++R
Sbjct: 312 GARQWRR 318
>gi|218246535|ref|YP_002371906.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8801]
gi|218167013|gb|ACK65750.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8801]
Length = 331
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 182/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM+ TD H+R R I++ LYTEM+ + I Y G+ + L FSPE+ P+ LQ
Sbjct: 9 LSIAPMMERTDRHFRYFMRQITQDTLLYTEMIVTQAIRY--GDRTKLLGFSPEEKPLSLQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ +A + YDE+NLN GCPS +V G FG LML P+ V + +
Sbjct: 67 LGGDDPQELAECAMIAEDFGYDEVNLNVGCPSDRVQS-GNFGACLMLQPELVARCVEAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+P+++K RIGVD+ D Y L +F+ K+ S + + F +H+RKA L G+SP ENRTI
Sbjct: 126 KKVNIPITIKHRIGVDERDRYEDLANFV-KIVSDAGCQRFTVHARKAWLKGLSPKENRTI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKYE Y L ++F L +NGGI T+D++ L + VM+GRAAY NP Y V
Sbjct: 185 PPLKYEEVYQLKQEFSQLFIEINGGIITLDQIEHHL-QFVDGVMIGRAAYDNP-YLFATV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG TR QVVEK Y D + NN + + + +L F PG +K
Sbjct: 243 DRDIYGQNIIPPTRHQVVEKMLPYID----YWVNNGLKLHAISRHILAIFGGVPGTKAWK 298
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +EE + +P
Sbjct: 299 RHISENAHLPGAGVKVIEEALGKVP 323
>gi|421865213|ref|ZP_16296893.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
gi|358074676|emb|CCE47771.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
Length = 328
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 175/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P + PI LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSESPIALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ ++ TR + + Y A L ++ +++ L + PG ++R
Sbjct: 235 GSTAAVPTREEAEAQLIAYCAAEL----KRDTYLGAIVRHALGLYRGMPGARGWRR 286
>gi|239815113|ref|YP_002944023.1| tRNA-dihydrouridine synthase A [Variovorax paradoxus S110]
gi|239801690|gb|ACS18757.1| TIM-barrel protein, yjbN family [Variovorax paradoxus S110]
Length = 333
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/256 (47%), Positives = 161/256 (62%), Gaps = 6/256 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R RL+S+HA LYTEM+ +++ G++ R L F+ E+HP+ LQ+
Sbjct: 16 SVAPMMDWTDRHCRYFHRLMSRHALLYTEMVTTGALVH--GDVPRHLRFNEEEHPVALQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS +LA L + YDEINLNCGCPS +V G FG LM +P V + + +
Sbjct: 74 GGSEPADLAHCARLGEEWGYDEINLNCGCPSERVQ-RGAFGACLMAEPALVADCVKAMVD 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
T +PV+VK RIG+D +SY + DF+ VS + R FI+H+R A L G+SP +NR IP
Sbjct: 133 ATRLPVTVKHRIGIDKIESYEFVRDFVGAVSE-AGCRGFIVHARNAWLQGLSPKQNREIP 191
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+YE + L +FP+L F++NGGI+ +V+ LR VMVGR AY NPW+ L D
Sbjct: 192 PLRYELVHRLKHEFPELDFSINGGISASAQVHEHLRL-LDGVMVGREAYHNPWW-LAEWD 249
Query: 252 TAIYGAPSSGLTRRQV 267
YGA LTR V
Sbjct: 250 AEFYGAVPQPLTREDV 265
>gi|227326002|ref|ZP_03830026.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 340
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LCDFI V+ FI+H+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECDTFIVHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTLAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ VV Y + L + G + H + + +L F PG ++
Sbjct: 258 DRELFGIDAATPDLAGVVRAMYPYIERELSS-GASLGH---ITRHMLGMFQGIPGARQWR 313
Query: 311 R 311
R
Sbjct: 314 R 314
>gi|172037930|ref|YP_001804431.1| tRNA-dihydrouridine synthase A [Cyanothece sp. ATCC 51142]
gi|171699384|gb|ACB52365.1| putative dihydrouridine synthase TIM-barrel protein nifR3
[Cyanothece sp. ATCC 51142]
Length = 342
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 178/302 (58%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD H+R R I++H LYTEM+ + II G+ + L FSPE+ P+ LQ
Sbjct: 17 LSVAPMMDYTDRHFRYFMRQITRHTLLYTEMIVSAAII--NGDRPKLLDFSPEEKPLSLQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
IGG N LA+ + + YDE+NLN GCPS +V G FG LM +P+ V + + +
Sbjct: 75 IGGDNPQELAECAIIGEDWGYDEVNLNVGCPSDRVQS-GHFGACLMANPELVAQCVEKMQ 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY + F+ K+ S + + F +H+RKA L G+SP ENR I
Sbjct: 134 QGVTIPVTVKHRIGIDHQDSYEDMARFV-KIVSEAGCQRFTVHARKAWLQGLSPKENRNI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L ++FP L +NGGI +++V L K VM+GR+AY NP Y L V
Sbjct: 193 PPLRYQEVYRLKQEFPQLFIEINGGITNLEQVRNHL-KLVDAVMIGRSAYDNP-YLLATV 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLF 309
D IY + LTR Q++EK Y D + +R H + + + LL F PG +
Sbjct: 251 DRDIYRDKVTQLTRHQIIEKMLPYIDDWV-----SRGHKLHKISRHLLAIFSGIPGTKAW 305
Query: 310 KR 311
KR
Sbjct: 306 KR 307
>gi|443316059|ref|ZP_21045520.1| tRNA dihydrouridine synthase A [Leptolyngbya sp. PCC 6406]
gi|442784341|gb|ELR94220.1| tRNA dihydrouridine synthase A [Leptolyngbya sp. PCC 6406]
Length = 345
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 180/302 (59%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R + R I++H LYTEM+ ++ I+ +G+ D L+F+P++ P+VLQ
Sbjct: 29 LSVAPMMDRTDRHFRYMMRQITRHTLLYTEMVTSQAIL--RGDRDHLLSFTPDEKPLVLQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA +A Y YDEINLN GCPS +V G FG LM P+ V + ++ +
Sbjct: 87 VGGDDPQDLAACARIAADYGYDEINLNVGCPSDRVQS-GHFGACLMAQPQRVADCVATMM 145
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + +PVSVK RIG+DD D Y L F+ V++ R F +H+RKA L G+SP ENRT+
Sbjct: 146 AASPLPVSVKHRIGIDDLDHYEHLFSFVATVAATGCQR-FTVHARKAWLQGLSPKENRTV 204
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +DFP L +NGG +D+V L + VM+GRAAY P Y V
Sbjct: 205 PPLRYGEVHRLKQDFPQLWIEINGGFTDLDQVEQQL-QAVDAVMIGRAAYDTP-YLFAEV 262
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRP-HVRDVMKPLLHFFHSEPGNGLF 309
D +GA S +R QVV Y D Y R + + + LL FH +PG+ +
Sbjct: 263 DQRFFGADMSPPSRAQVVATMLPYID-----YWTGRGLKLYKITRHLLMLFHGQPGSRRW 317
Query: 310 KR 311
++
Sbjct: 318 RQ 319
>gi|354556623|ref|ZP_08975915.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
gi|353551397|gb|EHC20801.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
Length = 337
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 178/302 (58%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD H+R R I++H LYTEM+ + II G+ + L FSPE+ P+ LQ
Sbjct: 12 LSVAPMMDYTDRHFRYFMRQITRHTLLYTEMIVSAAII--NGDRPKLLDFSPEEKPLSLQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
IGG N LA+ + + YDE+NLN GCPS +V G FG LM +P+ V + + +
Sbjct: 70 IGGDNPQELAECAIIGEDWGYDEVNLNVGCPSDRVQS-GHFGACLMANPELVAQCVEKMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY + F+ K+ S + + F +H+RKA L G+SP ENR I
Sbjct: 129 QGVTIPVTVKHRIGIDHQDSYEDMARFV-KIVSEAGCQRFTVHARKAWLQGLSPKENRNI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L ++FP L +NGGI +++V L K VM+GR+AY NP Y L V
Sbjct: 188 PPLRYQEVYRLKQEFPQLFIEINGGITNLEQVRNHL-KLVDAVMIGRSAYDNP-YLLATV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLF 309
D IY + LTR Q++EK Y D + +R H + + + LL F PG +
Sbjct: 246 DRDIYRDKVTQLTRHQIIEKMLPYIDDWV-----SRGHKLHKISRHLLAIFSGIPGTKAW 300
Query: 310 KR 311
KR
Sbjct: 301 KR 302
>gi|385331981|ref|YP_005885932.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Marinobacter
adhaerens HP15]
gi|311695131|gb|ADP98004.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Marinobacter
adhaerens HP15]
Length = 344
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 183/326 (56%), Gaps = 17/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPMMDWT +HYR LAR +S+H LYTEM+ +I+ G+ RFL ++P+ LQ
Sbjct: 20 FCVAPMMDWTTSHYRYLARQLSRHTLLYTEMVTTGALIH--GDTARFLRHDEAEYPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA LA Y +DE+NLN GCPS +V + G LM P V E + +
Sbjct: 78 LGGSDAGELAHCARLAQQYGFDEVNLNVGCPSDRVQNN-MIGACLMGHPDKVAEGVRAMI 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++PV+VK RIG+D +S++ LC+F+ KVS + R FI+H+R A+L G+SP ENR +
Sbjct: 137 EATDLPVTVKHRIGIDGRESWDDLCEFVEKVSE-AGCRTFIVHARIAILEGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY++ Y L +P L +NGGI T E + LR VM+GR AY NPW G V
Sbjct: 196 PPLKYDWVYRLKAKYPHLEIIINGGIKTFGECHEHLRH-TDGVMLGREAYHNPWLLAG-V 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G + TR Q + + +G+ + + + LL FH +PG F+
Sbjct: 254 DPEFFGQAAPVETRHQALRAMLPF----IGSELERGVFLTHMSRHLLGLFHGQPGGRQFR 309
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R K+ A + +T + E
Sbjct: 310 RYISENAHKSGAGLEVIETALEKVRE 335
>gi|241662836|ref|YP_002981196.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12D]
gi|240864863|gb|ACS62524.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12D]
Length = 346
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 171/279 (61%), Gaps = 17/279 (6%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 12 PRRLSVAPMMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDEFEHPV 69
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA+A L + Y EINLNCGCPS +V G FG LM +PK V + +
Sbjct: 70 ALQLGGSEPDDLAQAARLGQQWGYKEINLNCGCPSERVQ-RGAFGACLMAEPKLVAQGVK 128
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 129 AMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKEN 187
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL+YE Y L RDFP L LNGG+ T+++++A L AH VM+GR AY +P +
Sbjct: 188 REIPPLRYEVVYQLKRDFPHLEILLNGGVQTLEQIDAHL---AHVDGVMIGREAYHHP-H 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
+ D YGA + TR +V DA++G G
Sbjct: 244 LMAAFDARYYGAGTEAPTRAEVE-------DAMIGYVGR 275
>gi|227112414|ref|ZP_03826070.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 340
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 22/307 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPQALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LCDFI V+ FI+H+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYGAPSSGLTRRQVVE------KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D ++G ++ VV + ++ G A LG + + +L F P
Sbjct: 258 DRELFGIDAATPDLAGVVRAMYPYIERELSGGASLG----------HITRHMLGMFQGIP 307
Query: 305 GNGLFKR 311
G ++R
Sbjct: 308 GARQWRR 314
>gi|309782238|ref|ZP_07676967.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|308919009|gb|EFP64677.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
Length = 346
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 171/279 (61%), Gaps = 17/279 (6%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 12 PRRLSVAPMMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDEFEHPV 69
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA+A L + Y EINLNCGCPS +V G FG LM +PK V + +
Sbjct: 70 ALQLGGSEPDDLAQAARLGQQWGYKEINLNCGCPSERVQ-RGAFGACLMAEPKLVAQGVK 128
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 129 AMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKEN 187
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL+YE Y L RDFP L LNGG+ T+++++A L AH VM+GR AY +P +
Sbjct: 188 REIPPLRYEVVYQLKRDFPHLEILLNGGVQTLEQIDAHL---AHVDGVMIGREAYHHP-H 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
+ D YGA + TR +V DA++G G
Sbjct: 244 LMAAFDARYYGAGTEAPTRAEVE-------DAMIGYVGR 275
>gi|398804027|ref|ZP_10563030.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
gi|398095035|gb|EJL85385.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
Length = 352
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 168/267 (62%), Gaps = 7/267 (2%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R RL+S+HA LYTEM+ +I+ G+++R L F+ E+HP+
Sbjct: 19 PWRLSVAPMMDWTDRHCRHFHRLLSRHALLYTEMVTTGALIH--GDVERHLRFNAEEHPV 76
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA+ L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 77 ALQLGGSEPADLAQCARLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMAEPQLVADCVK 135
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ VPV+VK RIG+D +SY + DF+ VS + + FI+H+R A L G+SP EN
Sbjct: 136 AMVDVVAVPVTVKHRIGIDKGESYEFVRDFVGTVSE-AGCKVFIVHARNAWLKGLSPKEN 194
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+YE + L R+FP L +NGGINT +EV L VM+GR AY NPW+ L
Sbjct: 195 REVPPLRYELVHRLKREFPHLGICINGGINTQEEVAGHL-AALDGVMIGREAYHNPWW-L 252
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY 274
D+A +GA S L+R V + Y
Sbjct: 253 ASWDSAFFGAAESPLSREAVESQMCDY 279
>gi|429207920|ref|ZP_19199176.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
gi|428189313|gb|EKX57869.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
Length = 316
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 174/299 (58%), Gaps = 11/299 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H R RL+++ A LYTEM+ A +I+ G DR L FS +HP+ LQ+G
Sbjct: 1 MAPMLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GPRDRLLGFSEAEHPVALQLG 58
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS+ LA+A LA Y YDEINLN GCPS +V GCFG LM P V + ++ + A
Sbjct: 59 GSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQS-GCFGAVLMERPALVADCVTAMIAE 117
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
+ VPV+VKCRIGVD+ + L F+ V++ + RHF+IH+RKA L G+SP ENR IPP
Sbjct: 118 SPVPVTVKCRIGVDEQEPSEVLPAFLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y A+ R FP+LT LNGG+ ++ + A L +G +M+GRAAY P L D
Sbjct: 177 LDYPLVIAMKRRFPELTICLNGGVGSLTQAEALLAQGLDGIMIGRAAYNEPEVLL-EADR 235
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
P L V+ + Y A L G R H + + +L F PG ++R
Sbjct: 236 LWGEEPPRDLA--AVLADMRPYISAHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 288
>gi|381400469|ref|ZP_09925434.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
gi|380834514|gb|EIC14354.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
Length = 357
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 180/302 (59%), Gaps = 8/302 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD HYR +AR I++H WLYTEM+ A I+Y G+ DRFL + + P+ LQ
Sbjct: 29 LSVAPMLDWTDRHYRHMARQITRHTWLYTEMINAGAIVY--GDPDRFLQRNECEDPVALQ 86
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A + A Y YDEINLNCGCPSP+V G FG LMLD V + ++ +
Sbjct: 87 LGGSEPTLLAQAAQKAAQYGYDEINLNCGCPSPRVQ-KGAFGACLMLDVNLVADCLNAMQ 145
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A +P+++K RIG+D Y L DF+ + + + R FI+H+R A L+G+SP ENR
Sbjct: 146 DAVPAIPITIKHRIGIDKQTEYQPLADFVGSLHNKTACRTFIVHARNAWLDGLSPKENRE 205
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
IPPL+Y++ Y L ++FPDL +NGG+ T ++ L+ VM+GR AY NP Y +
Sbjct: 206 IPPLRYDFVYHLKQEFPDLEIIINGGVQTNTQIAEHLQH-VDGVMMGREAYHNP-YIMHD 263
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
DT YG TR Q+ + Q+Y A +R +++ L H G ++
Sbjct: 264 WDTLFYGEKQPAPTREQIAQ--QLYNYATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIW 321
Query: 310 KR 311
+R
Sbjct: 322 RR 323
>gi|443327372|ref|ZP_21055998.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
gi|442792994|gb|ELS02455.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
Length = 311
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 183/319 (57%), Gaps = 14/319 (4%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MD TD HYR L R I+K+ LYTEM+ II+ G+ ++ L FSPE+ P+VLQ+GG
Sbjct: 1 MDRTDRHYRYLMRQITKYTLLYTEMVTTPAIIH--GDREKLLGFSPEEKPLVLQLGGDQP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA+ ++A + YD +NLN GCPS +V G FG LM P+ V A+S + +P
Sbjct: 59 SELAECAKVAQDWGYDAVNLNVGCPSSRVQS-GNFGACLMAKPQLVAAAISAMQKAVTIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIG+DD D Y + +F+ ++ S + RHF +H+RKA L G+SP ENR +PPL+YE
Sbjct: 118 VTVKHRIGIDDRDRYEDMAEFV-RIVSEAGCRHFTVHARKAWLKGLSPKENRNVPPLRYE 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y L R+FP L +NGGI + +V L K VM+GRAAY NP Y VD Y
Sbjct: 177 DVYRLKREFPHLFIEINGGIVELKQVTECL-KSVDAVMIGRAAYDNP-YLFATVDQEFYD 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-ADA 315
+ ++ R+ +VE Y D + G + + + +L F +PG +KR +
Sbjct: 235 SQAAIPRRQDIVEAMLPYIDHWMSRGG----RLNSITRHMLQLFARQPGTKAWKRYISQN 290
Query: 316 AF---QTCKTVKSFLEETI 331
AF + T+K+ L E I
Sbjct: 291 AFLPNSSSTTIKNALAEVI 309
>gi|427402986|ref|ZP_18893983.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
gi|425718169|gb|EKU81120.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
Length = 344
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 179/303 (59%), Gaps = 8/303 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R I++H WLYTEM+ ++Y G+++R L + +HP+ LQ
Sbjct: 21 LSVAPMMDWTDRHCRVFHRQITRHTWLYTEMVTTGALVY--GDVERHLRYDDVEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAK+ +L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 79 LGGSDPADLAKSAKLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMNEPQLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++ V+VK RIG+D + Y + DF+ ++ + + FI+H+R A+L G+SP ENR I
Sbjct: 138 DAVSIDVTVKHRIGIDYDEEYGFVRDFVGTIAD-AGCKTFIVHARNAVLKGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y Y L R+FPDL +NGGI + DE+ L+ VM+GR AY NPW T+
Sbjct: 197 PPLRYAVAYQLKREFPDLEILINGGIKSDDEIALHLQH-VDGVMLGREAYHNPW-TMADW 254
Query: 251 DTAIYGAPSSG--LTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D YG +G +R +V+E Y + L YG + + + +L PG
Sbjct: 255 DRRFYGDAGAGRPRSRVEVLEAMIPYIEEQLRLYGPLGLKLNSITRHMLGLMQGLPGARS 314
Query: 309 FKR 311
F++
Sbjct: 315 FRQ 317
>gi|423112047|ref|ZP_17099741.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|423117437|ref|ZP_17105128.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
gi|376375372|gb|EHS88164.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|376375567|gb|EHS88353.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
Length = 313
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 178/322 (55%), Gaps = 10/322 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L RDFP LT +NGGI +++E L VMVGR AYQNP L VD I+
Sbjct: 177 PRVYQLKRDFPHLTMAINGGIKSLEEAKEHLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G VV Y + L +N ++ V + +L F PG ++R
Sbjct: 235 GVEGVDADPVSVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDS 337
+ LE+ + + D
Sbjct: 291 NAHKAGADINVLEQALKLVADK 312
>gi|240950331|ref|ZP_04754601.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
gi|240295142|gb|EER45961.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
Length = 329
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 191/335 (57%), Gaps = 23/335 (6%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYSGRFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDL---LEYDPAE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y E+NLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPTQLAHCAKLVQERGYAEVNLNVGCPSDRVQ-NGMFGACLMGKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+D+ DSY LCDFI K+ S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVEIPVTVKHRIGIDELDSYAFLCDFIEKIQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL YE Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP
Sbjct: 178 KENREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKHHL-QFVDGVMVGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHS 302
LG +D+ I+ +T R+ VEK Y + L G Y N+ +++ +L F +
Sbjct: 236 SLLGEIDSQIFNENKPLVTAREAVEKMLPYIEKELAKGVYLNH------IVRHMLGAFQN 289
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
G ++R KA A + + SF++E+
Sbjct: 290 CKGARQWRRHLSENACKAGAGVEVVEQALSFVQES 324
>gi|317493445|ref|ZP_07951866.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918388|gb|EFV39726.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R +S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 19 FSVAPMLDWTDRHCRYFHRKLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA LA YDE+NLN GCPS +V +G FG LM + + V + + +
Sbjct: 76 LGGSDPEALAHCARLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMR 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS F +H+RKA L+G+SP ENR I
Sbjct: 135 DVVSIPVTVKTRIGIDDQDSYEFLCDFIDIVSGKGECNSFTVHARKAWLSGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L +NGG+ T++E L+ VM+GR AYQ+P L HV
Sbjct: 195 PPLDYERVYQLKRDFPHLNIAINGGVKTLEEAKIHLQH-LDGVMMGREAYQSP-SILAHV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ + + VV Y + L +N ++ + + +L F S PG ++
Sbjct: 253 DRELFDSTADVPNSIDVVRSLYPYIEREL----SNGTYLGHITRHILGLFQSIPGARQWR 308
Query: 311 R 311
R
Sbjct: 309 R 309
>gi|424031915|ref|ZP_17771339.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
gi|408876920|gb|EKM16025.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
Length = 315
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 186/323 (57%), Gaps = 10/323 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + +V
Sbjct: 58 PTDLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKDVVDV 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L VD ++
Sbjct: 177 PRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G+ + R ++VE+ Y +A L ++ + + +L F + PG ++R
Sbjct: 235 GSNAPVKKRSEIVEEMFPYIEAQLA----KGAYLGHISRHMLGLFQNMPGARQWRRHISE 290
Query: 316 AFQTCKTVKSFLEETIVAIPDSV 338
+ L++ + IP +
Sbjct: 291 NAHKPGSGLEVLQDALAKIPKEL 313
>gi|428223727|ref|YP_007107824.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
gi|427983628|gb|AFY64772.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
Length = 344
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 180/302 (59%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II+ G+ D L FSPE+ P+ LQ
Sbjct: 19 LSIAPMMDRTDRHFRYFLRQITRCTLLYTEMVTSAAIIH--GDRDHLLGFSPEEKPLSLQ 76
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ +A + YDEINLN GCPS +V G FG LM P+ V EA++ +
Sbjct: 77 VGGDDPAQLAQCARIAEDFGYDEINLNVGCPSDRVQS-GNFGACLMAQPERVAEAVAAMQ 135
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T +PV+VK RIG+DD D Y + F+ V+S + RHF +H+RKA L G+SP ENR +
Sbjct: 136 AVTRLPVTVKHRIGIDDRDRYEDMTAFVETVAS-AGCRHFTVHARKAWLQGLSPKENRDV 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L +DFP L +NGGI T+++ L++ VM+GRAAY +P + V
Sbjct: 195 PPLRYDDVYRLKQDFPHLFIEINGGITTLEQARDHLQR-VDAVMIGRAAYDHP-FLFATV 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILG-TYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D YG TR+ V E Y +G + NR + + +L F+ +PG+ +
Sbjct: 253 DRDFYGQAVEPPTRQAVAEAMVPYIARWVGPQFKLNR-----ISRHMLQLFNGQPGSRAW 307
Query: 310 KR 311
KR
Sbjct: 308 KR 309
>gi|398800266|ref|ZP_10559539.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
gi|398095794|gb|EJL86127.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
Length = 332
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/333 (40%), Positives = 187/333 (56%), Gaps = 14/333 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S + LYTEM+ II+ +G+ +LA+S ++HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRKLSGNTLLYTEMVTTGAIIHGKGD---YLAYSEDEHPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM D V + + +
Sbjct: 67 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMADAALVADCIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSIPVTVKTRIGIDEQDSYEFLCDFIGTVAQQGGCETFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPALTMAINGGIKTLEEAKLHLQH-MDGVMMGREAYQNPG-ILAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + + VV Y +A L + ++ V + +L F PG ++
Sbjct: 244 DRELFGRDTPTVDPVAVVRSMYPYIEAEL----SKGMYLGHVTRHMLGLFQGIPGARQWR 299
Query: 311 R----KADAAFQTCKTVKSFLEETIVAIPDSVL 339
R A + V++ L + IP L
Sbjct: 300 RYLSENAHKPGADVRVVEAALALVVDKIPQEAL 332
>gi|288550133|ref|ZP_05969393.2| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288316334|gb|EFC55272.1| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 313
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/298 (43%), Positives = 176/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSDEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + + V +++ + ++
Sbjct: 58 PAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADSIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFIDTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTA 253
Y L RDFP LT ++NGGI +++E L AH VMVGR AYQNP L VD
Sbjct: 177 PRVYQLKRDFPHLTMSINGGIKSLEEAKTHL---AHMDGVMVGREAYQNPG-ILATVDRE 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
I+G + VV Y + L +N + + + +L F PG ++R
Sbjct: 233 IFGVEGADTDPVSVVRAMYPYIEREL----SNGTWLGHITRHMLGLFQGIPGARQWRR 286
>gi|421501772|ref|ZP_15948729.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
gi|400347515|gb|EJO95868.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
Length = 331
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 165/261 (63%), Gaps = 6/261 (2%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L FSVAPMMDWTD H R R +S+HA LYTEM+ +I+ G+ +RFL +S
Sbjct: 8 RPALSRRFSVAPMMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIH--GDRERFLRYSEC 65
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HPI LQ+GGSN +LA ++A + YDE+NLN GCPS +V + G LM P V
Sbjct: 66 EHPIALQLGGSNPQDLAACAKMAEQHGYDEVNLNVGCPSDRVQNN-MIGACLMGHPALVA 124
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + ++PV+VK RIG++ DSY++LCDF+ +V + R F +H+R A+L G+S
Sbjct: 125 DCVKAMRDAVSIPVTVKHRIGINGRDSYSELCDFVGQVRD-AGCRSFTVHARIAILEGLS 183
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+Y+ L +DFPDL LNGGI T++E L+ VM+GR AY NP
Sbjct: 184 PKENREIPPLRYDVAAQLKQDFPDLEIILNGGIKTLEECEQHLQT-FDGVMLGREAYHNP 242
Query: 244 WYTLGHVDTAIYGAPSSGLTR 264
Y L VD ++GA + ++R
Sbjct: 243 -YLLAQVDNRLFGAAAPSISR 262
>gi|389798660|ref|ZP_10201673.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
gi|388444576|gb|EIM00678.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
Length = 328
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/306 (43%), Positives = 182/306 (59%), Gaps = 15/306 (4%)
Query: 8 PPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
PPW SVAPMMDWTD H R RL+S A LYTEM+ + ++ +G R L S ++HP
Sbjct: 9 PPWQLSVAPMMDWTDRHCRYFHRLLSPRARLYTEMVTSAALV--RGKQLRLLEHSQQEHP 66
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS LA+A L YDEINLN GCPS +V G FG LM +P V + +
Sbjct: 67 LALQLGGSEPYELAQAARLGAEAGYDEINLNVGCPSDRVQS-GRFGACLMYEPALVADCV 125
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +VPV+VKCRIGVDD D Y L F ++ + ++H+RKA L G+SP E
Sbjct: 126 KAMRDAVSVPVTVKCRIGVDDQDDYAGLQQFT-ELMLEAGVEVLVVHARKAWLKGLSPKE 184
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR +PPL YE Y L R+FP+L +NGGI+TVD+V + L + VM+GRAAY +P Y
Sbjct: 185 NREVPPLDYERVYRLKREFPELVVVINGGISTVDQVRSHLAQ-LDGVMLGRAAYHDP-YL 242
Query: 247 LGHVDTAIYGAPSSGLTRRQ-VVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L ++ A++ P L RR+ V+++ + Y +A L G H+ + LL + EPG
Sbjct: 243 LAQLEHALHDEP---LPRREDVLQRLRPYVEAELAR-GTALKHIS---RHLLGLYQGEPG 295
Query: 306 NGLFKR 311
F+R
Sbjct: 296 ARAFRR 301
>gi|94499718|ref|ZP_01306255.1| Dihydrouridine synthase TIM-barrel protein yjbN [Bermanella
marisrubri]
gi|94428472|gb|EAT13445.1| Dihydrouridine synthase TIM-barrel protein yjbN [Oceanobacter sp.
RED65]
Length = 330
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 190/337 (56%), Gaps = 30/337 (8%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F APMMDW+D+H R R +SK A+LYTEM+ +I+ G DRF+ + E+HP+ LQ
Sbjct: 13 FCTAPMMDWSDSHCRLFWRTLSKDAFLYTEMVTTGALIHGDGGPDRFIRYRDEEHPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ ++A + YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 73 LGGSNPKDLAQCAKIAQDFGYDEVNLNVGCPSDRVQ-NNMIGACLMGHPQLVADCIKAMQ 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY L F+ V++ + FIIH RKA+L+G+SP ENR I
Sbjct: 132 DAVEIPVTVKHRIGIDDQDSYEHLHHFVDTVAA-TGCETFIIHGRKAILDGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE + +D P L LNGGI T E L K A VM+GR AY NP L V
Sbjct: 191 PPLRYEVVQQIKQDLPQLEVILNGGIKTHKEATEHL-KWADGVMLGREAYHNP-SVLMDV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRD----------VMKPLLHFF 300
D YG ++ D I Y PH+ D V + +L F
Sbjct: 249 DALYYGHEPQTKDKK----------DCIRALY----PHIEDHLSKGFKLSYVTRHILGLF 294
Query: 301 HSEPGNGLFKRK-ADAAFQTCKTVKSFLEETIVAIPD 336
+ +PG+ LF+R ++ AF+ ++++ +E+ + +PD
Sbjct: 295 NGQPGSRLFRRHLSEQAFKKDASIQT-IEDALAYMPD 330
>gi|269468879|gb|EEZ80471.1| tRNA-dihydrouridine synthase [uncultured SUP05 cluster bacterium]
Length = 310
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 183/315 (58%), Gaps = 10/315 (3%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R RL+SKH LYTEM+ + I++ G+ R L + ++HP+ LQ+GGSN
Sbjct: 1 MDWTDRHCRYFYRLMSKHTQLYTEMITTKAILH--GDQARLLDYHQDEHPLTLQLGGSNT 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
D +A+ ++A + YDE+N+N GCPS +V G FG LM P+ V + + + +N+
Sbjct: 59 DEMARCAKIAQDWGYDEVNINAGCPSDRVQS-GSFGACLMNTPQVVADCVDAMKQVSNLS 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
++VK RIGVDD +SY++L +FI V S FIIH+RKA L G+SP ENRT+PPL Y+
Sbjct: 118 ITVKSRIGVDDMESYDELTNFISLVEK-SGCDTFIIHARKAWLKGLSPKENRTVPPLNYD 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
+ Y + +DFP LT +NGGIN +++ L K VM+GRA Y P Y L VD IY
Sbjct: 177 WVYQIKQDFPSLTIGINGGINHLEDACKHLEK-VDSVMLGRAVYHQP-YLLTDVDEIIYH 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAA 316
SS +R QV+ + Y + +R + + +L +H + FKR +
Sbjct: 235 QSSSITSREQVLLSFIDY----MKVQSQQGVPIRAMTRHILGLYHGQKNAKKFKRLLSGS 290
Query: 317 FQTCKTVKSFLEETI 331
T + +L+ T+
Sbjct: 291 SVTLDHLYEWLDFTV 305
>gi|407786170|ref|ZP_11133316.1| tRNA-dihydrouridine synthase A [Celeribacter baekdonensis B30]
gi|407201902|gb|EKE71898.1| tRNA-dihydrouridine synthase A [Celeribacter baekdonensis B30]
Length = 330
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 184/319 (57%), Gaps = 17/319 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S HA LYTEM+ A ++ +G L F+PE+HP+ +Q
Sbjct: 16 LSVAPMMDWTDRHCRYLHRLMSHHALLYTEMVTAPALV--RGGAVHLLTFNPEEHPVAVQ 73
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +AT++ + YDE+NLN GCPS +V G FG LM P+ V + ++++
Sbjct: 74 LGGSDPVELKEATKICVDHGYDEVNLNVGCPSDRVQS-GAFGAVLMKSPELVADCVTLMQ 132
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A +VPV+VKCRIGVDD + L F+ + + TR IH+RKA L+G+SP +NR
Sbjct: 133 EAAGDVPVTVKCRIGVDDQEPTEVLPAFVETMRAAGITR-MQIHARKAWLDGLSPKQNRD 191
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
IPPL Y +A+ FPDL ++NGGI +++ V L VMVGRAAY P+ LG
Sbjct: 192 IPPLDYPLAHAMKEVFPDLHLSINGGIQSLEMVEEELTY-MDGVMVGRAAYHQPYDILGA 250
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D I+G LTR +VV + Y +G + V + K +L F +PG +
Sbjct: 251 ADARIFGDTRVALTRHEVVLAMEDY----IGRHIAEGGKVAQITKHMLGLFAGQPGARRW 306
Query: 310 KR-------KADAAFQTCK 321
KR K A F+ K
Sbjct: 307 KRVLSEGAHKDGAGFELVK 325
>gi|424884841|ref|ZP_18308452.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176603|gb|EJC76644.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 333
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 179/303 (59%), Gaps = 10/303 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS+ A LYTEM+ A+ II+ G DR L +HP+
Sbjct: 6 PIFAVAPMIDWTDRHCRYFHRQISRQALLYTEMVVADAIIH--GPRDRLLGHDAAEHPLA 63
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A ++A AY YDEINLN GCPS +V G FG LML PK V E ++
Sbjct: 64 LQLGGSDPAKLAEAVKIAEAYGYDEINLNVGCPSDRVQS-GTFGACLMLTPKTVAECVAA 122
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ A T+VPV+VKCRIGVD+ + L + I V + IH+RKA L G+SP ENR
Sbjct: 123 MKAVTSVPVTVKCRIGVDEQEPEQALPELITDVLD-AGADAIWIHARKAWLKGLSPKENR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
IPPL YE Y + + +PD+ +NGGI T+DE L++ VM+GRAAYQN L
Sbjct: 182 EIPPLDYEIVYRMKQRWPDVFVGINGGIRTLDEAAVHLKQ-VDGVMLGRAAYQNA-AILS 239
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +GAP++ + ++ Y + + G ++ V + ++ F PG
Sbjct: 240 EVDQRFFGAPAAEPDWEALRDRMMAYAERHIAAGGR----LQHVARHMVGLFTGLPGARR 295
Query: 309 FKR 311
+++
Sbjct: 296 YRQ 298
>gi|407701359|ref|YP_006826146.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250506|gb|AFT79691.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Black
Sea 11']
Length = 350
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 167/265 (63%), Gaps = 8/265 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SKH LYTEM+ IIY +G+ +L ++ E+HP+ +Q
Sbjct: 22 FSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGD---YLGYNQEEHPVAVQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++AK EL+ A YDE+N+N GCPS +V +G FG LM P+ V + +
Sbjct: 79 LGGSDPSDMAKCAELSQARGYDEVNINVGCPSDRVK-NGSFGACLMAQPEVVANCVKAMQ 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VKCRIG+DD D FI V+ + FI+H+RKA L G+SP ENR I
Sbjct: 138 SAVDIPVTVKCRIGIDDMDEDEDFARFIDTVAD-AGCDTFIVHARKAWLQGLSPKENREI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L+ ++NGG+ T++E L + VMVGR Y NP Y + V
Sbjct: 197 PPLNYPRVHRLKQARPELSISINGGVKTLEETQQQL-EFVDGVMVGREVYANP-YIMATV 254
Query: 251 DTAIYG-APSSGLTRRQVVEKYQIY 274
D I+G + G++RR+VV K Q Y
Sbjct: 255 DKEIFGDTEAQGMSRREVVLKMQQY 279
>gi|443644533|ref|ZP_21128383.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|443284550|gb|ELS43555.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 332
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 10/308 (3%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R+ FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL
Sbjct: 9 RRSFTRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDES 66
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V
Sbjct: 67 EHPLALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVA 125
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + +PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+S
Sbjct: 126 DCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLS 184
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP
Sbjct: 185 PKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP 243
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L HVD ++G+ + ++R +E + Y A + + GN R ++ L F
Sbjct: 244 -YLLAHVDQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF---- 298
Query: 304 PGNGLFKR 311
PG F++
Sbjct: 299 PGARRFRQ 306
>gi|403335975|gb|EJY67174.1| TIM-barrel protein, yjbN family [Oxytricha trifallax]
Length = 419
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 191/329 (58%), Gaps = 11/329 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE-QHPIVL 69
FS+APM+D +D +R R ++ +A+LYTEML II+ + + D L +S + QHP+V
Sbjct: 42 FSIAPMVDVSDRFFRYFMRYMTPNAFLYTEMLNEHAIIHNK-HRDAILGYSGDNQHPMVC 100
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
QIGG++ +A+A + Y YDE+N+NCGCPS K GCFG LM DPK V E +
Sbjct: 101 QIGGNSPQKMAQAARIIQDYGYDEVNINCGCPSSKTR-DGCFGAVLMFDPKLVAEITREM 159
Query: 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
+ ++PV+VKCR+GVDD D Y + FI VS+ FIIH+RK LL+G+SP ENR
Sbjct: 160 MKSCSIPVTVKCRLGVDDLDKYEDVHKFIRIVSTEGGVNKFIIHARKCLLSGLSPHENRM 219
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVGRAAYQNPWYTL 247
+P L+Y++ L +DFPDL F +NGG ++ +++ G VMVGR AY PW L
Sbjct: 220 VPELRYDWVLRLKQDFPDLRFVINGGFTDPQKIQDIMKEENGLEGVMVGRLAYNFPW-AL 278
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYG--DAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+D ++G + LTR +++ Y Y + G R ++KP+++ F E
Sbjct: 279 PVIDRQLFGHSTPTLTREEIILDYAEYAQREQDQGLDRGERIPNPLLVKPVINIFSGEYE 338
Query: 306 NGLFKR-KADAAFQTC--KTVKSFLEETI 331
G F++ +D A + VK L ET+
Sbjct: 339 GGKFRKCLSDNAIKKIYKGKVKEVLLETL 367
>gi|423105940|ref|ZP_17093641.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376379248|gb|EHS92002.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 313
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 180/324 (55%), Gaps = 14/324 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTA 253
Y L RDFP LT +NGGI +++E L AH VMVGR AYQNP L VD
Sbjct: 177 PRVYQLKRDFPHLTMAINGGIKSLEEAKQHL---AHMDGVMVGREAYQNPG-ILASVDRE 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
I+G VV Y + L +N ++ V + +L F PG ++R
Sbjct: 233 IFGVEGIDADPVSVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYL 288
Query: 314 DAAFQTCKTVKSFLEETIVAIPDS 337
+ LE+ + + D
Sbjct: 289 SENAHKAGADINVLEQALKLVADK 312
>gi|335044657|ref|ZP_08537682.1| tRNA-dihydrouridine synthase A [Methylophaga aminisulfidivorans MP]
gi|333787903|gb|EGL53787.1| tRNA-dihydrouridine synthase A [Methylophaga aminisulfidivorans MP]
Length = 330
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 186/326 (57%), Gaps = 18/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD +R L RLISKH LYTEM+ +I+ G+ RFLA ++P+ LQ
Sbjct: 13 LSVAPMLDWTDRDFRYLLRLISKHTLLYTEMVTTGALIH--GDRQRFLAHDATEYPLALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+ ++ Y EINLN GCPS +V G FG LM +P+ V E ++ +
Sbjct: 71 LGGSEPAALAECAKMGEDAGYSEINLNVGCPSDRVQS-GSFGACLMAEPQLVAEGVAAMK 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK R+G+D+ DSY L DFI VS+ + FI+H+RKA L G+SP ENR +
Sbjct: 130 NAVNIPVTVKTRLGIDEQDSYQFLTDFIDAVSA-AGCETFILHARKAWLKGLSPKENRDV 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y + +D+P+L +NGGI+++ EV L K MVGRA Y +P Y L V
Sbjct: 189 PPLDYERVYQIKKDYPELHIDINGGIHSLVEVQEHL-KHVDGTMVGRAIYHDP-YLLADV 246
Query: 251 DTAIYGAPSS-GLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D I+ S L+R +V+E Y I RP ++ + + LL F +PG +
Sbjct: 247 DNVIFNQRSDYILSRHEVIEAMLPY---IEQRMKQGRP-LKSITRHLLGLFQGQPGARRW 302
Query: 310 KRKA-------DAAFQTCKTVKSFLE 328
+R DA T + S ++
Sbjct: 303 RRHLSENAHLPDAGIHTLQQALSLVD 328
>gi|284800241|ref|ZP_05985987.2| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
gi|284795603|gb|EFC50950.1| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
Length = 317
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 153/228 (67%), Gaps = 4/228 (1%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD HYR +AR I+++AWLY+EM+ + ++Y G+ DRFL+F+ + P+ LQ+GGS+
Sbjct: 1 MLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVY--GDKDRFLSFNEGEQPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA AT+ A AY Y+E+NLNCGCPSP+V G FG LM D V + ++ + +
Sbjct: 59 PHDLAIATKAAEAYGYNEVNLNCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDAVEI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD Y + DF+ + + R FI+H+R A L+G+SP ENR +PPLKY
Sbjct: 118 PVTVKHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKY 177
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
EY Y L +DFPDL +NGGI T +E+ L K VM+GR AY NP
Sbjct: 178 EYVYRLKQDFPDLEILINGGITTNEEIAEHL-KFVDGVMIGREAYHNP 224
>gi|261855785|ref|YP_003263068.1| dihydrouridine synthase [Halothiobacillus neapolitanus c2]
gi|261836254|gb|ACX96021.1| dihydrouridine synthase DuS [Halothiobacillus neapolitanus c2]
Length = 357
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 198/333 (59%), Gaps = 11/333 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F +APM+DWTD HYR LARL++++A LYTEM+ +++ G++ R L+F+ +HP+ LQ
Sbjct: 11 FCIAPMLDWTDTHYRVLARLMTRNARLYTEMVTTGALLH--GDVSRHLSFNAAEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA A L + YDEINLN GCPS +V +G FG LM P+ V + + +
Sbjct: 69 LGGSDPSDLAAAAVLGAEWGYDEINLNVGCPSDRVQ-NGSFGACLMATPEVVAKGVRAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A+ +VPV++K R+G+D DS+ FI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 128 ASVDVPVTLKTRVGIDRSDSFEAFARFIDIVAGQGGCEVFIIHARKAWLDGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGH 249
PPL+ ++ Y + +P+LTF LNG + T+ E+ A L + +MVGRAAYQ+ W L
Sbjct: 188 PPLRRDFVYRIQDAYPELTFVLNGKLETIPEMQAELARVPGGIMVGRAAYQHVDW--LRF 245
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
VD ++ + TR VV+ Y+ Y L + + ++KPLL F+ PG F
Sbjct: 246 VDQMLFDHSAPIPTRSAVVQGYRAYMLQAL----ESGTPMPPLLKPLLTLFNGLPGARAF 301
Query: 310 KRKADAAFQTCKTVKSFLEETIVAIPD-SVLDS 341
+R KT L+E + IPD LDS
Sbjct: 302 RRHLSEQGPRRKTDIHVLDEALDLIPDLDALDS 334
>gi|410619800|ref|ZP_11330691.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
gi|410160578|dbj|GAC34829.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
Length = 345
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 177/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R ISKHA LYTEM+ II+ +G+ +LA++ +HP+ LQ
Sbjct: 12 ISVAPMLDWTDKHCRYFLRKISKHALLYTEMVTTGAIIFGKGD---YLAYNDAEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 69 LGGSDPVDMARCAVLAQERGYDEVNINVGCPSDRVQ-NGRFGACLMAEPSTVAKCIEAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L DFI V+ S F +H+RKA L G+SP ENR I
Sbjct: 128 KEVDIPVTVKSRIGIDDMDEYKDLTDFISVVAD-SGCDIFTVHARKAWLKGLSPKENRDI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ YAL +FP L ++NGG+ T+D+ L K VM+GR Y NP Y L V
Sbjct: 187 PPLMYDRVYALKDEFPQLNISINGGVKTLDDTAVHLEK-LDGVMIGREVYSNP-YILADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y L+R ++V Y +A + G R ++ + +L F +PG +++
Sbjct: 245 DRRFYQDDRPVLSREEIVHAMLPYVEAQMA--GGARAW--NIARHMLGLFQGQPGGRIWR 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|350564037|ref|ZP_08932856.1| TIM-barrel protein, yjbN family [Thioalkalimicrobium aerophilum
AL3]
gi|349778037|gb|EGZ32396.1| TIM-barrel protein, yjbN family [Thioalkalimicrobium aerophilum
AL3]
Length = 351
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 175/306 (57%), Gaps = 13/306 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+++ AWLY+EM+ ++Y NL RF+ P P+VLQ
Sbjct: 14 FSVAPMLDWTDRHCRYFHRLMTQQAWLYSEMVTTGAMMYGN-NLPRFIGRDPADSPVVLQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+ L + Y+EINLN GCPS +V + G LM P+ V ++++ +
Sbjct: 73 LGGSKATELAQCARLGEEWGYNEINLNVGCPSDRVQNN-LIGACLMAHPQLVADSVAAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VKCRIG+DD + Y L DFI + + +IH+RKA L G+SP ENR +
Sbjct: 132 AAVTIPVTVKCRIGIDDQEDYQTLADFIAGLVK-AGVDGVVIHARKAWLQGLSPKENRDV 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-----GAHHVMVGRAAYQNPWY 245
PPL Y + + + DF DL ++NGG+ T+ + + L VM+GRA Y+NP Y
Sbjct: 191 PPLNYAWVHQIKADFADLAISINGGLKTLVDAKSHLSTYDNLPAVDGVMMGRAIYENP-Y 249
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD Y P ++R +V+E Y +A L G + + + ++ FH PG
Sbjct: 250 LLAEVDGLFYADPKPAISRAEVLEAIYPYIEAHLQAGG----RLSHITRHMMGLFHGCPG 305
Query: 306 NGLFKR 311
L++R
Sbjct: 306 GRLWRR 311
>gi|398796281|ref|ZP_10555894.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
gi|398203746|gb|EJM90563.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
Length = 332
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM D V + + +
Sbjct: 67 LGGSDPAALAQCAKLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMGDAALVADCIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSIPVTVKTRIGIDEQDSYEFLCDFIGTVAQQGGCDTFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPALTMAINGGIKTLEEAKLHLQH-MDGVMMGREAYQNPG-ILAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + + VV Y +A L + ++ V + +L F PG ++
Sbjct: 244 DRELFGRDTPRVDPVAVVRSMYPYIEAEL----SKGMYLGHVTRHMLGLFQGIPGARQWR 299
Query: 311 R 311
R
Sbjct: 300 R 300
>gi|146276373|ref|YP_001166532.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
gi|145554614|gb|ABP69227.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17025]
Length = 335
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 175/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H R RL+++ A LYTEM+ A +I+ G +R L FSP +HP+ LQ
Sbjct: 18 LSIAPMLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GPRERLLGFSPAEHPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A +A + +DEINLN GCPS +V GCFG LM P + + ++ +
Sbjct: 76 LGGSDPAELAQAVRVAAPHGHDEINLNVGCPSDRVQS-GCFGAVLMERPALLADCVAAMI 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + VPV+VKCRIGVD+ + L F+ V++ + RHF+IH+RKA L G+SP ENR I
Sbjct: 135 AESPVPVTVKCRIGVDEQEPAEILPAFLETVAA-AGVRHFVIHARKAWLQGLSPRENREI 193
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y A+ R FP+LT LNGG+ T+ + L +G VM+GRAAY P LG
Sbjct: 194 PPLDYPLVIAMKRRFPELTICLNGGVATLSQAEELLAQGLDGVMIGRAAYNEPELLLG-A 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D P L R V+ + Y L G + + + +L F PG ++
Sbjct: 253 DRLWGCEPPRDLDR--VLADMRPYIAEHLAAGGR----LHQITRHMLGLFSGRPGARHWR 306
Query: 311 R 311
R
Sbjct: 307 R 307
>gi|237746180|ref|ZP_04576660.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
gi|229377531|gb|EEO27622.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
Length = 328
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 182/325 (56%), Gaps = 7/325 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H R RLIS++ WLYTEM+ ++Y G++ R L FS E+HP+ LQ
Sbjct: 8 ISIAPMLDWTDRHCRYFHRLISRNTWLYTEMVTTGALLY--GDVARHLDFSEEEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+ +L + YDEINLNCGCPS +V G FG LM + K V + + +
Sbjct: 66 LGGSEPAELAQCAKLGEKWGYDEINLNCGCPSERVQ-KGAFGACLMKESKLVADCVRAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++ V+VK RIG+DD +Y+ + DFI +++ + + FI+H+R A+L G+SP ENR I
Sbjct: 125 DAVSIDVTVKHRIGIDDMHTYDFVRDFIGEIAG-AGCQTFIVHARNAILKGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L +DFP L LNGG+ T +V L K VM+GRAAY PW +
Sbjct: 184 PPLRYDVVYQLKKDFPGLEILLNGGVETAGQVEEHL-KHVDGVMIGRAAYHYPW-RMAEF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + VV Y + L YG + + + +L PG F+
Sbjct: 242 DARFYGDGTVPENPSAVVAAMIPYIEKQLALYGEKGLRMHGITRHMLGLVTGMPGARRFR 301
Query: 311 R-KADAAFQTCKTVKSFLEETIVAI 334
+ +D A + L E + A+
Sbjct: 302 QILSDPARLASGNPAAILMEALAAV 326
>gi|423126869|ref|ZP_17114548.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
gi|376396338|gb|EHT08979.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
Length = 313
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 180/324 (55%), Gaps = 14/324 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S+H LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAHCAKLAQARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTA 253
Y L RDFP LT +NGGI +++E L AH VMVGR AYQNP L VD
Sbjct: 177 PRVYQLKRDFPHLTMAINGGIKSLEEAKLHL---AHMDGVMVGREAYQNPG-ILASVDRE 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
I+G VV Y + L +N ++ V + +L F PG ++R
Sbjct: 233 IFGVEGVDADPVSVVRAIYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRRYL 288
Query: 314 DAAFQTCKTVKSFLEETIVAIPDS 337
+ LE+ + + D
Sbjct: 289 SENAHKAGADINVLEQALKLVADK 312
>gi|260575169|ref|ZP_05843170.1| TIM-barrel protein, yjbN family [Rhodobacter sp. SW2]
gi|259022791|gb|EEW26086.1| TIM-barrel protein, yjbN family [Rhodobacter sp. SW2]
Length = 325
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R ++ A LYTEM+ A +I+ G DR L + +HP+ LQ
Sbjct: 9 LSVAPMMDWTDRHCRYFHRAMTARAMLYTEMVTALAVIH--GPRDRLLGYDLAEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A LA + YDEINLN GCPS +V G FG LML P V ++ +
Sbjct: 67 LGGSDPAELAQAVRLAAPWGYDEINLNVGCPSDRVQ-SGAFGAVLMLQPALVAACVAAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ VPV+VKCRIGVDD + L F+ + + H IIH+RKA L G+SP ENR I
Sbjct: 126 DASPVPVTVKCRIGVDDQVPEDVLPAFLEMLRGVG-VGHVIIHARKAWLQGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + R+FPDLT ++NGG+ T+D+ L +G VM+GRAAY +P TL
Sbjct: 185 PPLDYPLVLRMKREFPDLTISINGGVATLDQARGLLAQGLDGVMIGRAAYHDPGATLIGA 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
DT ++G P G V+E Q Y A L G + + + +L F PG ++
Sbjct: 245 DT-LWGDP-PGRDAFGVIEAMQPYIAAHLAQGGK----LHQITRHMLGLFAGRPGARGWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|114320734|ref|YP_742417.1| tRNA-dihydrouridine synthase A [Alkalilimnicola ehrlichii MLHE-1]
gi|114227128|gb|ABI56927.1| tRNA-U16,U17-dihydrouridine synthase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 343
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 186/328 (56%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+WTD H R RL++ L+TEM+ A + + + +RFLA+S + P+ +Q
Sbjct: 21 LSVAPMMEWTDRHARYFLRLLAPRTLLFTEMVPALAVWHN--DPERFLAYSAAERPLAVQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGS+ + LA LA A++YDE+NLN GCPS +V G FG LM DP V + ++ +A
Sbjct: 79 FGGSDPEQLAHCARLAEAWSYDEVNLNVGCPSDRVQA-GAFGACLMADPGRVADCVAAMA 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T +PV+VK RIGVD DSY+ L F+ +V++ R F +H+RKA L G+SP ENR +
Sbjct: 138 ESTRLPVTVKHRIGVDHLDSYDHLTGFVDQVAAAG-CRTFYVHARKAWLQGLSPKENREV 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L LNGGI + + L +G MVGR AY NPW L
Sbjct: 197 PPLDYGRVYRLKRDFPALEVILNGGITRTETLLETLDRGLDGAMVGREAYTNPW-ALAGW 255
Query: 251 DTAIYGAPSSGL-TRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D A++GA +G+ R V + Y + L G R ++ + + +L F+ PG +
Sbjct: 256 DRALFGAAGAGVPDRHAAVRAFLPYVETELA--GGAR--LQHLARHILGLFNGCPGGRRW 311
Query: 310 KRKADAAFQTCKTVKSFLEETIVAIPDS 337
+R +E+ + +P++
Sbjct: 312 RRHISEQAHRSGAGPEVIEQALALVPEA 339
>gi|409991326|ref|ZP_11274597.1| tRNA-dihydrouridine synthase A [Arthrospira platensis str. Paraca]
gi|409937804|gb|EKN79197.1| tRNA-dihydrouridine synthase A [Arthrospira platensis str. Paraca]
Length = 331
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II G+ + L FSP + P+ LQ
Sbjct: 17 LSIAPMMDRTDRHFRYFMRQITRRPLLYTEMVTSAAII--NGDRHKLLDFSPVEKPLALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + + LA ++A + YDEINLN GCPS +V +G FG LM +P+ V EA+S +
Sbjct: 75 VGGDDPEQLATCAKIAEDWGYDEINLNVGCPSARVQ-NGNFGACLMAEPERVAEAISAMK 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + F+ +V + S + F +H+RKA L G+SP +NR I
Sbjct: 134 KAVNIPVTVKHRIGIDNRDRYEDMTAFV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +FP LT +NGG T+++V L+K VM+GRAAY NP Y
Sbjct: 193 PPLRYGDVHRLKAEFPHLTIEINGGFTTLEQVKQQLKK-VDAVMMGRAAYDNP-YLFAIA 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR QVVE+ Y + L G + V++ +L F +PG +K
Sbjct: 251 DREIYGDNINPPTRHQVVEQMLPYIENWLSQGG----RLNSVVRHILQLFAGQPGTKAWK 306
Query: 311 R 311
R
Sbjct: 307 R 307
>gi|88706546|ref|ZP_01104250.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
gi|88699258|gb|EAQ96373.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
Length = 359
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW F APMMDW+D H R RL+S+ A LYTEM+ +I+ G+ RFL F E+ PI
Sbjct: 38 PWRFCTAPMMDWSDRHCRYFWRLLSRRARLYTEMVTTGALIH--GDRQRFLQFHEEEAPI 95
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN +LA+ + A + YDE+NLNCGCPS +V +G FG LM + V + +S
Sbjct: 96 ALQLGGSNPGDLARCAKWAEDWGYDEVNLNCGCPSDRVQ-NGAFGACLMGEASLVRDCIS 154
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ + + V+VK RIG+D +SY +LCDF+ V+ + FI+H+RKA L G+SP EN
Sbjct: 155 AMRSACAIDVTVKHRIGIDHMESYEELCDFVGTVAE-GGSEVFIVHARKAWLKGLSPKEN 213
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL Y + Y L DFP+LT +NGGI ++++ L VM+GR+AY NPW L
Sbjct: 214 REVPPLNYPWVYQLKEDFPELTIVMNGGIESLEDSQTHLGH-VDGVMLGRSAYHNPW-VL 271
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD ++G R ++E Y + L + + + + LL + PG
Sbjct: 272 AEVDHRLFGDVKQPRYREDIIEAMLPYVEKELA----HGARLNQITRHLLGLYQEVPGAR 327
Query: 308 LFKR 311
++R
Sbjct: 328 RYRR 331
>gi|431931535|ref|YP_007244581.1| tRNA dihydrouridine synthase A [Thioflavicoccus mobilis 8321]
gi|431829838|gb|AGA90951.1| tRNA dihydrouridine synthase A [Thioflavicoccus mobilis 8321]
Length = 345
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RLIS+H LYTEM+ +I+ G+ RFL + +HP+VLQ
Sbjct: 31 LSVAPMLDWTDRHCRYFLRLISRHTRLYTEMVTTGALIH--GDRARFLRYDEAEHPVVLQ 88
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA T ++ + YDE+NLN GCPS +V G FG LM +P VG+ ++ +
Sbjct: 89 LGGSDPGELAACTRMSADWGYDEVNLNLGCPSDRVQS-GRFGACLMAEPALVGDCIAAMK 147
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+ K RIG+DD DSY +L F+ + + I+H+RKA L G+SP ENR I
Sbjct: 148 AAAAIPVTAKLRIGIDDRDSYEELVAFVSNLVE-AGCDALIVHARKAWLKGLSPRENREI 206
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L +FPD+ LNGG+ ++D+ L + +M+GRAAYQ+PW L
Sbjct: 207 PPLRYDWVYRLKGEFPDVPIALNGGVASLDQAVDILTR-VDGLMIGRAAYQDPWL-LAEA 264
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G P T QV+E Y + L + P ++ + + LL F PG ++
Sbjct: 265 DRLIFGDPHPVPTPHQVLEALIPYVERQL---ADGVP-LKSITRHLLGLFQGRPGARAWR 320
Query: 311 R 311
R
Sbjct: 321 R 321
>gi|418465593|ref|ZP_13036527.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755865|gb|EHK90027.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 328
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 188/329 (57%), Gaps = 22/329 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+HA LYTEM+ + II+ + + L F + P+ LQ
Sbjct: 13 FAVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDSAEQPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM + V E + +
Sbjct: 70 LGGSDPAQLKHCAQLAEQRGYQEINLNVGCPSDRVQ-NGMFGACLMANAALVAECVQQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY+ LC+FI + + + FI+H+RKA L+G+SP +NR I
Sbjct: 129 EAVRIPVTVKTRIGIDDFDSYDFLCNFIETLQQ-AGCQEFIVHARKAWLSGLSPKQNREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLISINGGIKTLDEMQRHLQQ-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T RQ VEK Y + L G Y N+ +++ +L F G
Sbjct: 246 DQALFDPNAPIVTPRQAVEKMFPYIEQQLSQGVYLNH------IVRHMLGAFQHCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEET 330
++R KA A +T F+EE
Sbjct: 300 WRRHLSENVYKAGAGINVVETALGFVEEA 328
>gi|386286577|ref|ZP_10063765.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
gi|385280374|gb|EIF44298.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
Length = 327
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 10/310 (3%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
++++ L F VAPM+DW+D H R R +S HA LYTEM+ +I+ G+ R L +S
Sbjct: 1 MSKKILDRRFCVAPMLDWSDRHCRVFWRQLSHHAVLYTEMITTGALIH--GDHKRHLDYS 58
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
+HP+ LQ+GGS+ + LA + +A ++YDE+NLNCGCPS +V +G FG LM P
Sbjct: 59 DIEHPVALQLGGSDPEALAISVRMAEQWHYDEVNLNCGCPSDRVQ-NGFFGACLMARPTL 117
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V + + + ++P++VK RIG+D+ + Y L +F+ ++ + T I+H+RKA L G
Sbjct: 118 VADCVKAMKDAGDLPITVKHRIGIDEQEGYGPLQEFVGAIAD-AGTDAIIVHARKAWLQG 176
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL Y+ Y L +DFPDL +NGGI T+++ + L +M+GR+AYQ
Sbjct: 177 LSPKENREIPPLNYDLVYQLKKDFPDLEIIINGGIQTLEDARSQLSY-VDGIMMGRSAYQ 235
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
P Y L VD Y ++G TRR ++ + Y +A L + G H + + +L F+
Sbjct: 236 TP-YLLAEVDEHFYQQAATGKTRRDIIHDFLPYIEAEL-SKGTRLNH---MTRHILGLFN 290
Query: 302 SEPGNGLFKR 311
+ G LF+R
Sbjct: 291 GQAGGKLFRR 300
>gi|291568895|dbj|BAI91167.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 337
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II G+ + L FSP + P+ LQ
Sbjct: 23 LSIAPMMDRTDRHFRYFMRQITRRPLLYTEMVTSAAII--NGDRHKLLDFSPVEKPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + + LA ++A + YDEINLN GCPS +V +G FG LM +P+ V EA+S +
Sbjct: 81 VGGDDPEQLATCAKIAEDWGYDEINLNVGCPSARVQ-NGNFGACLMAEPERVAEAISAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + F+ +V + S + F +H+RKA L G+SP +NR I
Sbjct: 140 KAVNIPVTVKHRIGIDNRDRYEDMTAFV-RVVAASGCQRFTVHARKAWLQGLSPKDNRNI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L +FP LT +NGG T+++V L+K VM+GRAAY NP Y
Sbjct: 199 PPLRYGDVHRLKAEFPHLTIEINGGFTTLEQVKQQLKK-VDAVMMGRAAYDNP-YLFAIA 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG + TR QVVE+ Y + L G + V++ +L F +PG +K
Sbjct: 257 DREIYGDNINPPTRHQVVEQMLPYIENWLSQGG----RLNSVVRHILQLFAGQPGTKAWK 312
Query: 311 R 311
R
Sbjct: 313 R 313
>gi|260779457|ref|ZP_05888347.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604266|gb|EEX30570.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
Length = 315
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 173/296 (58%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++ LYTEM+ II+ +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGD---FLAYNQEEHPVALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + +V
Sbjct: 58 PQDLATCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPLLVAECVAAMRDVVDV 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS + F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGSDQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF L +NGG+ T+D+ L VMVGR AYQNP Y L VD I+
Sbjct: 177 PRAYQLKKDFAHLNIAINGGVKTLDDTKEHLTH-LDGVMVGREAYQNP-YILAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G R QVV++ Y ++ L ++ + + +L F + PG ++R
Sbjct: 235 GLDKPVKKRTQVVQEMYPYIESQL----EKGAYLGHITRHMLGLFQNMPGARQWRR 286
>gi|257464833|ref|ZP_05629204.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
gi|257450493|gb|EEV24536.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
Length = 324
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 190/335 (56%), Gaps = 23/335 (6%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q+ FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L + P +
Sbjct: 4 QFYSGLFSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDL---LEYDPAE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
+P+ LQ+GGS+ LA +L Y E+NLN GCPS +V +G FG LM V +
Sbjct: 61 NPVALQLGGSDPAQLAHCAKLVQERGYAEVNLNVGCPSDRVQ-NGMFGACLMGKADLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+D+ DSY LCDFI K+ S FI+H+RKA L+G+SP
Sbjct: 120 CIKAMQDAVEIPVTVKHRIGIDELDSYAFLCDFIEKIQPYS--NDFIVHARKAWLSGLSP 177
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL YE Y L RDFP L ++NGGI T++E+ L + VM+GR AYQNP
Sbjct: 178 KENREIPPLDYERVYQLKRDFPHLNISINGGIKTIEEIKHHL-QFVDGVMIGREAYQNP- 235
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHS 302
LG +D+ I+ +T R+ VEK Y + L G Y N+ +++ +L F +
Sbjct: 236 SLLGEIDSQIFNENKPLVTAREAVEKMLPYIEKELAKGVYLNH------IVRHMLGAFQN 289
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLEET 330
G ++R KA A + + SF++E
Sbjct: 290 CKGARQWRRHLSENACKAGAGVEVVEQALSFVQEN 324
>gi|456967182|gb|EMG08603.1| dihydrouridine synthase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 328
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 188/324 (58%), Gaps = 9/324 (2%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H+R RLISKH +LYTEM+ +++ G+ + L++SPE+ P+ +Q+GGS+
Sbjct: 1 MDWTDRHFRYFLRLISKHTFLYTEMVHTGAVLH--GDRRKLLSYSPEELPLAIQLGGSDP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA++ ++ Y Y EINLN GCPS +V G FG LM P+ V E + + ++P
Sbjct: 59 KALAESCKIGEDYGYTEINLNVGCPSDRVR-EGNFGACLMETPEKVAELTFAMDTSVSIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
++VKCRIG+ +++ LC FI V R FI+H+R A+L G++P +NR +PPL Y
Sbjct: 118 ITVKCRIGIPGKETFEDLCKFIECVRQTGVQR-FIVHARIAILGGLTPTQNRQVPPLHYT 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y +L ++FPDL +NGGI T+ + L K VM+GRAAY+ P Y VD+ +G
Sbjct: 177 YVESLKKEFPDLLIEINGGIRTITSIRERLEKN-DGVMIGRAAYETP-YLFSEVDSLFFG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAA 316
L+RR+++ + + Y + ++ N +PH ++ +L FH E G F++
Sbjct: 235 ENLPPLSRREILLRMKDYIEEVILKEKNGKPH--HALRHMLGLFHGEKGARNFRKILTEG 292
Query: 317 FQTCKTVKSFLEETIVAIPDSVLD 340
+ + K L + I I + LD
Sbjct: 293 MYSGYS-KDLLSKAIQEISNDSLD 315
>gi|347538423|ref|YP_004845847.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345641600|dbj|BAK75433.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 316
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 176/306 (57%), Gaps = 10/306 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD HYR AR I++H WLYTEM+ ++Y G++ R L + +HP+ LQ+G
Sbjct: 1 MAPMLDWTDRHYRFFARQITRHTWLYTEMVTTGALLY--GDVARHLRYHECEHPVALQLG 58
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS D LA+ LA + YDE+NLN GCPS +V G FG LM +P+ V + + +
Sbjct: 59 GSEPDELARCARLAEEWGYDEVNLNVGCPSERVQ-KGAFGACLMAEPQLVADCVKSMRDA 117
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
+ V+VK RIG+D + Y + DF+ + + FI+H+R A+L G+SP ENR IPP
Sbjct: 118 VGIDVTVKHRIGIDAVEDYGYVRDFVGHIVE-AGCATFIVHARNAILKGLSPKENREIPP 176
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
LKY+Y Y L RDFPD+ LNGG+ + DE+ L+ VMVGR AY NPW + D
Sbjct: 177 LKYDYVYRLKRDFPDVEILLNGGVKSNDEIAGHLQH-VDGVMVGREAYHNPW-LMADWDA 234
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
Y + +R VVE Y + L G +R V + +L + PG ++R
Sbjct: 235 RFYDDAHTEASRDAVVEVMLPYIEQRLAEPGTQ---LRHVARHILGLYQGLPGARAWRRM 291
Query: 313 -ADAAF 317
+DAA
Sbjct: 292 LSDAAL 297
>gi|226326586|ref|ZP_03802104.1| hypothetical protein PROPEN_00436 [Proteus penneri ATCC 35198]
gi|225205011|gb|EEG87365.1| tRNA dihydrouridine synthase A [Proteus penneri ATCC 35198]
Length = 344
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 160/253 (63%), Gaps = 6/253 (2%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+++Y FSVAPM+DWTD H R R +SK+ LYTEM+ II+ +G+ +L +S
Sbjct: 20 SKKYNLNRFSVAPMLDWTDRHCRYFFRQLSKNTLLYTEMVTTGAIIHGKGD---YLKYSE 76
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM D + V
Sbjct: 77 EEHPVSLQLGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGDAQLV 135
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + ++PV+VK RIG+DD DSY LCDFI VS + FIIH+RKA L+G+
Sbjct: 136 ANCVKAMRDVVDIPVTVKTRIGIDDQDSYEFLCDFIETVSRDNNCDTFIIHARKAWLSGL 195
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR +PPL Y Y L RDF LT +NGGI +++E L K VMVGR AYQN
Sbjct: 196 SPKENREVPPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAKEHL-KHMDGVMVGREAYQN 254
Query: 243 PWYTLGHVDTAIY 255
P L HVD ++
Sbjct: 255 P-SILAHVDHELF 266
>gi|71279069|ref|YP_267111.1| tRNA-dihydrouridine synthase A [Colwellia psychrerythraea 34H]
gi|71144809|gb|AAZ25282.1| TIM-barrel protein, yjbN family [Colwellia psychrerythraea 34H]
Length = 335
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 175/282 (62%), Gaps = 7/282 (2%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+AR + SVAPM+DWTD H R RL+++H LYTEM+ I+ +G+ +L+++
Sbjct: 11 IARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGD---YLSYN 67
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
+HP+VLQ+GGS++ + + ++A Y YDE+N+N GCPS +V +G FG LM +P
Sbjct: 68 DAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQ-NGRFGACLMAEPAL 126
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V + ++ + + TN+PV+VK RIG+DD DSY L FI +VS + RHFIIH+RKA L G
Sbjct: 127 VAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSK-ADCRHFIIHARKAWLTG 185
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP +NR +PPL Y+ Y + DF DL ++NGGI T E N L+ VM+GR Y
Sbjct: 186 LSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH-IDGVMIGREIYN 244
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYG 283
+P Y L D IY + + L+R +V++ Y D + G
Sbjct: 245 SP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDETIANGG 285
>gi|56752036|ref|YP_172737.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 6301]
gi|81300875|ref|YP_401083.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 7942]
gi|56686995|dbj|BAD80217.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169756|gb|ABB58096.1| TIM-barrel protein, yjbN family [Synechococcus elongatus PCC 7942]
Length = 343
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 187/333 (56%), Gaps = 14/333 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+D TD H R R IS+ LYTEM+ A+ I Y G+ R L + P++HP+ LQ
Sbjct: 19 LSVAPMLDRTDRHCRYFLRQISRRTLLYTEMIVAQAIQY--GDRARLLDYDPQEHPVALQ 76
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA +A + YDEINLN GCPS +V G FG LM P+ V + + +
Sbjct: 77 VGGDNPQWLADCARIAEDWGYDEINLNVGCPSDRVQ-KGQFGACLMARPEQVAQCVEAMR 135
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ + +PV+VK RIG+DD DSY +L DF+ ++ + S F +H+RKA L G+ P +NRTI
Sbjct: 136 SASTLPVTVKHRIGIDDRDSYEELQDFV-RIVAESGCDRFSVHARKAWLQGLDPKQNRTI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L +DFP L +NGGI +D+ L++ VM+GRA Y NP Y L
Sbjct: 195 PPLRYDVVYQLKQDFPQLVIEINGGILDLDQAQQHLQQ-VDAVMMGRAIYDNP-YLLAAA 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +YG +R QVV Y + L R H + + LL FH PG+ +K
Sbjct: 253 DAQLYGDHLEPRSRLQVVLAMMPYIEQQLSQ--GVRLH--SITRHLLQLFHGCPGSRAWK 308
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLDSPI 343
R Q CK E ++A + V +SPI
Sbjct: 309 RVLTE--QGCKPGAG--PEVLLAALEQVSESPI 337
>gi|119946739|ref|YP_944419.1| tRNA-dihydrouridine synthase A [Psychromonas ingrahamii 37]
gi|119865343|gb|ABM04820.1| tRNA-U16,U17-dihydrouridine synthase [Psychromonas ingrahamii 37]
Length = 330
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 179/301 (59%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R++SK+ LY+EM+ I+Y +G+ +L +HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFHRVMSKNTLLYSEMVTTGAILYGKGD---YLQKDAAEHPVCLQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + +DEINLN GCPS +V +G FG LM + + VG+A+ +
Sbjct: 72 LGGSAPVDLATSALAGKERGFDEINLNVGCPSDRVQ-NGRFGACLMSEGELVGDAIKAMK 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PVSVK RIG+DD DSY LCDF+ KV+ F++H+RKA L+G+SP +NR +
Sbjct: 131 DATGLPVSVKTRIGIDDLDSYAFLCDFVGKVAE-KGCDTFVVHARKAWLSGLSPKQNRDV 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFP LT +NGGI T+DE L+ VM+GR Y NP Y L V
Sbjct: 190 PPLDYERVYQLKKDFPQLTIAINGGIKTLDECETHLQY-LDGVMLGREIYTNP-YLLSSV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ LTR +V+EK Y + L +N + + V + +L F PG ++
Sbjct: 248 DQRLFAGNEKILTRFEVLEKMYPYIEQQL----SNGAYFKHVARHMLGLFQGLPGARAWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|293394136|ref|ZP_06638436.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
gi|291423114|gb|EFE96343.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
Length = 349
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 176/308 (57%), Gaps = 10/308 (3%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R Y FS+APM+DWTD H R RL+SK LYTEM+ I++ +G+ +LA+S E
Sbjct: 21 RNYPLCRFSIAPMLDWTDRHCRYFHRLLSKETLLYTEMVTTGAIVHGKGD---YLAYSEE 77
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HPI LQ+GGS+ LA +LA YDEINLN GCPS +V +G FG LM V
Sbjct: 78 EHPIALQLGGSDPAALAHCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGQATLVA 136
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + ++PV+VK RIG+D+ DSY LCDFI V+ F IH+RKA L+G+S
Sbjct: 137 DCIKAMRDVVSIPVTVKTRIGIDEQDSYAFLCDFIETVAGRGECEMFTIHARKAWLSGLS 196
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P +NR +PPL Y Y L RDFP LT +NGG+ T+DE L+ VM+GR AYQNP
Sbjct: 197 PKQNREVPPLDYPRVYQLKRDFPALTIAINGGVKTLDEARQHLQH-LDGVMMGREAYQNP 255
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
L VD ++G+ + +E Y + L N ++ + + +L F
Sbjct: 256 GILL-QVDRELFGSQAPLQDSVAAIEALYPYIERELA----NGTYLGHITRHILGLFQGI 310
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 311 PGARQWRR 318
>gi|238918205|ref|YP_002931719.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
gi|238867773|gb|ACR67484.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
Length = 349
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+ E+HP+ LQ
Sbjct: 31 FSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYCEEEHPLALQ 87
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 88 LGGSNPADLARCARLAETRGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 146
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI V+ FI+H+RKA L+G+SP ENR +
Sbjct: 147 DVVSIPVTVKTRIGIDEQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPRENREV 206
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT LNGG+ +DE A L+ VMVGR AY NP L V
Sbjct: 207 PPLDYPRVYRLKQDFPHLTIALNGGVKRLDEARAHLQH-VDGVMVGREAYHNPG-ILAQV 264
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++ A ++ VV Y +G ++ + + +L F PG ++
Sbjct: 265 DSQLFDADAAVPDSVAVVRALYPY----IGRELAQGTYLGHITRHILGLFQGIPGARQWR 320
Query: 311 R 311
R
Sbjct: 321 R 321
>gi|410632529|ref|ZP_11343187.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
gi|410147955|dbj|GAC20054.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
Length = 337
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 178/301 (59%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R IS+HA LYTEM+ II+ +G+ +LA++ E+HP+ LQ
Sbjct: 9 ISVAPMLDWTDKHCRYFLRKISQHALLYTEMVTTGAIIFGKGD---YLAYNQEEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ A Y YDE+N+N GCPS +V +G FG LM +P+ V +S +
Sbjct: 66 LGGSDPTDMARCAGEAQKYGYDEVNINVGCPSDRVQ-NGRFGACLMAEPETVAACISSMQ 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD D Y L FI V + S FI+H+RKA L G+SP +NR +
Sbjct: 125 AEVDIPVTVKSRIGIDDMDEYEDLTRFI-DVVAASGCDTFIVHARKAWLKGLSPKQNRDV 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L + FPDL +LNGG+ T+D+V L VM+GR Y NP Y L V
Sbjct: 184 PPLMYDRVYQLKQQFPDLHISLNGGVKTLDDVQLHLNY-LDGVMIGREVYSNP-YILAEV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y + TR +VV Y + + RP + + +L F +PG +++
Sbjct: 242 DNRFYQDNAVIKTRAEVVMSMLPYVEQQIAL--GARPW--HIARHMLGLFQGQPGGRIWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|387902163|ref|YP_006332502.1| trNA dihydrouridine synthase A [Burkholderia sp. KJ006]
gi|387577055|gb|AFJ85771.1| tRNA dihydrouridine synthase A [Burkholderia sp. KJ006]
Length = 328
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 8/269 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R +++ WLYTEM+ +++ G+ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRDTWLYTEMITTGALLF--GDAQRHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAQ-AGCDTFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKRDFPALEIVINGGIKTLDEVAEHLEH-VDGVMLGREAYHNP-YVLAGVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTY 282
G+ + TR + K Y A L GTY
Sbjct: 235 GSTAPAPTREEAEAKLIEYCAAELKRGTY 263
>gi|406937212|gb|EKD70739.1| hypothetical protein ACD_46C00424G0003 [uncultured bacterium]
Length = 317
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM+ TD H R RLI+ H LYTEM+ +I+ G+ RFLAF P +HP+ LQ
Sbjct: 6 ISIAPMMNCTDRHNRYFLRLIAPHVLLYTEMITTGALIH--GDCTRFLAFDPLEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS D LA L + YDEINLN GCPS +V G FG LML+P V E ++ +
Sbjct: 64 LGGSEPDKLAYCARLGEEFGYDEINLNVGCPSNRVKA-GRFGACLMLEPDLVAECVAAMH 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VKCRIGVD DSY L FI KV+ + F+IH+RKA L GISP +NR I
Sbjct: 123 SAVKIPVTVKCRIGVDQQDSYAALVQFIEKVAQ-AGCHIFVIHARKAWLTGISPKQNRDI 181
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ + +DFP ++ +NGGI T+ ++ L+ VM+GR AY NP++ L +
Sbjct: 182 PPLQYDIVKNIKQDFPHVSIIMNGGIKTLHDIQRHLQY-VDGVMIGREAYANPYF-LAAI 239
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
+ + S LTR +++K+ Y L N+ + + + +L + + G +++
Sbjct: 240 EEQFFA--KSVLTRHTIIKKFIPYIQVQL----RNKVKLSSITRHILGLYQGQKGARIWR 293
Query: 311 R 311
R
Sbjct: 294 R 294
>gi|424071655|ref|ZP_17809078.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998743|gb|EKG39144.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 339
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 10/305 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++G+ + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR 311
F++
Sbjct: 309 RRFRQ 313
>gi|121605287|ref|YP_982616.1| tRNA-dihydrouridine synthase A [Polaromonas naphthalenivorans CJ2]
gi|120594256|gb|ABM37695.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas naphthalenivorans
CJ2]
Length = 337
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 178/304 (58%), Gaps = 10/304 (3%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDW+D H R RL+S+HA LYTEM+ +I+ G++ R L F+ E+HP+
Sbjct: 16 PWRLSVAPMMDWSDRHCRYFHRLLSRHALLYTEMVTTGALIH--GDVGRHLRFNAEEHPV 73
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA L + Y EIN+NCGCPS +V G FG LM +PK V + +
Sbjct: 74 ALQLGGSEPADLAHCARLGEQWGYSEININCGCPSERVQ-RGAFGACLMAEPKLVADCVK 132
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIG+D + Y + DF+ VS + FI+H+R A L G+SP EN
Sbjct: 133 AMVDAVSVPVTVKHRIGIDREERYEFVRDFVGTVSE-AGCDTFIVHARNAWLKGLSPKEN 191
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+YE + L ++F LT +NGGI T ++V L + VM+GR AY NPW+ L
Sbjct: 192 REVPPLRYELVHRLKKEFAHLTICVNGGITTGEQVQGQLLE-LDGVMIGREAYHNPWW-L 249
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D +GA +TR QV + Q+ + G+ P + + +L H PG+
Sbjct: 250 ASWDADFFGAGGESITREQV--EAQMCDYMVREAAGHGTP-FSAIARHMLGLRHGLPGSR 306
Query: 308 LFKR 311
+++
Sbjct: 307 RWRQ 310
>gi|392536593|ref|ZP_10283730.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas marina mano4]
Length = 324
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 188/326 (57%), Gaps = 11/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ
Sbjct: 10 FSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNQHEGPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 67 LGGSDPEALAKCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPELVAQCVAAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +
Sbjct: 126 NEVSIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +D+ L ++NGG+ T+++ L+ VMVGR AY NP + L V
Sbjct: 185 PPLDYPRVYQLKKDYQQLDLSINGGVKTIEQSLEHLQY-IDGVMVGREAYSNP-FMLNEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG ++ TR VV Y + + G N H V + +L F +PG F+
Sbjct: 243 DEKIYGDTANTQTRHDVVRSMYDYIEEEM-RLGANFWH---VARHMLGIFQGQPGARGFR 298
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R + S +++ + +P+
Sbjct: 299 RHLSENGHGKQADLSVMDKALSFVPE 324
>gi|126725475|ref|ZP_01741317.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium HTCC2150]
gi|126704679|gb|EBA03770.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium HTCC2150]
Length = 337
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 155/245 (63%), Gaps = 4/245 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R +SK++ LYTEM+ A II G+ +R L F +HP+ +Q
Sbjct: 17 LSVAPMMDWTDRHCRYFHRQLSKNSLLYTEMVTAPAII--NGDRERLLGFDATEHPVAVQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN L +AT ++ + YDE+NLNCGCPS +V G FG LM P V E +S +
Sbjct: 75 LGGSNPAQLQQATAISCDFGYDEVNLNCGCPSDRVQS-GYFGAVLMAKPDLVAECVSEMK 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A NV ++VKCRIGVDD D L +F+ KVS+ TR F IH+RKA L G+SP ENR I
Sbjct: 134 AAANVEITVKCRIGVDDQDPQTVLPNFLAKVSAAGVTR-FTIHARKAWLQGLSPKENRDI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + + +FP L ++NGG+ T+++ + + +G VM+GRAAY P L
Sbjct: 193 PPLDYDIVHQMKAEFPHLHISINGGVTTLEQASGLIEQGLDGVMIGRAAYHQPADILCDA 252
Query: 251 DTAIY 255
D I+
Sbjct: 253 DELIF 257
>gi|109900349|ref|YP_663604.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|109702630|gb|ABG42550.1| tRNA-U16,U17-dihydrouridine synthase [Pseudoalteromonas atlantica
T6c]
Length = 345
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 176/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R ISKH+ LYTEM+ II+ +G+ +LAF+ +HP+ LQ
Sbjct: 12 ISVAPMLDWTDKHCRYFLRQISKHSLLYTEMVTTGAIIFGKGD---YLAFNDTEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ LA YDE+N+N GCPS +V +G FG LM +P+ V + +
Sbjct: 69 LGGSDPVDMARCAVLAQEQGYDEVNINVGCPSDRVQ-NGRFGACLMAEPETVAACIQAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L DFI V+ + F +H+RKA L G+SP ENR I
Sbjct: 128 KEVDIPVTVKSRIGIDDMDEYKDLTDFIQIVAD-AGCDIFTVHARKAWLKGLSPKENRDI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ YAL +FP L ++NGG+ T+D+ L K VM+GR Y NP Y L V
Sbjct: 187 PPLMYDRVYALKEEFPQLNLSINGGVKTLDDATMHLEK-LDGVMIGREVYSNP-YILADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y S +R ++V Y +A + + ++ + +L F +PG +++
Sbjct: 245 DKLFYQDDSPVPSREEIVHAMLPYVEAQMASGA----RAWNIARHMLGLFQGQPGGRIWR 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|407696288|ref|YP_006821076.1| tRNA-dihydrouridine synthase A [Alcanivorax dieselolei B5]
gi|407253626|gb|AFT70733.1| tRNA-dihydrouridine synthase A [Alcanivorax dieselolei B5]
Length = 328
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 179/324 (55%), Gaps = 10/324 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+T YR LARLIS+H LYTEM+ A+ +I+ G+ +R L F +HP+ +Q
Sbjct: 14 LSVAPMMDYTTRDYRYLARLISRHTLLYTEMVVAQAVIH--GDRERLLGFDDAEHPVAVQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + Y YDEINLN GCPS +V G G LM +P V + +A
Sbjct: 72 LGGSDPAQLAEAARICADYGYDEINLNVGCPSDRVQ-QGKIGAVLMAEPDLVARCVEAMA 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ VPV+VK RIG+DD D Y L F+ ++ S + R IH+RKA+LNG+SP ENR I
Sbjct: 131 RVSAVPVTVKTRIGIDDQDDYPFLQRFVARMDS-AGCRSLTIHARKAILNGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE YA+ + FP L LNGG+ + V L + +M+GR AY NPW L +
Sbjct: 190 PPLIYERAYAIKQAFPHLEVILNGGLRDLPSVLHHLDQ-VDGLMIGREAYGNPW-CLAGL 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G P+ R QV + Y L H + V++ L+ F PG ++
Sbjct: 248 DATVFGDPAPQPDRHQVARAFLPY----LEQRYAGGCHPKHVLRHALNLFQGIPGARAYR 303
Query: 311 RKADAAFQTCKTVKSFLEETIVAI 334
R T E+ + +
Sbjct: 304 RHLSENMHKADTTPKVFEDALALV 327
>gi|386826391|ref|ZP_10113498.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
gi|386427275|gb|EIJ41103.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
Length = 332
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 174/301 (57%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+VAPM+DWTD H R RL+S LY+EM+ II+ G+ DRFL F P +HP+ LQ
Sbjct: 6 IAVAPMLDWTDRHDRYFLRLLSPSVLLYSEMVTTGAIIH--GDRDRFLRFHPSEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +A Y Y E+NLN GCPS +V G FG LM P V + ++ +
Sbjct: 64 LGGSDPQALADCARIAKDYGYAEVNLNVGCPSDRVQS-GQFGACLMATPALVADCVATMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+P++VK RIG+D+ DSY LC FI ++ + FIIH+RKA L G+SP ENR I
Sbjct: 123 QAVNIPITVKSRIGIDELDSYEHLCHFIQTIAQ-AGCDTFIIHARKAWLQGLSPKENREI 181
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + + DFP LT +NGG+ T+ +V L K VM+GR AYQNP Y L +
Sbjct: 182 PPLCYDVVHQIKTDFPHLTIIINGGLKTIADVEQQLLK-VDGVMIGREAYQNP-YLLADL 239
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
+ + TR+ +VE+ Y I + R ++ ++ + LL F E G ++
Sbjct: 240 EQHFFNPNYQKPTRQAIVEQMIPY---ITAELDSGRAYLANITRHLLGLFQGECGARHWR 296
Query: 311 R 311
R
Sbjct: 297 R 297
>gi|416168181|ref|ZP_11607884.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
gi|325130878|gb|EGC53608.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
Length = 336
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 170/274 (62%), Gaps = 6/274 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++AWLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FPDL +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPDLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 242 -MVMHEWDRLFYGDTRSPIEYSDLVQRLYTYSQA 274
>gi|289679765|ref|ZP_06500655.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
Length = 339
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 179/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP+ LQ
Sbjct: 23 FSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDESEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 81 LGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+SP ENR I
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLSPKENRDI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y L HV
Sbjct: 199 PPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAHV 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + ++R +E + Y A + + GN R ++ L F PG F+
Sbjct: 257 DQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGARRFR 312
Query: 311 R 311
+
Sbjct: 313 Q 313
>gi|419838647|ref|ZP_14362070.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
gi|386910237|gb|EIJ74896.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
Length = 329
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 186/325 (57%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKHCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPQLTIAINGGIKTIEEIKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ ++ +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFAPNAAIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|192359553|ref|YP_001981977.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
gi|190685718|gb|ACE83396.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
Length = 341
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 183/301 (60%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F++APMM+W+ + RT R++++ A LY+EM+ ++Y G+ RFL ++ +HP+ LQ
Sbjct: 17 FTLAPMMEWSTSDCRTFWRILTQRAVLYSEMVTTGALLY--GDRKRFLDYNACEHPLALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +A + YDE+NLNCGCPS +V +G G LM +P+ V E ++ +
Sbjct: 75 LGGSDPRALAECARIAEGWGYDEVNLNCGCPSDRVQ-NGMIGACLMAEPQLVAECIAAMQ 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L F+ +++ + FI+H+RKA L G+SP ENR I
Sbjct: 134 QAVSIPVTVKHRIGIDDMDDYEGLETFVRTIAA-TGCNTFIVHARKAWLKGLSPKENREI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L +DFP L +NGGI T+++ + AL + VMVGR AY NP Y L V
Sbjct: 193 PPLQYDKVYQLKQDFPHLNIIINGGITTLEQ-SQALLEHVDGVMVGREAYSNP-YLLAQV 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +YG ++R QV + + Y + L G H + + +L + +PG F+
Sbjct: 251 DQTLYGESRPVISRDQVTQAFIAYCEEQLAK-GARLNH---LTRHILGLYQGQPGARQFR 306
Query: 311 R 311
R
Sbjct: 307 R 307
>gi|152996532|ref|YP_001341367.1| tRNA-dihydrouridine synthase A [Marinomonas sp. MWYL1]
gi|150837456|gb|ABR71432.1| TIM-barrel protein, yjbN family [Marinomonas sp. MWYL1]
Length = 341
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 182/315 (57%), Gaps = 22/315 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNL-DRFLAFSPEQHPIVL 69
FS+APMMDWT + YR AR +SK+ LYTEM+ ++ QGN +RFL + +HPI L
Sbjct: 20 FSIAPMMDWTTSDYRVFARTLSKNTLLYTEMVTTGALL--QGNHPERFLRYDECEHPIAL 77
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
Q+GGS+ L K ++A +DE+NLN GCPS +V + G LM P V EAM +
Sbjct: 78 QLGGSDAVALGKCAKMAEQAGFDEVNLNVGCPSDRVQ-NSLIGACLMAHPDKVKEAMRAM 136
Query: 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
N ++PV++K RIG+DD + Y+ + DF+ V++ T FI+H+R A+L G+SP ENR
Sbjct: 137 QDNCSIPVTIKHRIGLDDQEDYSVVRDFVGDVATTGVTT-FIVHARNAILEGLSPKENRE 195
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTL 247
+PPLKY Y + L +DFPDL +NGGI T+DE L AH VMVGR AY NPW L
Sbjct: 196 VPPLKYHYVHQLKKDFPDLEIIINGGIKTLDECKEQL---AHVDGVMVGREAYHNPW-IL 251
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD ++G R + +E + Y + L G H + + +L F E G
Sbjct: 252 SQVDEVLFGGQPLVNDRYEALEAFVPYVERKL-QEGERLMH---LTRHILGIFQGEAGGK 307
Query: 308 LFKR-------KADA 315
F+R KADA
Sbjct: 308 QFRRYLSENGHKADA 322
>gi|300714901|ref|YP_003739704.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
gi|299060737|emb|CAX57844.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
Length = 331
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 195/336 (58%), Gaps = 13/336 (3%)
Query: 5 QYLPP-WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LP FSVAPM+DWTD H R R +++H+ LYTEM+ I++ +G+ +LA++
Sbjct: 3 QILPAHRFSVAPMLDWTDRHCRYFLRQLTRHSLLYTEMVTTGAIVHGKGD---YLAWNQA 59
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GG + LA+ + A A Y+EINLN GCPS +V +G FG LM +P V
Sbjct: 60 EQPVALQLGGYDAAALAECAKQAEARGYNEINLNVGCPSDRVQ-NGRFGACLMGEPALVA 118
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + ++PV+VK RIG+D+ DSY LC+FI +VS FIIH+RKA L+G+S
Sbjct: 119 DGIKAMRDQVSIPVTVKTRIGIDEQDSYEFLCEFIRQVSEQGGCDSFIIHARKAWLSGLS 178
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL YE Y L RDFP LT ++NGGI ++ E L+ VM+GR AYQNP
Sbjct: 179 PKENREIPPLDYERVYQLKRDFPHLTMSINGGIKSLAEAKVHLQH-VDGVMMGREAYQNP 237
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
L VD ++G+ VV Y +A L N ++ + + +L F
Sbjct: 238 GL-LAQVDRELFGSELPAPDPVAVVRAMYPYIEAELA----NGTYLGHITRHMLGLFQGI 292
Query: 304 PGNGLFKRK-ADAAFQTCKTVKSFLEETIVAIPDSV 338
PG ++R ++ A + +++ +E+ + + D +
Sbjct: 293 PGARQWRRHLSENAHKPGANIET-VEQALALVADKI 327
>gi|419803161|ref|ZP_14328335.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|419844573|ref|ZP_14367861.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
gi|385188331|gb|EIF35818.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|386417233|gb|EIJ31720.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
Length = 328
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 192/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SK+A LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG++ L +LA Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGNDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+PV+VK RIG+DD DSY LCDFI KV + + FI+H+RKA L+G+SP ENR I
Sbjct: 129 SVVNIPVTVKTRIGIDDLDSYEFLCDFIEKVHH-AGCQEFIVHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L +DFP LT +NGGI T++E+ L + VMVGR AYQNP LG+V
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKHHL-QFVDGVMVGREAYQNP-SLLGYV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A ++ +T RQ VE Y + L G Y N+ +++ +L F + G
Sbjct: 246 DQMLFDANANIVTPRQAVEAMFPYIEKQLSQGVYLNH------IVRHMLGAFQNCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T SF+E
Sbjct: 300 WRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|343518517|ref|ZP_08755507.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343393432|gb|EGV05987.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 328
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 187/327 (57%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R ++HA LYTEM+ A II+ + LAF ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFTRHALLYTEMVTAPAIIHATYD---HLAFDCAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y EINLN GCPS +V +G FG LM VG + +
Sbjct: 70 LGGSDPQQLAHCAKLAATRGYQEINLNVGCPSDRVQ-NGMFGACLMAKADLVGACVQAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ DSY L DFI ++ + R FI+H+RKA L+G+SP ENR I
Sbjct: 129 AEVDIPVTVKTRIGIDELDSYEFLTDFIARIQQ-AGCREFIVHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L DFP+L +NGGI T++E+ L + VMVGR AYQNP LG V
Sbjct: 188 PPLDYARVYRLKADFPELKIAINGGIKTLEEMQTHL-QFVDGVMVGREAYQNP-SLLGGV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + ++ RQ V Y +A L G Y N+ +++P+L F G
Sbjct: 246 DRALFDPNAPLISARQAVTAMFPYLEAQLSQGVYLNH------LIRPMLGAFQQVKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R KA A + +T SF+E
Sbjct: 300 WRRYLSENAHKAGAGVEVVETALSFVE 326
>gi|416464894|ref|ZP_11716492.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322642507|gb|EFY39107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
Length = 310
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 179/319 (56%), Gaps = 10/319 (3%)
Query: 19 WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDN 78
WTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 WTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDPAQ 57
Query: 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS 138
LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+
Sbjct: 58 LAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVT 116
Query: 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198
VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 VKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 176
Query: 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAP 258
Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP L VD I+GA
Sbjct: 177 YQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGAD 234
Query: 259 SSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 318
++ VV Y + L + ++ + + +L F PG ++R
Sbjct: 235 TTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAH 290
Query: 319 TCKTVKSFLEETIVAIPDS 337
+ LE+ + + D
Sbjct: 291 KAGADVAVLEQALKLVADK 309
>gi|378775268|ref|YP_005177511.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
gi|356597816|gb|AET16542.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
Length = 327
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 189/326 (57%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + ++ +
Sbjct: 70 LGGSDPAQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVNAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDF L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFAHLHMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R K A + + SF+
Sbjct: 300 WRRYLSENAHKTGAGLEVVEKALSFV 325
>gi|124267105|ref|YP_001021109.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
gi|124259880|gb|ABM94874.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
Length = 352
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 6/253 (2%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
RQ+ P SVAPMMDWTD H R RL+S+H LYTEM+ +++ G++ R L F PE
Sbjct: 23 RQWNPWRLSVAPMMDWTDRHCRHFHRLLSRHTRLYTEMVTTGALLH--GDVPRHLDFGPE 80
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS ++LA +L + YDEINLNCGCPS +V G FG LM +P V
Sbjct: 81 EHPVALQLGGSEPEDLAACAKLGERWGYDEINLNCGCPSERVQ-RGAFGACLMAEPDLVA 139
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + +PV+VK RIG+D +SY + DFI V++ + FI+H+R A L G+S
Sbjct: 140 DGVKAMRDAVGIPVTVKHRIGIDRTESYGFVRDFIGTVAA-AGCEVFIVHARNAWLKGLS 198
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPL++E+ Y L RDFP LT LNGG+ T DE+ L + VM+GR AY +P
Sbjct: 199 PKENRELPPLRHEWVYRLKRDFPALTIVLNGGVKTHDEIATHLAQ-VDGVMLGREAYHHP 257
Query: 244 WYTLGHVDTAIYG 256
W + D +G
Sbjct: 258 WL-MADWDVRFFG 269
>gi|410645346|ref|ZP_11355812.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
gi|410135118|dbj|GAC04211.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
Length = 345
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 178/301 (59%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R ISKHA LYTEM+ II+ +G+ +LAF+ +HP+ LQ
Sbjct: 12 ISVAPMLDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGD---YLAFNEAEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ LA YDE+N+N GCPS +V +G FG LM +PK V + ++ +
Sbjct: 69 LGGSDPADMARCAVLAQERGYDEVNINVGCPSDRVQ-NGRFGACLMAEPKTVADCINAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L DFI +V + + F +H+RKA L G+SP ENR I
Sbjct: 128 KEVDIPVTVKSRIGIDDMDEYKDLTDFI-QVIADAGCEIFTVHARKAWLKGLSPKENRDI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ YAL +FP L ++NGG+ T+D+ L K VM+GR Y NP Y L V
Sbjct: 187 PPLMYDRVYALKEEFPHLNLSINGGVKTLDDAALHLDK-LDGVMIGREVYSNP-YILADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y + +R ++V Y + + + ++ + +L F +PG +++
Sbjct: 245 DKRFYQDQTPVPSREEIVHAMLPYVEKQMASGA----RAWNIARHMLGLFQGQPGGRVWR 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|424863218|ref|ZP_18287131.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86A]
gi|400757839|gb|EJP72050.1| tRNA-dihydrouridine synthase A [SAR86 cluster bacterium SAR86A]
Length = 323
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 194/330 (58%), Gaps = 19/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APMM +TD H R L RLISK +LYTEM+A ++++ G L F+ E+HP+ +Q
Sbjct: 9 LCIAPMMQYTDMHDRYLLRLISKKVFLYTEMIATGSLVH--GKCFEQLEFNNEEHPVGVQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN+++L + ++ Y YDEINLNCGCPS +V G FG LML+P+ V ++ +
Sbjct: 67 LGGSNINDLIECSKKCEEYGYDEINLNCGCPSDRVQ-KGRFGACLMLEPEHVANCLAEMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV++KCR+GVD H+SY + +FI V S + FIIH+R +L G+SP +NR I
Sbjct: 126 NAVEIPVTIKCRLGVDHHESYEFIHNFISTVKK-SGIKTFIIHARNGILKGLSPRQNRNI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L +DFP+L +NGGI +++ L K VM+GR+AY NP + L +
Sbjct: 185 PPLKYDYVYKLKQDFPELDIVINGGIKNLEQSQMHL-KYVDGVMIGRSAYDNP-FMLKDI 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
+ I+ ++++++ KY Y + I + G+N P K L H F GL K
Sbjct: 243 EKIIFNEEPLVKSKKEILNKYLDYVE-IKASEGHNLP------KMLKHLF------GLSK 289
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVLD 340
+A K +++ + ++ + + D
Sbjct: 290 GDKNAKNFRLKIIEAMKNNEVTSVRNDLED 319
>gi|387886780|ref|YP_006317079.1| tRNA-dihydrouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871596|gb|AFJ43603.1| tRNA-dihydrouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 324
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 187/321 (58%), Gaps = 13/321 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI+KH LYTEM+ II+ GN D L ++PE++P+ LQ
Sbjct: 8 ICIAPMLDWTDKHYRYMMRLITKHTMLYTEMITLNAIIH--GNKDFLLKYNPEENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG L++ +LA + Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVLEDFITCGKLAQSLGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N ++P+SVKCRIG D +DSY L +F+ K + + IH+RK LNG+SP ENRTI
Sbjct: 125 DNLDIPISVKCRIGYDYNDSYKDLYNFVNKQVQ-AGVDYLCIHARKGWLNGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y + +DFP+L +NGGI T+++ L K VM+GR AY NP
Sbjct: 184 PELKYDIVYNIKKDFPNLELGINGGITTIEDTQEHL-KHVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P ++ +V + Y L N P++R + K L+ F+ P +
Sbjct: 242 DNLFYNHPIKDISPLEVAYEMAEYIKIQLS----NDPNMRLNNTTKHTLNLFNGLPNAKI 297
Query: 309 FKRK-ADAAFQTCKTVKSFLE 328
F+R ++ A + V +FL+
Sbjct: 298 FRRYLSENATKKDANVDTFLK 318
>gi|332304623|ref|YP_004432474.1| yjbN family TIM-barrel protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332171952|gb|AEE21206.1| TIM-barrel protein, yjbN family [Glaciecola sp. 4H-3-7+YE-5]
Length = 345
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 178/301 (59%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R ISKHA LYTEM+ II+ +G+ +LAF+ +HP+ LQ
Sbjct: 12 ISVAPMLDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGD---YLAFNEAEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++A+ LA YDE+N+N GCPS +V +G FG LM +PK V + ++ +
Sbjct: 69 LGGSDPADMARCAVLAQERGYDEVNINVGCPSDRVQ-NGRFGACLMAEPKTVADCINAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L DFI +V + + F +H+RKA L G+SP ENR I
Sbjct: 128 KEVDIPVTVKSRIGIDDMDEYKDLTDFI-QVIADAGCEIFTVHARKAWLKGLSPKENRDI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ YAL +FP L ++NGG+ T+D+ L K VM+GR Y NP Y L V
Sbjct: 187 PPLMYDRVYALKEEFPHLNLSINGGVKTLDDAALHLDK-LDGVMIGREVYSNP-YILADV 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y + +R ++V Y + + + ++ + +L F +PG +++
Sbjct: 245 DKRFYQDQTPVPSREEIVHAMLPYVEKQMASGA----RAWNIARHMLGLFQGQPGGRVWR 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|332289875|ref|YP_004420727.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
gi|330432771|gb|AEC17830.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
Length = 326
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 162/260 (62%), Gaps = 7/260 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+H LYTEM+ A IIY + + L + P++ P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRFFHRQFSRHTLLYTEMVTAPAIIYAKYD---HLLYHPQELPLALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA LA Y E+NLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPQQLADCAALAEQRGYSEVNLNVGCPSDRVQ-NGFFGACLMAKADLVAQCIDAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD DSY LCDF+ KV+++ + FIIH+RKA L+G+SP ENR I
Sbjct: 129 QRINIPVTVKTRIGIDDLDSYEFLCDFVEKVAAVG-CQDFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP L +NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYARVYQLKRDFPQLKIAINGGIKTIEEIQQHLQY-VDGVMVGREAYQNP-QLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEK 270
D A++ ++ +T + VEK
Sbjct: 246 DQALFDPNAAIVTPLEAVEK 265
>gi|120611162|ref|YP_970840.1| tRNA-dihydrouridine synthase A [Acidovorax citrulli AAC00-1]
gi|120589626|gb|ABM33066.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax citrulli AAC00-1]
Length = 347
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 160/264 (60%), Gaps = 5/264 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+HA LYTEM+ +++ G+++R L F+ E+HP+ LQ
Sbjct: 23 ISVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVH--GDVERHLRFNAEEHPVALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + Y EINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 81 LGGSEPGDLAHSARLGERWGYGEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMV 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+ + Y + DF+ V+ + R FI+H+R A L G+SP ENR I
Sbjct: 140 DAVSVPVTVKHRIGIGRSEEYAFVRDFVGTVAE-AGCRVFIVHARNAWLEGLSPKENREI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ + L +FPDL +NGG+ T V AL G M+GR AY NPW+ L
Sbjct: 199 PPLRYDVVHRLKAEFPDLVIAINGGLATDAAVQEALGGGLDGAMIGREAYHNPWW-LARW 257
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D +G +SGLTR E Y
Sbjct: 258 DALYFGDAASGLTREAAEEAMVDY 281
>gi|261822868|ref|YP_003260974.1| tRNA-dihydrouridine synthase A [Pectobacterium wasabiae WPP163]
gi|261606881|gb|ACX89367.1| TIM-barrel protein, yjbN family [Pectobacterium wasabiae WPP163]
Length = 340
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 157/246 (63%), Gaps = 6/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S ++HP+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEDEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPTALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LC+FI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYG 256
D ++G
Sbjct: 258 DRELFG 263
>gi|332531883|ref|ZP_08407767.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038510|gb|EGI74953.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
Length = 313
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 187/324 (57%), Gaps = 11/324 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ+G
Sbjct: 1 MAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNKHEGPVALQLG 57
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS+ LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ +
Sbjct: 58 GSDPKALAQCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKNE 116
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
N+PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +PP
Sbjct: 117 VNIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPP 175
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y Y L +D+P L +LNGG+ T+++ L+ VM+GR AY NP + L VD
Sbjct: 176 LDYPRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDE 233
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
IYG ++ +R VV Y + + G N H + + +L F +PG F+R
Sbjct: 234 KIYGDSANTQSRHDVVRSMYDYIEEEM-RLGANFWH---IARHMLGIFQGQPGARGFRRH 289
Query: 313 ADAAFQTCKTVKSFLEETIVAIPD 336
+ + S +++ + +P+
Sbjct: 290 LSESGHGKQADLSVMDKALSFVPE 313
>gi|238021360|ref|ZP_04601786.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
gi|237868340|gb|EEP69346.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
Length = 367
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 151/233 (64%), Gaps = 5/233 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+DWTD H+R LAR IS+H WLYTEM+ A II+ G+ RFLA++ +HPI LQ
Sbjct: 46 LSIAPMLDWTDRHFRYLARQISRHTWLYTEMINAGAIIH--GDPARFLAYNESEHPIALQ 103
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + Y YDEINLNCGCPSP+V G FG LM D V + ++ +
Sbjct: 104 LGGSDPAQLAQAAKKVAQYQYDEINLNCGCPSPRVQ-KGAFGACLMNDVGLVADCLNAMQ 162
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A + ++VK RIGVD Y + DF+ + +P R +I+H+R A L+G+SP ENR
Sbjct: 163 QAAPDCEITVKHRIGVDKQTEYRIVRDFVGTLREKTPVRTYIVHARNAWLDGLSPKENRD 222
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
IPPLKY Y Y L +DFPDL +NGGI T E+ LR VM+GR AY N
Sbjct: 223 IPPLKYHYVYQLKQDFPDLEIIINGGIKTNAEIAEHLRH-VDGVMIGREAYHN 274
>gi|410611553|ref|ZP_11322651.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
gi|410168971|dbj|GAC36540.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
Length = 338
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 177/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R IS+HA LYTEM+ II+ +G+ +L F+ E+HP+ LQ
Sbjct: 10 ISVAPMLDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGD---YLGFNQEEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++A+ A Y YDE+N+N GCPS +V +G FG LM +P+ V ++ +
Sbjct: 67 LGGSNPTDMARCASEAQKYGYDEVNINVGCPSDRVQ-NGRFGACLMAEPETVAACINTMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD D Y L FI +V + S FI+H+RKA L G+SP +NR +
Sbjct: 126 AEVDIPVTVKSRIGIDDMDEYEDLTRFI-EVVAASGCNTFIVHARKAWLKGLSPKQNRDV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L + FP+L +LNGG+ T+D+ L VM+GR Y NP Y L V
Sbjct: 185 PPLMYDRVYQLKQQFPELHISLNGGVKTLDDAQLHLNH-LDGVMIGREVYSNP-YILAEV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y S TR +VV Y + + RP ++ + +L F + G +++
Sbjct: 243 DKRFYQDHSVSKTRPEVVLAMLPYVEQQIAL--GARPW--NIARHMLGLFQGQAGGRIWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|421472742|ref|ZP_15920917.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
gi|400222506|gb|EJO52881.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
Length = 328
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R ++++ WLYTEM+ +++ G++ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVARHLAFTPNESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + V
Sbjct: 59 PDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMRDAVAV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAEAGCST-FIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L DFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKHDFPSLEIVINGGIKTLDEVAQHLEH-VDGVMLGREAYHNP-YVLADVDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G+ + TR + + Y A L GTY + +++ L + PG ++R
Sbjct: 235 GSTDAAPTREEAEARLIEYCAAELKRGTY------LGAIVRHALGLYRGVPGARGWRR 286
>gi|433677434|ref|ZP_20509415.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430817439|emb|CCP39810.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 339
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 176/301 (58%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A ++ G+ R L F +HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVL--GDRARLLGFDAVEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + + YDEINLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 78 LGGSDPALLAQAARIGQGWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVATMV 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCR+GVD D Y F+ +V++ + R F++H+R A L G+SP ENR +
Sbjct: 137 QAVDIPVTVKCRLGVDQDDDYEVFLAFVDQVAA-AGCRLFVVHARNAWLQGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L R+ P L LNGG+ VD A L VM+GRAAY +P Y L +
Sbjct: 196 PPLRYDWAYRLKRERPQLQVVLNGGLADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRL 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A+ GA R +++ Q Y + L + ++ + + LL FH +PG F+
Sbjct: 254 DAALTGATPR--PRAELLRALQPYVETRLA----DGVALKHIARHLLGLFHGQPGGRAFR 307
Query: 311 R 311
+
Sbjct: 308 Q 308
>gi|149926267|ref|ZP_01914529.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
gi|149825085|gb|EDM84297.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
Length = 314
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 176/296 (59%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R IS+H WLYTEM+ ++Y G+ +RFLAF+ E+HP+ Q+GGS+
Sbjct: 1 MIDWTDRHCRRFHRAISQHTWLYTEMITTGALVY--GDRNRFLAFNDEEHPVAFQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+++A+ + YDE+N+N GCPS +V G FG LM +P V + + + ++
Sbjct: 59 PEHMARCAKWIEQAGYDELNMNVGCPSERVQ-KGAFGACLMAEPGLVADCVKAMRDACSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VK RIG+D +S L DF+ KVS + FI+H+R A+L G+SP ENR IPPL+Y
Sbjct: 118 DVTVKHRIGLDYDESETMLFDFVGKVSE-AGCNTFIVHARNAVLKGLSPKENRDIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E L + FP L LNGGI T++ + + L + A M+GR AY NPW G + +
Sbjct: 177 EVVKRLKQHFPHLQIILNGGITTLEAIESHL-QWADGCMIGREAYSNPWLLAGFDE--VI 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G P++ TR V+++ + Y + L + +R + K L FH +PG L+++
Sbjct: 234 GKPTTQKTRLDVIDELRAYAEQEL----SRGESIRSITKSWLGLFHGQPGGRLYRQ 285
>gi|319639148|ref|ZP_07993902.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
gi|317399587|gb|EFV80254.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
Length = 334
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 156/233 (66%), Gaps = 4/233 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD HYR +AR I+++AWLY+EM+ + ++Y G+ DRFL+F+ + P+ LQ
Sbjct: 11 LSVAPMLDWTDRHYRFMARQITRNAWLYSEMVNSGAVVY--GDKDRFLSFNEGEQPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA A + A AY Y+E+NLNCGCPSP+V G FG LM D V + ++ +
Sbjct: 69 LGGSDPHDLAIAAKAAEAYGYNEVNLNCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + R FI+H+R A L+G+SP ENR +
Sbjct: 128 DAVEIPVTVKHRIGVDRQTEYQVVADFVGALREKTACRTFIVHARNAWLDGLSPKENREV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PPLKYEY Y L +DFPDL +NGGI T +E+ L K VM+GR AY NP
Sbjct: 188 PPLKYEYIYRLKQDFPDLEILINGGITTNEEIAEHL-KFVDGVMIGREAYHNP 239
>gi|424789365|ref|ZP_18216029.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422798588|gb|EKU26662.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 339
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A ++ G+ R L F +HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVL--GDRARLLGFDAVEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + A+ YDEINLNCGCPS +V G FG LM +P V + ++ +A
Sbjct: 78 LGGSDPALLAQAARIGQAWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVAAMA 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCR+GVD D Y F+ +V++ + F++H+R A L G+SP ENR +
Sbjct: 137 QAVDIPVTVKCRLGVDQDDDYAVFLAFVDQVAA-AGCGLFVVHARNAWLQGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L R+ P L LNGG+ VD A L VM+GRAAY +P Y L +
Sbjct: 196 PPLRYDWAYRLKRERPQLQIVLNGGLADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRL 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A+ GA R +++ + Y +A L + ++ + + LL FH +PG F+
Sbjct: 254 DAALTGATPR--PRAELLRALRPYVEARLA----DGVALKHIARHLLGLFHGQPGGRAFR 307
Query: 311 R 311
+
Sbjct: 308 Q 308
>gi|260433272|ref|ZP_05787243.1| tRNA-dihydrouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417100|gb|EEX10359.1| tRNA-dihydrouridine synthase A [Silicibacter lacuscaerulensis
ITI-1157]
Length = 345
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 170/301 (56%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S +A LYTEM+ A ++ +G L FSPE+HP+ LQ
Sbjct: 21 LSVAPMMDWTDRHCRYLHRLLSSNALLYTEMVTAPALV--RGGALHLLEFSPEEHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+A L YDEINLNCGCPS +V G FG LM DP V + ++
Sbjct: 79 LGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQS-GTFGAVLMKDPARVADCVAATR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A V V+VKCRIGVD+ L DF+ K+ + R IH+RKA L G+SP ENR I
Sbjct: 138 AAVRVEVTVKCRIGVDEQTPEEVLPDFLDKIRAAGCQR-VTIHARKAWLQGLSPKENRDI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + + FPD+ ++NGGI ++ E A L G VM+GRAAY P L
Sbjct: 197 PPLDYDLVHRMKAAFPDMHISINGGIASLAEARAHLEAGLDGVMIGRAAYHQPTDILAEA 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G ++ VV + Y D L G + + + +L F PG ++
Sbjct: 257 DPLIFGTGTAA-DPVDVVHQMLPYIDRHLAAGGR----LHQITRHMLGLFAGRPGARGWR 311
Query: 311 R 311
R
Sbjct: 312 R 312
>gi|163796265|ref|ZP_02190226.1| tRNA-dihydrouridine synthase A [alpha proteobacterium BAL199]
gi|159178407|gb|EDP62949.1| tRNA-dihydrouridine synthase A [alpha proteobacterium BAL199]
Length = 386
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 178/311 (57%), Gaps = 8/311 (2%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M A LP SVAPMMDWTD H R R +++ A LYTEM+ A+ + + G+ R + F
Sbjct: 53 MNAMIRLPHTLSVAPMMDWTDRHCRMFHRHLTRRALLYTEMVTADAVRF--GDRGRLIGF 110
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
S ++HP+ LQ+GGS +A+A +A + YDE+N+N GCPS +V G FG LM +P
Sbjct: 111 STDEHPVALQLGGSEPAAMAEAARIAEDFGYDEVNINVGCPSDRVQ-SGRFGACLMREPV 169
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
VG + + A ++PV+VKCRIGVDD D D + + + R I+H+RKA L
Sbjct: 170 LVGRMVEAMRAAVSIPVTVKCRIGVDDQDP-GPALDALTAAVAAAGCRTLIVHARKAWLQ 228
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP ENR +PPL Y+ AL PD+ LNGG+ +D V AAL +G MVGRAAY
Sbjct: 229 GLSPKENRDVPPLDYDRVDALKATNPDMVVVLNGGLLDLDAVEAALARGLDGGMVGRAAY 288
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
Q PW L D I+GAPS+ + R VVE Y G V+ V++ +L F
Sbjct: 289 QTPW-VLADADRRIFGAPSTDIDRHAVVEAMAEYAGRARRDLGTP---VKSVVRHMLGLF 344
Query: 301 HSEPGNGLFKR 311
PG ++R
Sbjct: 345 QGLPGARAWRR 355
>gi|83749666|ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW551]
gi|83723668|gb|EAP70865.1| NIFR3-like protein [Ralstonia solanacearum UW551]
Length = 344
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 171/279 (61%), Gaps = 17/279 (6%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 10 PRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDETEHPV 67
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ L + Y EINLNCGCPS +V G FG LM +PK V + +
Sbjct: 68 ALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQ-RGAFGACLMAEPKLVADCVR 126
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 127 AMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKEN 185
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL+YE Y L RDFP L LNGG+ T+++++ L AH VM+GR AY +P +
Sbjct: 186 REIPPLRYEVAYQLKRDFPRLEILLNGGVQTLEQIDTHL---AHVDGVMIGREAYHHP-H 241
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
+ + D YGA + TR +V DA++G G
Sbjct: 242 LMANFDARYYGADTVAPTRAEVE-------DAMIGYIGR 273
>gi|16329480|ref|NP_440208.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|383321221|ref|YP_005382074.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324391|ref|YP_005385244.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490275|ref|YP_005407951.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435541|ref|YP_005650265.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|451813639|ref|YP_007450091.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
gi|2829606|sp|P72872.1|DUS2_SYNY3 RecName: Full=Probable tRNA-dihydrouridine synthase 2
gi|1651962|dbj|BAA16888.1| sll0926 [Synechocystis sp. PCC 6803]
gi|339272573|dbj|BAK49060.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|359270540|dbj|BAL28059.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273711|dbj|BAL31229.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276881|dbj|BAL34398.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957359|dbj|BAM50599.1| tRNA-dihydrouridine synthase A [Bacillus subtilis BEST7613]
gi|451779608|gb|AGF50577.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
Length = 334
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R R +++H LYTEM+ A+ I++ G+ R L FSPE+ P+ LQ
Sbjct: 13 LSVAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILH--GDRQRLLNFSPEEKPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ + + YDEINLN GCPS +V G FG LM P V + +S +
Sbjct: 71 LGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQ 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY L F+ V++ R F +H+RKA L G+SP ENRTI
Sbjct: 130 KAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQR-FTVHARKAWLQGLSPKENRTI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP L +NGGI +++ L VMVGRAAY+NP Y V
Sbjct: 189 PPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHL-SHVDAVMVGRAAYENP-YLFATV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IY + +R +++E+ Y + L +G+ + + + LL F+ +P ++
Sbjct: 247 DRDIYHKTNLVPSRAEIIERMLPYVEERL-RHGDR---LNQITRHLLSLFNGQPRAKFWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>gi|421498959|ref|ZP_15946026.1| dusA [Aeromonas media WS]
gi|407181999|gb|EKE55989.1| dusA [Aeromonas media WS]
Length = 331
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPLALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ LA YDEINLN GCPS +V +G FG LM +P V + + +
Sbjct: 66 LGGSNPADLARCARLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 125 DVVNIPVTVKTRIGIDEQDSYEFLQAFIEQVRD-AGCETFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+N++++ L++ VM+GR AYQNP Y L V
Sbjct: 184 PPLDYPRVYQVKQDYPELTIALNGGVNSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAEV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G +R +VV Y + L GN H + + +L F + G ++
Sbjct: 242 DNRVFGLGGEVPSRHEVVRMMLPYMEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|385873315|gb|AFI91835.1| TIM-barrel protein, yjbN family [Pectobacterium sp. SCC3193]
Length = 340
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 157/246 (63%), Gaps = 6/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S ++HP+ LQ
Sbjct: 24 FSVAPMLDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGD---YLAYSEDEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPTALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LC+FI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYG 256
D ++G
Sbjct: 258 DRELFG 263
>gi|312114498|ref|YP_004012094.1| yjbN family TIM-barrel protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219627|gb|ADP70995.1| TIM-barrel protein, yjbN family [Rhodomicrobium vannielii ATCC
17100]
Length = 343
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 176/303 (58%), Gaps = 12/303 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPMMDWTD H R R +S+ A LYTEM+ + I++ G+ +R L F +HP+ LQ
Sbjct: 17 FCVAPMMDWTDRHCRFFHRQLSRRARLYTEMVTSGAIMF--GDRERLLGFDASEHPVALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI- 129
+GGS+ LA+A E+ + YDEINLNCGCPS +V G FG LM +P+ V ++ I
Sbjct: 75 LGGSDPVELARAAEIGAGFGYDEINLNCGCPSDRVQ-SGRFGACLMAEPELVASCVAAIK 133
Query: 130 -AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
A +PV+VK RIG+D+ DS L FI V++ S FI+H+RKA L G+SP ENR
Sbjct: 134 SAVGGQIPVTVKNRIGIDEQDSEADLTRFIETVAA-SGCEIFIVHARKAWLKGLSPRENR 192
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+PPL YE Y L FP+LT +NGGI T+ + L VM+GRAAY+NP L
Sbjct: 193 DVPPLDYERVYRLKAAFPELTIIINGGIETIAQSAKHLEM-VDGVMLGRAAYKNPALLL- 250
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD A+YG ++ L + +E+ Y + L + + + +L + PG
Sbjct: 251 EVDAALYGETAAPLRPHEALERMLPYIEREL----ERGTRLSAIARHMLGLVNGRPGARP 306
Query: 309 FKR 311
F+R
Sbjct: 307 FRR 309
>gi|149376568|ref|ZP_01894328.1| tRNA-dihydrouridine synthase A [Marinobacter algicola DG893]
gi|149359086|gb|EDM47550.1| tRNA-dihydrouridine synthase A [Marinobacter algicola DG893]
Length = 320
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 180/323 (55%), Gaps = 14/323 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWT +HYR LAR +S+H LYTEM+ +I+ G+ RFL P ++P+ LQ+GGSN
Sbjct: 1 MMDWTTSHYRYLARQLSRHTLLYTEMVTTGALIH--GDTARFLRHDPTEYPLALQLGGSN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA LA Y +DE+NLN GCPS +V + G LM P V E + + A T++
Sbjct: 59 PQELAHCANLAEQYGFDEVNLNVGCPSDRVQNN-MIGACLMAHPDKVAEGVQAMIAATSL 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D +S++ LC+FI KVS + R FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGIDGRESWDDLCEFIEKVSE-AGCRTFIVHARIAVLEGLSPKENRDIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
++ Y L +P L +NGGI T E L VM+GR AY NPW G VDT +
Sbjct: 177 DWVYRLKARYPHLEIIINGGIKTFAECREHLEH-TDGVMLGREAYHNPWLLAG-VDTEFF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
G P +R + + + L G Y + + + L+ FH +PG F+R
Sbjct: 235 GRPMPISSRHDALRAVLPFIQSELDRGVY------LSHISRHLMGLFHGQPGGRQFRRYI 288
Query: 314 DAAFQTCKTVKSFLEETIVAIPD 336
+ +E+ + +P+
Sbjct: 289 SENAHKPGSGIEVIEQAMAKVPE 311
>gi|68249213|ref|YP_248325.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
gi|68057412|gb|AAX87665.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
Length = 327
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 186/325 (57%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ ++ +T + V+ Y + L N H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAAIVTAHEAVQSMLPYIEQQL----NQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVIETALSFVE 326
>gi|294634339|ref|ZP_06712877.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451967317|ref|ZP_21920561.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
gi|291092236|gb|EFE24797.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451313872|dbj|GAC65923.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
Length = 345
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S ++HP+ LQ
Sbjct: 27 FSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEQEHPLALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 84 LGGSNPADLARCAALAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI V+ FI+H+RKA L+G+SP ENR +
Sbjct: 143 DVVSIPVTVKTRIGIDEQDSYAFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKENREV 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT +NGG+ ++ E A L VMVGR AY NP L V
Sbjct: 203 PPLDYPRVYRLKQDFPQLTIAINGGVKSLAEAQAHLCH-VDGVMVGREAYHNPG-MLAQV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A ++ VV Y + L GTY + + + +L F PG
Sbjct: 261 DRQLFDATAAVPDSIAVVRALYPYIERELAQGTY------LGHITRHILGLFQGIPGARQ 314
Query: 309 FKR 311
++R
Sbjct: 315 WRR 317
>gi|424066941|ref|ZP_17804402.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408001869|gb|EKG42148.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 339
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP+ LQ
Sbjct: 23 FSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA LA YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 81 LGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+SP ENR I
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLSPKENRDI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y L HV
Sbjct: 199 PPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAHV 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + ++R +E + Y A + + GN R ++ L F PG F+
Sbjct: 257 DQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGARRFR 312
Query: 311 R 311
+
Sbjct: 313 Q 313
>gi|359439600|ref|ZP_09229545.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|359445015|ref|ZP_09234774.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
gi|358025710|dbj|GAA65794.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|358041144|dbj|GAA71023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
Length = 324
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 189/333 (56%), Gaps = 11/333 (3%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
++ L FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+
Sbjct: 3 KRTLNRRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNQH 59
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM +P V
Sbjct: 60 EGPVALQLGGSDPQALAQCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPNLVA 118
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
E ++ + + N+PV+VK RIG+D+ DSY LC I + S FIIH+RKA L G+S
Sbjct: 119 ECVAAMKSEVNIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLKGLS 177
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +P L Y Y L +D+P L ++NGG+ T+++ L+ VMVGR AY NP
Sbjct: 178 PKENREVPELNYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQY-IDGVMVGREAYSNP 236
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ L VD IYG ++ +R VV Y + + G N H V + +L F +
Sbjct: 237 -FMLNEVDEKIYGDAANTQSRHDVVRSMYDYIEEEM-RLGANFWH---VARHMLGIFQGQ 291
Query: 304 PGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 336
PG F+R + S +++ + +P+
Sbjct: 292 PGARGFRRHLSENGHGKQADLSVMDKALSYVPE 324
>gi|325576762|ref|ZP_08147377.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
gi|325160968|gb|EGC73086.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
Length = 328
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 190/327 (58%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SK+A LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGSDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD DSY LCDFI KV + + FI+H+RKA L+G+SP ENR I
Sbjct: 129 RVVNIPVTVKTRIGIDDLDSYQFLCDFIKKVHH-AGCQEFIVHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L +DFP LT +NGGI T++E+ L + VMVGR AYQNP LG+V
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKHHL-QFVDGVMVGREAYQNP-SLLGYV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A + +T +Q VE Y + L G Y N+ +++ +L F + G
Sbjct: 246 DQMLFDANADIVTPKQAVEAMFPYIEKQLSQGVYLNH------IVRHMLGAFQNCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T SF+E
Sbjct: 300 WRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|170732894|ref|YP_001764841.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia MC0-3]
gi|169816136|gb|ACA90719.1| TIM-barrel protein, yjbN family [Burkholderia cenocepacia MC0-3]
Length = 328
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 159/251 (63%), Gaps = 6/251 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R+ R ++++ WLYTEM+ +++ G+ R LAF+P + P+ LQ+GGS
Sbjct: 1 MLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDAQRHLAFTPSESPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 RDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVRAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD + Y + DF+ V+ + F++H+R A+L G+SP ENR IPPLKY
Sbjct: 118 PVTVKHRIGVDAVEDYAFVRDFVGTVAE-AGCETFVVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L DFP L +NGGI T+DEV L VM+GR AY NP Y L VD Y
Sbjct: 177 DYAYRLKHDFPSLEIVINGGITTLDEVAQHLEH-VDGVMLGREAYHNP-YVLAEVDARFY 234
Query: 256 GAPSSGLTRRQ 266
G+ ++ TR +
Sbjct: 235 GSTAAVPTREE 245
>gi|261401825|ref|ZP_05987950.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
gi|269208032|gb|EEZ74487.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
Length = 336
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 183/314 (58%), Gaps = 8/314 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQEAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V++ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKRKADAAF 317
G ++R A
Sbjct: 299 KGARTWRRMLSDAM 312
>gi|392555864|ref|ZP_10303001.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas undina NCIMB
2128]
Length = 324
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 189/333 (56%), Gaps = 11/333 (3%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
++ L FSVAPM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+
Sbjct: 3 KRTLNRRFSVAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNQH 59
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM +P V
Sbjct: 60 EGPVALQLGGSDPQALAQCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPNLVA 118
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
E ++ + + N+PV+VK RIG+D+ DSY LC I + S FIIH+RKA L G+S
Sbjct: 119 ECVAAMKSEVNIPVTVKTRIGIDEEDSYEFLCALI-EASHKVGCDDFIIHARKAWLKGLS 177
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +P L Y Y L +D+P L ++NGG+ T+++ L+ VMVGR AY NP
Sbjct: 178 PKENREVPELNYPRVYQLKKDYPQLDLSINGGVKTIEQSLEHLQY-IDGVMVGREAYSNP 236
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ L VD IYG ++ +R VV Y + + G N H V + +L F +
Sbjct: 237 -FMLNEVDEKIYGDAANTQSRHDVVRSMYDYIEEEM-RLGANFWH---VARHMLGIFQGQ 291
Query: 304 PGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 336
PG F+R + S +++ + +P+
Sbjct: 292 PGARGFRRHLSENGHGKQADLSVMDKALSYVPE 324
>gi|37528192|ref|NP_931537.1| tRNA-dihydrouridine synthase A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787629|emb|CAE16736.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 345
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 177/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S ++HPI LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEQEHPIALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA ++A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPQALAHCAKIAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAELVADCVKAMQ 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
NVPV+VK RIG+D+ DSY LCDFI V S F +H+RKA L+G+SP ENR I
Sbjct: 144 DVVNVPVTVKTRIGIDEQDSYQFLCDFIDIVVQHSGCNIFTMHARKAWLSGLSPKENREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP LT +NGGI +++E L+ +M+GR AYQNP L V
Sbjct: 204 PPLDYPRVYQLKKDFPQLTIAINGGIKSLEEAKQHLQH-VDGIMIGREAYQNP-SILAQV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A + VV+ Y + L GTY + + + +L F PG
Sbjct: 262 DHELFDASMPVVNTVAVVKALYPYIEQELSKGTY------LGHITRHILGIFQGIPGARQ 315
Query: 309 FKR 311
++R
Sbjct: 316 WRR 318
>gi|392954830|ref|ZP_10320381.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
gi|391857487|gb|EIT68018.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
Length = 345
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R+ RL++ HA LYTEM+ +++ G+++R L F +HP+ LQ
Sbjct: 23 LSVAPMMDWTDTHCRSFHRLLAPHALLYTEMVTTGALLH--GDVERHLRFDASEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS D LA+ LA + YDE+NLNCGCPS +V G FG LM + V + + +
Sbjct: 81 LGGSEPDALARCAALAEQWQYDEVNLNCGCPSDRVQ-EGRFGACLMREADRVADCVRAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ T++PV+VK R+G+DD + Y + F+ V++ T FI+H+RKA L G+SP ENR I
Sbjct: 140 SATDLPVTVKHRVGIDDSEDYAFMRGFVETVAAAGCTT-FIVHARKAWLQGLSPRENREI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE+ Y L ++FP LT +NGGI T+D+ LR VM+GR AY+NP Y L +
Sbjct: 199 PPLTYEHVYRLKQEFPQLTVLINGGIRTLDQCRQHLRY-VDGVMLGREAYENP-YALAGL 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ TR +++ Y Y L GT N + + +L + + G
Sbjct: 257 DRELFETDGDIPTREEIMNAYLPYVQRELDRGTALNR------ITRHILGLYRGQNGGRA 310
Query: 309 FKR 311
F+R
Sbjct: 311 FRR 313
>gi|219871369|ref|YP_002475744.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
gi|219691573|gb|ACL32796.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
Length = 323
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 188/326 (57%), Gaps = 23/326 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R ++H+ LY+EM+ A I++ + +L LA+ P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFTQHSLLYSEMITAPAILHAKYDL---LAYDPTENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LAK +L Y EINLN GCPS +V +G FG LM V + +
Sbjct: 67 LGGSDPEQLAKCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMGKADLVARCVEAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI K+ FI+H+RKA L+G+SP ENR I
Sbjct: 126 KEVSIPVTVKHRIGIDDLDSYEFLCDFIEKIQPY--CNDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG++
Sbjct: 184 PPLDYERVYQLKRDFPHLKMSINGGIKTIEEIKHHL-QFVDGVMVGREAYQNP-SLLGYI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ + +T +Q VEK Y + L G Y N+ +++ +L F + G
Sbjct: 242 DRELFDPNAEIVTPKQAVEKMLPYIEQQLSQGVYLNH------IVRHILGAFQNCKGARQ 295
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R K A + + SFL
Sbjct: 296 WRRHLSENACKQGAGVEVVEQALSFL 321
>gi|359787117|ref|ZP_09290183.1| tRNA-dihydrouridine synthase A [Halomonas sp. GFAJ-1]
gi|359295499|gb|EHK59764.1| tRNA-dihydrouridine synthase A [Halomonas sp. GFAJ-1]
Length = 343
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 170/301 (56%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWT YR AR ++K A LYTEM+ I++ +RFL FS +HPI LQ
Sbjct: 13 FSVAPMMDWTTRDYRAFARTLTKRALLYTEMVTTGAILHGSPR-ERFLGFSEVEHPIALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +A A+ YDE+NLN GCPS +V + G LM P+ V EA+ +
Sbjct: 72 LGGSDAGELAECAAIAEAWGYDEVNLNVGCPSDRVQ-NNMIGACLMGHPEKVAEAIRAMQ 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VKCRIG+DD D L FI V+ + F +H+RKA L G+SP +NR +
Sbjct: 131 AAVSIPVTVKCRIGIDDQDEDADLARFINIVAD-AGCEVFTVHARKAWLQGLSPKQNRDV 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L +NGGI T+DE A L VMVGR AYQNPW G V
Sbjct: 190 PPLNYPRVHRLKQHHPELHIGINGGIKTLDECQAQLMH-VDSVMVGREAYQNPWLLAG-V 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G P TR + ++ Y L + + + + LL F G F+
Sbjct: 248 DAQLFGEPGPAKTRLEAAMAFRPYIQQRL----DEGAKLNHITRHLLGLFQGCSGGRRFR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|85060114|ref|YP_455816.1| tRNA-dihydrouridine synthase A [Sodalis glossinidius str.
'morsitans']
gi|84780634|dbj|BAE75411.1| conserced hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 343
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 179/304 (58%), Gaps = 10/304 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P FSVAPM+DWTD+H R R +S+ A LYTEM+ +++ +G+ +LA+ +HP+
Sbjct: 25 PGRFSVAPMLDWTDSHCRFFLRQLSRRALLYTEMVTTGALLFGKGD---YLAYHDAEHPL 81
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D LA+ +LA YDEINLN GCPS +V +G FG LM + V ++
Sbjct: 82 ALQLGGSEPDALARCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEKDRVAACIA 140
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +P++VK RIG+D+ DSY LC+FI V++ FIIH+RKA LNG+SP EN
Sbjct: 141 AMREAVTLPITVKTRIGIDEQDSYAFLCEFIDTVATHGGCETFIIHARKAWLNGLSPKEN 200
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL Y+ Y L RDFP L LNGGI T+ + L+K VM+GR AYQNP L
Sbjct: 201 REIPPLDYDRVYQLKRDFPALRLMLNGGIKTLHDAREHLQK-LDGVMMGREAYQNPG-IL 258
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD+ ++G + + V++ Y + L + G H + + +L F PG
Sbjct: 259 ARVDSELFGDADTLPNQAAVIDVMLPYIEREL-SQGAALGH---ITRHMLGLFQGMPGAR 314
Query: 308 LFKR 311
++R
Sbjct: 315 QWRR 318
>gi|383457478|ref|YP_005371467.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
gi|380732639|gb|AFE08641.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
Length = 337
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 178/311 (57%), Gaps = 11/311 (3%)
Query: 1 MVARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF 60
M A Y P VAPMMDWTD H R RLIS+H LYTEM+ +++ G DR L F
Sbjct: 5 MTALAYPMP-LCVAPMMDWTDRHCRYFFRLISRHTLLYTEMVTTGAVLH--GKRDRLLDF 61
Query: 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPK 120
+P +HP+ LQ+GGS +LA + + + YDEINLN GCPS +V G FG LM +P
Sbjct: 62 TPAEHPVALQLGGSEPADLAASARIGEEWGYDEINLNVGCPSDRVQS-GRFGACLMAEPD 120
Query: 121 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN 180
V ++ + +PV+VK RI +DD + + L DF+ +VS+ TR FI+H+RKA L
Sbjct: 121 LVARGVAAMREAVRIPVTVKSRIAIDDMEEWPTLEDFVRRVSAAGCTR-FIVHARKAWLQ 179
Query: 181 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
G+SP ENR +PPL+Y+ + L ++P L +LNGGI T+D L + VM+GRA Y
Sbjct: 180 GLSPKENRDVPPLRYDLVHRLKAEYPHLDISLNGGIKTLDAAAEHLGR-VDGVMMGRAPY 238
Query: 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
++P Y L D +G + LTR +VV+ Y + T + + + + +L F
Sbjct: 239 ESP-YLLADADRRFFGGTQAPLTRHEVVDAMLPY----IETQMSQGAPLGAITRHMLGLF 293
Query: 301 HSEPGNGLFKR 311
PG ++R
Sbjct: 294 QGLPGARAWRR 304
>gi|237797725|ref|ZP_04586186.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806004|ref|ZP_04592708.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331020575|gb|EGI00632.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331027114|gb|EGI07169.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 339
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 180/309 (58%), Gaps = 10/309 (3%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+R L FSVAPMMDWTD+H R RL+S+HA LYTEM+ +++ G+ DRFL
Sbjct: 15 SRAVLSRRFSVAPMMDWTDHHCRYFMRLLSRHALLYTEMVTTGALLH--GDRDRFLRHDE 72
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
+HP+ LQ+GGS +LA LA YDE+NLN GCPS +V + G LM P+ V
Sbjct: 73 TEHPLALQLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLV 131
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+
Sbjct: 132 ADCVKAMRDAVVIPVTVKHRIGINGRDSYAELCDFVGTVQE-AGCQSFTVHARIAILEGL 190
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY N
Sbjct: 191 SPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQV-FDGVMLGREAYHN 249
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P Y L VD ++G+ + ++R +E + Y A + + GN R ++ L F
Sbjct: 250 P-YLLAQVDKQLFGSMAPVISRHAALEAMRPYIAAHIASGGNMHHVTRHMLGLGLGF--- 305
Query: 303 EPGNGLFKR 311
PG F++
Sbjct: 306 -PGARRFRQ 313
>gi|149913943|ref|ZP_01902475.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149812227|gb|EDM72058.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
Length = 337
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 168/301 (55%), Gaps = 8/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S APMMDWTD H R L RL+S+ A LY+EM+ A ++ +G L +SP++HP+ LQ
Sbjct: 12 LSCAPMMDWTDRHCRYLHRLLSRRALLYSEMVTAAALV--RGGALHLLDYSPQEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + YDEINLN GCPS +V G FG LM DP V E + +
Sbjct: 70 LGGSDPQELAQAARMGAEAGYDEINLNVGCPSDRVQ-SGTFGAVLMKDPGLVSECCAAMI 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ V V+VKCRIGVDD D L +F+ +VS+ R F IH+RKA L G+SP +NR I
Sbjct: 129 EASAVEVTVKCRIGVDDQDPETVLPEFLARVSAAGVQR-FTIHARKAWLQGLSPKQNRDI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + FP L ++NGGI T+D+V L G VMVGRAAY P L
Sbjct: 188 PPLDYDLVLRMKALFPGLHLSINGGITTLDQVRDFLEAGLDGVMVGRAAYHQPADILCAA 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G T V K Y +A L G + + + +L F PG ++
Sbjct: 248 DRLIFGEEGPDTTPDDAVLKMLPYIEAHLAQGGR----LHQITRHMLGLFAGRPGARAWR 303
Query: 311 R 311
R
Sbjct: 304 R 304
>gi|333914801|ref|YP_004488533.1| yjbN family TIM-barrel protein [Delftia sp. Cs1-4]
gi|333745001|gb|AEF90178.1| TIM-barrel protein, yjbN family [Delftia sp. Cs1-4]
Length = 325
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 165/275 (60%), Gaps = 6/275 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S+H LYTEM+ +++ G++ R L F E+HP+ LQ
Sbjct: 4 MSVAPMMDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLH--GDVPRHLRFEAEEHPVALQ 61
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA+A L + YDEINLNCGCPS +V G FG LM + V + + +
Sbjct: 62 LGGSEPSDLAQAARLGAQWGYDEINLNCGCPSERVQ-RGAFGACLMNEAPLVADCVKAMV 120
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D +SY + DF+ V+ + R FI+H+R A L G+SP ENR I
Sbjct: 121 DVVDMPVTVKHRIGIDKDESYEFVRDFVGTVAD-AGCRVFIVHARNAWLKGLSPKENREI 179
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L +DFP+LT +NGGI V L++ VMVGR AY NPW+ L
Sbjct: 180 PPLRYEIVARLKQDFPELTIAINGGIKADATVQELLQQ-VDGVMVGREAYHNPWW-LASW 237
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 285
D YG S TR + E+ Y + T+G +
Sbjct: 238 DALYYGDASVEHTRESIEEQMVAYMEREARTHGTH 272
>gi|365091176|ref|ZP_09328683.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
gi|363416294|gb|EHL23414.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
Length = 328
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 15/304 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+++ LYTEM+ A II+ G +R L F+ E+HP+ LQ
Sbjct: 1 MSVAPMMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIH--GGTERHLRFNAEEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG+ D LA+A L + Y EINLNCGCPS +V G FG SLM P+ V + + +
Sbjct: 59 LGGNEPDKLAEAARLGAQWGYGEINLNCGCPSDRVQ-RGAFGASLMKSPQLVADCVKAMK 117
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D + Y + DFI V+ + FI+H+R A L G+SP ENR +
Sbjct: 118 DVVDVPVTVKHRIGIDKVEDYGFVRDFIGTVADAGCSV-FIVHARNAWLQGLSPKENRDV 176
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH---VMVGRAAYQNPWYTL 247
PPL+YE + L +FP T +NGGI T +A +++ H VM+GR AY NPW+ L
Sbjct: 177 PPLRYEVVHRLKAEFPQFTIAINGGITT----DAVVQEQLTHLDGVMIGREAYHNPWW-L 231
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D YG LTR +V Y + YG PH + + +L HS PG
Sbjct: 232 ARWDQLYYGGAPCPLTREEVELAMVEYMEREAAQYGTPWPH---IARHMLGLRHSLPGAR 288
Query: 308 LFKR 311
++++
Sbjct: 289 IWRQ 292
>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille]
gi|151280873|gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
Length = 344
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 181/311 (58%), Gaps = 10/311 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
+Y SVAPMMDWTD H R R I++H WLYTEM+ +++ G++ R L F+ E+
Sbjct: 12 KYQGRRISVAPMMDWTDRHCRMFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFNEEE 69
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS +LAK+ +L + YDE+NLNCGCPS +V G FG LM + V +
Sbjct: 70 HPVALQLGGSEPADLAKSAKLGEQWGYDEVNLNCGCPSERVQ-KGAFGACLMNETGLVAD 128
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + ++ V+VK RIG+DD SY+ + DF+ ++ + FI+H+R A+L G+SP
Sbjct: 129 CVKAMRDAVSIDVTVKHRIGIDDITSYDFVRDFVGTIAD-AGCNTFIVHARNAILKGLSP 187
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL+YE+ Y L +DFP L +NGG TV E++ L+ VM+GR AY NP
Sbjct: 188 KENREIPPLRYEFAYQLKKDFPALEIIINGGTKTVAEIDTHLQH-VDGVMLGREAYHNP- 245
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRP----HVRDVMKPLLHFF 300
+ + D YG ++ TR +VV+ Y A L +G + V + + +L
Sbjct: 246 FLMSTFDARYYGDDATSKTRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGLM 305
Query: 301 HSEPGNGLFKR 311
P + F++
Sbjct: 306 AGLPNSRAFRQ 316
>gi|126658190|ref|ZP_01729341.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
gi|126620561|gb|EAZ91279.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
Length = 341
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 175/302 (57%), Gaps = 12/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD H+R R I++H LYTEM+ I + G+ + L FSPE+ P+ LQ
Sbjct: 12 LSVAPMMDYTDRHFRYFMRQITRHTLLYTEMIVTAAI--KHGDRSKLLDFSPEEKPLSLQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG LA+ +A + YDE+NLN GCPS +V G FG LM +P V + + +
Sbjct: 70 LGGDKPHELAECAIIAEDWGYDEVNLNVGCPSDRVQS-GHFGACLMANPDLVAQCVEKMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY + F+ KV S + + F +H+RKA L G+SP ENR I
Sbjct: 129 KAVTIPVTVKHRIGIDDQDSYENMAQFV-KVVSDAGCQRFTVHARKAWLKGLSPKENRNI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L ++FP L +NGGI +++V L + VM+GRAAY NP Y V
Sbjct: 188 PPLRYEAVYRLKQEFPHLFIEINGGITNLEQVRNHL-ELVDAVMIGRAAYDNP-YLFATV 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLF 309
D IY LTR +++EK Y D + +R H + + + LL F PG +
Sbjct: 246 DRDIYQDKIIQLTRHEIIEKMLPYIDDWV-----SRGHKLHKISRHLLAIFSGIPGTKAW 300
Query: 310 KR 311
KR
Sbjct: 301 KR 302
>gi|374336814|ref|YP_005093501.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
gi|372986501|gb|AEY02751.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
Length = 316
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 180/324 (55%), Gaps = 15/324 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+HA LYTEM+ II+ +G+ +LA++ E+HP+VLQ+GG++
Sbjct: 1 MLDWTDRHCRYFHRLMSRHAQLYTEMVTTGAIIHGKGD---YLAYNDEEHPLVLQLGGND 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA LA YDEINLN GCPS +V +G FG LM P V E ++ + A ++
Sbjct: 58 PQALAHCARLAEQRGYDEINLNVGCPSDRVQ-NGLFGACLMAHPHTVAEGVAAMKAAVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D+ DSY LC + KV+ + I+H+RKA L G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDEQDSYEFLCTLVDKVAE-AGVDALIVHARKAWLQGLSPKENRDIPPLDY 175
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ Y L RD+P LT +NGGI T++E L VM+GR YQNP Y L VD ++
Sbjct: 176 DRVYQLKRDYPGLTIAVNGGIKTLEEARVHL-ANLDGVMLGREVYQNP-YLLARVDAELF 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA 313
+R QV+ + Y + L GTY N + + L F PG ++R
Sbjct: 234 NDEHEAPSRHQVIRQLLPYIERELTQGTYLGN------ITRHTLGIFQGMPGARAWRRHL 287
Query: 314 DAAFQTCKTVKSFLEETIVAIPDS 337
+E + +P+
Sbjct: 288 SENAHKRGAGPEVVEAAMARVPEE 311
>gi|345879168|ref|ZP_08830841.1| fatty acid hydroxylase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344223800|gb|EGV50230.1| fatty acid hydroxylase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 329
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD+TD +R ARLIS+H LYTEM+ +++ G+ +RFL F +HP+ +Q
Sbjct: 12 LSIAPMMDYTDRLFRYFARLISRHTLLYTEMITTGALLH--GDAERFLEFDVSEHPVAIQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+A LA YDE+NLN GCPS +V +G G LM P+ V + + +
Sbjct: 70 LGGSNPAELAEAARLAETAGYDEVNLNVGCPSDRVQ-NGMIGACLMAHPELVADCVRAMK 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD+DSY L F+ + HFIIH+RKA L G+SP ENR +
Sbjct: 129 EAVSIPVTVKTRIGIDDNDSYAALQGFVAAQIG-AGCDHFIIHARKAWLQGLSPKENREV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L +DFP++ FT+NGGI T+ + L +G VM+GR AY NPW L
Sbjct: 188 PPLRYEIVQQLKQDFPEMGFTINGGIQTLT-LAEQLLQGLDGVMIGREAYHNPW-ILAEA 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG L+R QV+E++ + + L + + + +L FH PG ++
Sbjct: 246 DRRIYGDNQPQLSRHQVLERFMPFVEQQL----QRGIPLNRITRHILGLFHGCPGARAWR 301
Query: 311 R 311
R
Sbjct: 302 R 302
>gi|421082495|ref|ZP_15543378.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401702732|gb|EJS92972.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 340
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 6/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ I++ +G+ +LA+S E+HP+ LQ
Sbjct: 24 FSIAPMLDWTDRHCRYFLRQLTGQTLLYTEMVTTGAILHGKGD---YLAYSEEEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 81 LGGSDPTALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMK 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+T++P++VK RIG+DD DSY LC+FI V+ F+IH+RKA L+G+SP ENR I
Sbjct: 140 DSTSIPITVKTRIGIDDQDSYEFLCEFIQTVAGRGECDTFVIHARKAWLSGLSPKENREI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 200 PPLDYPRVYQLKRDFPALTLAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 257
Query: 251 DTAIYG 256
D ++G
Sbjct: 258 DRELFG 263
>gi|17546018|ref|NP_519420.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum GMI1000]
gi|17428313|emb|CAD15001.1| putative trna-dihydrouridine synthase protein [Ralstonia
solanacearum GMI1000]
Length = 344
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 164/262 (62%), Gaps = 10/262 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 10 PRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDEAEHPV 67
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ L + Y EINLNCGCPS +V G FG LM +PK V + +
Sbjct: 68 ALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQ-RGAFGACLMAEPKLVADGVK 126
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 127 AMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGAIAE-AGCETFIVHARNAILKGLSPKEN 185
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL+YE Y L RDFP L LNGG+ T+++++ L AH VM+GR AY +P +
Sbjct: 186 REIPPLRYEVVYQLKRDFPRLEILLNGGVQTLEQIDTHL---AHVDGVMIGREAYHHP-H 241
Query: 246 TLGHVDTAIYGAPSSGLTRRQV 267
+ D YGA + TR +V
Sbjct: 242 LMAGFDARYYGADAVAPTRAEV 263
>gi|385342626|ref|YP_005896497.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|385857936|ref|YP_005904448.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|421549904|ref|ZP_15995912.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|433470627|ref|ZP_20428026.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|433476923|ref|ZP_20434250.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|433521136|ref|ZP_20477836.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|433525327|ref|ZP_20481971.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|433538106|ref|ZP_20494592.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
gi|254671973|emb|CBA04409.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha275]
gi|325202832|gb|ADY98286.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|325208825|gb|ADZ04277.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|402331322|gb|EJU66661.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|432211675|gb|ELK67623.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|432217110|gb|ELK72980.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|432262174|gb|ELL17418.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|432263113|gb|ELL18338.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|432275782|gb|ELL30849.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
Length = 336
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 169/274 (61%), Gaps = 6/274 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T +E+ L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEEIAQHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQA 274
>gi|310816167|ref|YP_003964131.1| tRNA-dihydrouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|385233670|ref|YP_005795012.1| tRNA-dihydrouridine synthase (NifR3-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
gi|308754902|gb|ADO42831.1| tRNA-dihydrouridine synthase A [Ketogulonicigenium vulgare Y25]
gi|343462581|gb|AEM41016.1| tRNA-dihydrouridine synthase (NifR3-like protein) protein
[Ketogulonicigenium vulgare WSH-001]
Length = 329
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 174/301 (57%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD++ R R S++A LYTEM+ A +I+ G R L + +HP+ LQ
Sbjct: 10 LSVAPMIDWTDSNCRIFHRQFSRNALLYTEMVTAPAVIH--GPRARLLGYRDAEHPVALQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG++ L +A +A +NYDEINLNCGCPS +V G FG LM P V E +S +
Sbjct: 68 LGGADPAQLREAVRIAADWNYDEINLNCGCPSDRVQS-GAFGAVLMRQPDLVAEILSEMI 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + V V++KCRIGVDD + + L F+ KV++ S R IIH+RKA L G+SP ENR I
Sbjct: 127 AASPVEVTLKCRIGVDDQEPSDILPAFLEKVAA-SGVRRVIIHARKAWLQGLSPKENRDI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ +A+ FPDL +LNGG+ ++ E A L +G VM+GRAAY P LG
Sbjct: 186 PPLDYDLVFAMKAAFPDLHISLNGGVKSLAEAQALLDRGLDGVMIGRAAYHEPADILGQA 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + V + + D + R H + + +L F PG ++
Sbjct: 246 DPLIWGEGHAISAEEAVHAMFPVIEDHL---RAGGRLH--QITRHMLGAFAGRPGARQWR 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|332142739|ref|YP_004428477.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|332142839|ref|YP_004428577.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552761|gb|AEA99479.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552861|gb|AEA99579.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii str. 'Deep
ecotype']
Length = 348
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 165/265 (62%), Gaps = 8/265 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SKH LYTEM+ IIY +G+ +L ++ E+HPI +Q
Sbjct: 20 FSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGD---YLGYNKEEHPIAVQ 76
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++AK EL+ YDE+N+N GCPS +V +G FG LM P+ V + +
Sbjct: 77 LGGSDPSDMAKCAELSQERGYDEVNINVGCPSDRVK-NGSFGACLMAQPEVVANCVKAMQ 135
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VKCRIG+DD D FI V+ + FI+H+RKA L G+SP ENR I
Sbjct: 136 SAVDIPVTVKCRIGIDDMDEDEDFARFIDTVAD-AGCDTFIVHARKAWLQGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L+ ++NGGI T+ E L + VMVGR Y NP Y + V
Sbjct: 195 PPLNYPRVHRLKQARPELSISINGGIKTLAETQQQL-ESVDGVMVGREVYANP-YIMSSV 252
Query: 251 DTAIYG-APSSGLTRRQVVEKYQIY 274
D I+G A + L+RR++V + Q Y
Sbjct: 253 DKDIFGDANAQSLSRREIVLQMQQY 277
>gi|88800086|ref|ZP_01115656.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
gi|88777212|gb|EAR08417.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
Length = 338
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 159/252 (63%), Gaps = 5/252 (1%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q P F VAPMMDWT + R RL+++ A LYTEM+ +I+ GN RFL + E+
Sbjct: 3 QAYPHKFQVAPMMDWTTSECRQFHRLLTRQALLYTEMVTTGALIH--GNAGRFLRYDTEE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HPI LQ+GG + D LA T++A + YD++NLN GCPS +V +G G LM V +
Sbjct: 61 HPIALQLGGHDADELAHCTKMAEEHGYDQVNLNAGCPSDRVQ-NGMIGAILMAHADKVTD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
A+ + N+PV++K RIG+DD+DSY L DF+ +VS LS FI+H+RKA+L+G+SP
Sbjct: 120 ALKAMQDRVNIPVTLKHRIGIDDYDSYEFLRDFVGQVS-LSGCDTFIVHARKAILSGLSP 178
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y+ L +DFP+L +NGGI + E A + +G VM+GR AYQNP
Sbjct: 179 KENREIPPLDYDRVIRLKQDFPNLNIVINGGIKSHQEAQALINRGLDGVMLGREAYQNPL 238
Query: 245 YTLGHVDTAIYG 256
L VD YG
Sbjct: 239 -ILSEVDHIYYG 249
>gi|407939138|ref|YP_006854779.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
gi|407896932|gb|AFU46141.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
Length = 328
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 170/296 (57%), Gaps = 9/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+++ LYTEM+ A I+Y G +R L F+ E+HP+ LQ+GG+
Sbjct: 1 MMDWTDRHCRYFHRLLTRQTLLYTEMVNAGGILY--GGTERHLRFNAEEHPVALQLGGNE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D LA+A L + YDEINLNCGCPS +V G FG SLM P+ V + + + +V
Sbjct: 59 PDKLAQAARLGEEWGYDEINLNCGCPSDRVQ-RGAFGASLMKAPQLVADGIKAMKDVVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D + Y + DF+ V+ T FI+H+R A L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDKVEDYGFVRDFVGTVAEAGCTV-FIVHARNAWLQGLSPKENRDIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E + L +FP T +NGGI T D V L+ VM+GR AY NPW+ L D Y
Sbjct: 177 EVVHRLKAEFPQFTIAINGGITTDDVVQEQLQH-LDGVMIGREAYHNPWW-LARWDQLYY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G LTR +V Y + +G PH + + +L HS PG ++++
Sbjct: 235 GGAPCPLTREEVELAMVEYMEREAAQHGTPWPH---IARHMLGLRHSLPGARIWRQ 287
>gi|445193192|ref|ZP_21400083.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866688|gb|ELX91410.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
Length = 239
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 150/230 (65%), Gaps = 5/230 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 15 FSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 72 LGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 131 DVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240
PPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AY
Sbjct: 191 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAY 239
>gi|298158920|gb|EFH99980.1| tRNA dihydrouridine synthase A [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 339
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 187/333 (56%), Gaps = 17/333 (5%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
+R L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL
Sbjct: 15 SRAVLSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDE 72
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
+HP+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V
Sbjct: 73 TEHPLALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELV 131
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ + + +PV+VK RIG++ DSY +LCDF+ KV + F +H+R A+L G+
Sbjct: 132 ADCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCGSFTVHARIAILEGL 190
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY N
Sbjct: 191 SPKENRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHN 249
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P Y L HVD ++ + + ++R +E + Y A + + GN R ++ L F
Sbjct: 250 P-YLLAHVDQQLFDSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF--- 305
Query: 303 EPGNGLFKR-------KADAAFQTCKTVKSFLE 328
PG F++ KA+ +FLE
Sbjct: 306 -PGARRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|387773516|ref|ZP_10128874.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386904865|gb|EIJ69648.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 321
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 179/303 (59%), Gaps = 16/303 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ A II+ + +L L ++P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDL---LEYNPAENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y E+NLN GCPS +V +G FG LM V + + +
Sbjct: 67 LGGSDPKQLAHCAKLVEERGYAEVNLNVGCPSDRVQ-NGMFGACLMGKADLVADCIKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L+G+SP ENR I
Sbjct: 126 DAVQIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDF L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFSHLNISINGGIKTIEEIKHHL-QFVDGVMVGREAYQNP-SLLGEI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D+ I+G +T R+ VEK Y + L G Y N+ +++ +L F + G
Sbjct: 242 DSQIFGENRPLVTAREAVEKMLPYIEQELAKGVYLNH------IVRHILGAFQNCKGARQ 295
Query: 309 FKR 311
++R
Sbjct: 296 WRR 298
>gi|387769798|ref|ZP_10125995.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
gi|386905968|gb|EIJ70718.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
Length = 325
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 186/328 (56%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ A IIY + + L F ++P+ LQ
Sbjct: 11 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTAPAIIYAKYD---HLDFDLSENPVALQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y E+NLN GCPS +V +G FG LM V E + +
Sbjct: 68 LGGSDPEQLQHCAKLAQERGYTEVNLNVGCPSDRVQ-NGMFGACLMAKSDLVAECVESMQ 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC+FI KV + FI+H+RKA L+G+SP ENR I
Sbjct: 127 KVVDIPVTVKTRIGIDELDSYEFLCEFIEKVHA-KGCNEFIVHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 186 PPLNYERVYQLKRDFPQLKISINGGIKTIEEILTHLQY-VDGVMVGREAYQNP-SLLGKI 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T R+ VEK Y + L G + N+ + + +L F + G
Sbjct: 244 DQALFDPNAPIITAREAVEKMLPYIEQQLSQGIFLNH------IARHMLGAFQNCKGARQ 297
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R K A + SF+EE
Sbjct: 298 WRRHLSENTHKQGAGIEIVTQALSFIEE 325
>gi|347757860|ref|YP_004865422.1| tRNA-dihydrouridine synthase A [Micavibrio aeruginosavorus ARL-13]
gi|347590378|gb|AEP09420.1| tRNA-dihydrouridine synthase A [Micavibrio aeruginosavorus ARL-13]
Length = 334
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 185/331 (55%), Gaps = 12/331 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P SVAPM+DWTD H R R + H LYTEM+ II+ G+ DR+LAFSP +HP+
Sbjct: 8 PEISVAPMLDWTDRHCRVFLRSFAPHVRLYTEMVTTGAIIF--GDRDRYLAFSPSEHPVA 65
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS- 127
LQ+GGS+ +L + + Y YDEINLNCGCPS +V +G FG LM DP VG+ +S
Sbjct: 66 LQLGGSDPAHLGQCAAIGADYGYDEINLNCGCPSDRVQ-NGAFGACLMKDPGRVGDCVSN 124
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+I A + ++VKCRIGVD+ L F+ + + R IIH+RKA L G+SP EN
Sbjct: 125 MINAAQDTEITVKCRIGVDECVDEEFLHAFVKSIHE-AGCRKVIIHARKAWLKGLSPKEN 183
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+Y+ + FPD+ +NGGI T+ E + L VM+GR AYQNPW L
Sbjct: 184 REIPPLRYDIAAGIKTAFPDMRVIVNGGIKTLAETQSHLDT-FDGVMIGREAYQNPW-VL 241
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
++ A+YG P++ +R + Y I P V+ + + +L + + G
Sbjct: 242 TEIEQALYGHPTTA-SRADIARAMIPY---IEERRATGTP-VKSITRHMLGLYQGQRGGR 296
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
+++R T + +E + A+ +V
Sbjct: 297 VWRRILSTEAHLPGTTGAIIETALAAVDQAV 327
>gi|428776577|ref|YP_007168364.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
gi|428690856|gb|AFZ44150.1| tRNA-U16,U17-dihydrouridine synthase [Halothece sp. PCC 7418]
Length = 344
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 172/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R L R I++ LYTEM+ I+ G+ + L FSPE+HP+ LQ
Sbjct: 27 LSVAPMMDRTDRHFRYLMRQITRKTLLYTEMVTIPAIL--NGDRAKLLGFSPEEHPLALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + + A+ +A Y YDEINLN GCPS +V G FG LM P+ V + +
Sbjct: 85 LGGDDPEKAAECARMAADYGYDEINLNVGCPSDRVKS-GNFGACLMAQPETVATVVEAMQ 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D+ D Y + +F+ VS R F +H+RKA L G+SP ENR +
Sbjct: 144 NAVEIPVTVKHRIGIDERDRYEDMSEFVRVVSEAGCQR-FTVHARKAWLQGLSPKENRNV 202
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L ++FP L +NGGI T+ E+ L VM+GRAAY NP Y V
Sbjct: 203 PPLRYEDVYRLKQEFPQLFIEINGGIKTLPEIKEHLNH-LDAVMIGRAAYDNP-YLFATV 260
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG T ++VVE Y L + N + + + L+H F+ +PG ++
Sbjct: 261 DQEIYGQDDPPPTMKEVVEAMLPY----LDYWVNRGLKLNSMTRHLIHIFNGQPGAKAWR 316
Query: 311 R 311
R
Sbjct: 317 R 317
>gi|417839195|ref|ZP_12485394.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
gi|341954425|gb|EGT80906.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
Length = 329
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLTYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PSLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T +VV+ Y + L N H+ +++ +L F + G ++
Sbjct: 246 DQALFDPSAPIVTAHEVVQSMLPYIEQQL----NQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALSFVE 326
>gi|161870721|ref|YP_001599894.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 053442]
gi|161596274|gb|ABX73934.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 336
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP+L +NGG+ T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPELEIIINGGVTTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V++ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|254252479|ref|ZP_04945797.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
gi|124895088|gb|EAY68968.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
Length = 242
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 156/239 (65%), Gaps = 6/239 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD H R+ R ++++ WLYTEM+ +++ G++ R L F+P +
Sbjct: 7 LPPRRVSVAPMLDWTDRHCRSFHRTLTRNTWLYTEMITTGALLF--GDVQRHLGFTPSES 64
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS D+LA+A +L + YDEINLNCGCPS +V G FG LM +P+ V +
Sbjct: 65 PVALQLGGSEPDDLARAAKLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMKEPQLVADC 123
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + +VPV+VK RIGVD + Y + DF+ ++ + R FI+H+R A+L G+SP
Sbjct: 124 VKAMRDAVSVPVTVKHRIGVDAIEDYAFVRDFVGTIAD-AGCRTFIVHARNAILKGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPLKY+Y Y L RDFP L +NGGI T+DEV L M+GR AY NP+
Sbjct: 183 ENREIPPLKYDYAYRLKRDFPSLEIVINGGIKTLDEVALHLEH-VDGAMLGREAYHNPY 240
>gi|395006482|ref|ZP_10390300.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
gi|394315574|gb|EJE52368.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
Length = 341
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/291 (43%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R RL+++ LYTEM+ A II+ G +R L F+ E+HP+
Sbjct: 18 PWRMSVAPMMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIH--GGTERHLRFNAEEHPV 75
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GG+ + LA+A L + Y EINLNCGCPS +V G FG SLM P+ V + +
Sbjct: 76 ALQLGGNEPELLAQAARLGAQWGYGEINLNCGCPSDRVQ-RGAFGASLMKAPQLVADGVK 134
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIG+D + Y + DF+ V+ T FI+H+R A L G+SP EN
Sbjct: 135 AMKDVVDVPVTVKHRIGIDKVEDYGFVRDFVGTVADAGCTV-FIVHARNAWLQGLSPKEN 193
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE + L ++FP LT +NGGI DEV + VM+GR AY NPW+ L
Sbjct: 194 RDIPPLRYEVVHRLKQEFPQLTIAINGGIQA-DEVVLEQLQHLDGVMIGREAYHNPWW-L 251
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 298
D YG LTR +V Y + +G PH+ M L H
Sbjct: 252 ARWDQIYYGGEPCALTREEVELAMVDYMEREAALHGTPWPHIARHMLGLRH 302
>gi|381395425|ref|ZP_09921125.1| tRNA-dihydrouridine synthase A [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328952|dbj|GAB56258.1| tRNA-dihydrouridine synthase A [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 345
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 178/302 (58%), Gaps = 11/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPM+DWTD H R RL+S + LYTEM+ II+ +G+ +L F +HP+VLQ
Sbjct: 10 FCVAPMLDWTDRHCRYFLRLLSSRSVLYTEMVTTGAIIHGRGD---YLHFDKAEHPLVLQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++AK LA + YDEIN+N GCPS +V +G FG LM P V E + +
Sbjct: 67 LGGSNAADMAKCAALAQSRGYDEININVGCPSDRVK-NGSFGACLMSSPSVVAECVRAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VKCRIG+DD D L F+ + + HFI+H+RKA L G+SP +NR I
Sbjct: 126 AEVDIPVTVKCRIGIDDMDDDAGLSGFVLPIYE-AGCEHFIVHARKAWLQGLSPKQNRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE + L +D P L ++NGGI T+++ L+ VM+GR Y NP + L +V
Sbjct: 185 PPLNYERVHRLKQDNPALKISINGGITTLEQAKHQLQY-VDGVMMGREVYANP-FILSNV 242
Query: 251 DTAIYG-APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
D I+G A +TR +VV Y + + + G H + + +L F S+ G ++
Sbjct: 243 DAEIFGHANDDQITRSEVVYAMSAYINEQVSSSGARVWH---IARHMLGLFQSQVGGKIW 299
Query: 310 KR 311
+R
Sbjct: 300 RR 301
>gi|352079900|ref|ZP_08950969.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
gi|351684609|gb|EHA67678.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
Length = 328
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 180/306 (58%), Gaps = 15/306 (4%)
Query: 8 PPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
PPW SVAPMMDWTD H R RL+S A LYTEM+ + ++ +G R L S ++HP
Sbjct: 9 PPWQLSVAPMMDWTDRHCRYFHRLLSPRARLYTEMVTSAALV--RGKQLRLLEHSQQEHP 66
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS LA+A L YDEINLN GCPS +V G FG LM +P V + +
Sbjct: 67 LALQLGGSEPYELAQAARLGAEAGYDEINLNVGCPSDRVQS-GRFGACLMYEPALVADCV 125
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +VPV+VKCRIGVDD D Y L F ++ + ++H+RKA L G+SP E
Sbjct: 126 KAMRDAVSVPVTVKCRIGVDDQDDYAGLQQFT-ELMLEAGVEVLVVHARKAWLKGLSPKE 184
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR +PPL Y Y L R+FP L +NGGI+TVD+V + L + VM+GRAAY +P Y
Sbjct: 185 NREVPPLDYARVYRLKREFPPLVVVINGGISTVDQVRSHLAQ-LDGVMLGRAAYHDP-YL 242
Query: 247 LGHVDTAIYGAPSSGLTRRQ-VVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L ++ A++ P L RR+ V+++ + Y +A L G H+ + LL + EPG
Sbjct: 243 LAQLEHALHDEP---LPRREDVLQRLRPYVEAELAR-GTALKHIS---RHLLGLYQGEPG 295
Query: 306 NGLFKR 311
F+R
Sbjct: 296 ARAFRR 301
>gi|145633883|ref|ZP_01789604.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145635660|ref|ZP_01791356.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
gi|144985255|gb|EDJ92098.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145267055|gb|EDK07063.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
Length = 329
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 186/326 (57%), Gaps = 18/326 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R K A + +T SF+E+
Sbjct: 302 RYLSENAFKQGAGVEVVETALSFVEK 327
>gi|167855851|ref|ZP_02478602.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
gi|167853001|gb|EDS24264.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
Length = 323
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 188/326 (57%), Gaps = 23/326 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R ++H+ LY+EM+ A I++ + +L LA+ P ++P+ LQ
Sbjct: 10 FSVAPMLDWTTRHCRYFHRQFTQHSLLYSEMIIAPAILHAKYDL---LAYDPTENPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LAK +L Y EINLN GCPS +V +G FG LM V + +
Sbjct: 67 LGGSDPEQLAKCAKLVEERGYAEINLNVGCPSDRVQ-NGMFGACLMGKADLVARCVEAMK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI K+ FI+H+RKA L+G+SP ENR I
Sbjct: 126 KEVSIPVTVKHRIGIDDLDSYEFLCDFIEKIQPY--CNDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG++
Sbjct: 184 PPLDYERVYQLKRDFPHLKISINGGIKTIEEIKHHL-QFVDGVMVGREAYQNP-SLLGYI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ + +T +Q VEK Y + L G Y N+ +++ +L F + G
Sbjct: 242 DQELFDPNADIVTPKQAVEKMLPYIEQQLSQGVYLNH------IVRHILGAFQNCKGARR 295
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R K A + + SFL
Sbjct: 296 WRRHLSENACKQGAGVEVVEQALSFL 321
>gi|152978183|ref|YP_001343812.1| tRNA-dihydrouridine synthase A [Actinobacillus succinogenes 130Z]
gi|150839906|gb|ABR73877.1| TIM-barrel protein, yjbN family [Actinobacillus succinogenes 130Z]
Length = 326
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 192/325 (59%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ + I++ + LAF ++P+ LQ
Sbjct: 12 FSVAPMLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIVHAGYD---HLAFDTAENPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 69 LGGSDPVQLAHCAKLAEERGYREINLNVGCPSDRVQ-NGMFGACLMAKADLVAECVTKMQ 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+D+ DSY L DF++K+++ + + I+H+RKA L+G+SP ENR I
Sbjct: 128 AAVSIPVTVKTRIGIDELDSYEFLYDFVHKITN-AGCQELIVHARKAWLSGLSPKENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP + ++NGGI T++E+ A L++ VMVGR AYQNP LG++
Sbjct: 187 PPLDYERVYQLKRDFPHILISINGGIKTIEEMTAHLQQ-VDGVMVGREAYQNP-SLLGYI 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T R+ VE Y + L N ++ +++ +L F G ++
Sbjct: 245 DQALFDPTARIVTAREAVENMFPYIEQQL----NRGVYLNHIVRHILGAFQGCKGARQWR 300
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 301 RYLSENAYKPGADAEVVRTALSFVE 325
>gi|359435578|ref|ZP_09225772.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
gi|357917733|dbj|GAA62021.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
Length = 313
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 187/324 (57%), Gaps = 11/324 (3%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ+G
Sbjct: 1 MAPMLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNKHEGPVALQLG 57
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS+ LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 58 GSDPKALAQCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKNE 116
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
N+PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +PP
Sbjct: 117 VNIPVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPP 175
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
L Y Y L +D+P L +LNGG+ T+++ L+ VM+GR AY NP + L VD
Sbjct: 176 LDYPRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDE 233
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK 312
IYG ++ +R VV Y + + G N H + + +L F +PG F+R
Sbjct: 234 KIYGDAANTQSRHDVVRSMYDYIEEEM-RLGANFWH---IARHMLGIFQGQPGARGFRRH 289
Query: 313 ADAAFQTCKTVKSFLEETIVAIPD 336
+ + S +++ + +P+
Sbjct: 290 LSESGHGKQADLSVMDKALSFVPE 313
>gi|345429046|ref|YP_004822163.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
gi|301155106|emb|CBW14569.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
Length = 328
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 189/327 (57%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SK+A LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L +LA Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGSDPAQLKHCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVAECIAEMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD DSY LCDFI KV + FI+H+RKA L+G+SP ENR I
Sbjct: 129 RVVNIPVTVKTRIGIDDLDSYEFLCDFIEKVHH-DGCQEFIVHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L +DFP LT +NGGI T++E+ L + VMVGR AYQNP LG++
Sbjct: 188 PPLDYDRVYQLKKDFPQLTIAINGGIKTIEEMKYHL-QFVDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A + +T +Q VE Y + L G Y N+ +++ +L F + G
Sbjct: 246 DQMLFDANADIVTPKQAVEAMFPYIEKQLSQGVYLNH------IVRHMLGAFQNCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLE 328
++R K A + +T SF+E
Sbjct: 300 WRRYLSENAFKQGAGIEVVETALSFVE 326
>gi|89256833|ref|YP_514195.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115315219|ref|YP_763942.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|169656701|ref|YP_001429066.2| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254369716|ref|ZP_04985726.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC022]
gi|290954380|ref|ZP_06559001.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica URFT1]
gi|422939136|ref|YP_007012283.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|423051205|ref|YP_007009639.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica F92]
gi|89144664|emb|CAJ79988.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115130118|gb|ABI83305.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|157122675|gb|EDO66804.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC022]
gi|164551769|gb|ABU62110.2| tRNA dihydrouridine synthase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294287|gb|AFT93193.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|421951927|gb|AFX71176.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
holarctica F92]
Length = 327
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 190/320 (59%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 8 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA +Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPKDFISCGKLAEELDYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E+ L K VM+GR AY NP
Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 297
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 298 YRRYLSENATKKEANVDTFL 317
>gi|84515494|ref|ZP_01002856.1| tRNA-dihydrouridine synthase A [Loktanella vestfoldensis SKA53]
gi|84510777|gb|EAQ07232.1| tRNA-dihydrouridine synthase A [Loktanella vestfoldensis SKA53]
Length = 315
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 172/296 (58%), Gaps = 9/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R L RL+S+H +Y+EM+ A +I+ G+ DR + + P +HP+ LQ+GGS+
Sbjct: 1 MMDWTDRHCRYLHRLMSRHVLVYSEMVTAPAVIH--GDRDRLIGYGPAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A +A YDE+NLNCGCPS +V G FG LM + V E ++ + A ++
Sbjct: 59 PALLAQAARIAADMGYDEVNLNCGCPSDRVQS-GFFGAVLMENAALVAECVAAMIAAVDI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIGVDD + L DFI +VS+ R F IH+RKA L G+SP ENR IPPL +
Sbjct: 118 PVTVKCRIGVDDQTPSDVLPDFIARVSAAGVDR-FSIHARKAWLQGLSPKENRDIPPLDH 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ A+ FP L ++NGGI ++D+ L +G VM+GRAAY P L D IY
Sbjct: 177 DLVIAMKALFPHLHLSVNGGITSLDQAQDFLDRGLDGVMIGRAAYHTPCDILLDADARIY 236
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
P SG + VV Y + + N + + + +L F PG ++R
Sbjct: 237 ADP-SGRSAEDVVHLMLPY----IAEHLQNGGRLGQITRHMLGMFQGRPGAKAWRR 287
>gi|254508997|ref|ZP_05121103.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
gi|219548101|gb|EED25120.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
Length = 315
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 174/296 (58%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL++ LYTEM+ IIY +G+ FLA++ E+HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIYGKGD---FLAYNEEEHPVALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + ++
Sbjct: 58 PQDLATCAKLAAERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMRDVVDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +DF L +NGG+ T+ + + L VMVGR AYQNP Y L VD I+
Sbjct: 177 PRAYQLKKDFAHLNIAVNGGVKTLGDSLSHLEH-VDGVMVGREAYQNP-YLLAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G R QVV++ Y +A L + ++ + + ++ F + PG ++R
Sbjct: 235 GLDKPIKKRSQVVKEMYPYIEAQL----SKGAYLGHITRHMIGLFQAMPGARQWRR 286
>gi|221638336|ref|YP_002524598.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides KD131]
gi|221159117|gb|ACM00097.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides KD131]
Length = 313
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 171/296 (57%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+++ A LYTEM+ A +I+ G DR L FS +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GQRDRLLGFSEAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A LA Y YDEINLN GCPS +V GCFG LM P V + ++ + A + V
Sbjct: 59 PAELAQAVRLAEPYGYDEINLNVGCPSDRVQS-GCFGAVLMERPSLVADCVAAMIAESPV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIGVD+ + L F+ +++ + RHF+IH+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKCRIGVDEQEPSEVLPAFLETLAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
A+ R FP+LT LNGG+ ++ + A L +G +M+GRAAY P L D
Sbjct: 177 PLVIAMKRRFPELTICLNGGVGSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWG 235
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
P L V+ + Y A L G R H + + +L F PG ++R
Sbjct: 236 EEPPRDLA--AVLADMRPYISAHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|77462473|ref|YP_351977.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides 2.4.1]
gi|77386891|gb|ABA78076.1| tRNA-Dihydrouridine synthase [Rhodobacter sphaeroides 2.4.1]
Length = 313
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 171/296 (57%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+++ A LYTEM+ A +I+ G DR L FS +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GPRDRLLGFSEAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A LA Y YDEINLN GCPS +V GCFG LM P V + ++ + A + V
Sbjct: 59 PAELAQAVRLAEPYGYDEINLNVGCPSDRVQS-GCFGAVLMERPSLVADCVAAMIAESPV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIGVD+ + L F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKCRIGVDEQEPSEVLPAFLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
A+ R FP+LT LNGG+ ++ + A L +G +M+GRAAY P L D
Sbjct: 177 PLVIAMKRRFPELTICLNGGVGSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWG 235
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
P L V+ + Y A L G R H + + +L F PG ++R
Sbjct: 236 EEPPRDLA--AVLADMRPYISAHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|381406043|ref|ZP_09930727.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
gi|380739242|gb|EIC00306.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
Length = 330
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 181/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSDAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGRFGACLMAEATLVADAVKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYAFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E A L VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQAHLEH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G +VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQQLFGRQHPAANPVEVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|440731707|ref|ZP_20911697.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
gi|440371128|gb|ELQ07985.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
Length = 339
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 181/327 (55%), Gaps = 22/327 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A ++ G+ R L F +HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVL--GDRARLLGFDAVEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + + YDEINLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 78 LGGSDPALLAQAARIGQGWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVATMV 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCR+GVD D Y F+ +V++ + F++H+R A L G+SP ENR +
Sbjct: 137 QAVDIPVTVKCRLGVDQDDDYEVFLAFVDQVAA-AGCGLFVVHARNAWLQGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L R+ P L LNGG+ VD A L VM+GRAAY +P Y L +
Sbjct: 196 PPLRYDWAYRLKRERPQLQVVLNGGLADVDTARAQL-DAVDGVMLGRAAYHDP-YVLHRL 253
Query: 251 DTAIYGA---PSSGLTR--RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
D A+ GA P + L R R VE G A+ + + + LL FH +PG
Sbjct: 254 DAALTGATPRPRAALLRALRPYVETRLADGVAL-----------KHIARHLLGLFHGQPG 302
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIV 332
F++ + LE+ ++
Sbjct: 303 GRAFRQVLSEGAHRLGADWALLEQALL 329
>gi|113460197|ref|YP_718254.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 129PT]
gi|112822240|gb|ABI24329.1| tRNA-U16,U17-dihydrouridine synthase [Haemophilus somnus 129PT]
Length = 328
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 189/328 (57%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S++ LYTEM+ II+ + + LA+ ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRFFHRQFSQYTLLYTEMVTTGAIIHAKYD---HLAYDVSENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L + A Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGSDPEKLQYCAKKAEERGYQEINLNVGCPSDRVQ-NGMFGACLMARADLVAECVNAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+PV+VK R+G+D+ DSY LCDFI KV ++ + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVNIPVTVKTRLGIDEFDSYEFLCDFIEKVHNIG-CQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFPDL ++NGGI T++E+ L VMVGR AYQNP LG++
Sbjct: 188 PPLNYERVYQLKKDFPDLLISINGGIKTLEEIQRHLNY-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T RQ +E Y + L G Y N+ + + LL F G
Sbjct: 246 DQALFDPSCAIITPRQAIENMFPYIEQQLSQGVYLNH------IARHLLGAFQQCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R K+ A + + +F+EE
Sbjct: 300 WRRYMSENIHKSHAGVEVIEKALTFIEE 327
>gi|410863004|ref|YP_006978238.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii AltDE1]
gi|410820266|gb|AFV86883.1| tRNA-dihydrouridine synthase A [Alteromonas macleodii AltDE1]
Length = 338
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 165/265 (62%), Gaps = 8/265 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+SKH LYTEM+ IIY +G+ +L ++ E+HPI +Q
Sbjct: 10 FSVAPMLDWTDRHCRYFLRLMSKHTLLYTEMVTTGAIIYGKGD---YLGYNKEEHPIAVQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++AK EL+ YDE+N+N GCPS +V +G FG LM P+ V + +
Sbjct: 67 LGGSDPSDMAKCAELSQERGYDEVNINVGCPSDRVK-NGSFGACLMAQPEVVASCVKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++PV+VKCRIG+DD D FI V+ + FI+H+RKA L G+SP ENR I
Sbjct: 126 SAVDIPVTVKCRIGIDDMDEDEDFTRFIDTVAD-AGCDTFIVHARKAWLQGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L+ ++NGGI T+ E L + VMVGR Y NP + + V
Sbjct: 185 PPLNYPRVHRLKQARPELSISINGGIKTLAETQQQL-ESVDGVMVGREVYANP-FIMSSV 242
Query: 251 DTAIYG-APSSGLTRRQVVEKYQIY 274
D I+G A + L+RR++V + Q Y
Sbjct: 243 DKDIFGDANAQSLSRREIVLQMQQY 267
>gi|241766211|ref|ZP_04764111.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
gi|241363710|gb|EER59087.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
Length = 313
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 157/252 (62%), Gaps = 6/252 (2%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R L RL+S+H LYTEM+ +I+ G+++R L ++ E+HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRYLHRLLSRHTLLYTEMVTTGALIH--GDVERHLRYNAEEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA L + YDEINLNCGCPS +V G FG LM +P+ V + + + +
Sbjct: 59 PADLAHCARLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMVDVVQI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D +SY + DFI V++ + FI+H+R A L G+SP ENR +PPL+Y
Sbjct: 118 PVTVKHRIGIDKDESYGFVRDFIGTVAA-AGCEVFIVHARNAWLKGLSPKENREVPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT +NGGI T D V+ L VMVGR AY NPW+ L D Y
Sbjct: 177 AVVHQLKRDFPHLTIAINGGIQTDDVVHEQLGH-LDGVMVGREAYHNPWW-LARWDALYY 234
Query: 256 GAPSSGLTRRQV 267
GAP S LTR V
Sbjct: 235 GAPESSLTRDDV 246
>gi|429082481|ref|ZP_19145549.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
gi|426548749|emb|CCJ71590.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
Length = 313
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 175/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADGIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFVNTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH--VMVGRAAYQNPWYTLGHVDTA 253
Y L RDFP LT ++NGGI T+++V L AH VMVGR AYQNP L VD
Sbjct: 177 PRVYQLKRDFPHLTMSINGGIKTLEDVKTHL---AHMDGVMVGREAYQNPG-ILASVDRE 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
I+G + VV Y + L +N ++ V + +L F PG ++R
Sbjct: 233 IFGLDTPDADPVAVVRAMYPYIEREL----SNGTYLGHVTRHMLGLFQGIPGARQWRR 286
>gi|332560358|ref|ZP_08414680.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
gi|332278070|gb|EGJ23385.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
Length = 313
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 171/296 (57%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+++ A LYTEM+ A +I+ G DR L FS +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRFFHRLMTRRAMLYTEMVTAPAVIH--GPRDRLLGFSEAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A LA Y YDEINLN GCPS +V GCFG LM P V + ++ + A + V
Sbjct: 59 PAELAQAVRLAEPYGYDEINLNVGCPSDRVQS-GCFGAVLMERPALVADCVAAMIAESPV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIGVD+ + L F+ V++ + RHF+IH+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKCRIGVDEQEPSEVLPAFLETVAA-AGVRHFVIHARKAWLQGLSPRENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
A+ R FP+LT LNGG+ ++ + A L +G +M+GRAAY P L D
Sbjct: 177 PLVIAMKRRFPELTICLNGGVGSLTQAEALLAQGLDGIMIGRAAYNEPELLL-EADRLWG 235
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
P L V+ + Y A L G R H + + +L F PG ++R
Sbjct: 236 EEPPRDLA--AVLADMRPYISAHL--EGGGRLH--QITRHMLGLFAGRPGARHWRR 285
>gi|82753060|ref|XP_727524.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483411|gb|EAA19089.1| Uncharacterized protein family UPF0034, putative [Plasmodium yoelii
yoelii]
Length = 531
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 212/399 (53%), Gaps = 47/399 (11%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
+ + P VAPM++ T+ H+R L R+ISK L+TEM+ T++Y NL+ L F+
Sbjct: 147 KNEIEPLIQVAPMINVTNRHFRALVRIISKKVQLWTEMIVDNTLLYNINNLEEHLGFNKN 206
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HPIV Q+GGS+ +L++A L YDEIN+N GCPS KVA G FG LM +P+ V
Sbjct: 207 EHPIVCQLGGSDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVK 266
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ I +PV+VK R GVD+ DS++ L FI VSS + HFIIHSRKA L G+
Sbjct: 267 NIVYEIKKKVQIPVTVKIRTGVDNLDSFSFLRSFIETVSS-AGCDHFIIHSRKAWLKGLD 325
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--------KGAHH--- 232
P +NR+IPPL+Y + L + +P + FTLNGGI ++++ A L G H+
Sbjct: 326 PKQNRSIPPLEYNKVFDLCKLYPHIKFTLNGGIKSIEQGVALLNGYAPINNMSGKHNNST 385
Query: 233 -----------------VMVGRAAYQNPWYTLGHVDTAIYG--APSSGLTRRQVVEKYQI 273
VM+GRA +N L D +Y +PS+ +RR V++ Y+
Sbjct: 386 DNNYIKIEDYDINPLYGVMIGRACMEN-ITVLAKTDKLVYNYDSPSTAHSRRTVLDAYKF 444
Query: 274 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 333
Y + Y + +++KP+L PG+ LF+ K D+ + + + +
Sbjct: 445 YLEQNSSFY--TLVNAFELLKPILGILKGMPGHRLFRNKIDSYIRKYASTLNCAQ----- 497
Query: 334 IPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEV 372
+LD +E+ +++ DL+ YKA+++ +
Sbjct: 498 ----ILDKAMEDV----DNIAPGCLDLILDDYKAQQEYI 528
>gi|389732527|ref|ZP_10189473.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
gi|388440416|gb|EIL96798.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
Length = 311
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 171/296 (57%), Gaps = 12/296 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+S HA LYTEM+ + ++ +G R L S ++HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRYFHRLLSPHARLYTEMVTSAALV--RGRQLRLLEHSQQEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A YDEINLN GCPS +V G FG LM +P V + + + +V
Sbjct: 59 PGELAQAARFGAEAGYDEINLNVGCPSDRVQS-GRFGACLMYEPALVADCVKAMRDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIGVDD D Y L F + + ++H+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKCRIGVDDQDDYAGLQHFTETMLE-AGVGVLVVHARKAWLKGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E Y L R+FP L +NGG+ TV++V A L + VM+GRAAY +PW L ++TA+Y
Sbjct: 177 ERVYRLKREFPQLVVAINGGVTTVEQVRAHLAQ-VDGVMLGRAAYHDPWL-LARLETALY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G P R V+++ + Y +A L G H + + LL + EPG F+R
Sbjct: 235 GEPLP--EREAVLQRLRPYVEAELAR-GTALKH---ITRHLLGLYQGEPGARGFRR 284
>gi|422676216|ref|ZP_16735549.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
gi|330973923|gb|EGH73989.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
Length = 339
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP+ LQ
Sbjct: 23 FSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 81 LGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+SP ENR I
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLSPKENRDI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L DFP L LNGGI T+++ + L+ VM+GR AY NP Y L HV
Sbjct: 199 PPLRYDVVAQLKSDFPGLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAHV 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + ++R +E + Y A + + GN R ++ L F PG F+
Sbjct: 257 DQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGARRFR 312
Query: 311 R 311
+
Sbjct: 313 Q 313
>gi|89054629|ref|YP_510080.1| tRNA-dihydrouridine synthase A [Jannaschia sp. CCS1]
gi|88864178|gb|ABD55055.1| tRNA-U16,U17-dihydrouridine synthase [Jannaschia sp. CCS1]
Length = 329
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 167/301 (55%), Gaps = 8/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMDWTD H R RL+S+ A LYTEM+ + +I G+ +R L F P +HP+ LQ
Sbjct: 9 LSIAPMMDWTDRHCRYFHRLMSRDALLYTEMVTSAAVI--NGDRNRLLRFDPAEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA A + + YDE+NLN GCPS +V GCFG LM P V E + +
Sbjct: 67 LGGSDPAELAHAVRIVRDWGYDEVNLNVGCPSDRVQS-GCFGAVLMRQPDLVAECVRAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
V V+VKCRIGVDD D + L F+ + + TR IH+RKA L G+SP +NR +
Sbjct: 126 DECPVDVTVKCRIGVDDQDPEDALPRFLEAMVTAGVTR-VTIHARKAWLQGLSPKQNRDV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + + + FP L +LNGGI T++E A L G VM+GRAAY P L
Sbjct: 185 PPLDYPLVFRMKQMFPQLHISLNGGIATLEEAGAHLEDGLDGVMIGRAAYHTPAEVLLQA 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + + +V Y DA L G + + + +L F PG +K
Sbjct: 245 DQRIFGHATPARSAEEVALLMLPYIDAHLTDGGR----LNQITRHILGLFAGRPGARGWK 300
Query: 311 R 311
R
Sbjct: 301 R 301
>gi|229845624|ref|ZP_04465749.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
gi|229811424|gb|EEP47128.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
Length = 327
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPVVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|254424029|ref|ZP_05037747.1| TIM-barrel protein, yjbN family [Synechococcus sp. PCC 7335]
gi|196191518|gb|EDX86482.1| TIM-barrel protein, yjbN family [Synechococcus sp. PCC 7335]
Length = 355
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 15/298 (5%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MD TD HYR R I++ LYTEM+ A+ I Y G+LDR + F+P+++P+VLQ+GG +
Sbjct: 1 MDRTDRHYRFFMRQITRRTLLYTEMVNAQAIYY--GDLDRLIGFTPDENPLVLQVGGDDP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA + A + Y EINLN GCPS +V G FG LM P+ V + +S + A + +P
Sbjct: 59 KLLANSARRAAEFGYSEINLNVGCPSDRVQS-GNFGACLMAQPERVADCVSAMIAASALP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
VSVK RIG+DD DSY + +F+ VS+ R F +H+RKA L G+SP +NR IPPL+Y
Sbjct: 118 VSVKHRIGIDDQDSYEDMANFVTIVSATGCQR-FSVHARKAWLQGLSPKDNRNIPPLRYA 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
+ L ++FP L +NGG T+ +V LR VM+GRAAY P + D I+G
Sbjct: 177 DVHRLKQEFPHLQIEINGGFKTLAQVKNQLR-AVDAVMIGRAAYDIP-FLFEKADQEIFG 234
Query: 257 APSSGLTRRQVVEK---YQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+ TR QVVE Y Y LGT + + + +LH FH +PG+ ++K+
Sbjct: 235 ETTEPQTRYQVVESMLPYIDYHTQKLGT------RLHSITRHMLHLFHGQPGSRIWKQ 286
>gi|291086669|ref|ZP_06356403.2| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
gi|291067402|gb|EFE05511.1| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
Length = 313
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 174/298 (58%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+ LYTEM+ I++ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIVHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAQCAKLAEQRGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDFI V+ FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDLDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L RDFP LT ++NGGI +++E L+ VMVGR AYQNP L VD I+
Sbjct: 177 ARVYQLKRDFPHLTMSINGGIKSLEEAKIHLQH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
A + VV Y + L GTY + V + +L F PG ++R
Sbjct: 235 AAATHDADPVAVVRAMYPYIERELSQGTY------LGHVTRHMLGLFQGIPGARQWRR 286
>gi|386333724|ref|YP_006029895.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
gi|334196174|gb|AEG69359.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
Length = 344
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 170/279 (60%), Gaps = 17/279 (6%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 10 PRRLSVAPMMDWTDRHCRYFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDETEHPV 67
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS D+LA++ L + Y EINLNCGCPS +V G FG LM +PK V + +
Sbjct: 68 ALQLGGSEPDDLAQSARLGERWGYREINLNCGCPSERVQ-RGAFGACLMAEPKLVADCVR 126
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 127 AMRDAVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKEN 185
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWY 245
R IPPL+YE Y L RDFP L LNGG+ +++++ L AH VM+GR AY +P +
Sbjct: 186 REIPPLRYEVAYQLKRDFPRLEILLNGGVQALEQIDTHL---AHVDGVMIGREAYHHP-H 241
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
+ + D YGA + TR +V DA++G G
Sbjct: 242 LMANFDARYYGADTVAPTRAEVE-------DAMIGYIGR 273
>gi|421564557|ref|ZP_16010355.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
gi|402345825|gb|EJU80930.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
Length = 336
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 181/306 (59%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++AWLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|16272577|ref|NP_438794.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae Rd KW20]
gi|260581551|ref|ZP_05849356.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
gi|1176344|sp|P44794.1|DUSA_HAEIN RecName: Full=tRNA-dihydrouridine synthase A
gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260091796|gb|EEW75754.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
Length = 327
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|148981615|ref|ZP_01816472.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
gi|145960800|gb|EDK26135.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
Length = 315
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 176/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RL+S+ LYTEM+ I++ +G+ FL +S ++HP+ LQ+GGSN
Sbjct: 1 MLDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGD---FLEYSEQEHPLALQLGGSN 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + + + T++
Sbjct: 58 PVDLAACAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVADCVLAMKEVTDI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P++VK RIG+DD DSY L FI VS F IH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PITVKTRIGIDDQDSYEFLTKFISTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ Y + +DF DL +NGGI T+++ L+ VM+GR AY +P + L VD I+
Sbjct: 177 DRAYQIKKDFSDLVIAVNGGITTLEQTKEHLQH-LDGVMIGREAYHSP-FILAEVDQQIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + R QVVE+ Y + L + G + H+ + +L F S PG ++R
Sbjct: 235 GLDTPIKKRSQVVEEMYPYIEREL-SKGASLGHIS---RHMLGLFQSMPGARQWRR 286
>gi|57339642|gb|AAW49808.1| hypothetical protein FTT0508 [synthetic construct]
Length = 362
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 189/320 (59%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 34 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 91
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 92 LGGCVPKDFISCGKLAEELGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 150
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 151 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTI 209
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E+ L K VM+GR AY NP
Sbjct: 210 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDF 267
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 268 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 323
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 324 YRRYLSENATKKEANVDTFL 343
>gi|208778989|ref|ZP_03246335.1| RNA dihydrouridine synthase A [Francisella novicida FTG]
gi|254372562|ref|ZP_04988051.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374021|ref|ZP_04989503.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3548]
gi|151570289|gb|EDN35943.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3549]
gi|151571741|gb|EDN37395.1| RNA dihydrouridine synthase A [Francisella novicida GA99-3548]
gi|208744789|gb|EDZ91087.1| RNA dihydrouridine synthase A [Francisella novicida FTG]
Length = 327
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 189/320 (59%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 8 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPKDFISCGKLAEELGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E+ L K VM+GR AY NP
Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 297
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 298 YRRYLSENATKKEANVDTFL 317
>gi|66045176|ref|YP_235017.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B728a]
gi|63255883|gb|AAY36979.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas syringae pv.
syringae B728a]
Length = 339
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 178/305 (58%), Gaps = 10/305 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ KV + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCESFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFP L LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPGLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++G+ + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR 311
F++
Sbjct: 309 RRFRQ 313
>gi|284006504|emb|CBA71765.1| tRNA-dihydrouridine synthase A [Arsenophonus nasoniae]
Length = 344
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 177/306 (57%), Gaps = 20/306 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K A LYTEM+ +IY +G+ +LA+S E+HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFHRLLTKEALLYTEMVTTGALIYGKGD---YLAYSEEEHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG+ LA ++A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 85 LGGNEPTALAYCAKMAQQSGYDEINLNIGCPSDRVQ-NGRFGACLMREGGLVADCIKAMQ 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+P++VK RIGVDD DSY L DFI K+ + S R FIIH+RKA L+G+SP +NR I
Sbjct: 144 DAATIPITVKTRIGVDDDDSYAFLTDFIDKIVTDSQCRLFIIHARKAWLSGLSPKQNREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH---VMVGRAAYQNPWYTL 247
PPL Y Y L +DFP LT +NGGI +DE L HH VM+GR AYQNP L
Sbjct: 204 PPLDYLRVYQLKKDFPQLTIVVNGGIKNIDEAKQHL----HHLDGVMIGREAYQNPAL-L 258
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPG 305
VD + S + V+ Y + L GTY + + + +L F + PG
Sbjct: 259 TQVDVEFFDQRSLVIDPIIAVQTMYPYIERELKQGTY------LGHITRHMLGIFQAIPG 312
Query: 306 NGLFKR 311
++R
Sbjct: 313 ARQWRR 318
>gi|254293797|ref|YP_003059820.1| yjbN family TIM-barrel protein [Hirschia baltica ATCC 49814]
gi|254042328|gb|ACT59123.1| TIM-barrel protein, yjbN family [Hirschia baltica ATCC 49814]
Length = 327
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R +K A LYTEM+ A+ +++ G+L+ + F+P++ P+ LQ
Sbjct: 9 FSVAPMMDWTDRHCRMFHRAFTKRALLYTEMVTADALLH--GDLEYLIGFNPDEQPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A+++ Y Y EINLNCGCPS +V G FG LM P+ V E +S +
Sbjct: 67 LGGSDPIKLAQASKVGEDYGYSEINLNCGCPSDRVQS-GAFGACLMAQPERVAECISAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCRIG+DD D +L F+ V+ + + FI+H+RKA L G+SP ENR I
Sbjct: 126 NAVDIPVTVKCRIGIDDDDPNERLFSFVNTVAD-AGCQVFIVHARKAWLKGLSPKENRDI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ L + PDLT +LNGG+ + E + VM+GRAAY P + LG V
Sbjct: 185 PPLDYDLVVRLKKARPDLTISLNGGLVDM-EASLDQLSCLDGVMLGRAAYHTP-HILGQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + ++ Q + Y+ Y A L H+ + + ++ F+ + G ++
Sbjct: 243 DRLVFGETTPDVSEHQALATYRPYIKAQL----EKGTHLHAITRHMMGLFNGKRGAKKWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|389583025|dbj|GAB65761.1| tRNA-dihydrouridine synthase A, partial [Plasmodium cynomolgi
strain B]
Length = 485
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 200/368 (54%), Gaps = 35/368 (9%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P+ VAPM++ T+ H+R L R I++ A L+TEM+ T++Y NL+ L F+ +HP+V
Sbjct: 111 PFIQVAPMINVTNRHFRALVRTITRRAQLWTEMIVDNTLLYNLDNLEEHLGFNSNEHPVV 170
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
Q+GGS+ +LA+A L YDEINLN GCPS KVA G FG LM P+ V +
Sbjct: 171 CQLGGSDATSLAEAAVLVEQAGYDEINLNVGCPSTKVANKGAFGAYLMKKPELVRSIVYE 230
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
I ++PVSVK R GVDD DS+ L F+ VSS+ T HFI+H+RKA L G+ P +NR
Sbjct: 231 IKRKVHIPVSVKIRTGVDDCDSFPFLRSFVECVSSVGCT-HFIVHARKAWLKGLDPKQNR 289
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-----RKGA------------- 230
++PPL+Y Y L + +P L FTLNGG+ TV+E A L RK
Sbjct: 290 SVPPLEYHKVYTLCQLYPYLKFTLNGGVKTVEEAVALLNGYLPRKDKFDSEKTYVQVQNY 349
Query: 231 -----HHVMVGRAAYQNPWYTLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYG 283
+ VM+GRA +N L D +Y P + +RR V++ Y+ Y + +
Sbjct: 350 HVNPLNGVMLGRACMENTT-VLSQTDQLVYNEKPPHTAFSRRTVLDAYKSYLEE--NSSL 406
Query: 284 NNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA---AFQTCKTVKSFLEETIV---AIPDS 337
+ +++KP+L PG+ +F+ K D ++ + LE+ ++ A+
Sbjct: 407 CSLSSAFELLKPILGILKGMPGHRIFRNKLDMYIRSYASTLPCSGILEKAMMDVDAVAPG 466
Query: 338 VLDSPIEE 345
LD P+ +
Sbjct: 467 CLDLPLAD 474
>gi|372269222|ref|ZP_09505270.1| tRNA-dihydrouridine synthase A [Alteromonas sp. S89]
Length = 311
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/297 (42%), Positives = 178/297 (59%), Gaps = 15/297 (5%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLAFSPEQHPIVLQIGGS 74
MDW+D H R RL SK A LYTEM+ I++ QQ +LD FS E+ P+ LQ+GGS
Sbjct: 1 MDWSDRHCRYFWRLFSKQALLYTEMVTTGAILFGDQQSHLD----FSVEEQPVALQLGGS 56
Query: 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134
+ +LA+ E+A + Y E+NLNCGCPS +V G FG LM +P V E + + +
Sbjct: 57 DPQDLARCAEIAEQWGYSELNLNCGCPSDRVK-KGRFGACLMAEPDLVAECLGAMREAVS 115
Query: 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK 194
+PV+VK RIG+DD + Y L F+ + + + FI+H+RKA LNG+SP ENR IPPLK
Sbjct: 116 IPVTVKHRIGIDDMEDYPGLTRFV-EAQARAGITTFIVHARKAWLNGLSPKENREIPPLK 174
Query: 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI 254
Y+ Y L +D+P+L LNGGIN+++E L+ VM+GRAAYQ P L VD A+
Sbjct: 175 YDMVYQLKKDYPELEIVLNGGINSIEECQHHLQL-LDGVMLGRAAYQTP-ALLADVDAAL 232
Query: 255 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+G G T QVV++ Y + L T G H++ + + ++ F PG F+R
Sbjct: 233 FGG-EPGPTPAQVVQQMLPYIEQEL-TKGQ---HLKHITRHMMGLFQGVPGARRFRR 284
>gi|390437556|ref|ZP_10226094.1| tRNA-dihydrouridine synthase A [Pantoea agglomerans IG1]
Length = 330
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 181/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEANLVADAVKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPQLTIALNGGVKTLEEAQIHLQH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G +VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQTLFGRQHPAANPVEVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|269137592|ref|YP_003294292.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|387866350|ref|YP_005697819.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
gi|267983252|gb|ACY83081.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|304557663|gb|ADM40327.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
Length = 352
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 176/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 34 FSIAPMLDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPLALQ 90
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 91 LGGSNPADLARCAHLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 149
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D DSY LCDFI V+ FI+H+RKA L+G+SP ENR +
Sbjct: 150 DVVSIPVTVKTRIGIDAQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKENREV 209
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP T LNGG+ +DE L+ VM+GR AY NP L V
Sbjct: 210 PPLDYPRVYRLKQDFPQFTIALNGGVKRLDEALTHLQH-VDGVMMGREAYHNPG-ILAQV 267
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ A ++ VV Y + L GTY + + + +L F PG
Sbjct: 268 DRQLFDADAAVPDSVAVVRALYPYIERELAQGTY------LGHITRHILGLFQGIPGARQ 321
Query: 309 FKR 311
++R
Sbjct: 322 WRR 324
>gi|347822203|ref|ZP_08875637.1| tRNA-dihydrouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 319
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 173/301 (57%), Gaps = 9/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+++ LYTEML A +I+ G +R L F E+HP+ LQ
Sbjct: 1 MSVAPMMDWTDRHCRYFHRLLTRRTRLYTEMLHAGAVIH--GGTERHLRFHAEEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA+A L + YDEINLNCGCPS +V G FG SLM P+ V + + +
Sbjct: 59 LGGSDPADLARAARLGAQWGYDEINLNCGCPSERVQ-RGAFGASLMKAPQRVADCIRAMQ 117
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIGVD + Y + DF+ ++ + FI+H+R A L G+SP ENR +
Sbjct: 118 DQVDVPVTVKHRIGVDRQEDYGFVRDFVGTLTD-AGCNVFIVHARNAWLQGLSPKENRDV 176
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L DFP +T +NGG+++ V LR VMVGRAAY NPW+ L
Sbjct: 177 PPLRYAVVHRLRADFPGITLAINGGMDSDALVQEQLR-ALDGVMVGRAAYHNPWW-LARW 234
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G LTR V Y + +G PH + + +L H PG L++
Sbjct: 235 DALYHGGEPCPLTRDGVELAMLQYMEREAARHGTPWPH---IARHMLGLRHGLPGARLWR 291
Query: 311 R 311
+
Sbjct: 292 Q 292
>gi|330825043|ref|YP_004388346.1| yjbN family TIM-barrel protein [Alicycliphilus denitrificans K601]
gi|329310415|gb|AEB84830.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans K601]
Length = 316
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 174/303 (57%), Gaps = 13/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S+HA LYTEM+ +++ G++ R L F +HP+ LQ
Sbjct: 1 MSVAPMMDWTDRHCRHLHRLLSRHALLYTEMVTTGALLH--GDVPRHLRFGEAEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 59 LGGSEPADLAHSARLGAQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMV 117
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D + Y + DF+ V+ + R FI+H+R A L G+SP ENR I
Sbjct: 118 DVVDMPVTVKHRIGIDQTEDYGFVRDFVGTVAD-AGCRVFIVHARNAWLKGLSPKENREI 176
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV--NAALRKGAHHVMVGRAAYQNPWYTLG 248
PPL+YE L DFP LT +NG + T V AL G VMVGR AY NPW+ L
Sbjct: 177 PPLRYEVAARLKSDFPQLTIAINGSLQTDAAVLEQLALVDG---VMVGREAYHNPWW-LT 232
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D +GA LTR QV E+ Y + +G H V + +L + PG
Sbjct: 233 RWDELFFGAKPGTLTREQVEEEMVAYMEREAAAHGT---HWYAVARHMLGLRNGLPGARR 289
Query: 309 FKR 311
+++
Sbjct: 290 WRQ 292
>gi|308188956|ref|YP_003933087.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
gi|308059466|gb|ADO11638.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
Length = 330
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 181/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQTHLQH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G +VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQTLFGRQHPAANPVEVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|145642466|ref|ZP_01798016.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|145272834|gb|EDK12730.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 327
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|124024726|ref|YP_001013842.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str.
NATL1A]
gi|123959794|gb|ABM74577.1| tRNA-dihydrouridine synthase [Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 193/329 (58%), Gaps = 13/329 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R L R I+K + LYTEM+ A+ + Y + N ++ L F +HPI +Q
Sbjct: 16 LSIAPMMDCTDRHFRVLMRQITKKSLLYTEMIVAQALHYSK-NRNKLLDFDEIEHPISIQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+A ++A + YDEINLN GCPSP+V G FG LM PK V + +
Sbjct: 75 LGGDNPKLLAEAAQMAEDWGYDEINLNIGCPSPRVKS-GNFGACLMGKPKIVANCIEKMK 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+P++VK R+G+D+ DS + L F+ SL+ FIIH+RKA LNG++P ENRTI
Sbjct: 134 ESCNIPITVKHRLGIDNLDSDDYLLTFV-DTCSLAGADRFIIHARKAWLNGLNPKENRTI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQNPWYTLG 248
PPL+YE L P+L LNGGINT+++ AL+ GA MVGRAAY +P +
Sbjct: 193 PPLQYERVQKLKNHRPELIIELNGGINTINDSIEALKVFDGA---MVGRAAYSHP-FLWT 248
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
+D+ I+G L+R +++++ + + L G + + + +L+ + P +
Sbjct: 249 KIDSLIFGQKEKYLSRSKIIKRLIPFAEKHLENDG----RLWQISRHILNLIENIPNAKI 304
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDS 337
+++ QT K S L++ + D+
Sbjct: 305 LRQELSEKCQTQKADISILKKIAQQLEDA 333
>gi|297565479|ref|YP_003684451.1| yjbN family TIM-barrel protein [Meiothermus silvanus DSM 9946]
gi|296849928|gb|ADH62943.1| TIM-barrel protein, yjbN family [Meiothermus silvanus DSM 9946]
Length = 345
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 191/347 (55%), Gaps = 25/347 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H+R L RL S+ LYTEM+ I++ GN R L F P +HP+ LQ
Sbjct: 10 LSVAPMLDWTDRHFRYLVRLCSRGVRLYTEMVTDRAILH--GNRPRLLDFDPSEHPVALQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + + YDEINLN GCPS +V G G FG LM +P V E + +
Sbjct: 68 LGGSDPALLAEAARIGQDWGYDEINLNLGCPSERVQG-GGFGACLMKEPDLVAECFAAMR 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+ K R+GVDD + Y L F+ K++S+ FI+H+RKA L G+SP ENR I
Sbjct: 127 EAVQLPVTAKHRLGVDDLEDYGYLARFVEKLASVG-VEVFIVHARKAWLQGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L+Y + Y L DFP L F LNGG+ T+DE A L + VM+GRA Y++P + L
Sbjct: 186 PELRYGWVYRLKEDFPHLIFVLNGGVKTLDEAGAHL-EHVDGVMLGRAVYEDP-FVLEEA 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G R QV + Y +A L + + + +L+ F + G ++
Sbjct: 244 DRRFFGLEHRP-QRLQVAQAMIAYAEARL----EEGVPLWSIARHMLNLFKGQRGGKRWR 298
Query: 311 R-----------KADAAFQTCKTV-KSFLEETIVAIPDSVLDSPIEE 345
R KA ++ + V K+ TI ++P L+ P+++
Sbjct: 299 RYLSEHAIRPQAKAQVLWEALEQVTKTPTLRTIASLPK--LEKPLQQ 343
>gi|319762963|ref|YP_004126900.1| tim-barrel protein, yjbn family [Alicycliphilus denitrificans BC]
gi|317117524|gb|ADV00013.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans BC]
Length = 316
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 174/303 (57%), Gaps = 13/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S+HA LYTEM+ +++ G++ R L F +HP+ LQ
Sbjct: 1 MSVAPMMDWTDRHCRHLHRLLSRHALLYTEMVTTGALLH--GDVPRHLRFGEAEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 59 LGGSEPADLAHSARLGAQWGYDEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMV 117
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D + Y + DF+ V+ + R FI+H+R A L G+SP ENR I
Sbjct: 118 DVVDMPVTVKHRIGIDQTEGYGFVRDFVGTVAD-AGCRVFIVHARNAWLKGLSPKENREI 176
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEV--NAALRKGAHHVMVGRAAYQNPWYTLG 248
PPL+YE L DFP LT +NG + T V AL G VMVGR AY NPW+ L
Sbjct: 177 PPLRYEVAARLKSDFPQLTIAINGSLQTDAAVLEQLALVDG---VMVGREAYHNPWW-LT 232
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D +GA LTR QV E+ Y + +G H V + +L + PG
Sbjct: 233 RWDELFFGAKPGTLTREQVEEEMVAYMEREAAAHGT---HWYAVARHMLGLRNGLPGARR 289
Query: 309 FKR 311
+++
Sbjct: 290 WRQ 292
>gi|423201194|ref|ZP_17187774.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
gi|404617766|gb|EKB14700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
Length = 328
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+PDLT LNGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPDLTIALNGGVTSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNNAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|145638041|ref|ZP_01793669.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
gi|145268759|gb|EDK08734.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
Length = 327
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALSFVE 326
>gi|330503878|ref|YP_004380747.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
gi|328918165|gb|AEB58996.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
Length = 312
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 176/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R +S+HA LYTEM+ +I+ G+ +RFL +S +HPI LQ+GGSN
Sbjct: 1 MMDWTDRHCRFFLRQLSRHALLYTEMVTTGALIH--GDRERFLRYSECEHPIALQLGGSN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA T++A + YDE+NLN GCPS +V + G LM P V + + + ++
Sbjct: 59 PQDLATCTKMAEEHGYDEVNLNVGCPSDRVQNN-MIGACLMGHPALVADCVKAMQDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP ENR +PPL+Y
Sbjct: 118 PVTVKHRIGINGRDSYAELCDFVGQVRD-AGCRSFTVHARIAILEGLSPKENREVPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L +DFPDL LNGGI T++E L + VM+GR AY NP Y L VD+ ++
Sbjct: 177 DVAAQLKQDFPDLEIILNGGIKTIEECEQHL-QSFDGVMLGREAYHNP-YLLAQVDSRLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G +G+TR + + + Y + L G + V + +L PG F++
Sbjct: 235 GTADTGITRMEALLALKPYVEQHLREGGT----LHHVSRHVLGLAQGFPGARRFRQ 286
>gi|56707647|ref|YP_169543.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670118|ref|YP_666675.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|134302420|ref|YP_001122390.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|254370162|ref|ZP_04986168.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254874464|ref|ZP_05247174.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716905|ref|YP_005305241.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725509|ref|YP_005317695.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|385794270|ref|YP_005830676.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|421752285|ref|ZP_16189314.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|421754150|ref|ZP_16191129.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|421755138|ref|ZP_16192091.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|421757875|ref|ZP_16194741.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|421759713|ref|ZP_16196540.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|424675033|ref|ZP_18111945.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
gi|56604139|emb|CAG45141.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320451|emb|CAL08524.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|134050197|gb|ABO47268.1| dihydrouridine synthase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568406|gb|EDN34060.1| tRNA dihydrouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254840463|gb|EET18899.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158805|gb|ADA78196.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|377826958|gb|AFB80206.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|377828582|gb|AFB78661.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085175|gb|EKM85324.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|409085450|gb|EKM85591.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|409089012|gb|EKM89067.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|409090092|gb|EKM90115.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|409091411|gb|EKM91409.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|417434288|gb|EKT89247.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
Length = 327
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 189/320 (59%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 8 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPKDFISCGKLAEELGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E+ L K VM+GR AY NP
Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHL-KYVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 297
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 298 YRRYLSENATKKEANVDTFL 317
>gi|374584018|ref|ZP_09657110.1| tRNA-U16,U17-dihydrouridine synthase [Leptonema illini DSM 21528]
gi|373872879|gb|EHQ04873.1| tRNA-U16,U17-dihydrouridine synthase [Leptonema illini DSM 21528]
Length = 353
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 191/341 (56%), Gaps = 22/341 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD HYR RL+S+H LYTEM+ I + GN +FL + P +HP+VLQ
Sbjct: 4 LSVAPMMDYTDRHYRFFLRLLSRHTTLYTEMVPDTAIRF--GNRHKFLRYDPCEHPVVLQ 61
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA++ + Y YD INLNCGCPS +V HG FG SLM DP V + +
Sbjct: 62 LGGSDSVALAESAAIGEEYGYDAINLNCGCPSERVE-HGNFGASLMTDPLHVRRIVEAMN 120
Query: 131 ANTNVPVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++PV+VK RIG+ + +SY++L F+ HFI+H+R A+L ++PA
Sbjct: 121 QAVSIPVTVKHRIGIRERSGVGRESYDELKQFVSACVD-GGVSHFIVHARIAILGKLNPA 179
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
+NR+IPPL+Y+ Y L +DFP+L +NGGI T+DE L K VM+GRAA P +
Sbjct: 180 QNRSIPPLQYDTVYRLKQDFPELFIEINGGIRTLDEAELHL-KHVDGVMIGRAACDTP-F 237
Query: 246 TLGHVDTAIYGA--PSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
D IYG P + + + VV Y L + V V++ + F+
Sbjct: 238 LFAEADHRIYGTQNPETAESEKAVVRALLPY----LHRQMDEGIPVHHVLRHAANLFYGR 293
Query: 304 PGNGLFKRK-ADAAF----QTCKTVKSFLEETIVAIPDSVL 339
PG LF+R+ A+ F T T+ +EE + IPD +
Sbjct: 294 PGARLFRRRLAEEIFIRRDWTTATIDEAIEELLSCIPDDAV 334
>gi|296444599|ref|ZP_06886563.1| TIM-barrel protein, yjbN family [Methylosinus trichosporium OB3b]
gi|296257867|gb|EFH04930.1| TIM-barrel protein, yjbN family [Methylosinus trichosporium OB3b]
Length = 351
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 169/295 (57%), Gaps = 10/295 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS APMMDWTD H R RL+S+ A LYTEML +I+ G+ R L F P + P+ LQ
Sbjct: 25 FSTAPMMDWTDRHCRFFHRLMSRRARLYTEMLTTGAVIF--GDRQRLLGFDPAERPLALQ 82
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKAT +A + YDEINLN GCPS +V +G FG LML P V + +S +
Sbjct: 83 LGGSDPLDLAKATRIAEPFGYDEINLNVGCPSDRVQ-NGAFGACLMLRPDLVADCVSAMK 141
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCRIGVDD D L +V + + ++H+RKA L G+SP ENR +
Sbjct: 142 DAVDLPVTVKCRIGVDDQDPRTALFALCERVVA-AGCDALVVHARKAWLAGLSPKENRDV 200
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L R FP L +NGGI T++++ A L VM+GRAAY NP L V
Sbjct: 201 PPLDYALVHELKRAFPTLPIAINGGIETIEQMRAQLEH-VDGVMIGRAAYHNPELLLA-V 258
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
D ++G P+ VE + Y +A L + + + +L F PG
Sbjct: 259 DPQLFGEPAPLPDGFAAVEAFIPYVEAQL----RRGERLASMTRHMLGLFAGRPG 309
>gi|302382184|ref|YP_003818007.1| hypothetical protein Bresu_1072 [Brevundimonas subvibrioides ATCC
15264]
gi|302192812|gb|ADL00384.1| TIM-barrel protein, yjbN family [Brevundimonas subvibrioides ATCC
15264]
Length = 341
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 189/346 (54%), Gaps = 24/346 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R +S A LYTEM+ A +++ G+ +R L F P +HP+ LQ
Sbjct: 9 LSVAPMMDWTDRHCRAFHRALSTRALLYTEMVTAPAVLH--GDRERLLGFDPVEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA+A + A YDEINLN GCPS +V G FG LM +P+ V + M+ I
Sbjct: 67 LGGSDPEQLAQAARIGAAMGYDEINLNVGCPSDRVQ-SGRFGACLMKEPELVADCMAAIK 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++P +VKCRIGVDD D L + +++ T FI+H+RKA L+G+SP ENR +
Sbjct: 126 GAVDIPATVKCRIGVDDQDPAVSLFATVDASAAVGVT-TFIVHARKAWLSGLSPKENRDV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK----GAHHVMVGRAAYQNPWYT 246
PPL Y L R+ P LT +NGGI ++D A L VM+GRAAY P
Sbjct: 185 PPLDYGLVRRLKRERPHLTICINGGIASLDAAEAHLDDTDGVALDGVMLGRAAYHEPAL- 243
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGT-YGNNRPHVRDVMKPLLHFFHSEPG 305
LG VD ++G + + VE+Y+ Y A L +G + + + +L H PG
Sbjct: 244 LGQVDRRLFGEGTGDVDPFAAVERYKPYLAARLSEGWG-----LHAMTRHMLGLMHGRPG 298
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGRE 351
F+R TV++ + + D LD+ + EA RE
Sbjct: 299 ARAFRR--------ILTVEAIRPGAGLEVVDRALDA-VREAEARRE 335
>gi|389809799|ref|ZP_10205496.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
gi|388441514|gb|EIL97783.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
Length = 327
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 175/304 (57%), Gaps = 13/304 (4%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R RL+S A LYTEM+ + ++ +G R L S ++HP+
Sbjct: 9 PWNLSVAPMMDWTDRHCRYFHRLLSPRARLYTEMVTSAALV--RGKQLRLLEHSQQEHPL 66
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS LA+A YDEINLN GCPS +V G FG LM +P V + +
Sbjct: 67 ALQLGGSEPHELAQAARFGAEAGYDEINLNVGCPSDRVQS-GRFGACLMREPALVADCVK 125
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VKCRIGVDD D+Y L F + + ++H+RKA L G+SP EN
Sbjct: 126 AMRDAVSVPVTVKCRIGVDDQDAYADLQQFTGLMLE-AGVGVLVVHARKAWLKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL YE Y L R+FP L +NGGI TV +V A L + VM+GRAAY +P Y L
Sbjct: 185 REVPPLDYERVYRLKREFPQLVVVINGGITTVAQVRAHLTR-LDGVMLGRAAYHDP-YLL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
++ A++G P R V+++ + Y +A L G H+ + LL + EPG
Sbjct: 243 AQLEHALHGEPLP--DRDSVLQRLRPYVEAELAR-GTALKHIS---RHLLGLYQGEPGAR 296
Query: 308 LFKR 311
F+R
Sbjct: 297 AFRR 300
>gi|342904813|ref|ZP_08726611.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
gi|341952690|gb|EGT79213.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
Length = 329
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|348618093|ref|ZP_08884625.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816605|emb|CCD29291.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 334
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 175/303 (57%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APMM WTD H R RL+++ AWLYTEM+A +++ + R LAF +HP+ LQ
Sbjct: 3 LCIAPMMGWTDRHCRYFHRLLTRRAWLYTEMVAVGALLHS--DAARHLAFDESEHPVALQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D LA + A YDEINLNCGCPS +V G FG +LM P V E + +
Sbjct: 61 LGGSNPDELADCAKRGEAAGYDEINLNCGCPSARVQ-RGVFGAALMAQPLRVAECVRAMR 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD + Y + DFI V+ + + FI+H+R A+L+G++P ENR++
Sbjct: 120 DAVSIPVTVKHRIGLDDIEEYAFVRDFIGTVAH-AGCQTFIVHARSAVLHGLNPKENRSV 178
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL+YE Y L RDFP L LNGG+ T+ +V R AH VM+GRAAY NPW G
Sbjct: 179 PPLRYEVAYRLKRDFPALEIILNGGVTTLAQVE---RHLAHIDGVMLGRAAYHNPWLLAG 235
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
+D Y A + R V+ + Y ++ V + +L +H PG
Sbjct: 236 -IDHRFYQANAPVAQRADVIPALKAY----YARESARGAPLKAVTRHILGLYHGVPGARR 290
Query: 309 FKR 311
++R
Sbjct: 291 WRR 293
>gi|154248170|ref|YP_001419128.1| tRNA-dihydrouridine synthase A [Xanthobacter autotrophicus Py2]
gi|154162255|gb|ABS69471.1| TIM-barrel protein, yjbN family [Xanthobacter autotrophicus Py2]
Length = 330
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/307 (41%), Positives = 174/307 (56%), Gaps = 10/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q P FSVAPMMDWTD H R R +S+ A LYTEM+ A I++ G+ R L FSPE+
Sbjct: 3 QSQPFRFSVAPMMDWTDRHCRAFHRTLSRRARLYTEMVTAPAILH--GDRARLLGFSPEE 60
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ +Q+GGS+ LA+A + Y YDEINLN GCPS +V G G FG LM +P V +
Sbjct: 61 HPVAVQLGGSDPAELAQAARICADYGYDEINLNVGCPSDRVQG-GNFGACLMREPDLVAD 119
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + A +PV+VKCRIGVDD D L D + + T I+H+RKA L G+SP
Sbjct: 120 CVAAMKAVVAIPVTVKCRIGVDDQDPEEAL-DRLADAVVAAGTDALIVHARKAWLKGLSP 178
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR IPPL Y+ L P + +NGGI ++ + R G +M+GRAAYQ+P
Sbjct: 179 RENRDIPPLDYDRVRRLKARLPHVPIAVNGGIASIAQGLEEAR-GLDGMMLGRAAYQDPE 237
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
LG VD ++G P+ VE ++ Y L G + D+ + +L F
Sbjct: 238 LLLG-VDPLLFGTPAPHADGFAAVEAFEPYVAHHLEAGGR----LSDITRHMLGLFTGRK 292
Query: 305 GNGLFKR 311
G +F+R
Sbjct: 293 GARIFRR 299
>gi|416159434|ref|ZP_11605894.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|433472729|ref|ZP_20430098.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|433481153|ref|ZP_20438424.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|433483264|ref|ZP_20440501.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|433485377|ref|ZP_20442582.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
gi|325128934|gb|EGC51788.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|432212168|gb|ELK68110.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|432218732|gb|ELK74585.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|432222834|gb|ELK78617.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|432224289|gb|ELK80055.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
Length = 336
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 169/274 (61%), Gaps = 6/274 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WL++EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLHSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T +E+ L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEEIAQHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQA 274
>gi|416026370|ref|ZP_11569819.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320329184|gb|EFW85181.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 339
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 185/329 (56%), Gaps = 17/329 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ KV + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCGSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++ + + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFDSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR-------KADAAFQTCKTVKSFLE 328
F++ KA+ +FLE
Sbjct: 309 RRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|385850602|ref|YP_005897117.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
gi|325205425|gb|ADZ00878.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
Length = 336
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG ++ + +V++ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTANPIGYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|148827810|ref|YP_001292563.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittGG]
gi|148719052|gb|ABR00180.1| hypothetical protein CGSHiGG_06425 [Haemophilus influenzae PittGG]
Length = 327
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKHCARLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAYEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|332709415|ref|ZP_08429376.1| tRNA dihydrouridine synthase A [Moorea producens 3L]
gi|332351674|gb|EGJ31253.1| tRNA dihydrouridine synthase A [Moorea producens 3L]
Length = 340
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 180/325 (55%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD HYR R I+ LYTEM+ + I++ G+ +R L FSP++ P+VLQ
Sbjct: 26 LSIAPMMDRTDRHYRYFMRQITGRTLLYTEMVTSAAILH--GDRERLLGFSPQEKPLVLQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG +LA+ +A A +YD+INLN GCPS +V +G FG LM P V + +
Sbjct: 84 VGGDTPSDLAECARIAEAMDYDQINLNVGCPSSRVQ-NGNFGACLMAQPDQVARCVEDMV 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD D Y + +F+ ++ S + +HF +H+RKA L G+SP ENR +
Sbjct: 143 KVVNIPVTVKHRIGIDDLDRYEDMANFV-RIVSEAGCQHFTVHARKAWLQGLSPKENRNV 201
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L ++ PDL +NGG ++++V RK VM+GRAAY NP Y
Sbjct: 202 PPLRYSDVHRLKQELPDLFVEINGGFTSLEQVREQ-RKYVDGVMIGRAAYDNP-YLFAKA 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IY TR QVVE Y D +G + + + +L F +PG+ +K
Sbjct: 260 DCDIYSDTVIPPTRHQVVEAMFSYIDHWVG----KGIKLNKITRHMLQLFAGQPGSRAWK 315
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R + E + IP
Sbjct: 316 RHLTENSCLVGVGSDVVREALAKIP 340
>gi|329296553|ref|ZP_08253889.1| TIM-barrel protein, yjbN family [Plautia stali symbiont]
Length = 331
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 173/303 (57%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R + LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLGGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPLALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPAALATCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP EN I
Sbjct: 126 DVVSIPVTVKTRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPKENSEI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T+DE A L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPALTVAINGGIKTLDEAKAHLQH-LDGVMMGREAYQNPG-ILAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G + VV Y + L GTY + + + +L F PG
Sbjct: 244 DRQLFGRETPVADPVAVVRSMYPYIEVELAQGTY------LGHITRHMLGLFQGIPGARQ 297
Query: 309 FKR 311
++R
Sbjct: 298 WRR 300
>gi|372275615|ref|ZP_09511651.1| tRNA-dihydrouridine synthase A [Pantoea sp. SL1_M5]
Length = 330
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 181/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEANLVADAVKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPQLTIALNGGVKTLEEALTHLQH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G +VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQTLFGRQHPAANPVEVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|345865559|ref|ZP_08817739.1| tRNA-dihydrouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123297|gb|EGW53197.1| tRNA-dihydrouridine synthase A [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 274
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 165/261 (63%), Gaps = 6/261 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD+TD +R ARLIS+H LYTEM+ +++ G+ +RFL F +HP+ +Q
Sbjct: 12 LSIAPMMDYTDRLFRYFARLISRHTLLYTEMITTGALLH--GDAERFLEFDISEHPVAIQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+A LA YDE+NLN GCPS +V +G G LM P+ V + + +
Sbjct: 70 LGGSNPAELAEAARLAETAGYDEVNLNVGCPSDRVQ-NGMIGACLMAHPELVADCVRAMK 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD+DSY L F+ + HFIIH+RKA L G+SP ENR +
Sbjct: 129 EAVSIPVTVKTRIGIDDNDSYAALQGFVAAQIG-AGCDHFIIHARKAWLQGLSPKENREV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L +DFP++ FT+NGGI T+ + L +G VM+GR AY NPW L
Sbjct: 188 PPLRYEIVQQLKQDFPEMGFTINGGIQTL-TLAEQLLQGLDGVMIGREAYHNPW-ILAEA 245
Query: 251 DTAIYGAPSSGLTRRQVVEKY 271
D IYG L+R QV+E++
Sbjct: 246 DRRIYGDNQPQLSRHQVLERF 266
>gi|89900729|ref|YP_523200.1| tRNA-dihydrouridine synthase A [Rhodoferax ferrireducens T118]
gi|89345466|gb|ABD69669.1| TIM-barrel protein, yjbN family [Rhodoferax ferrireducens T118]
Length = 331
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 183/308 (59%), Gaps = 12/308 (3%)
Query: 1 MVARQYLPP--W-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF 57
M++ + +PP W SVAPM+DWTD H R RL+++HA LYTEM+ +IY G++ R
Sbjct: 1 MLSPKPVPPDRWRLSVAPMLDWTDRHCRYFHRLLTQHALLYTEMVTTGALIY--GDVSRH 58
Query: 58 LAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML 117
L ++ ++HP+ LQ+GGS +LA+ +L + YDE+NLNCGCPS +V G FG LM
Sbjct: 59 LRYNEQEHPVALQLGGSEPADLARCAKLGEEWGYDEVNLNCGCPSERVQ-RGAFGACLMA 117
Query: 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA 177
+P+ V + + + +VPV+VK RIG+D +SY + DF+ VS + R FI+H+R A
Sbjct: 118 EPQLVADCVKAMVDVVSVPVTVKHRIGIDKTESYEFVRDFVGSVSE-AGCRTFIVHARNA 176
Query: 178 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237
L G+SP ENR +PPL+YE Y L RDFP L +NGGI + ++ L VM+GR
Sbjct: 177 WLKGLSPKENRDVPPLRYELAYQLKRDFPSLVIVINGGITSSAQIAGHLLH-LDGVMLGR 235
Query: 238 AAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLL 297
AY NPW+ L D +GA ++ TR QV ++ Y +G P + + +L
Sbjct: 236 EAYHNPWW-LASWDATFFGADATETTREQVEQQMCDYMTREAAEHGTPWP---TMARHML 291
Query: 298 HFFHSEPG 305
H PG
Sbjct: 292 GLRHGLPG 299
>gi|15676263|ref|NP_273397.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis MC58]
gi|385852538|ref|YP_005899052.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|416195227|ref|ZP_11617632.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|427827838|ref|ZP_18994861.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|433464325|ref|ZP_20421818.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|433487530|ref|ZP_20444708.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|433489705|ref|ZP_20446843.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|433504344|ref|ZP_20461288.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|433506438|ref|ZP_20463356.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|433508537|ref|ZP_20465421.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|433510601|ref|ZP_20467443.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
gi|7225569|gb|AAF40791.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984353|gb|EFV63327.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|325140997|gb|EGC63503.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|325199542|gb|ADY94997.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|389604991|emb|CCA43916.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha522]
gi|432205743|gb|ELK61764.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|432225803|gb|ELK81542.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|432230180|gb|ELK85858.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|432243241|gb|ELK98755.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|432244071|gb|ELK99572.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|432249561|gb|ELL04965.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|432250177|gb|ELL05574.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
Length = 336
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 180/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRHLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|440761201|ref|ZP_20940293.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
gi|436425131|gb|ELP22876.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
Length = 330
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 180/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAQTHLQH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQTLFGRQHPAANPVDVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|433468576|ref|ZP_20426012.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
gi|432206157|gb|ELK62169.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
Length = 336
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 168/274 (61%), Gaps = 6/274 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQA 274
>gi|304398443|ref|ZP_07380316.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
gi|304353948|gb|EFM18322.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
Length = 330
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 180/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA+S +HP+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGD---YLAYSEAEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDE+NLN GCPS +V +G FG LM + V +A+ +
Sbjct: 66 LGGSDPAALAQCAKLAEQRGYDEVNLNVGCPSDRVQ-NGRFGACLMAEANLVADAIKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 125 DVVSIPVTVKTRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT LNGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 185 PPLDYPRVYQLKRDFPHLTIALNGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G VV Y +A L GTY + V + +L F PG
Sbjct: 243 DQTLFGRQHPAANPVDVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 296
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 297 WRRHLSENAHKPGADVRVLEAALALVADKI 326
>gi|421562563|ref|ZP_16008389.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
gi|421907463|ref|ZP_16337339.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|393291421|emb|CCI73331.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|402342707|gb|EJU77865.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
Length = 336
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 ELPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVMLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V++ Y + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQTQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|326317525|ref|YP_004235197.1| yjbN family TIM-barrel protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374361|gb|ADX46630.1| TIM-barrel protein, yjbN family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 320
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 157/259 (60%), Gaps = 5/259 (1%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+S+HA LYTEM+ +++ GN++R L F+ E+HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVH--GNVERHLRFNAEEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + L + Y EINLNCGCPS +V G FG LM +P+ V + + + +V
Sbjct: 59 PADLAHSARLGERWGYGEINLNCGCPSERVQ-RGAFGACLMNEPRLVADCVKAMVDAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+ + Y + DF+ V+ + R FI+H+R A L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIGRSEEYAFVRDFVGTVAE-AGCRVFIVHARNAWLEGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ + L +FPDL +NGG+ T D V AL G M+GR AY NPW+ L D +
Sbjct: 177 DVVHRLKAEFPDLVIAINGGLATDDAVQEALGGGLDGAMIGREAYHNPWW-LARWDALYF 235
Query: 256 GAPSSGLTRRQVVEKYQIY 274
G +SGLTR E Y
Sbjct: 236 GDAASGLTREAAEEAMVDY 254
>gi|418287560|ref|ZP_12900144.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
gi|418289820|ref|ZP_12902053.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372202823|gb|EHP16590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372203638|gb|EHP17268.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
Length = 336
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 182/306 (59%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++AWLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG ++ + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTANPIGYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|187932026|ref|YP_001892011.1| tRNA-dihydrouridine synthase A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712935|gb|ACD31232.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 327
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 189/320 (59%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 8 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPKDFISCGKLAEELGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGIDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E+ L K VM+GR AY NP
Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQEIQQHL-KYVDSVMMGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 297
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 298 YRRYLSENATKKEAKVDTFL 317
>gi|421566775|ref|ZP_16012516.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
gi|402344718|gb|EJU79851.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
Length = 336
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 181/314 (57%), Gaps = 8/314 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V+ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKRKADAAF 317
G ++R A
Sbjct: 299 KGARTWRRMLSDAM 312
>gi|442319612|ref|YP_007359633.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
gi|441487254|gb|AGC43949.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
Length = 332
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 174/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPMMDWTD H R R IS+H LYTEML +++ G+ +R L + P +HP+ +Q
Sbjct: 9 LCVAPMMDWTDRHCRYFHRQISQHTLLYTEMLTTGAVLH--GDRERLLGYEPAEHPVAIQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS + LA++ +A A+ YDE+NLN GCPS +V G FG LM +P+ V ++ +
Sbjct: 67 LGGSEPEALAESARIAEAWGYDEVNLNVGCPSDRVQS-GRFGACLMAEPELVARLVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +PV+VK RI +D+ + + L F+ +++ TR FI+H+RKA L G+SP ENR +
Sbjct: 126 AAVRIPVTVKSRIAIDELEEWPTLERFVRLIAAEGCTR-FIVHARKAWLQGLSPKENRDV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE + L ++ P L ++NGGI T+D L K VM+GRA Y+NP Y L
Sbjct: 185 PPLRYELVHQLKQELPHLDISINGGIKTLDAAAEQLTK-VDGVMIGRAVYENP-YLLAEA 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D +G + R +VVE Y I + P + V + +L F PG ++
Sbjct: 243 DRRFFGVQEAPRARHEVVEAMLPY---IERSRQRGAP-LSSVTRHMLGLFQGLPGARAWR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|421539547|ref|ZP_15985707.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
gi|402321192|gb|EJU56668.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
Length = 336
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 180/308 (58%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V+ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|118497197|ref|YP_898247.1| tRNA-dihydrouridine synthase A [Francisella novicida U112]
gi|194323496|ref|ZP_03057273.1| RNA dihydrouridine synthase A [Francisella novicida FTE]
gi|118423103|gb|ABK89493.1| tRNA-dihydrouridine synthase [Francisella novicida U112]
gi|194322351|gb|EDX19832.1| RNA dihydrouridine synthase A [Francisella tularensis subsp.
novicida FTE]
Length = 327
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 188/320 (58%), Gaps = 13/320 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI++H LYTEM+ I++ GN + L ++P+++P+ LQ
Sbjct: 8 ICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILH--GNKEFLLKYNPQENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPKDFISCGKLAEELGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N N+P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLNIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGVDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y++ +DFP+L +NGGI T+ E L K VM+GR AY NP
Sbjct: 184 PELKYDVVYSIKKDFPNLELGINGGITTIQETQQHL-KYVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGL 308
D Y P++ ++ ++ K Y + +N P+++ ++ K L+ F+ P +
Sbjct: 242 DNIFYNQPTTNISALEIAYKMAEY----IKDQMDNDPYIKLNNITKHTLNLFNGLPNAKV 297
Query: 309 FKRK-ADAAFQTCKTVKSFL 327
++R ++ A + V +FL
Sbjct: 298 YRRYLSENATKKEANVDTFL 317
>gi|400754704|ref|YP_006563072.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis 2.10]
gi|398653857|gb|AFO87827.1| tRNA-dihydrouridine synthase A [Phaeobacter gallaeciensis 2.10]
Length = 343
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 151/250 (60%), Gaps = 4/250 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S LYTEM+ A ++ +G L SP++HP+ LQ
Sbjct: 24 LSVAPMMDWTDRHCRYLHRLLSHETLLYTEMVTAPALV--RGGALHLLDHSPQEHPVALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A E YDEINLNCGCPS +V G FG LM P V E ++ +
Sbjct: 82 LGGSDPAELAQAAEFGAEAGYDEINLNCGCPSDRVQS-GAFGAVLMKSPDLVAECVAAMQ 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +V V+VKCRIGVDD D L F+ ++++ R IH+RKA L G+SP ENR I
Sbjct: 141 AKVDVEVTVKCRIGVDDQDPQEVLPVFLERIAAAGCER-VTIHARKAWLKGLSPKENRDI 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE + + +FP L +LNGG+ ++DE L +G VM+GRAAY P L
Sbjct: 200 PPLDYEIVHQMKAEFPQLHISLNGGVASLDEALPHLERGLDGVMIGRAAYHQPSDILSQA 259
Query: 251 DTAIYGAPSS 260
D I+G S+
Sbjct: 260 DPLIFGTGSA 269
>gi|387890930|ref|YP_006321228.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|414595786|ref|ZP_11445397.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
gi|386925763|gb|AFJ48717.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|403193257|dbj|GAB83049.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
Length = 332
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 185/335 (55%), Gaps = 10/335 (2%)
Query: 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP 62
A + P FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA++
Sbjct: 7 ATAFAPLRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYNE 63
Query: 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122
E+HP+ LQ+GGS+ LA+ LA YDEINLN GCPS +V +G FG LM + V
Sbjct: 64 EEHPLALQLGGSDPRALAQCARLAEERGYDEINLNVGCPSDRVQ-NGRFGACLMGEADLV 122
Query: 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
+ ++ + VPV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+
Sbjct: 123 ADCVAAMREVVTVPVTVKTRIGIDDQDSYAFLCDFVGTVAQKGGCETFIIHARKAWLSGL 182
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242
SP ENR IPPL Y Y L RDFP LT +LNGGI ++ E A L VMVGR AYQN
Sbjct: 183 SPKENREIPPLDYPRVYQLKRDFPGLTMSLNGGIKSLAEARAHLEH-MDGVMVGREAYQN 241
Query: 243 PWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHS 302
P L VD I+G S VV Y + L + ++ + + +L F
Sbjct: 242 PG-MLAAVDRDIFGTTESCADPVAVVRAMYPYIEREL----SRGCYLGHITRHMLGLFQG 296
Query: 303 EPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
PG ++R LE+ + + D
Sbjct: 297 IPGARQWRRHLSENAHKAGADIRVLEQALALVADK 331
>gi|338973987|ref|ZP_08629349.1| tRNA dihydrouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
gi|338232714|gb|EGP07842.1| tRNA dihydrouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
Length = 330
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 173/304 (56%), Gaps = 16/304 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R RL+S+ A LYTEML +I+ G+ R L F +HP+ LQ
Sbjct: 7 FSVAPMMDWTDRHCRVFHRLLSRRARLYTEMLTTGAVIH--GDRQRLLGFDASEHPVALQ 64
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA++ + + YDEINLN GCPS +V G FG LM +P+ V + ++ +
Sbjct: 65 LGGSNPRDLAESARIGEGFGYDEINLNVGCPSDRVK-DGRFGACLMAEPRLVADCVAAMK 123
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VKCRIG+DD D L D + + + + ++H+RKA LNG+SP ENR I
Sbjct: 124 QAVKIPVTVKCRIGIDDQDPEVAL-DTLGRAVIAAGSDALVVHARKAWLNGLSPKENRDI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV---MVGRAAYQNPWYTL 247
PPL Y+ Y L P + +NGGI TV AA ++ HV M+GRAAY PW L
Sbjct: 183 PPLDYDRVYRLKAALPHVPVIINGGIPTV----AAAKEHLAHVDGAMLGRAAYHEPWRLL 238
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD ++G P+ T + +E Y + L R H + + L+ FH PG
Sbjct: 239 S-VDPELFGEPAPHATMHEAIEALMPYIERQLAA--GARLH--SITRHLVGAFHGVPGAR 293
Query: 308 LFKR 311
F+R
Sbjct: 294 AFRR 297
>gi|388257749|ref|ZP_10134928.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
gi|387938916|gb|EIK45468.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
Length = 346
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 185/303 (61%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F++APMM+W+ + RT R+++K A LY+EM+ +++ G+ RFL ++ +HP+ LQ
Sbjct: 24 FTLAPMMEWSTSDCRTFWRMLTKEAVLYSEMVTTGALLH--GDKKRFLDYNACEHPLALQ 81
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +A + YDE+NLNCGCPS +V +G G LM +P+ V + ++ +
Sbjct: 82 LGGSNPTDLAECARIAEDWGYDEVNLNCGCPSDRVQ-NGMIGACLMAEPELVADCIASMQ 140
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD + Y L F+ +++ + FI+H+RKA L G+SP ENR +
Sbjct: 141 HAVKIPVTVKHRIGIDDMEDYAGLVKFVSTIAA-TGCSTFIVHARKAWLKGLSPKENREV 199
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL+Y+ Y L +DFP L +NGGI T+++ L AH VM+GR AY NP Y L
Sbjct: 200 PPLQYDKVYQLKQDFPQLNIIINGGITTLEQTKTLL---AHVDGVMIGREAYSNP-YLLA 255
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD IYG+ + ++R +V+E+++ Y L G H + + +L + PG
Sbjct: 256 EVDQQIYGSSRTIISRDEVMEQFKEYCIEQLAK-GARLNH---LTRHILGLYQGLPGARQ 311
Query: 309 FKR 311
F+R
Sbjct: 312 FRR 314
>gi|224824837|ref|ZP_03697944.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
gi|224603330|gb|EEG09506.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
Length = 313
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 172/303 (56%), Gaps = 10/303 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD HYR AR I++H WLYTEM+ ++Y G++ R L + +HP+ LQ+GGS
Sbjct: 1 MLDWTDRHYRFFARQITRHTWLYTEMVTTGALLY--GDVARHLRYHECEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D LA+ LA + YDE+NLN GCPS +V G FG LM +P+ V + + + +
Sbjct: 59 PDELARCARLAEEWGYDEVNLNVGCPSERVQ-KGAFGACLMAEPQLVADCVKAMRDAVGI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VK RIG+D + Y + DF+ + + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 DVTVKHRIGIDAVEDYGYVRDFVGHIVE-AGCATFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+Y Y L RDFPD+ LNGG+ + DE+ L+ VMVGR AY NPW + D Y
Sbjct: 177 DYVYRLKRDFPDVEILLNGGVKSNDEIARHLQH-VDGVMVGREAYHNPW-LMADWDARFY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK-AD 314
+ TR VVE Y + L +R V + +L + PG ++R +D
Sbjct: 235 DDAHTEATRDAVVEAMLPYIEQRLAEPATQ---LRHVARHILGLYQGLPGARAWRRMLSD 291
Query: 315 AAF 317
AA
Sbjct: 292 AAL 294
>gi|339053234|ref|ZP_08647986.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721563|gb|EGG99595.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
Length = 351
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 174/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DW+D HYR RLIS+HA LY+EM+ II+ G+ D L F + P+ LQ
Sbjct: 37 LCIAPMLDWSDRHYRYFMRLISQHALLYSEMVTTGAIIH--GDRDHLLGFDNHEQPVALQ 94
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA+ +++ Y+EINLN GCPS +V +G FG LM P+ V + +
Sbjct: 95 LGGSSPSDLAECSKIGEDRGYNEINLNVGCPSDRVQ-NGAFGACLMAKPELVAACLESMQ 153
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+DD DSY L FI ++ S S FIIH+RKA L G+SP ENR I
Sbjct: 154 RAVNIPVTVKHRIGIDDLDSYELLQRFI-EIVSHSGCSTFIIHARKAFLQGLSPKENRDI 212
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY++ Y + FP L +NGGI ++ E L + VM+GR AY NP Y+L
Sbjct: 213 PPLKYDWVYQIKEQFPHLEIIINGGIKSLTESQKHLEQ-VDGVMIGREAYHNP-YSLAQA 270
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ +R +++++ Y + L + + K +L FH +PG F+
Sbjct: 271 DAQLFDDHHQIASRHDILQQFLPYIEQQL----TQDVRLTHISKHILGLFHGQPGGRKFR 326
Query: 311 R 311
+
Sbjct: 327 Q 327
>gi|260583380|ref|ZP_05851150.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
gi|260093566|gb|EEW77484.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
Length = 327
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYTRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVRSMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|378769115|ref|YP_005197590.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
gi|365188603|emb|CCF11553.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
Length = 331
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 181/330 (54%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R ++ LYTEM+ II+ +G+ +LA++ ++HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGD---YLAYNEQEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA + YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPVALAQCAALAEQHGYDEVNLNVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVDIPVTVKTRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPQLTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G + VV Y +A L GTY + V + +L F PG
Sbjct: 244 DRELFGRDRPAVDPVAVVRAMYPYIEAELSKGTY------LGHVTRHMLGLFQGIPGARQ 297
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 298 WRRHLSENAHKPGADVRVLEAALALVADKI 327
>gi|145548359|ref|XP_001459860.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427687|emb|CAK92463.1| unnamed protein product [Paramecium tetraurelia]
Length = 346
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 180/307 (58%), Gaps = 17/307 (5%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-------FSPEQ 64
S+APM+D T H+R RL++K+ LYTEM+ I NL R L +S +
Sbjct: 10 SIAPMIDITYEHFRVFFRLLTKNCVLYTEMIHENAI-----NLSRVLKPFPLVLDYSQVE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+V Q+GG++ + LAKA ++A +DEINLN GCPS +V G FG LM +P V +
Sbjct: 65 HPVVCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQD-GAFGACLMKEPHLVAQ 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
M + +P ++KCR+GVD+ DSY + +F+ V HFI+H+RKA L G++P
Sbjct: 124 CMKKMKEAVKIPCTLKCRLGVDNLDSYEFVRNFVEIVYKEGEVNHFIMHARKAFLKGLNP 183
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENRT+PPLKY++ Y L ++FP++ FTLNGGI + ++ L +M+GR+A++NPW
Sbjct: 184 HENRTVPPLKYDWVYQLKKEFPEIKFTLNGGIKCTEHIDQVL-PNVDGIMIGRSAHENPW 242
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
D YG + R++++E+Y + + T + + +KP+++ F+ E
Sbjct: 243 -MFSDFDRLYYGGENQNYNRKEILEQYAEFVEEKRAT--GCKVSTQMCVKPIINLFNGES 299
Query: 305 GNGLFKR 311
N +++
Sbjct: 300 NNKRYRQ 306
>gi|406678525|ref|ZP_11085700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
gi|404621638|gb|EKB18504.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
Length = 328
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQINAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|304386595|ref|ZP_07368883.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
gi|304339424|gb|EFM05496.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
Length = 348
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 177/301 (58%), Gaps = 7/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPM+DWTD HYR +AR I+++AWLY+EM+ A I+Y G+ DRFL F+ + P+ LQ
Sbjct: 25 LCVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQPVALQ 82
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 83 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADCLNAMQ 141
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP ENR +
Sbjct: 142 DAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDV 201
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L ++FP+L +NGGI T +E A + VMVGR AY NP +
Sbjct: 202 PPLKYDYVYRLKQEFPELEIIINGGI-TANEAIAGHLQHVDGVMVGREAYHNP-IVMREW 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG S + +V++ Y A + +R +++ L H G ++
Sbjct: 260 DRLFYGDTRSPIEYTDLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKGARTWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|423205254|ref|ZP_17191810.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
gi|404624337|gb|EKB21172.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
Length = 328
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNNAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|419798034|ref|ZP_14323477.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
gi|385696375|gb|EIG26864.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
Length = 337
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 6/272 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ + I+Y G+ DRFL F+ +
Sbjct: 6 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVY--GDKDRFLMFNEGEQ 63
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 64 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVMLVADC 122
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 123 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 ENRDVPPLKYDYVYRLKKEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 241 VMHEWDRLFYGDTRSPIEYADLVQRLYTYSQA 272
>gi|417844182|ref|ZP_12490243.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
gi|341947567|gb|EGT74214.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
Length = 329
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A +II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPSIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPYLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQHCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALSFVE 326
>gi|425069696|ref|ZP_18472811.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
gi|404596272|gb|EKA96793.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
Length = 344
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 157/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++K+ LYTEM+ II+ +G+ +L +S E+HPI LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGD---YLKYSNEEHPISLQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS + FIIH+RKA L+G+SP ENR +
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDF LT +NGGI +++E L K VMVGR AYQNP L HV
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHV 261
Query: 251 DTAIY 255
D ++
Sbjct: 262 DHVLF 266
>gi|304313001|ref|YP_003812599.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
gi|301798734|emb|CBL46967.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
Length = 357
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 174/303 (57%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R + R IS+ LYTEM+ +++ N R+L + ++HP+ LQ
Sbjct: 42 LSVAPMLDWTDRHARYMLRQISQRTLLYTEMVTTGALLHT--NPARWLDYHHDEHPLALQ 99
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG+ LA+ +LA + YDE+NLN GCPS +V G FG LM P V + + +
Sbjct: 100 LGGNQPHALAQCVKLAAQWQYDEVNLNVGCPSDRVQ-EGAFGACLMATPNIVADCVKAMQ 158
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+N+P++VKCRIG+DD D L DFI V + + + FI+H+RKA L G+SP ENR I
Sbjct: 159 DASNLPITVKCRIGIDDQDEEQGLQDFIETVQA-AGCKTFIVHARKAWLKGLSPKENREI 217
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y + L +DFPDL +NGG T+DE L AH VM+GR AY NP L
Sbjct: 218 PPLNYPRVHRLKKDFPDLELIINGGFKTLDECAEQL---AHLDGVMIGREAYHNP-MVLA 273
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+GA ++ + R ++ K Y + Y + V+ + + +L H PG
Sbjct: 274 DADQRIFGATNAPICREALIHKMHAYAER---QYRDGVA-VKHITRHMLGLLHGIPGGRR 329
Query: 309 FKR 311
++R
Sbjct: 330 WRR 332
>gi|416015788|ref|ZP_11563254.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320324818|gb|EFW80890.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
Length = 339
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 184/329 (55%), Gaps = 17/329 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPGLVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ KV + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCGSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++ + + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFDSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR-------KADAAFQTCKTVKSFLE 328
F++ KA+ +FLE
Sbjct: 309 RRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|227357643|ref|ZP_03841996.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
gi|227162353|gb|EEI47357.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
Length = 344
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 157/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++K+ LYTEM+ II+ +G+ +L +S E+HPI LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGD---YLKYSNEEHPISLQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS + FIIH+RKA L+G+SP ENR +
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDF LT +NGGI +++E L K VMVGR AYQNP L HV
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHV 261
Query: 251 DTAIY 255
D ++
Sbjct: 262 DHVLF 266
>gi|409407337|ref|ZP_11255788.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
gi|386433088|gb|EIJ45914.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
Length = 329
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 175/300 (58%), Gaps = 10/300 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R I++H WLYTEM+ +++ G++ R L F ++HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFDEQEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + L + YDEINLNCGCPS +V G FG LM +P V + + + ++
Sbjct: 59 PADLAHSARLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMGEPALVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VK RIG+DD SY+ + DF+ +++ + + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 DVTVKHRIGIDDVQSYDFVRDFVGQIAE-AGCKTFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y Y L +DFPDL +NGGI T+ E++ LR VM+GR AY NP Y + D Y
Sbjct: 177 HYAYQLKQDFPDLEILINGGIKTLPEIDEHLRH-VDGVMLGREAYHNP-YLMASFDARYY 234
Query: 256 GAPSSGL--TRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 311
G G +R +V+ Y L +G+N +R + + +L PG F++
Sbjct: 235 GELPGGRQPSRAEVIAAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQ 294
>gi|378581909|ref|ZP_09830549.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
gi|377815224|gb|EHT98339.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
Length = 331
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 182/330 (55%), Gaps = 14/330 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++ LYTEM+ II+ +G+ +LAFS E+HP+ LQ
Sbjct: 10 FSVAPMLDWTDRHCRYFHRLLTGDTLLYTEMVTTGAIIHGKGD---YLAFSEEEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ LA +YDE+NLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPAALAQCAALAEQRDYDEVNLNVGCPSDRVQ-NGRFGACLMAEAGLVADGIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L DFI V+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVDIPVTVKTRIGIDEQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L+ VM+GR AYQNP L HV
Sbjct: 186 PPLDYPRVYQLKRDFPQLTIAINGGVKTLEEAKTHLQH-LDGVMMGREAYQNPG-ILAHV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G VV Y +A L GTY + V + +L F PG
Sbjct: 244 DREVFGREQPAADPVAVVRAMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 297
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDSV 338
++R LE + + D +
Sbjct: 298 WRRHLSENAHKPGADVRVLEAALALVADKI 327
>gi|330828271|ref|YP_004391223.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
gi|328803407|gb|AEB48606.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
Length = 328
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPELTIALNGGVTSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNNAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|145629754|ref|ZP_01785549.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|145632012|ref|ZP_01787761.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|144977993|gb|EDJ87777.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|144982331|gb|EDJ89920.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
Length = 327
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 183/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCARLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 GVVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>gi|427419226|ref|ZP_18909409.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
gi|425761939|gb|EKV02792.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
Length = 341
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 181/307 (58%), Gaps = 12/307 (3%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
Q L P SVAPMMD TD H+R R I++ LYTEM+ A+ I++ G+ + L F P +
Sbjct: 8 QRLHP-LSVAPMMDRTDRHFRYFMRQITQKTLLYTEMITAQAILH--GDRTKLLGFDPLE 64
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
P+ LQIGG + LAK ++A YDE+NLN GCPS +V G FG LM P+ V +
Sbjct: 65 KPLSLQIGGDDPQLLAKCAQIAEDMGYDEVNLNVGCPSNRVQS-GNFGACLMSQPELVAD 123
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
++ + A ++PV+VK RIG+DD D Y + F+ V++ R F +H+RKA L G+SP
Sbjct: 124 CVAAMQAVVDIPVTVKHRIGIDDCDRYEDMVRFVTTVTAAGCHR-FTVHARKAWLQGLSP 182
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
+NRTIPPL+Y+ Y L ++ P+L +NGGI T++E + L++ VM+GRAAY P
Sbjct: 183 KDNRTIPPLRYDDVYRLKQEHPELWIEINGGIKTLEEADTHLQQ-VDAVMIGRAAYDTP- 240
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y D IY A ++ LTR Q+V Y + + + + + +L FH +P
Sbjct: 241 YLFAVADRDIYAA-NAPLTRHQIVAAMLPY----IARWTEQGTKLHSITRHMLQLFHGQP 295
Query: 305 GNGLFKR 311
G+ +KR
Sbjct: 296 GSRAWKR 302
>gi|115372138|ref|ZP_01459449.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
gi|115370840|gb|EAU69764.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 170/295 (57%), Gaps = 10/295 (3%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R R +S+H LYTEML +++ G+ DR L F P +HP+ LQ+GGS
Sbjct: 1 MDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLH--GDRDRLLGFEPAEHPVALQLGGSEP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA+A + A+ YDEINLN GCPS +V G FG LM +P+ V ++ + +P
Sbjct: 59 AALAEAARIGEAWGYDEINLNVGCPSDRVQS-GRFGACLMAEPELVARLVAAMREAVRIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RI +DD + + L F+ +S+ +R FI+H+RKA L G+SP ENR IPPL+YE
Sbjct: 118 VTVKSRIAIDDMEEWPTLERFVRLISAEGCSR-FIVHARKAWLQGLSPKENRDIPPLRYE 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y L +FP L ++NGGI T++ LR VM+GRAAY+NP Y L D+ ++G
Sbjct: 177 LVYRLKAEFPSLDISINGGIKTLEAAAEHLRH-VDGVMIGRAAYENP-YLLAEADSRLFG 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
A + R VVE Y +A P + + + +L F PG ++R
Sbjct: 235 ASEAPRDRHDVVEAMLPYMEA---RRSQGAP-LNAITRHMLGLFQGLPGARAWRR 285
>gi|217978983|ref|YP_002363130.1| yjbN family TIM-barrel protein [Methylocella silvestris BL2]
gi|217504359|gb|ACK51768.1| TIM-barrel protein, yjbN family [Methylocella silvestris BL2]
Length = 335
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 178/310 (57%), Gaps = 14/310 (4%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
+QY FSVAPMMDWTD H R+ RL+++ A LYTEM+ +++ G DR L F
Sbjct: 2 KQYQAYRFSVAPMMDWTDRHCRSFHRLLTRRARLYTEMVTTGAVLH--GQRDRLLGFDAA 59
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ Q+GGS+ +LA A + + YDEINLN GCPS +V +G FG LM +P+ VG
Sbjct: 60 EHPLAAQLGGSDPADLAAAARICADFGYDEINLNAGCPSKRVQ-NGAFGACLMREPELVG 118
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + A + PV+VKCRIGVD+ + L F V + I+H+RKA L G+S
Sbjct: 119 DCVAAMKAAVSAPVTVKCRIGVDEQEPREALFAFAETVLG-AGADALIVHARKAWLEGLS 177
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P +NR IPPL Y + L R FPD +NGG++T+D + A L VM+GRAAYQ+P
Sbjct: 178 PKDNRHIPPLDYALVHELKRRFPDTPIAINGGLDTIDAMRAQLDH-VDGVMIGRAAYQDP 236
Query: 244 WYTLGHVDTAIYG--APSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
L VD +G AP S + Q +E + Y I P + +++ LL F+
Sbjct: 237 ALLL-EVDPVFFGEDAPFSEMA--QAIEAFTPY---IAARLTEGVP-LNAMVRHLLGAFN 289
Query: 302 SEPGNGLFKR 311
PG F+R
Sbjct: 290 GRPGARAFRR 299
>gi|380510524|ref|ZP_09853931.1| tRNA-dihydrouridine synthase A [Xanthomonas sacchari NCPPB 4393]
Length = 339
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 175/306 (57%), Gaps = 22/306 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A ++ G+ R L F +HP+ LQ
Sbjct: 20 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVVL--GDRARLLDFDAAEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A + + YDEINLNCGCPS +V G FG LM +P V E ++ +
Sbjct: 78 LGGSEPALLAQAARIGQDWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVAECVAAMV 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VKCR+GVD D Y F+ +V++ + F++H+R A L G+SP ENR +
Sbjct: 137 EAVDIPVTVKCRLGVDQDDDYAVFLAFVDQVAA-AGCELFVVHARNAWLQGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ + L R+ P L LNGG+ V+ A L + VM+GRAAY +P Y L +
Sbjct: 196 PPLRYDWAHRLKRERPQLQVVLNGGLAAVETAQAQL-QAVDGVMLGRAAYHDP-YVLHRL 253
Query: 251 DTAIYGA---PSSGLTR--RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
D A+ GA P + L R R VE G A+ + + + LL FH +PG
Sbjct: 254 DAALTGAALRPRAELLRALRPYVEARLAEGLAL-----------KHITRHLLGLFHGQPG 302
Query: 306 NGLFKR 311
F++
Sbjct: 303 GRAFRQ 308
>gi|145639381|ref|ZP_01794986.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
gi|145271428|gb|EDK11340.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
Length = 327
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L DFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKHDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALSFVE 326
>gi|337755755|ref|YP_004648266.1| tRNA-dihydrouridine synthase A [Francisella sp. TX077308]
gi|336447360|gb|AEI36666.1| tRNA-dihydrouridine synthase A [Francisella sp. TX077308]
Length = 324
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 188/319 (58%), Gaps = 13/319 (4%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM+DWTD HYR + RLI+KH LYTEM+ II+ GN D L ++PE++PI LQ+G
Sbjct: 10 IAPMLDWTDKHYRYMMRLITKHTMLYTEMITLNAIIH--GNKDFLLKYNPEENPITLQLG 67
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
G ++ +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + + N
Sbjct: 68 GCVPEDFITCGKLAQNLGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMKDN 126
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
++P+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTIP
Sbjct: 127 LDIPISVKCRIGYDHNDSYEELYNFVDKQVQ-AGADYLCIHARKGWLSGLSPKENRTIPE 185
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
LKY Y + +DFP+L +NGGI T+++ L K VM+GR AY NP + D
Sbjct: 186 LKYSTVYNIKKDFPNLELGINGGITTIEDTQEHL-KHVDSVMIGREAYHNPM-LFKNFDN 243
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFK 310
Y + ++ +V K Y L +N P++R ++ K L+ F+ P +F+
Sbjct: 244 LFYNQHINDISPLEVAYKMAEYIKIKL----DNDPNMRLNNITKHTLNLFNGLPNAKVFR 299
Query: 311 RK-ADAAFQTCKTVKSFLE 328
R ++ A + V +FL+
Sbjct: 300 RYLSENATKKDANVDTFLK 318
>gi|428309830|ref|YP_007120807.1| tRNA-U16,U17-dihydrouridine synthase [Microcoleus sp. PCC 7113]
gi|428251442|gb|AFZ17401.1| tRNA-U16,U17-dihydrouridine synthase [Microcoleus sp. PCC 7113]
Length = 349
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R R I++ LYTEM+ + I++ G+ + L FSPE+ P+ LQ
Sbjct: 26 LSVAPMMDRTDRHFRYFMRQITQRTLLYTEMVTSAAILH--GDKEHLLGFSPEEKPLALQ 83
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N + LA+ +A YDEINLN GCPS +V +G FG LM P+ V +A+ +
Sbjct: 84 VGGDNSEELAECARIAENMGYDEINLNVGCPSDRVQ-NGNFGACLMAQPERVAKAVEAMI 142
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+PV+VK RIG+D+ D Y + +F+ VS R F +H+RKA L G+SP ENR I
Sbjct: 143 EAVNIPVTVKHRIGIDECDRYEDMVNFVRIVSDAGCQR-FTVHARKAWLQGLSPKENRDI 201
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L ++FP L +NGG + +V L K VM+GRAAY NP Y
Sbjct: 202 PPLRYGDVHRLKQEFPHLFVEINGGFTNLQQVKEQL-KLVDAVMIGRAAYDNP-YLFATA 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ IYG + LTR +V E Y D + + + + +L F +PG+ +K
Sbjct: 260 DSEIYGEEGTPLTRHEVAEVMCSYIDLWVA----KGLKLNKITRHMLQLFSGQPGSRAWK 315
Query: 311 R 311
R
Sbjct: 316 R 316
>gi|425071149|ref|ZP_18474255.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
gi|404599974|gb|EKB00427.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
Length = 344
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 157/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++K+ LYTEM+ II+ +G+ +L +S E+HPI LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGD---YLKYSNEEHPISLQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS + FIIH+RKA L+G+SP ENR +
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDF LT +NGGI +++E L K VMVGR AYQNP L HV
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHV 261
Query: 251 DTAIY 255
D ++
Sbjct: 262 DHVLF 266
>gi|148826732|ref|YP_001291485.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229847414|ref|ZP_04467514.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|148716892|gb|ABQ99102.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229809652|gb|EEP45378.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|309751771|gb|ADO81755.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2866]
Length = 327
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 184/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+S ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSAKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L N H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----NQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVIETALSFVE 326
>gi|433536002|ref|ZP_20492520.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
gi|432276248|gb|ELL31309.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
Length = 336
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 180/308 (58%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V+ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|197286568|ref|YP_002152440.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
gi|194684055|emb|CAR45390.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
Length = 344
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 157/245 (64%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R R ++K+ LYTEM+ II+ +G+ +L +S E+HPI LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGD---YLKYSNEEHPISLQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 85 LGGSDPQALAQCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCVKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LCDFI VS + FIIH+RKA L+G+SP ENR +
Sbjct: 144 DVVDIPVTVKTRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDF LT +NGGI +++E L K VMVGR AYQNP L HV
Sbjct: 204 PPLDYPRVYQLKRDFSHLTMAINGGIKSLEEAQEHL-KYMDGVMVGREAYQNP-SILAHV 261
Query: 251 DTAIY 255
D ++
Sbjct: 262 DHVLF 266
>gi|114799763|ref|YP_759023.1| tRNA-dihydrouridine synthase A [Hyphomonas neptunium ATCC 15444]
gi|114739937|gb|ABI78062.1| tRNA-dihydrouridine synthase A [Hyphomonas neptunium ATCC 15444]
Length = 328
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 173/301 (57%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R ++K A L+TEM+ A+ +I+ G+ R + FS +HP+VLQ
Sbjct: 9 FSVAPMMDWTDRHCRAFHRTLTKRALLWTEMVTADAVIH--GDRQRLIGFSDVEHPLVLQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA+A +A Y YDE+NLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 67 LGGSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQ-SGAFGACLMAEPDLVADCVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RI +DD + L FI KV S++ F +H+RKA L G+SP ENR +
Sbjct: 126 AAVSIPVTVKNRIAIDDLPARETLFTFIEKV-SVAGCSVFTVHARKAWLKGLSPKENREV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y L PDLT LNGGI T+D+ + VM+GRAAYQ P LG V
Sbjct: 185 PPLDYGLVAELKTARPDLTIILNGGIATIDQCRDHIGV-FDGVMLGRAAYQTPGL-LGQV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++G + + V Y+ Y A L N R +L F +PG ++
Sbjct: 243 DSDLFG-EGAMIAAGDAVRAYEPYIAARLAEGSNLHAMTRH----MLGLFAGQPGARQWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|284929214|ref|YP_003421736.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
gi|284809658|gb|ADB95355.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
Length = 324
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 185/302 (61%), Gaps = 10/302 (3%)
Query: 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69
+ SVAPMMD TD H+R R I+KH LYTEM++A + Q GN + L FS ++ P+ L
Sbjct: 8 FLSVAPMMDRTDRHFRYFIRQITKHTLLYTEMISATAV--QNGNKSKLLDFSSDEKPLSL 65
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
Q+GG++ LA+ +A + YDE+NLN GCPS +V +G FG LM +P+ V +++ +
Sbjct: 66 QLGGNDPYTLAECAIIAEDWGYDEVNLNIGCPSDRVQ-NGRFGACLMAEPELVAKSVEKM 124
Query: 130 AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
+ ++P++VK RIG+D+ D Y L F+ ++ S S + FI+H+RKA L G+SP ENR
Sbjct: 125 QESVDIPITVKHRIGIDECDDYESLKYFV-RIVSESGCKKFIVHARKAWLQGLSPKENRN 183
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
IPPL+Y+ Y+L +DFP LT +NGGI +++++ L + VM+GR AY NP Y L
Sbjct: 184 IPPLRYQDVYSLKKDFPHLTIEINGGITNLEQISHHL-QFIDSVMLGRIAYNNP-YLLAT 241
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
VD Y + ++ LTR Q++E Y + + ++ + + + LL F G +
Sbjct: 242 VDKDFYKSSTTPLTRYQIIENILPY----VEYWASHGLKLHSITRHLLSLFIGISGTKEW 297
Query: 310 KR 311
KR
Sbjct: 298 KR 299
>gi|340363631|ref|ZP_08685954.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
gi|339885310|gb|EGQ75039.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
Length = 337
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 6/272 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ + I+Y G+ DRFL F+ +
Sbjct: 9 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVY--GDKDRFLMFNEGEQ 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 67 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVMLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 126 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 186 ENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 244 VMHEWDRLFYGDTRSPIEYADLVQRLYTYSQA 275
>gi|145300509|ref|YP_001143350.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853281|gb|ABO91602.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 331
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++ P+ LQ
Sbjct: 9 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQERPVSLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V + + +
Sbjct: 66 LGGSNPADLAHCAKLARERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 125 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRD-AGCDTFIVHARKAWLSGLSPRENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+ ++++ L++ VM+GR AYQNP Y L V
Sbjct: 184 PPLDYPRVYRVKQDYPELTIALNGGVTSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAQV 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++G S +R +VV Y + L GN H + + +L F + G ++
Sbjct: 242 DSQLFGLASEIPSRHEVVRMMLPYMEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|91788026|ref|YP_548978.1| tRNA-dihydrouridine synthase A [Polaromonas sp. JS666]
gi|91697251|gb|ABE44080.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas sp. JS666]
Length = 344
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 160/260 (61%), Gaps = 7/260 (2%)
Query: 9 PW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
PW SVAPMMDWTD H R RL+S HA LYTEM+ +I+ G++ R L F E+HP+
Sbjct: 23 PWRLSVAPMMDWTDRHCRHFHRLLSGHALLYTEMVTTGALIH--GDVARHLRFGVEEHPV 80
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS LA+ L + YDEINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 81 ALQLGGSEPAELAQCATLGEQWGYDEINLNCGCPSERVQ-RGSFGACLMAEPQLVADCVK 139
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIG+D +SY + DF+ VS + FI+H+R A L G+SP EN
Sbjct: 140 AMVDVVSVPVTVKHRIGIDKGESYGFVRDFVGAVSEAGCST-FIVHARNAWLKGLSPKEN 198
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+YE + L +FP LT +NGGI T +V L++ VM+GR AY NPW+ L
Sbjct: 199 REVPPLRYELVHRLKAEFPQLTIAINGGITTSTQVAEQLQQ-LDGVMIGREAYHNPWW-L 256
Query: 248 GHVDTAIYGAPSSGLTRRQV 267
D A YG +G TR V
Sbjct: 257 SVWDAAFYGVADAGRTRESV 276
>gi|418362882|ref|ZP_12963500.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|356685888|gb|EHI50507.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 328
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++ P+ LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQERPVSLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLAHCAKLARERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQTFIEQVRD-AGCDTFIVHARKAWLSGLSPRENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P+LT LNGG+ ++++ L++ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPELTIALNGGVTSLEQTLEHLQQ-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ ++G S +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DSQLFGLASEIPSRHEVVRMMLPYMEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|72383178|ref|YP_292533.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str.
NATL2A]
gi|72003028|gb|AAZ58830.1| tRNA-U16,U17-dihydrouridine synthase [Prochlorococcus marinus str.
NATL2A]
Length = 335
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 191/329 (58%), Gaps = 13/329 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R L R I+K + LYTEM+ A+ + Y + N ++ L F +HPI +Q
Sbjct: 16 LSIAPMMDCTDRHFRVLMRQITKKSLLYTEMIVAQALHYSK-NRNKLLDFDEIEHPISIQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+A ++A + YDEINLN GCPSPKV G FG LM P V + +
Sbjct: 75 LGGDNPKLLAEAAQMAEDWGYDEINLNIGCPSPKVKS-GNFGACLMGKPNIVASCIEKMK 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+P++VK R+G+D+ DS + L F+ SL+ FI+H+RKA LNG++P ENR+I
Sbjct: 134 KTCNIPITVKHRLGIDNLDSDDYLLKFV-DTCSLAGADRFIVHARKAWLNGLNPKENRSI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQNPWYTLG 248
PPL+YE L + P+L LNGGINT+++ AL+ GA MVGRAAY +P +
Sbjct: 193 PPLQYERVQNLKNNRPELIIELNGGINTINDSIEALKVFDGA---MVGRAAYSHP-FLWT 248
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
+D+ I+G L+R ++++K + L G + + + +L+ + P +
Sbjct: 249 KIDSLIFGQKEKYLSRSKIIKKLIPFAQKHLENGG----RLWQISRHILNLIENIPNAKI 304
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAIPDS 337
+++ QT K S L++ + D+
Sbjct: 305 LRQELSEKCQTQKADISILKKIAQQLEDA 333
>gi|405379232|ref|ZP_11033132.1| tRNA dihydrouridine synthase A [Rhizobium sp. CF142]
gi|397324246|gb|EJJ28611.1| tRNA dihydrouridine synthase A [Rhizobium sp. CF142]
Length = 345
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 180/310 (58%), Gaps = 14/310 (4%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R + P F+VAPM+DWTD H R R IS++A LYTEM+ A+ II+ G +R L+F
Sbjct: 14 RYFKAPVFAVAPMIDWTDRHCRYFHRQISRNALLYTEMVVADAIIH--GPRERLLSFDGT 71
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ LA+A +A Y YDEINLN GCPS +V G FG LML P+ V
Sbjct: 72 EHPVALQLGGSDPAKLAEAVRIAGPYGYDEINLNVGCPSDRVQS-GTFGACLMLTPETVA 130
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
++ + VPV+VKCRIGVD+ + L + +V + IH+RKA L G+S
Sbjct: 131 GCIAAMKKVAKVPVTVKCRIGVDEQEPEEALPTLMTRVLD-AGADAIWIHARKAWLKGLS 189
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ 241
P ENR IPPL YE Y + FPD+ +NGGI+T+DE A L AH VM+GRAAYQ
Sbjct: 190 PKENREIPPLDYEIVYRMKARFPDVFIGINGGIHTLDEARAHL---AHVDGVMLGRAAYQ 246
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
N L VD YGAP+S + ++ Y + + + G ++ + + ++ F
Sbjct: 247 NA-AILSEVDQRFYGAPASEPDWDDLRDRMMAYAERHIASGGR----LQHIARHMVGLFT 301
Query: 302 SEPGNGLFKR 311
PG +++
Sbjct: 302 GLPGARRYRQ 311
>gi|349610782|ref|ZP_08890109.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
gi|348615781|gb|EGY65291.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
Length = 340
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 6/272 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ + I+Y G+ DRFL F+ +
Sbjct: 9 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVY--GDKDRFLMFNEGEQ 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 67 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVMLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 126 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 186 ENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 277
+ D YG S + +V++ Y A
Sbjct: 244 VMHEWDRLFYGDTRSPIEYADLVQRLYTYSQA 275
>gi|146282034|ref|YP_001172187.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri A1501]
gi|145570239|gb|ABP79345.1| TIM-barrel protein, yjbN family [Pseudomonas stutzeri A1501]
Length = 334
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 177/305 (58%), Gaps = 10/305 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD H R R +SKHA LYTEM+ +++ G+ RFL + +HP
Sbjct: 14 LSRRFSVAPMMDWTDRHCRFFLRQLSKHALLYTEMVTTGALLH--GDTARFLRYDESEHP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA +LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 72 LALQLGGSVPGDLAACAKLAEVAGYDEVNLNVGCPSDRVQNN-MIGACLMGHPQLVADCV 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ V V+VK RIG++ DSY+QLCDF+ +V + R F +H+R A+L G+SP +
Sbjct: 131 KAMRDAVGVEVTVKHRIGINGRDSYSQLCDFVGQVRE-AGCRSFTVHARIAILEGLSPKQ 189
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR +PPL+Y+ L RDFPDL LNGGI T++E L+ VM+GR AY NP Y
Sbjct: 190 NREVPPLRYDVAAQLKRDFPDLEIILNGGIKTLEECREHLQT-FDGVMLGREAYHNP-YL 247
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD++++G + ++R Q + + Y + L G + V + +L PG
Sbjct: 248 LAQVDSSLFGNNAPVISRAQALRNMRPYIERHLAEGGA----MHHVTRHVLGLGQGFPGA 303
Query: 307 GLFKR 311
F++
Sbjct: 304 RRFRQ 308
>gi|422632556|ref|ZP_16697722.1| tRNA-dihydrouridine synthase A, partial [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330942603|gb|EGH45179.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 299
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 167/274 (60%), Gaps = 6/274 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD R R +SKHA LYTEM+ +++ G+ +RFL +HP+ LQ
Sbjct: 23 FSVAPMMDWTDQPCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHPLALQ 80
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + + +
Sbjct: 81 LGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCVKAMR 139
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG++ DSY +LCDF+ KV + + F +H+R A+L G+SP ENR I
Sbjct: 140 DAVGIPVTVKHRIGINGRDSYAELCDFVGKVQE-AGCQSFTVHARIAILEGLSPKENRDI 198
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y L HV
Sbjct: 199 PPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YLLAHV 256
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
D ++G+ + ++R +E + Y A + + GN
Sbjct: 257 DQQLFGSTAPVISRYDALESMRPYIAAHIASGGN 290
>gi|400406132|ref|YP_006588880.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
gi|400364385|gb|AFP85452.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
Length = 344
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 178/301 (59%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM++WTD H R RL S+ A LYTEML+A T++ + + L ++ E+HPI LQ
Sbjct: 28 FSVAPMLNWTDRHCRFFLRLFSRQALLYTEMLSANTLLLSKND---HLVYNNEEHPISLQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+G LA+ +LA YDEINLN GCPS ++ G FG LM + + V +S +
Sbjct: 85 VGSREPKILARCAKLAEERGYDEINLNVGCPSNRMK-KGFFGAYLMNEKEQVANCVSAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N+P++VK RIG+D++DSY+ L +F+ VS+ + F+IH+RKA LNG SP +NR I
Sbjct: 144 EAVNLPITVKTRIGIDENDSYSFLSEFVDTVSTKGGCKTFVIHARKAYLNGFSPKKNREI 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFP + F LNGGI + + LRK VM+GR Y+NP L V
Sbjct: 204 PPLNYERVYKLKQDFPSIRFVLNGGIVNLYDALQHLRK-CDGVMIGREVYRNP-SILMKV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ +G R+++ EK Y D L + G + H + + +L F PG G ++
Sbjct: 262 DSIFFGKLDPVTNRKEIFEKILPYIDNEL-SQGTSLNH---ITRHMLGLFQGLPGAGHWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|117618436|ref|YP_858131.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559843|gb|ABK36791.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 328
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 182/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+PDLT +NGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPDLTIAINGGVTSMEQTLEHLQH-LDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNNAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|289208454|ref|YP_003460520.1| TIM-barrel protein, yjbN family [Thioalkalivibrio sp. K90mix]
gi|288944085|gb|ADC71784.1| TIM-barrel protein, yjbN family [Thioalkalivibrio sp. K90mix]
Length = 329
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 174/303 (57%), Gaps = 11/303 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P FSVAPMMDWTD+ R RL+++ A LYTEM+ A +I+ G+ DR L +HP+
Sbjct: 10 PRFSVAPMMDWTDSWCRRFHRLLTRRALLYTEMVHANAVIH--GDRDRLLGHVAAEHPLA 67
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ D LA+A +A +DEINLN GCPS +V G FG LM P+ V +
Sbjct: 68 LQLGGSDPDTLAQAARIAAERGFDEINLNVGCPSDRVQS-GTFGACLMAQPEQVARMVRA 126
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ +VPV+VK RIG+D+ DS L +F+ V+ RHFI+H+RKA L G+SP +NR
Sbjct: 127 MQDAVDVPVTVKHRIGIDEQDSEADLRNFVETVAR-GGCRHFIVHARKAWLQGLSPKDNR 185
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+PPL YE + L +FP+LT LNGG++ V + L + VM GR AY PW L
Sbjct: 186 DVPPLDYERVFRLKAEFPELTIVLNGGLDDVRVAHGYLER-VDGVMFGRLAYHQPW-VLA 243
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD + + G+TR V+ Q D P R + + +L FH EPG
Sbjct: 244 EVDRLFFD-ETGGVTREAVL---QGLIDMAREMRAKGVPLAR-LTRHVLGLFHGEPGARQ 298
Query: 309 FKR 311
++R
Sbjct: 299 WRR 301
>gi|254456205|ref|ZP_05069634.1| tRNA-dihydrouridine synthase A [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083207|gb|EDZ60633.1| tRNA-dihydrouridine synthase A [Candidatus Pelagibacter sp.
HTCC7211]
Length = 334
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 197/333 (59%), Gaps = 22/333 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H R RL+SK+ LY+EM+A ++ I+ G+ + L++SPE+ P+ LQ
Sbjct: 11 ISVAPMMDCTDRHDRFFLRLMSKNVMLYSEMVATKSAIH--GDRKKILSYSPEEKPLALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN D LA+ ++A YDEIN+N GCPS KV + FG LM +P V E ++ +
Sbjct: 69 VGGSNKDELAEVAKIAEDMGYDEININLGCPSKKVQKN-MFGACLMKEPDLVAECINSMV 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+PV+ K RIG D + ++ L +FI+K+ + T+ FI+H+RKA+L G+SP +N I
Sbjct: 128 NSCNIPVTAKTRIGFDQTEDFDYLNNFIHKMRD-AGTKTFILHARKAMLTGLSPKQNLNI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P L Y Y + + P+L +NGGI+ V E++ L K VM+GR+ YQNP Y+L +
Sbjct: 187 PKLNYNMVYEIKKKNPELEIIINGGISKVSEIDNHL-KFCDGVMIGRSIYQNP-YSLIEI 244
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGD--AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
+ I+ ++ TR QVVEK Y D LGT N+ +M+ + +H + G+
Sbjct: 245 ERDIFNTHNNP-TREQVVEKLLEYADKEVKLGTKINH------IMRHTVGLYHGQTGSKD 297
Query: 309 FKR-------KADAAFQTCKTVKSFLEETIVAI 334
+KR ++ FQ K + + ++ AI
Sbjct: 298 WKRYLSDNLMARESDFQKTKHIMTIVQNNEKAI 330
>gi|421541689|ref|ZP_15987805.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
gi|402319537|gb|EJU55045.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
Length = 336
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 179/308 (58%), Gaps = 8/308 (2%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+
Sbjct: 6 QTLPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEG 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+ P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V
Sbjct: 64 EQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + + V+VK RIGVD Y + DF+ + + + FI+H+R A L+G+S
Sbjct: 123 DCLNAMQDAVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLS 182
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 PKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D YG S + +V++ Y A + +R +++ L H
Sbjct: 242 -MVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGL 298
Query: 304 PGNGLFKR 311
G ++R
Sbjct: 299 KGARTWRR 306
>gi|194289932|ref|YP_002005839.1| tRNA-dihydrouridine synthase a [Cupriavidus taiwanensis LMG 19424]
gi|193223767|emb|CAQ69774.1| tRNA-dihydrouridine synthase A [Cupriavidus taiwanensis LMG 19424]
Length = 337
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 159/262 (60%), Gaps = 6/262 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R +S+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 5 PRRISVAPMMDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLH--GDVPRHLDFDAAEHPV 62
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA A +L + Y EINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 63 ALQLGGSEPADLAMAAKLGQQWGYAEINLNCGCPSERVQ-RGAFGACLMAEPELVADCVK 121
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +PV+VK RIG+D + Y+ + DF+ KV+ + FI+H+R A+L G+SP EN
Sbjct: 122 AMRDAVEIPVTVKHRIGIDKIEHYDFVRDFVGKVAQ-AGCGTFIVHARNAILKGLSPKEN 180
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE Y L R+FP+L +NGGI + DE+ L VM+GR AY P Y L
Sbjct: 181 REIPPLRYEVAYQLKREFPELEILINGGILSHDEIARHLEH-VDGVMIGREAYHQP-YIL 238
Query: 248 GHVDTAIYGAPSSGLTRRQVVE 269
+D YG S+ + R VE
Sbjct: 239 AEMDARFYGDASAPVPSRLAVE 260
>gi|218768876|ref|YP_002343388.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis Z2491]
gi|433474824|ref|ZP_20432171.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|433479135|ref|ZP_20436433.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|433512709|ref|ZP_20469510.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|433514849|ref|ZP_20471624.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|433516934|ref|ZP_20473686.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|433519124|ref|ZP_20475848.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|433523273|ref|ZP_20479944.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|433528800|ref|ZP_20485407.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|433529607|ref|ZP_20486205.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|433531724|ref|ZP_20488292.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|433533934|ref|ZP_20490482.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|433540279|ref|ZP_20496735.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
gi|121052884|emb|CAM09236.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|432212333|gb|ELK68272.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|432218489|gb|ELK74347.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|432249788|gb|ELL05188.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|432255772|gb|ELL11100.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|432255909|gb|ELL11235.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|432256628|gb|ELL11949.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|432262465|gb|ELL17704.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|432263904|gb|ELL19114.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|432269203|gb|ELL24365.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|432269461|gb|ELL24619.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|432273178|gb|ELL28277.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|432277928|gb|ELL32973.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
Length = 336
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 180/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG ++ + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTANPIGYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|423211040|ref|ZP_17197593.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
gi|404614042|gb|EKB11046.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
Length = 328
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+P LT LNGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPKLTIALNGGVTSMEQTLEHLQH-VDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G ++ +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNNAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|428781097|ref|YP_007172883.1| tRNA dihydrouridine synthase A [Dactylococcopsis salina PCC 8305]
gi|428695376|gb|AFZ51526.1| tRNA dihydrouridine synthase A [Dactylococcopsis salina PCC 8305]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 176/304 (57%), Gaps = 16/304 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R L R I++ LYTEM+ II G+ + L FSPE+HP+ LQ
Sbjct: 44 LSVAPMMDRTDRHFRYLMRQITRKTLLYTEMVTIPAII--NGDRSKLLDFSPEEHPLALQ 101
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
IGG + + A+ +A + YDEINLN GCPS +V G FG LM P+ V + + +
Sbjct: 102 IGGDDPEKAAECARIAEDWGYDEINLNVGCPSDRVKS-GNFGACLMAQPEKVAKVVEAMQ 160
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++P++VK RIG+D+ D Y + F+ VS R F +H+RKA L G+SP ENR +
Sbjct: 161 NAVSLPITVKHRIGIDERDRYEDMSYFVRVVSDAGCQR-FTVHARKAWLQGLSPKENRNV 219
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH---VMVGRAAYQNPWYTL 247
PPL+Y+ Y L ++FP L +NGGI T+ E+ L HH VM+GRAAY NP
Sbjct: 220 PPLRYQDVYRLKQEFPHLFVEINGGIKTLAEIKEHL----HHLDAVMIGRAAYDNP-NLF 274
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD IYG SS T ++VV+ Y L + N + + + L+H F+ +PG
Sbjct: 275 SSVDREIYGEDSSPPTMKEVVKAMFPY----LDYWVNRGVKLNSMTRHLIHIFNGQPGAK 330
Query: 308 LFKR 311
++R
Sbjct: 331 AWRR 334
>gi|254418914|ref|ZP_05032638.1| TIM-barrel protein, yjbN family [Brevundimonas sp. BAL3]
gi|196185091|gb|EDX80067.1| TIM-barrel protein, yjbN family [Brevundimonas sp. BAL3]
Length = 338
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 180/320 (56%), Gaps = 20/320 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R+++ A LYTEM+ A +++ G+ D L F +HP+ LQ
Sbjct: 9 LSVAPMMDWTDRHCRAFHRVLTARALLYTEMVTAPAVLH--GDRDYLLGFDAVEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+A ++ AY YDEINLN GCPS +V G FG LM +P+ V + M+ I
Sbjct: 67 LGGSNPMELAEAAKVGEAYGYDEINLNVGCPSDRVQS-GKFGACLMREPELVADCMAAIR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ ++P +VKCRIGVDD + L + +++ FI+H+RKA L G+SP ENR +
Sbjct: 126 SAVSIPATVKCRIGVDDQEPATSLFATVDACAAVG-IEVFIVHARKAWLQGLSPKENRDV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG----AHHVMVGRAAYQNPWYT 246
PPL Y+ L R+ P L ++NGGI +DE A L + VM+GRAAY P
Sbjct: 185 PPLDYDLVRRLKRERPHLNISINGGIANLDEAEAHLAETDGVRLDGVMMGRAAYHEP-AI 243
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
LG D +YGA ++ + +++Y+ Y A L G P + + +L H PG
Sbjct: 244 LGQADRRLYGADTADVDAFAALDRYRPYIAARL-EEGVRLPA---ITRHMLGLMHGRPGA 299
Query: 307 GLFKR-------KADAAFQT 319
F+R +ADA +
Sbjct: 300 RAFRRILTVESIRADAGLEV 319
>gi|398807368|ref|ZP_10566246.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
gi|398089378|gb|EJL79894.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
Length = 329
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 164/257 (63%), Gaps = 6/257 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+HA LYTEM+ +++ G++ R L F E+HP+ LQ
Sbjct: 11 LSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGALVH--GDVPRHLRFHAEEHPVALQ 68
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA +L + YDEINLNCGCPS +V G FG LM +P+ V + + +
Sbjct: 69 LGGSEPADLAHCAKLGEEWGYDEINLNCGCPSERVQ-RGAFGACLMNEPQLVADCVKAMV 127
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D +SY + DF+ +VS + + FI+H+R A L G+SP +NR I
Sbjct: 128 DVVSVPVTVKHRIGIDKIESYEFVRDFVGQVSE-AGCQTFIVHARNAWLKGLSPKQNREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE + L +FP L F++NGGI+ +V+ LR VMVGR AY NPW+ L
Sbjct: 187 PPLRYELVHRLKHEFPSLRFSINGGISVSAQVHEHLRL-LDGVMVGREAYHNPWW-LAEW 244
Query: 251 DTAIYGAPSSGLTRRQV 267
D YGA + LTR +V
Sbjct: 245 DAEFYGAEAQSLTRDEV 261
>gi|340028079|ref|ZP_08664142.1| tRNA-dihydrouridine synthase A [Paracoccus sp. TRP]
Length = 322
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 180/321 (56%), Gaps = 19/321 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD+ R + R +S+H LYTEM+ A ++Y G+ + L F +HP+ LQ
Sbjct: 2 LSVAPMMDWTDSLCRRIHRRLSRHTLLYTEMVTAPALVY--GDRAKLLDFDVAEHPVALQ 59
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + + YDEINLN GCPS +V GCFG LM P+ V E ++ +
Sbjct: 60 LGGSDPAQLAEAARIGAEWGYDEINLNVGCPSDRVQS-GCFGAVLMTRPELVAECVAAMI 118
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + V V+VKCRIGVD+ L DFI +V + R IH+RKA L G+SP ENR +
Sbjct: 119 AASPVEVTVKCRIGVDNQAPEAVLPDFIARVRD-AGVRRLTIHARKAWLQGLSPRENREV 177
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA--ALRKGAHHVMVGRAAYQNPWYTLG 248
PPL Y + + + FP+L ++NGGI T+D A+ G VM+GRAAY PW LG
Sbjct: 178 PPLDYPLVHRMKQQFPELHLSINGGIATLDATREHLAVMDG---VMIGRAAYHQPWEVLG 234
Query: 249 HVDTAIYGAP--SSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
D P S L Q + + ++ T+ + + V + +L FH PG
Sbjct: 235 QADRLWGTEPPFSDPLAAAQALRE-------LVETHLDRGGRLHQVTRHMLGLFHGRPGA 287
Query: 307 GLFKRK-ADAAFQTCKTVKSF 326
++R+ ++ A + C ++
Sbjct: 288 RGWRRQLSEGASRACNRAEAL 308
>gi|398828532|ref|ZP_10586732.1| tRNA dihydrouridine synthase A [Phyllobacterium sp. YR531]
gi|398217390|gb|EJN03907.1| tRNA dihydrouridine synthase A [Phyllobacterium sp. YR531]
Length = 334
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 182/322 (56%), Gaps = 29/322 (9%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWTD H RTL R ++HA LYTEM+ A+ I+ G+ +R L F+ +HP+ LQ
Sbjct: 12 FAVAPMIDWTDRHCRTLHRQFTRHALLYTEMVVADAAIH--GDRERILGFADAEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + A Y EINLN GCPS +V G FG LM P V EA+S +
Sbjct: 70 LGGSDATKLAEAARIGEAMGYVEINLNVGCPSDRVQS-GTFGACLMKTPDVVTEAVSAMK 128
Query: 131 ANTNVPVSVKCRIGVDDHDS---YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+VPV+VKCRIGVDD D+ ++L ++ + + +H+RKA L G+SP EN
Sbjct: 129 RAVSVPVTVKCRIGVDDQDTDIALDELAKGVFDAGADA----LWVHARKAWLKGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQ 241
R IPPL Y+ Y L R +P +NGGI T+DE G H VM+GRA Y
Sbjct: 185 RDIPPLDYDRVYRLKRQYPSQFIGINGGIQTIDE-------GLQHLNHVDGVMLGRAVYH 237
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NP G VD AIYG+ + + +++ +Y DA L G V V + ++ FH
Sbjct: 238 NPMMLSG-VDQAIYGSERNPPSIDAIIDHMCLYADAHLAAGGR----VSHVARHMVGMFH 292
Query: 302 SEPGNGLFKRK-ADAAFQTCKT 322
G +++ ++ A QT T
Sbjct: 293 GAAGARRWRQSLSNEANQTGAT 314
>gi|71736634|ref|YP_274126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557187|gb|AAZ36398.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 339
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 184/329 (55%), Gaps = 17/329 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPELVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ V + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGNVQE-AGCGSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++ + + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFDSTALVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR-------KADAAFQTCKTVKSFLE 328
F++ KA+ +FLE
Sbjct: 309 RRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|423198255|ref|ZP_17184838.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
gi|404630479|gb|EKB27156.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
Length = 328
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 181/301 (60%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++HPI LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPISLQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ +LA YDE+N+N GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DLVDIPVTVKTRIGIDDQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+PDLT +NGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPDLTIAINGGVTSLEQTLEHLQH-LDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGQNKAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|398832210|ref|ZP_10590374.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
gi|398223747|gb|EJN10082.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
Length = 328
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 181/322 (56%), Gaps = 12/322 (3%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H R R I++H WLYTEM+ +++ G++ R L F+ E+HP+ LQ+GGS
Sbjct: 1 MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFNEEEHPVALQLGGSEP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
+LA+A L + YDEINLNCGCPS +V G FG LM +P V + + + ++
Sbjct: 59 ADLAQAARLGQQWGYDEINLNCGCPSERVQ-KGAFGACLMGEPTLVADCVKAMRDAVSID 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIG+D +SY+ + DF+ +++ + FI+H+R A+L G+SP ENR IPPLKY+
Sbjct: 118 VTVKHRIGIDSVESYDFVRDFVGQIAD-AGCHTFIVHARNAILKGLSPKENREIPPLKYD 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y Y L RDFP L +NGGI TV E++A L+ VM+GR AY NP+ G D YG
Sbjct: 177 YAYQLKRDFPQLEILINGGIKTVAEIDAHLQH-VDGVMLGREAYHNPYLMAG-FDARYYG 234
Query: 257 APSSG--LTRRQVVEKYQIYGDAILGTYGNNRP----HVRDVMKPLLHFFHSEPGNGLFK 310
G +R QV+ Y L +G+N + + + +L PG F+
Sbjct: 235 DLPHGRQASREQVIAAMLPYIRRQLALHGDNGRGGGLRLNSITRHMLGLLAGMPGARAFR 294
Query: 311 RKADAAFQTCKTVKSFLEETIV 332
+ + + + L E +
Sbjct: 295 QTLSDSKRLAEGDPELLHEALA 316
>gi|334143887|ref|YP_004537043.1| yjbN family TIM-barrel protein [Thioalkalimicrobium cyclicum ALM1]
gi|333964798|gb|AEG31564.1| TIM-barrel protein, yjbN family [Thioalkalimicrobium cyclicum ALM1]
Length = 372
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 174/313 (55%), Gaps = 25/313 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+++ AWLY+EM+ +IY NL RF+ P P+VLQ
Sbjct: 35 FSVAPMLDWTDRHCRYFHRLMTQQAWLYSEMVTTGAMIYGN-NLPRFIGRDPADKPVVLQ 93
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS D LA+ +L + Y+EINLN GCPS +V + G LM P V + ++ +
Sbjct: 94 LGGSKPDELAQCAKLGEEWGYNEINLNVGCPSDRVQNN-LIGACLMAHPALVADGVAAMK 152
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VKCRIG+DD + Y L FI + + + IIH+RKA L G+SP ENR +
Sbjct: 153 DAVTIPVTVKCRIGIDDQEDYQTLAAFIAGLVA-AGVDGVIIHARKAWLQGLSPKENRDV 211
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-----GAHHVMVGRAAYQNPWY 245
PPL Y + + + DFP L ++NGG+ T+ + + L + G VM+GRA Y+NP Y
Sbjct: 212 PPLNYTWVHQIKADFPQLAISINGGLKTLADAQSHLCECDGLVGVDGVMMGRAIYENP-Y 270
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRD------VMKPLLHF 299
L VD Y L+R GD ++ Y H+++ + + ++
Sbjct: 271 LLADVDGEFYADQRPALSR----------GDVLMAIYPYIEQHLQNGGRLNHITRHMMGL 320
Query: 300 FHSEPGNGLFKRK 312
FH PG L++R
Sbjct: 321 FHGCPGGRLWRRS 333
>gi|372282400|ref|ZP_09518436.1| tRNA-dihydrouridine synthase A [Oceanicola sp. S124]
Length = 335
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 155/250 (62%), Gaps = 4/250 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R L RL+S A LYTEM+ + ++ +G LA++PE+HP+ LQ
Sbjct: 16 LSVAPMMDWTDRHCRYLHRLLSPRALLYTEMVTSPALV--RGGALHLLAYNPEEHPVALQ 73
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA A L YDEINLNCGCPS +V G FG LM P+ V + ++ +
Sbjct: 74 LGGSDPEELAAAARLGAEAGYDEINLNCGCPSDRVQS-GTFGAVLMKHPELVADCVAAMR 132
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A V V+VKCRIGVDD D L DF+ K+S+ + R +H+RKA L G+SP ENR I
Sbjct: 133 AAVTVEVTVKCRIGVDDQDPEEVLPDFLDKISA-AGCRRVTVHARKAWLQGLSPKENRDI 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + + FPDL ++NGGI ++D+ A L +G VMVGRAAY P L
Sbjct: 192 PPLDYPLVLRMRQAFPDLHLSINGGITSLDQAEALLAQGLDGVMVGRAAYHEPGNMLCGA 251
Query: 251 DTAIYGAPSS 260
D I+G P
Sbjct: 252 DARIWGQPGG 261
>gi|418529717|ref|ZP_13095649.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
gi|371453237|gb|EHN66257.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
Length = 330
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 164/275 (59%), Gaps = 6/275 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+H LYTEM+ +++ G++ R L F E+HP+ LQ
Sbjct: 4 MSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVH--GDVARHLRFEVEEHPVALQ 61
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + YDEINLNCGCPS +V G FG LM + V + + +A
Sbjct: 62 LGGSEPADLAHSARLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEAALVADCVKAMA 120
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D +SY+ + DF+ V+ + + F++H+R A L G+SP ENR +
Sbjct: 121 DVVSVPVTVKHRIGIDKIESYDFVRDFVGTVAD-AGCQVFVVHARNAWLKGLSPKENREV 179
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L RDFP LT +NGGI T DE+ + VMVGR AY NPW+ +
Sbjct: 180 PPLRYEVVAQLKRDFPGLTIAVNGGIKT-DEIVLQQLQQVDGVMVGREAYHNPWW-MSSW 237
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 285
D Y S TR + E+ +Y + +G +
Sbjct: 238 DALYYQDKSRERTREHIEEQMVLYMEREAREHGTH 272
>gi|416051235|ref|ZP_11577333.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993253|gb|EGY34627.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 311
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 183/324 (56%), Gaps = 22/324 (6%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWT H R R S+HA LYTEM+ + II+ + + L F + P+ LQ+GGS+
Sbjct: 1 MLDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYD---HLDFDLAEQPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
L +LA +Y EINLN GCPS +V +G FG LM + V E + + +
Sbjct: 58 PAQLKHCAQLAEQRDYQEINLNVGCPSDRVQ-NGMFGACLMANAALVAECVQQMQEAVRI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY+ LC+FI V + R FI+H+RKA L+G+SP +NR IPPL Y
Sbjct: 117 PVTVKTRIGIDDFDSYDFLCNFIETVQQ-AGCREFIVHARKAWLSGLSPKQNREIPPLDY 175
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E Y L RDFP L ++NGGI T+DE+ L++ VMVGR AYQNP LG++D ++
Sbjct: 176 ERVYQLKRDFPHLLISINGGIKTLDEMQQHLQR-VDGVMVGREAYQNP-SLLGYIDQTLF 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-- 311
+ +T RQ VEK Y + L G Y N+ +++ +L F G ++R
Sbjct: 234 DPNAPIVTPRQAVEKMFPYIEQQLSQGVYLNH------IVRHMLGAFQHCKGARQWRRHL 287
Query: 312 -----KADAAFQTCKTVKSFLEET 330
KA A +T F+EE
Sbjct: 288 SENAYKAGAGINVVETALGFVEEA 311
>gi|385338763|ref|YP_005892636.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411177|emb|CBY91582.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
Length = 336
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 181/310 (58%), Gaps = 16/310 (5%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYG----DAILGTYGNNRPHVRDVMKPLLHFFH 301
+ D YG S + +V++ Y A GT +R +++ L H
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQRLYTYSQTQIQAGCGTI------LRHIVRHSLGLMH 296
Query: 302 SEPGNGLFKR 311
G ++R
Sbjct: 297 GLKGARTWRR 306
>gi|385323486|ref|YP_005877925.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|421543744|ref|ZP_15989834.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|421545808|ref|ZP_15991867.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|421547875|ref|ZP_15993906.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|421552086|ref|ZP_15998066.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|421558404|ref|ZP_16004286.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
gi|261391873|emb|CAX49332.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|402325204|gb|EJU60615.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|402326033|gb|EJU61439.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|402327217|gb|EJU62608.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|402332634|gb|EJU67958.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|402338224|gb|EJU73461.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
Length = 336
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 180/312 (57%), Gaps = 8/312 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V+ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKRKADAAF 317
++R A
Sbjct: 301 ARTWRRMLSDAM 312
>gi|68071985|ref|XP_677906.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498194|emb|CAH96102.1| conserved hypothetical protein [Plasmodium berghei]
Length = 441
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 210/399 (52%), Gaps = 47/399 (11%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
+ + P VAPM++ T+ H+R L R+ISK L+TEM+ T++Y NL+ L F+
Sbjct: 57 KNEIEPLIQVAPMINVTNRHFRALVRIISKKVQLWTEMIVDNTLLYNINNLEEHLGFNKN 116
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HPIV Q+GGS+ +L++A L YDE+N+N GCPS KVA G FG LM P+ V
Sbjct: 117 EHPIVCQLGGSDPISLSEAAILVEQAGYDELNINVGCPSTKVANKGAFGAYLMKKPQLVK 176
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ I +PV+VK R GVDD DS++ L FI VSS + HFIIHSRKA L G+
Sbjct: 177 NIVYEIKKKVQIPVTVKIRTGVDDLDSFSFLRSFIETVSS-AGCDHFIIHSRKAWLKGLD 235
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--------KGAHH--- 232
P +NR+IPPL+Y + L + +P++ FTLNGGI ++++ A L G H+
Sbjct: 236 PKQNRSIPPLEYNKVFDLCKLYPNIKFTLNGGIKSIEQGVALLNGYAPINNMSGKHNNCT 295
Query: 233 -----------------VMVGRAAYQNPWYTLGHVDTAIYG--APSSGLTRRQVVEKYQI 273
VM+GR+ +N L D +Y P++ RR V++ Y+
Sbjct: 296 DNNYIKIKDYDINPLYGVMIGRSCMEN-ITVLAKTDKLVYNYDIPTTAYNRRTVLDAYKS 354
Query: 274 YGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA 333
Y + Y + +++KP+L PG+ LF+ K D+ + ++ + +
Sbjct: 355 YLEQNSSFYS--LVNAFELLKPILGILKGMPGHRLFRNKIDSYIRKYASILNCAQ----- 407
Query: 334 IPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEV 372
+LD + + +++ DL+ YKA+++ +
Sbjct: 408 ----ILDKAMSDV----DNIAPGCLDLVLDDYKAQQEYI 438
>gi|156932320|ref|YP_001436236.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ATCC BAA-894]
gi|156530574|gb|ABU75400.1| hypothetical protein ESA_00095 [Cronobacter sakazakii ATCC BAA-894]
Length = 313
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 171/298 (57%), Gaps = 14/298 (4%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R R +S LYTEM+ II+ +G+ +LA+S E+HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++
Sbjct: 58 PAALAHCAKLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAQLVADCIKAMRDVVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR IPPL Y
Sbjct: 117 PVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ L RDFP LT ++NGGI T+D+V L VMVGR AYQNP L VD I+
Sbjct: 177 PRVHQLKRDFPKLTMSINGGIKTLDDVKTHLEH-MDGVMVGREAYQNPG-ILASVDREIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G VV Y + L GTY + V + +L F PG ++R
Sbjct: 235 GLDVPDADPVAVVRAMYPYIERELAKGTY------LGHVTRHMLGLFQGIPGARQWRR 286
>gi|90021133|ref|YP_526960.1| tRNA-dihydrouridine synthase A [Saccharophagus degradans 2-40]
gi|89950733|gb|ABD80748.1| TIM-barrel protein, yjbN family [Saccharophagus degradans 2-40]
Length = 331
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 164/266 (61%), Gaps = 6/266 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F +APMMDW+D H R R ++K + LYTEM+ II+ G+ +RFL F+ +HPI LQ
Sbjct: 15 FCLAPMMDWSDKHCRYFWRQLTKKSRLYTEMVVTGAIIH--GDRERFLQFNNAEHPIALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +A + YDEINLNCGCPS +V +G G LM P+ V E + +
Sbjct: 73 VGGSDPAALAQCARIAQDWGYDEINLNCGCPSDRVQ-NGMIGAILMSKPELVAECIDAMQ 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD + Y L +F+ V+ + FI+H+RKA L G+SP ENR I
Sbjct: 132 KACDIPVTVKHRIGIDDMEDYEALSNFVTTVAQ-TGCNTFIVHARKAWLKGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L + FP L +NGGIN +++ L VM+GR AY NP++ L V
Sbjct: 191 PPLRYDLVVQLKKAFPHLNIVINGGINCLEQAKTLL-NDLDGVMIGREAYHNPFF-LADV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGD 276
D ++G P+ R +V++K+ Y +
Sbjct: 249 DQKLFGTPNPSANRHEVLDKFIHYAE 274
>gi|254449021|ref|ZP_05062475.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
gi|198261415|gb|EDY85706.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
Length = 315
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 176/296 (59%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+S HA LYTEM+ +++ GN+ R LAF ++HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRYFHRLLSPHALLYTEMVTTGALLH--GNVSRHLAFHSDEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+ +A+ ELA + YDE+N+N GCPS +V G FG LM +P V ++ + + ++
Sbjct: 59 PEAMARCAELAERWGYDEVNINVGCPSDRVQS-GAFGACLMAEPDTVASCVAAMKSAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD D Y L DF KV + + + +H+RKA L G+SP ENR IPPL Y
Sbjct: 118 PVTVKTRIGIDDMDDYQNLFDFTAKVIAAN-CDNLTVHARKAWLKGLSPKENRDIPPLMY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
+ Y L RD+P+L +NGGI V+ LR VM+GRAAYQNPW+ L ++ ++
Sbjct: 177 DKVYQLKRDYPELEVCINGGITDSASVSEHLRH-TDGVMIGRAAYQNPWW-LVELEQNLF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
T+ +VVE Y +A L G ++ + + +L F + PG ++R
Sbjct: 235 DELHRP-TQHEVVEGMLEYIEAELLAGGQ----LKHITRHMLGLFQAVPGAKQWRR 285
>gi|126664937|ref|ZP_01735920.1| Dihydrouridine synthase TIM-barrel protein yjbN [Marinobacter sp.
ELB17]
gi|126630307|gb|EBA00922.1| Dihydrouridine synthase TIM-barrel protein yjbN [Marinobacter sp.
ELB17]
Length = 321
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 18/300 (6%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWT HYR +AR +SKHA LYTEM+ +I+ G+ +RFL + ++P+ LQ+GGSN
Sbjct: 1 MMDWTTPHYRYMARQLSKHALLYTEMVTTGALIH--GDTERFLHHNAAEYPLALQLGGSN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA +LA + + E+NLN GCPS KV + G LM P V E + A T++
Sbjct: 59 AGELAHCADLAQQFGFSEVNLNVGCPSDKVQNN-MIGACLMGHPDIVAEGFKAMQAATDI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK R G++ +S+++LC FI V++ + + FI+H+R A+L G+SP ENR +PPLKY
Sbjct: 118 PVTVKHRTGINGRESWDELCGFIETVAA-AGCKTFIVHARIAVLEGLSPKENRDVPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTA 253
++ Y L +P L +NGGI TV+E + L AH VM+GR AY NPW L VD+
Sbjct: 177 DWVYHLKAKYPQLEIIINGGIKTVNECHQHL---AHTDGVMLGREAYHNPW-ILTQVDSE 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
+G P + R + +E + + L G Y + + + +L FH PG F+R
Sbjct: 233 FFGEPEKAVNRHEALEAMYPFIEQELARGVY------LGHISRHMLGLFHGVPGGRQFRR 286
>gi|319788129|ref|YP_004147604.1| TIM-barrel protein, yjbN family [Pseudoxanthomonas suwonensis 11-1]
gi|317466641|gb|ADV28373.1| TIM-barrel protein, yjbN family [Pseudoxanthomonas suwonensis 11-1]
Length = 337
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 184/308 (59%), Gaps = 21/308 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ HA LYTEM+ A ++ G+ R L F P +HP+ LQ
Sbjct: 14 LSVAPMMDWTDRHCRVFHRLLAPHARLYTEMVHANAVVL--GDRGRLLGFDPVEHPVALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI- 129
+GGS LA AT + + YDE+NLNCGCPS +V G FG LM +P V E ++ +
Sbjct: 72 LGGSEPGALANATRIGAEWGYDEVNLNCGCPSDRVQA-GRFGACLMREPSLVAECVAAMI 130
Query: 130 ----AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
A+ NVPV+VKCR+GVD+ Y + FI V++ R F++H+R A L G+SP
Sbjct: 131 EGAAASGRNVPVTVKCRLGVDEDHEYERFAAFIDAVAAAG-CRTFVVHARNAWLQGLSPK 189
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNP 243
ENR +PPL+Y++ + L R+ P L +NGGI + +V+ L AH VM+GRAAY +P
Sbjct: 190 ENREVPPLRYDWAWRLKRERPGLEILVNGGIASEAQVHEQL---AHVDGVMLGRAAYHDP 246
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L +D A+YG + R ++ + + Y +A L + ++ + + +L FH +
Sbjct: 247 -YLLHRLDVALYGGELA--DRASLLRRLRPYVEAQLASG----LALKHITRHVLGLFHGQ 299
Query: 304 PGNGLFKR 311
PG LF++
Sbjct: 300 PGGRLFRQ 307
>gi|33151604|ref|NP_872957.1| tRNA-dihydrouridine synthase A [Haemophilus ducreyi 35000HP]
gi|38604736|sp|Q7VNV2.1|DUSA_HAEDU RecName: Full=tRNA-dihydrouridine synthase A
gi|33147824|gb|AAP95346.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 323
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 176/303 (58%), Gaps = 16/303 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+ A LYTEM+ A I++ + +L L + P + P+ LQ
Sbjct: 10 FAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDL---LEYDPAEQPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L A Y EINLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV++K RIG+D DSY LCDFI K+ S + FI+H+RKA L+G+SP ENR I
Sbjct: 126 DVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS--QDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L K VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTK-VDGVMVGREAYQNP-ALLGEI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ +T R VE Y + L G Y N+ +++ +L F + G
Sbjct: 242 DQQLFDQNQPLITARIAVENMLPYIEQQLSKGVYLNH------IVRHMLGAFQNCKGARQ 295
Query: 309 FKR 311
++R
Sbjct: 296 WRR 298
>gi|254805616|ref|YP_003083837.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
gi|254669158|emb|CBA07852.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
Length = 336
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 179/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V+ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|119384161|ref|YP_915217.1| tRNA-dihydrouridine synthase A [Paracoccus denitrificans PD1222]
gi|119373928|gb|ABL69521.1| tRNA-U16,U17-dihydrouridine synthase [Paracoccus denitrificans
PD1222]
Length = 329
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 10/302 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
++APMMDWTD+ R + RL+S+ A LYTEM+ A ++Y G+ + L F +HP+ LQ
Sbjct: 9 LAIAPMMDWTDSLCRRIHRLLSRRALLYTEMVTAPALVY--GDRAKLLDFDAGEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A + + YDEINLN GCPS +V GCFG LM P+ V E ++ +
Sbjct: 67 LGGSDPAQLAEAARIGADWGYDEINLNVGCPSDRVQS-GCFGAVLMTRPELVAECVAAMI 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + V V+VKCRIGVD+ D L DFI ++ + R +H+RKA L G+SP ENR +
Sbjct: 126 AASPVEVTVKCRIGVDEQDPEAVLPDFIARMRE-AGVRRMTVHARKAWLQGLSPRENREV 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + + + FPDL ++NGGI ++D V L VM+GRAAY PW LG
Sbjct: 185 PPLDYPLVHRMKQAFPDLHLSINGGIASLDAVRDHL-AAMDGVMIGRAAYHQPWDMLGQA 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + + +A L T G + + +L FH PG ++
Sbjct: 244 DR-LWGEEPRFADPLEAARALRDLVEAHLATGGR----LHQATRHMLGLFHGRPGARGWR 298
Query: 311 RK 312
R+
Sbjct: 299 RQ 300
>gi|254473354|ref|ZP_05086751.1| tRNA-dihydrouridine synthase A [Pseudovibrio sp. JE062]
gi|211957470|gb|EEA92673.1| tRNA-dihydrouridine synthase A [Pseudovibrio sp. JE062]
Length = 348
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 185/326 (56%), Gaps = 10/326 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R++SK++ LYTEM+ +I+ G+ DR L FS ++ P+
Sbjct: 14 PVFAVAPMLDWTDRHCRAFHRVLSKNSLLYTEMVTTGALIH--GDRDRHLNFSRQEQPVA 71
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
Q+GGS+ LA+ ++ + YDE+NLN GCPS +V G FG LML+P V E ++
Sbjct: 72 CQLGGSDPKALAECAKMVEDWGYDEVNLNVGCPSDRVQS-GKFGACLMLEPDLVAECIAA 130
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ ++PV+ KCRIGVDD + L KV + + T +H+RKA L G+SP ENR
Sbjct: 131 MKDVVSIPVTTKCRIGVDDQEPEEALNALADKVIA-AGTDALWVHARKAWLKGLSPKENR 189
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
+PPL Y+ Y L + PD+ +NGG+ T++E +A L K VM+GRAAYQNP L
Sbjct: 190 DVPPLDYDLVYRLKQRLPDVFIGINGGVATLEETSAHLEK-LDGVMMGRAAYQNPML-LA 247
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +YG + +T + ++ Y+ Y + L T G + + + +L + PG
Sbjct: 248 EVDRVVYGEDGTAITPVEAMDVYRGYIENEL-TAGTK---LASITRHILGTYQGVPGARH 303
Query: 309 FKRKADAAFQTCKTVKSFLEETIVAI 334
F+R LEE + A+
Sbjct: 304 FRRIMTVEANKTGAGIEVLEEALAAV 329
>gi|317046530|ref|YP_004114178.1| yjbN family TIM-barrel protein [Pantoea sp. At-9b]
gi|316948147|gb|ADU67622.1| TIM-barrel protein, yjbN family [Pantoea sp. At-9b]
Length = 331
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 177/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R R +S LYTEM+ II+ +G+ +LAFS ++HP+ LQ
Sbjct: 10 FSIAPMLDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGD---YLAFSEDEHPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPAALAQCAQLAEARGYDEINLNVGCPSDRVQ-NGRFGACLMGEAALVADCIKAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDF+ V+ FIIH+RKA L+G+SP ENR I
Sbjct: 126 DVVSIPVTVKTRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI ++ E L+ VM+GR AYQNP L V
Sbjct: 186 PPLDYPRVYQLKRDFPQLTMAINGGIKSLAEAKVHLQH-MDGVMMGREAYQNPG-ILAQV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++G + + VV Y +A L GTY + V + +L F PG
Sbjct: 244 DRELFGRDTPAVDPVAVVRSMYPYIEAELAKGTY------LGHVTRHMLGLFQGIPGARQ 297
Query: 309 FKR 311
++R
Sbjct: 298 WRR 300
>gi|417841940|ref|ZP_12488036.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
gi|341948036|gb|EGT74673.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
Length = 327
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 183/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSEPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T F+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALHFIE 326
>gi|354564760|ref|ZP_08983936.1| TIM-barrel protein, yjbN family [Fischerella sp. JSC-11]
gi|353549886|gb|EHC19325.1| TIM-barrel protein, yjbN family [Fischerella sp. JSC-11]
Length = 346
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 183/329 (55%), Gaps = 10/329 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R R I++ LYTEM+ I++ G+ + L F PE+ P+VLQ
Sbjct: 20 LSVAPMMDRTDRHFRYFMRQITRRTLLYTEMVTTAAILH--GDKEHLLGFFPEEKPLVLQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+ + +A YDEINLN GCPS +V G FG LM P+ V + ++ +
Sbjct: 78 VGGDNPKELAECSRIAEDMGYDEINLNVGCPSSRVQD-GNFGACLMAHPEKVADCVAEMI 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T +PVSVK RIG+DD D Y + +F+ VS R F +H+RKA L G+SP ENR I
Sbjct: 137 NATRIPVSVKHRIGIDDRDRYEDMENFVRIVSQAGCQR-FTVHARKAWLQGLSPKENRDI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y Y L ++FP L +NGGI +++V L + VM+GRAAY +P Y
Sbjct: 196 PPLRYGDVYRLKQEFPHLFIEINGGILNMEQVKEHL-QSVDAVMIGRAAYDHP-YLFATA 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ IYG L+R +V E Y D + + + + +L F +PG+ ++K
Sbjct: 254 DSEIYGEAMQPLSRHEVAEAMLAYIDYWVA----KGLKLNKITRHMLQLFAGQPGSRVWK 309
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSVL 339
R + ++E + +P+S L
Sbjct: 310 RHLTENSCYLGAGSAVVQEALAQVPNSPL 338
>gi|351728741|ref|ZP_08946432.1| tRNA-dihydrouridine synthase A [Acidovorax radicis N35]
Length = 328
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 171/299 (57%), Gaps = 15/299 (5%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+++ LYTEM+ A II+ G +R L F+ E+HP+ LQ+GG+
Sbjct: 1 MMDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIH--GGTERHLRFNAEEHPVALQLGGNE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D LA+A L + Y EINLNCGCPS +V G FG SLM P+ V + + + +V
Sbjct: 59 PDRLAEAARLGAQWGYGEINLNCGCPSDRVQ-RGAFGASLMKSPQLVADCVKAMKDVVDV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D + Y + DFI V+ T FI+H+R A L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDKVEDYGFVRDFIGTVADAGCTV-FIVHARNAWLQGLSPKENRDIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH---VMVGRAAYQNPWYTLGHVDT 252
E + L +FP T +NGGI T +A +++ H VM+GR AY NPW+ L D
Sbjct: 177 EVVHQLKAEFPQFTIAINGGIAT----DAVVQEQLEHLDGVMIGREAYHNPWW-LARWDQ 231
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
YG LTR +V Y + YG PH + + +L HS PG ++++
Sbjct: 232 LYYGGAPCPLTREEVELAMVEYMEREAAQYGTPWPH---IARHMLGLRHSLPGARIWRQ 287
>gi|238899063|ref|YP_002924745.1| tRNA-dihydrouridine synthase A [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466823|gb|ACQ68597.1| tRNA-dihydrouridine synthase A [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 343
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 188/321 (58%), Gaps = 17/321 (5%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+A +Y F VAPM+DWTD H R RL++K+A+LYTEM+ +IY Q + +L +S
Sbjct: 19 IAPKYFSHRFCVAPMLDWTDRHCRYFHRLLTKNAFLYTEMVTTGALIYGQAD---YLDYS 75
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
E+ P+ LQ+GG N LA+ +L Y EINLN GCPSP+V G FG +LM D +
Sbjct: 76 EEEQPVALQLGGHNPFELAQCAQLGEQRGYQEINLNLGCPSPRVK-KGAFGAALMQDIEQ 134
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V + + ++PV++K RIGVD+ DSY L FI K+S T IIH+RKA L+G
Sbjct: 135 VCVCLKAMCDVVSIPVTIKIRIGVDEQDSYEFLSQFIEKISREIDT--VIIHARKAWLSG 192
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP ENR IPPL Y Y L +DFP L +NGGI+T++E L+ VM+GRAAYQ
Sbjct: 193 LSPKENREIPPLDYPRVYQLKKDFPKLNIVINGGISTLEEAKQHLQY-VEGVMIGRAAYQ 251
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHF 299
NP L VD+ ++ A + ++ + Y + L GT+ ++ +++P+L
Sbjct: 252 NP-TLLTQVDSELFNAQDPLIDITASIKAFYPYIEQELSRGTF------LKHLIRPMLGL 304
Query: 300 FHSEPGNGLFKRK-ADAAFQT 319
F G ++R ++ A+Q+
Sbjct: 305 FQGCAGARQWRRYLSENAYQS 325
>gi|434397477|ref|YP_007131481.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
gi|428268574|gb|AFZ34515.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
Length = 330
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM+ TD H+R L R I++ LYTEM+ II+ G+ + L FS E+ P+VLQ
Sbjct: 15 LSIAPMMERTDRHFRYLMRQITRRTLLYTEMITTAAIIH--GDRHKLLDFSLEEKPLVLQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ ++ + YD +NLN GCPSP+V +G FG LM P+ V A++ +
Sbjct: 73 LGGDHPQELAQCAKIGEDWGYDAVNLNVGCPSPRVQ-NGNFGACLMAQPELVATAVAKMQ 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ D Y L F+ V+ + RHFI+H+RKA L G+SP ENR I
Sbjct: 132 DAVSIPVTVKHRIGIDERDRYEDLAQFVQIVAE-AGCRHFIVHARKAWLKGLSPKENRNI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ + L ++FP L +NGGI T++++ L VM+GRAAY +P Y V
Sbjct: 191 PPLRYQDVHRLKQEFPHLLIEINGGIITLEQIKEQLNY-VDAVMIGRAAYDDP-YLFATV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IY ++ TR QVVE Y D + + + + +L F +PG +K
Sbjct: 249 DRDIYQQSATPPTRHQVVEAMLPYID----YWTKKGLKLHGISRHMLQLFAGQPGTKAWK 304
Query: 311 R 311
R
Sbjct: 305 R 305
>gi|359684072|ref|ZP_09254073.1| tRNA-dihydrouridine synthase A [Leptospira santarosai str.
2000030832]
Length = 312
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 171/268 (63%), Gaps = 6/268 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
S+APMMDWTD H+R RLISKH +LYTEM+ ++ +G+ RFL+++PE+ P+ +Q+
Sbjct: 30 SLAPMMDWTDRHFRYFLRLISKHTFLYTEMIHTGAVL--RGDRHRFLSYNPEELPLAIQL 87
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GG + L++++++ Y Y EINLN GCPS +V G FG LM P+ V E + +
Sbjct: 88 GGDDPKALSESSKIGEDYGYSEINLNVGCPSDRVR-EGNFGACLMKTPERVAELVFAMDT 146
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ ++PV+VKCRIG+ ++ LC FI V + + FI+H+R A+L G+SPA+NR +P
Sbjct: 147 SVSIPVTVKCRIGIPGKETLEDLCRFIECVRQ-AGVKRFIVHARIAILGGLSPAQNRQVP 205
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+Y AL R+FP+L +NGGI T+ E+ L K VM+GRAAY+ P Y VD
Sbjct: 206 PLRYADVEALKREFPNLLIEINGGIRTIAEMRERL-KTNDGVMIGRAAYETP-YLFSEVD 263
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAIL 279
+ + S L+R +V+ + + Y + ++
Sbjct: 264 SLFFNDDSPSLSRGEVLLRMRDYVEEVV 291
>gi|350572018|ref|ZP_08940329.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
gi|349790787|gb|EGZ44687.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
Length = 336
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 184/315 (58%), Gaps = 13/315 (4%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I++H WLY EM+ A +I+ G+ DRFL + ++
Sbjct: 5 LPPRRLSVAPMLDWTDRHYRYMARQITRHTWLYGEMINAGAVIF--GDKDRFLLHNECEN 62
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS +LAKA + A Y YDE+NLNCGCPSP+V G FG LM + V +
Sbjct: 63 PVALQLGGSEPADLAKAAKAAEQYGYDEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADC 121
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + + V+VK RIGVD Y + DF+ +++ + + +I+H+R A L+G+SP
Sbjct: 122 LNAMQDAVQIDVTVKHRIGVDRQTEYQSVADFVGTLAAKTACKTYIVHARNAWLDGLSPK 181
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNP 243
ENR +PPLKY+Y Y L ++FPDL +NGGI+T +++ A L AH VMVGR Y NP
Sbjct: 182 ENRDVPPLKYDYVYRLKQEFPDLEIIINGGIHTNEQIAAHL---AHVDGVMVGRECYHNP 238
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
+ D+ YG + +V K Q Y + +R + + L H
Sbjct: 239 -MIMRQWDSLFYGDNREPVAYEALVAKLQAYAQEQIAA--GRGTILRHMARHYLGLMHGL 295
Query: 304 PGNGLFKRK-ADAAF 317
G ++R +DAA
Sbjct: 296 KGARTWRRMLSDAAL 310
>gi|344341571|ref|ZP_08772489.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
gi|343798503|gb|EGV16459.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
Length = 312
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 169/296 (57%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H R RLIS+H LYTEM+ +I+ G +RFLAF +HP+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRYFLRLISRHTLLYTEMVTTGALIH--GERERFLAFDAAEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
++ + YDEIN+N GCPS +V +G FG LM +P V + ++ + V
Sbjct: 59 PRDMTHCARMGADRGYDEININVGCPSDRVQ-NGRFGACLMAEPSLVADCVAAMKDAVAV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+DD DSY++L DF V+ + ++H+RKA L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKTRIGIDDRDSYDELLDFAGTVTE-AGCDALVVHARKAWLAGLSPKENRDIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E L RD P T +NGGI T+DE A K VM+GR AY NPW L D I+
Sbjct: 177 EVVERLKRDLPHQTIAINGGIKTLDE-TAGFLKTLDGVMIGREAYHNPW-ILAEADRTIF 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G TR ++++ + Y + L P + + + +L F +PG ++R
Sbjct: 235 GDARRAPTRNEILDAFLPYVEREL---AGGTP-LSAMSRHILGLFQGQPGARAWRR 286
>gi|99080805|ref|YP_612959.1| tRNA-dihydrouridine synthase A [Ruegeria sp. TM1040]
gi|99037085|gb|ABF63697.1| TIM-barrel protein yjbN family [Ruegeria sp. TM1040]
Length = 336
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 175/321 (54%), Gaps = 9/321 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWT R L RL+S+ LYTEM+ A ++ +G L P +HP+ LQ
Sbjct: 17 LSVAPMMDWTTRECRYLHRLLSRETLLYTEMVTAPALV--RGGALHLLDHDPSEHPVALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A L YDEINLNCGCPS +V G FG LM P+ V + ++ +A
Sbjct: 75 LGGSDPKELAEAARLGAEAGYDEINLNCGCPSDRVQS-GAFGAVLMQTPELVADCVAAMA 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+V V+VKCRIGVDD L DF+ K+ + + + IH+RKA L G+SP ENR I
Sbjct: 134 EAVSVEVTVKCRIGVDDQTPDEILPDFLDKIRA-AGVKRVTIHARKAWLQGLSPKENRDI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE +A+ F D+ +LNGGI ++DE A L +G VMVGRAAY P L
Sbjct: 193 PPLDYELVHAMKSAFADMHISLNGGITSLDEAQAQLARGLDGVMVGRAAYHQPADVLCAA 252
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG ++ +VV + Y + + + +R H + + +L F PG ++
Sbjct: 253 DPRIYGTGTAS-DPLEVVRQMLPYIEQQMQS--GSRLH--QITRHMLGLFAGRPGARQWR 307
Query: 311 RKADAAFQTCKTVKSFLEETI 331
R +EE +
Sbjct: 308 RHLSEGAHRTGAGPELVEEAL 328
>gi|83945621|ref|ZP_00957967.1| TIM-barrel protein, yjbN family protein [Oceanicaulis sp. HTCC2633]
gi|83850987|gb|EAP88846.1| TIM-barrel protein, yjbN family protein [Oceanicaulis alexandrii
HTCC2633]
Length = 332
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 176/296 (59%), Gaps = 11/296 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPMMDWTD H R R++++ A LYTEM + +I+ G++ R + F +HP+ +Q
Sbjct: 12 FTVAPMMDWTDRHCRAFHRVLTRRAVLYTEMAVDQALIH--GDVPRLIGFDASEHPVAIQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ D LA+A+++A + Y EINLN GCPS +V G FG LM +P+ V + ++ +
Sbjct: 70 LGGSDPDILARASKIAEGFGYLEINLNVGCPSDRVQS-GKFGACLMREPELVRDCLTAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK R+GVDD D L F+ V S + FI+H+RKA L G+SP ENR +
Sbjct: 129 EAVSVPVTVKHRLGVDDQDPEKTLFGFVETVRE-SGVKTFIVHARKAWLKGLSPKENRDV 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + + PDL LNGG+ T++ A + GA +M+GRAAY PW TL V
Sbjct: 188 PPLDYDLVRRMKAEHPDLEVLLNGGLETLEHGMAEI-HGADGIMLGRAAYHTPW-TLAEV 245
Query: 251 DTAIYGAPSSGL-TRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
DT IYG S T + VE Y+ Y + L + + + + +L F PG
Sbjct: 246 DTRIYGEASDPCATPFEAVEAYRPYVERQL----DQGVKLHAITRHMLGLFAGRPG 297
>gi|416384996|ref|ZP_11684716.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
gi|357264948|gb|EHJ13769.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
Length = 325
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 173/296 (58%), Gaps = 12/296 (4%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MD+TD H+R L R I++H LYTEM+ + I + G+ + L FSPE+ P+ LQ+GG N
Sbjct: 1 MDYTDRHFRYLMRQITRHTLLYTEMIVSAAI--KHGDRPKLLDFSPEEKPLSLQLGGDNP 58
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA+ +A + YDEINLN GCPS +V G FG LM P+ V + + + N+P
Sbjct: 59 QELAECAIIAEDWGYDEINLNVGCPSDRVQS-GHFGACLMAKPELVAQCVQKMQQGVNIP 117
Query: 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196
V+VK RIG+DD DSY ++ F+ V+ R F IH+RKA L G+SP ENR IPPL+Y+
Sbjct: 118 VTVKQRIGIDDQDSYEEMARFVAIVAEAGCQR-FTIHARKAWLKGLSPKENRNIPPLRYQ 176
Query: 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256
Y L +DFP L +NGGI +++V+ L K VM+GRAAY NP Y VD IY
Sbjct: 177 DVYRLKQDFPHLLIEINGGITNLEQVDNHL-KIVDAVMIGRAAYDNP-YLFATVDRDIYQ 234
Query: 257 APSSGLTRRQVVEKYQIYGDAILGTYGNNRPH-VRDVMKPLLHFFHSEPGNGLFKR 311
TR +++EK Y D + +R H + + + LL F PG +KR
Sbjct: 235 EDIIPATRHEIIEKMLPYID-----HWVSRGHKLHRISRHLLAMFAGIPGTKAWKR 285
>gi|400405846|ref|YP_006588705.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400364209|gb|AFP85277.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 344
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 157/251 (62%), Gaps = 6/251 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P FSVAPM+D TD H R R +S+ A LYTEM+ + + +G+ +LA++ +HP+
Sbjct: 25 PGRFSVAPMLDRTDRHCRFFLRQLSRRALLYTEMVTTNALFHGKGD---YLAYNDAEHPL 81
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN D LA+A + A YDEINLN GCPS +V H C G LM + V +S
Sbjct: 82 ALQLGGSNPDVLARAAKTAQERGYDEINLNVGCPSSRVQ-HNCLGACLMAEKDRVAACVS 140
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++P++VK R+G+D+ DSY+ LC+FI VS+ + FIIH+RKA L G+ P EN
Sbjct: 141 AMNEAVSLPITVKTRLGIDEQDSYSFLCEFIDTVSTSGGCQTFIIHARKAWLKGLLPKEN 200
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL Y Y L RDFP L +NGGI T+ + A L+ VM+GRAAY NP L
Sbjct: 201 RKIPPLNYGRVYQLKRDFPSLRLMINGGITTLKQARAHLQH-LDGVMIGRAAYNNPSILL 259
Query: 248 GHVDTAIYGAP 258
+D+ ++G P
Sbjct: 260 -RLDSELFGTP 269
>gi|452745003|ref|ZP_21944841.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
gi|452086843|gb|EME03228.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
Length = 325
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 158/260 (60%), Gaps = 8/260 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+ A LYTEM+ A II+ + +L L + P ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDL---LEYDPSENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L G+SP ENR I
Sbjct: 129 DAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLTGLSPKENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 187 PPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEI 244
Query: 251 DTAIYGAPSSGLTRRQVVEK 270
D+ I+ +T ++ VEK
Sbjct: 245 DSQIFNENRPLVTAKEAVEK 264
>gi|134095593|ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
gi|133739496|emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
Length = 338
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 166/274 (60%), Gaps = 6/274 (2%)
Query: 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQI 71
SVAPMMDWTD H R R I++H W YTEM+ +++ G++ R L F+ E+HP+ LQ+
Sbjct: 12 SVAPMMDWTDRHCRMFHRQITRHTWFYTEMVTTGALLH--GDVSRHLDFNHEEHPVALQL 69
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
GGS +LAK+ +L + YDEINLNCGCPS +V G FG LM + V + + +
Sbjct: 70 GGSEPADLAKSAKLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMNEAALVADCVKAMRD 128
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+ V+VK RIG+DD SY+ + DF+ V+ + FI+H+R A+L G+SP ENR IP
Sbjct: 129 AVQIDVTVKHRIGIDDIASYDFVRDFVGTVAE-AGCNTFIVHARNAVLKGLSPKENREIP 187
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251
PL+YE+ Y L +DFP L +NGGI T+ E++ L VM+GR AY NP Y + D
Sbjct: 188 PLRYEFAYQLKQDFPQLEIIINGGIKTLAEIDTHLVH-VDGVMLGREAYHNP-YLMSAFD 245
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 285
YG ++ +R QV+ Y A L +G +
Sbjct: 246 ARYYGDIAAPKSRAQVLHAMLPYIRAQLELHGKS 279
>gi|409394966|ref|ZP_11246092.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409395931|ref|ZP_11246956.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409119430|gb|EKM95813.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409120335|gb|EKM96684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
Length = 336
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 176/305 (57%), Gaps = 10/305 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R +S+HA LYTEM+ +I+ G+ R+L + +HP+ LQ
Sbjct: 20 FSVAPMMDWTDRHCRYFLRQLSRHALLYTEMVTTGALIH--GDAARYLRYDACEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA ++A A YDE+NLN GCPS +V + G LM P V + + +
Sbjct: 78 LGGSVPAELAACVKMAEAAGYDEVNLNVGCPSDRVQNN-MIGACLMGHPSLVADCVKAMR 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ + V+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP ENR +
Sbjct: 137 DSVGLEVTVKHRIGINGRDSYAELCDFVGQVRD-AGCRSFTVHARIAILEGLSPKENREV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L RDFPDL LNGGI T+DE A L VM+GR AY NP Y L V
Sbjct: 196 PPLRYDVAAQLKRDFPDLEIILNGGIKTLDECEAHLHT-FDGVMLGREAYHNP-YLLAQV 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + ++R Q + + Y + L + G + V + +L PG F+
Sbjct: 254 DQRLFGSSAPVISRAQALRAMRPYIEQHLASGGT----MHHVTRHVLGLGSGFPGARRFR 309
Query: 311 RKADA 315
+ A
Sbjct: 310 QMLSA 314
>gi|254362517|ref|ZP_04978621.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
gi|153094117|gb|EDN75017.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
Length = 325
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 158/260 (60%), Gaps = 8/260 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+ A LYTEM+ A II+ + +L L + P ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDL---LEYDPSENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L G+SP ENR I
Sbjct: 129 DAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLTGLSPKENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 187 PPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEI 244
Query: 251 DTAIYGAPSSGLTRRQVVEK 270
D+ I+ +T ++ VEK
Sbjct: 245 DSQIFNENRPLVTAKEAVEK 264
>gi|149907717|ref|ZP_01896464.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
gi|149809387|gb|EDM69316.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
Length = 330
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 184/330 (55%), Gaps = 11/330 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P FS+APM+DWTD H R RL++K+ LYTEM+ II+ +G+ +LA++ E+HP+
Sbjct: 12 PGRFSIAPMLDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIHGRGD---YLAYNKEEHPV 68
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGSN +LA++ +LA YDEINLN GCPS +V G FG LM +P V + +
Sbjct: 69 SLQLGGSNPIDLAQSAKLAQERGYDEINLNVGCPSDRVQS-GKFGACLMAEPTLVADCVK 127
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++P++VK RIG+DD DSY L FI V++ + + F +H+RKA L+G+SP EN
Sbjct: 128 AMQDVVDIPITVKTRIGIDDQDSYEFLQTFIDTVAA-TGCKDFTLHARKAWLSGLSPKEN 186
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IP L Y+ Y + +DFP L +NGG+ T+ E L VM+GR AY NP + L
Sbjct: 187 REIPELNYQRVYDIKQDFPALFIAINGGVKTLAETQLHL-GNVDGVMMGREAYHNP-FLL 244
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
+D +YG S +R E Y D + N + + + +L F PG
Sbjct: 245 SQIDELVYGGEKSIHSRHDYAEMMLPYID----NHIRNGGSLTHIYRHMLGLFLGLPGAR 300
Query: 308 LFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
+KR +E ++ +P S
Sbjct: 301 AWKRHLSEQGHKKGAGVEVVEAALLLVPKS 330
>gi|261494145|ref|ZP_05990648.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496014|ref|ZP_05992424.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308264|gb|EEY09557.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310311|gb|EEY11511.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 325
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 158/260 (60%), Gaps = 8/260 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+ A LYTEM+ A II+ + +L L + P ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDL---LEYDPSENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPAQLAHCAKLVAERGYAEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCIKAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+DD DSY LCDFI KV S FI+H+RKA L G+SP ENR I
Sbjct: 129 DAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQPYS--NDFIVHARKAWLTGLSPKENREI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RDFP L ++NGGI T++E+ L + VMVGR AYQNP LG +
Sbjct: 187 PPLDYDRVYQLKRDFPHLKISINGGIKTIEEIKQHL-QFVDGVMVGREAYQNP-SMLGEI 244
Query: 251 DTAIYGAPSSGLTRRQVVEK 270
D+ I+ +T ++ VEK
Sbjct: 245 DSQIFNENRPLVTAKEAVEK 264
>gi|416190467|ref|ZP_11615716.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|421560509|ref|ZP_16006367.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
gi|254670181|emb|CBA05275.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha153]
gi|325138888|gb|EGC61438.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|402340059|gb|EJU75263.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
Length = 336
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 178/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V+ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|170718234|ref|YP_001785255.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 2336]
gi|168826363|gb|ACA31734.1| TIM-barrel protein, yjbN family [Haemophilus somnus 2336]
Length = 328
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 187/328 (57%), Gaps = 22/328 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S++ LYTEM+ II+ + + LA+ ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRFFHRQFSRYTLLYTEMVTTGAIIHAKYD---HLAYDVSENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L + Y EINLN GCPS +V +G FG LM V E ++ +
Sbjct: 70 LGGSDPEKLQYCAKKGEERGYQEINLNVGCPSDRVQ-NGMFGACLMARAALVAECVNAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ N+PV+VK R+G+D+ DSY LCDFI KV ++ + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVNIPVTVKTRLGIDEFDSYEFLCDFIEKVHNIG-CQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L +DFP L ++NGGI T++E+ L VMVGR AYQNP LG++
Sbjct: 188 PPLNYERVYQLKKDFPHLLISINGGIKTLEEIQQHLNY-VDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ + +T RQ +E Y + L G Y N+ + + LL F G
Sbjct: 246 DQALFDPSCAIITPRQAIENMFPYIEQQLSQGVYLNH------IARHLLGAFQQCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFLEE 329
++R K+ A + + +F+EE
Sbjct: 300 WRRYMSENIHKSHAGVEVIEKALTFIEE 327
>gi|213970480|ref|ZP_03398608.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
gi|301383868|ref|ZP_07232286.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
Max13]
gi|302060592|ref|ZP_07252133.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
K40]
gi|213924798|gb|EEB58365.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
Length = 339
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 177/305 (58%), Gaps = 10/305 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
LP FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LPRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHD-AGCQSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD ++G+ + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAQVDQQLFGSVAPVISRHAALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR 311
F++
Sbjct: 309 RRFRQ 313
>gi|116252712|ref|YP_768550.1| tRNA-dihydrouridine synthase A [Rhizobium leguminosarum bv. viciae
3841]
gi|115257360|emb|CAK08455.1| putative tRNA-dihydrouridine synthase A [Rhizobium leguminosarum
bv. viciae 3841]
Length = 333
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 14/305 (4%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS+ A LYTEM+ A+ II+ G DR L +HP+
Sbjct: 6 PIFAVAPMIDWTDRHCRYFHRQISREALLYTEMVVADAIIH--GPRDRLLGHDAAEHPLA 63
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A ++A Y YDEINLN GCPS +V G FG LML P+ V E ++
Sbjct: 64 LQLGGSDPAKLAEAVKIAEPYFYDEINLNVGCPSDRVQS-GTFGACLMLTPEMVAECIAA 122
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ VPV+VKCRIGVD+ + L + I +V + IH+RKA L G+SP ENR
Sbjct: 123 MKRVATVPVTVKCRIGVDEQEPEQALPELITRVLD-AGADAIWIHARKAWLKGLSPKENR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYT 246
IPPL YE Y + + +PD+ +NGGI T+DE L AH VM+GRAAYQN
Sbjct: 182 EIPPLDYEIVYRMKQRWPDVFIGINGGIRTLDEAATHL---AHVDGVMLGRAAYQNA-AI 237
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L +D +GAP+S + ++ Y + + + G ++ V + ++ F PG
Sbjct: 238 LADIDQRFFGAPASEPDWEALRDRMMAYAERHIASGGR----LQHVARHMVGLFTGLPGA 293
Query: 307 GLFKR 311
+++
Sbjct: 294 RRYRQ 298
>gi|404377933|ref|ZP_10983033.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
gi|348615864|gb|EGY65372.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
Length = 327
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 166/271 (61%), Gaps = 17/271 (6%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDEFEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A L + Y EINLNCGCPS +V G FG LM +PK V + + + ++
Sbjct: 59 PDDLAQAARLGQQWGYKEINLNCGCPSERVQ-RGAFGACLMAEPKLVAQGVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTA 253
E Y L RDFP L LNGG+ T+++++A L AH VM+GR AY +P + + D
Sbjct: 177 EVVYQLKRDFPHLEILLNGGVQTLEQIDAHL---AHVDGVMIGREAYHHP-HLMAAFDAR 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
YGA + TR +V DA++G G
Sbjct: 233 YYGAGTEAPTRAEVE-------DAMIGYVGR 256
>gi|421554100|ref|ZP_16000050.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
gi|402333727|gb|EJU69026.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
Length = 336
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 178/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + + V+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|289627280|ref|ZP_06460234.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289650430|ref|ZP_06481773.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584664|ref|ZP_16659768.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330869475|gb|EGH04184.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 339
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 184/329 (55%), Gaps = 17/329 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +L DF+ KV + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELSDFVGKVHE-AGCESFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++ + + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFDSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR-------KADAAFQTCKTVKSFLE 328
F++ KA+ +FLE
Sbjct: 309 RRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|422683870|ref|ZP_16742126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331013200|gb|EGH93256.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 339
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 183/329 (55%), Gaps = 17/329 (5%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R R +SKHA LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA + LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACSRLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAYPQLVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +L DF+ KV + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELSDFVGKVHE-AGCESFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFPDL LNGGI T+D+ L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKSDFPDLEIVLNGGIKTLDQCGEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L HVD ++ + + ++R +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAHVDQQLFDSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR-------KADAAFQTCKTVKSFLE 328
F++ KA+ +FLE
Sbjct: 309 RRFRQLLSVDIHKAENPMLLLDQAAAFLE 337
>gi|113868264|ref|YP_726753.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha H16]
gi|113527040|emb|CAJ93385.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16]
Length = 345
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 160/262 (61%), Gaps = 6/262 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H R R +S+H WLYTEM+ +++ G++ R L F +HP+
Sbjct: 13 PRRVSVAPMMDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLH--GDVPRHLDFDAAEHPV 70
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA A +L + Y E+NLNCGCPS +V G FG LM +P+ V + +
Sbjct: 71 ALQLGGSEPADLAMAAKLGQQWGYAEVNLNCGCPSERVQ-RGAFGACLMAEPQLVADCVK 129
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D + Y+ + DF+ +V+ + FI+H+R A+L G+SP EN
Sbjct: 130 AMRDAVDIPVTVKHRIGIDKIEHYDFVRDFVGRVAE-AGCGTFIVHARNAILKGLSPKEN 188
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE Y L ++FP+L +NGGI + DEV A L VM+GR AY P Y L
Sbjct: 189 REIPPLRYEVAYQLKQEFPELEILINGGIVSYDEVAAHLEH-VDGVMIGREAYHQP-YVL 246
Query: 248 GHVDTAIYGAPSSGLTRRQVVE 269
+D YG S+ R VE
Sbjct: 247 AEMDARFYGDASAPAPSRLDVE 268
>gi|424895509|ref|ZP_18319083.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179736|gb|EJC79775.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 333
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 174/303 (57%), Gaps = 10/303 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS A LYTEM+ A+ II+ G DR L +HP+
Sbjct: 6 PIFAVAPMIDWTDRHCRYFHRQISGQALLYTEMVVADAIIH--GPRDRLLGHDAAEHPLA 63
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A ++A Y YDEINLN GCPS +V G FG LML PK V E ++
Sbjct: 64 LQLGGSDPAKLAEAVKIAEPYGYDEINLNVGCPSDRVQS-GTFGACLMLTPKTVAECIAA 122
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ A VPV+VKCRIGVD+ + L + I V + IH+RKA L G+SP ENR
Sbjct: 123 MKAVATVPVTVKCRIGVDEQEPEQALPELITHVLD-AGADAIWIHARKAWLKGLSPKENR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
IPPL YE Y + + +P++ +NGG+ T+DE A L VM+GRAAYQN L
Sbjct: 182 EIPPLDYEIVYRMKQRWPNVVIGINGGVRTLDEAAAHLEH-VDGVMLGRAAYQNA-AILA 239
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +GAP++ + ++ Y + + G ++ V + ++ F PG
Sbjct: 240 EVDQRFFGAPAAEPDWEGLRDRMMAYAERHIAGGGR----LQHVARHMVGLFTGLPGARR 295
Query: 309 FKR 311
+++
Sbjct: 296 YRQ 298
>gi|254877424|ref|ZP_05250134.1| tRNA-dihydrouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843445|gb|EET21859.1| tRNA-dihydrouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 324
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 186/319 (58%), Gaps = 9/319 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM+DWTD HYR + RLI+K LYTEM+ II+ GN D L ++PE++P+ LQ
Sbjct: 8 ICIAPMLDWTDKHYRYMMRLITKQTMLYTEMITLNAIIH--GNKDFLLKYNPEENPVTLQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG ++ +LA Y+EIN+N GCPS +V G FG+SLM +P+ V + + +
Sbjct: 66 LGGCVPEDFITCGKLAQNLGYNEININVGCPSERVK-KGNFGLSLMAEPELVADCVKAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
N +VP+SVKCRIG D +DSY +L +F+ K + + IH+RK L+G+SP ENRTI
Sbjct: 125 DNLDVPISVKCRIGYDHNDSYEELYNFVNKQVQ-AGVDYLCIHARKGWLSGLSPKENRTI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
P LKY+ Y + +DFP+L +NGG+ T+++ L K VM+GR AY NP
Sbjct: 184 PELKYDVVYNIKKDFPNLELGINGGVTTIEDTQEHL-KYVDSVMIGREAYHNPM-LFKDF 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D Y P + ++ +V + Y L + N + + ++ K L+ F+ P +F+
Sbjct: 242 DNLFYNQPINDISPLEVAYEMAEYIKIQLNSDPNMK--LNNITKHTLNLFNGLPNAKVFR 299
Query: 311 RK-ADAAFQTCKTVKSFLE 328
R ++ A + V +FL+
Sbjct: 300 RYLSENATKKDANVDTFLK 318
>gi|94310927|ref|YP_584137.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
gi|93354779|gb|ABF08868.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
Length = 351
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 165/272 (60%), Gaps = 7/272 (2%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H RT R +S+H WLYTEM+ +++ G++ R L FS + P+
Sbjct: 22 PRRISVAPMMDWTDRHCRTFHRALSQHTWLYTEMVTTGALLH--GDVARHLDFSAAEQPV 79
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA+A +L + Y EINLNCGCPS +V G FG LM +P+ V + +
Sbjct: 80 ALQLGGSEPVDLAQAAKLGEQWGYKEINLNCGCPSERVQ-RGAFGACLMAEPQLVADCVR 138
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ +VPV+VK RIG+D + Y + DF+ ++ + FI+H+R A+L G+SP EN
Sbjct: 139 AMRDVVSVPVTVKHRIGIDTIEHYGFVRDFVGTIAE-AGCDIFIVHARNAILKGLSPKEN 197
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE Y L R+FP L +NGG+ + E++ LR VM+GR AY +P++ L
Sbjct: 198 REIPPLRYEVAYELKREFPHLEILINGGVVSYGEIDEHLRH-VDGVMIGRQAYHDPYF-L 255
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIY-GDAI 278
+D YG + +TR Q Y GD +
Sbjct: 256 SEMDARFYGGTAPIVTREMAELTMQAYIGDLV 287
>gi|56697231|ref|YP_167596.1| tRNA-dihydrouridine synthase A [Ruegeria pomeroyi DSS-3]
gi|56678968|gb|AAV95634.1| tRNA-dihydrouridine synthase A [Ruegeria pomeroyi DSS-3]
Length = 344
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 185/347 (53%), Gaps = 12/347 (3%)
Query: 5 QYLPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
Q + PW S APMMDWTD H R L RL+S+ LYTEM+ A ++ +G L +S E
Sbjct: 6 QNIVPWRMSCAPMMDWTDRHCRYLHRLLSRQTLLYTEMVTAPALV--RGGALHLLEYSVE 63
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ + LA+A L YDEINLNCGCPS +V G FG LM P V
Sbjct: 64 EHPVALQLGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQS-GTFGAVLMKHPGLVA 122
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ + +V V+VKCRIGVDD D L +F+ +++ R IIH+RKA L G+S
Sbjct: 123 DCVTAMREAVDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQR-VIIHARKAWLQGLS 181
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL Y+ + + FP + ++NGGI+T+ A L G VM+GRAAY P
Sbjct: 182 PKENRDIPPLDYDLVHRMKARFPGMHISINGGIDTLAAARAHLDAGLDGVMIGRAAYHQP 241
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
L D IYG ++ V Y +A L T G + + + +L F
Sbjct: 242 ADILCKADPLIYGTGTAS-DPVTAVRAMLPYIEAHLATGGR----LHQITRHMLGLFAGR 296
Query: 304 PGNGLFKRKADAAFQTCKTVKSFLEETI--VAIPDSVLDSPIEEAPR 348
PG ++R +E + VA ++P++ APR
Sbjct: 297 PGARGWRRMLSEGAVRPGAGPELVEAALDQVAGLWHTSETPLDPAPR 343
>gi|323144476|ref|ZP_08079078.1| tRNA dihydrouridine synthase A [Succinatimonas hippei YIT 12066]
gi|322415754|gb|EFY06486.1| tRNA dihydrouridine synthase A [Succinatimonas hippei YIT 12066]
Length = 337
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/304 (44%), Positives = 182/304 (59%), Gaps = 17/304 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+D TD+ +R LARL SK + LYTEM+AA+ +I+ + L L F E+ P VLQ
Sbjct: 13 FSVAPMVDVTDSVFRRLARLFSKKSMLYTEMIAADAVIHGKNYL---LEFHDEELPCVLQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA A ++ + Y EINLN GCPS KV G FG LM P + + + +
Sbjct: 70 LGGSDPKKLAAAAKIGAGFGYTEINLNAGCPSDKVQS-GNFGAVLMKTPDLIADCVKAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYK-VSSLSPT--RHFIIHSRKALLNGISPAEN 187
+VPV+VK RIGVD+ DS DF K V +++ T RH I+H+RKA LNG+SP EN
Sbjct: 129 DAVSVPVTVKTRIGVDEDDS----VDFTLKLVETIAATGCRHVILHARKAWLNGLSPKEN 184
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
RTIPPL YE Y + FP+L T+NGGI T+D V L++ VM+GRA NP + L
Sbjct: 185 RTIPPLDYERVYLVKSAFPNLRITINGGITTIDAVKDQLKR-VDGVMLGRAIIDNP-FIL 242
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
VD+ I+G+ +R +++ K D P V +M+ LL F+S PG
Sbjct: 243 SKVDSEIFGSIEPMPSREELLYKAV---DLAAKIKAEGIP-VHHLMRHLLGLFNSCPGAR 298
Query: 308 LFKR 311
L++R
Sbjct: 299 LYRR 302
>gi|383933677|ref|ZP_09987121.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
gi|383705283|dbj|GAB57212.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
Length = 331
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 174/301 (57%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S+HA LYTEM+ II+ G+ +LAF+ ++HP+VLQ
Sbjct: 11 FSVAPMLDWTDKHCRYFHRLLSRHAVLYTEMVTTGAIIHGSGD---YLAFNEQEHPLVLQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +A +LA YD +N+N GCPS +V +G FG LM P V + + +
Sbjct: 68 LGGSEPAEMAHCAKLAEQRGYDAVNINVGCPSDRVQ-NGMFGACLMAQPARVADCVKAMQ 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD D Y L DF+ V++ + FIIH+RKA L G+SP ENR I
Sbjct: 127 DAVSIPVTVKTRIGIDDSDDYQFLQDFVSMVAA-AGCEQFIIHARKAWLKGLSPKENREI 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y L ++FP L +LNGGI T+ + L+ VMVGR AY NP L V
Sbjct: 186 PPLNYPRVQQLKQEFPQLNISLNGGIKTLQQAKEQLQY-LDGVMVGREAYTNP-LLLSEV 243
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+ IY + LT QVV + Y + + G H + + +L F PG ++
Sbjct: 244 DSLIYADTTLPLTPEQVVLQMLPYIEQQM-QQGARFWH---IARHMLGLFQGRPGARQWR 299
Query: 311 R 311
R
Sbjct: 300 R 300
>gi|417846290|ref|ZP_12492299.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
gi|341952774|gb|EGT79293.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
Length = 327
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 184/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTLHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKANLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----SQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T F+E
Sbjct: 302 RYLSENAFKQGAGVEVVETALHFVE 326
>gi|261415030|ref|YP_003248713.1| yjbN family TIM-barrel protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789988|ref|YP_005821111.1| tRNA-dihydrouridine synthase A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371486|gb|ACX74231.1| TIM-barrel protein, yjbN family [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326032|gb|ADL25233.1| tRNA-dihydrouridine synthase A [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 345
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 157/246 (63%), Gaps = 5/246 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APM+D TD H R RL+SKH LY+EM+ + +++ + N D FL P +HP VLQ
Sbjct: 9 LSIAPMLDCTDRHERYFLRLLSKHILLYSEMVVSTGLLHCE-NKDLFLGHEPFEHPAVLQ 67
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA A++L A + E+NLNCGCPS +V +G FG LM + V + +
Sbjct: 68 LGGSNPADLASASKLVEAAGFSEVNLNCGCPSDRVQ-NGNFGACLMKEKNVVADCFKAMQ 126
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PVS+KCRIGVDD DS+ DFI V + + FI+H+RKA L G+SP ENR +
Sbjct: 127 DAVSIPVSIKCRIGVDDLDSWEFFTDFIQTVRD-AGCKIFIVHARKAWLKGLSPKENREV 185
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE+ + L + P+L ++NGGI T+D++ L K VMVGR AY+NPW+ L
Sbjct: 186 PPLHYEFVHRLKAEMPELNLSINGGIKTLDQIEEQL-KDLDGVMVGREAYENPWF-LHDA 243
Query: 251 DTAIYG 256
D I+G
Sbjct: 244 DARIFG 249
>gi|225075955|ref|ZP_03719154.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
gi|224952670|gb|EEG33879.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
Length = 319
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 150/228 (65%), Gaps = 4/228 (1%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD HYR +AR I+++ WLY+EM+ + ++Y G+ DRFL+F+ + P+ LQ+GGS+
Sbjct: 1 MLDWTDRHYRFMARQITRNTWLYSEMVNSGAVVY--GDKDRFLSFNEGEQPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA A + A Y Y+E+NLNCGCPSP+V G FG LM D V + ++ + +
Sbjct: 59 PHDLAIAAKAAETYGYNEVNLNCGCPSPRVQ-KGAFGACLMNDVDLVADCLNAMQDAVEI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIGVD Y + DF+ + + R +I+H+R A L+G+SP ENR +PPLKY
Sbjct: 118 PVTVKHRIGVDRQTEYQVVADFVGMLREKTACRTYIVHARNAWLDGLSPKENREVPPLKY 177
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
EY Y L ++FPDL +NGGI T +E+ L K VM+GR AY NP
Sbjct: 178 EYVYRLKQEFPDLEILINGGITTNEEIAEHL-KFVDGVMIGREAYHNP 224
>gi|158423257|ref|YP_001524549.1| tRNA-dihydrouridine synthase A [Azorhizobium caulinodans ORS 571]
gi|158330146|dbj|BAF87631.1| dihydrouridine synthase TIM-barrel protein [Azorhizobium
caulinodans ORS 571]
Length = 338
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APMM+WTD H R R +S+ AWLYTEM+ A II+ G+ R L +S +HP+V+Q
Sbjct: 9 FSIAPMMEWTDRHCRAFHRTLSRRAWLYTEMVTAPAIIH--GDRARLLGYSQAEHPVVVQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+A + + YDEINLN GCPS +V G G FG LM DP V E ++ +
Sbjct: 67 LGGSNPALLAEAARICADFGYDEINLNVGCPSDRVKG-GNFGACLMRDPALVAECVAAMR 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VKCRIGVDD D L V + R I+H+RKA L G+SP ENR I
Sbjct: 126 AAVSIPVTVKCRIGVDDQDVEEALDALADAVLAAGCAR-LIVHARKAWLKGLSPKENREI 184
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ + L P + LNGG+ T+++ AA G VM+GRAAYQ+P L V
Sbjct: 185 PPLDYDRVHRLKARLPHVPIELNGGLVTLEDARAA-GAGLDGVMLGRAAYQDPDLLL-EV 242
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + + ++ Y A L G + D+ + +L F PG ++
Sbjct: 243 DAQVHGETPPHADAFEAIAAFEPYIAAHLEAGGR----LHDITRHMLGLFGGRPGARTYR 298
Query: 311 R 311
R
Sbjct: 299 R 299
>gi|304415193|ref|ZP_07395906.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
gi|304282951|gb|EFL91401.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
Length = 344
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 181/315 (57%), Gaps = 19/315 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K LY+EM+ II+ + + +LA+S + HP+VLQ
Sbjct: 29 FSVAPMLDWTDRHCRYFHRLLTKQTLLYSEMVTTGAIIHGKAD---YLAYSEQDHPVVLQ 85
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L Y+EINLN GCPS +V +G FG LM + V + + +
Sbjct: 86 LGGSDPKILADCAKLGQQRGYNEINLNIGCPSDRVQ-NGRFGACLMGEADLVADCIKAMN 144
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D HDSY LCDF+ +++ FIIH+RKA L+G+SP ENR +
Sbjct: 145 DGVSIPVTVKTRIGIDSHDSYEFLCDFVDTIANKGGCHIFIIHARKAWLSGLSPKENREV 204
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T+++ L K VM+GR AYQNP L V
Sbjct: 205 PPLNYPRVYQLKRDFPQLTIVINGGITTLEDAADHL-KYVDGVMIGREAYQNP-AILAEV 262
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ ++ + V++ Y + L + G H + + +L F PG ++
Sbjct: 263 DRKLFDPQAAITDKVAVIKALYPYIEQEL-SRGARLGH---ITRHILGLFQGTPGARQWR 318
Query: 311 R---------KADAA 316
R +ADAA
Sbjct: 319 RYLSEHAHQPRADAA 333
>gi|121635516|ref|YP_975761.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis FAM18]
gi|385340718|ref|YP_005894590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|416176601|ref|ZP_11609712.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|416200628|ref|ZP_11619688.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|416211980|ref|ZP_11621617.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|433466452|ref|ZP_20423914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|433491850|ref|ZP_20448950.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|433493933|ref|ZP_20451008.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|433496113|ref|ZP_20453161.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|433498198|ref|ZP_20455213.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|433500132|ref|ZP_20457122.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|433502381|ref|ZP_20459351.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
gi|120867222|emb|CAM10991.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|325132903|gb|EGC55580.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|325143034|gb|EGC65386.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|325145143|gb|EGC67425.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|325198962|gb|ADY94418.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|432204841|gb|ELK60875.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|432230251|gb|ELK85928.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|432231724|gb|ELK87382.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|432236479|gb|ELK92086.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|432237219|gb|ELK92817.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|432237319|gb|ELK92914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|432243055|gb|ELK98570.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
Length = 336
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 179/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRHLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG S + +V+ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|255264528|ref|ZP_05343870.1| tRNA-dihydrouridine synthase A [Thalassiobium sp. R2A62]
gi|255106863|gb|EET49537.1| tRNA-dihydrouridine synthase A [Thalassiobium sp. R2A62]
Length = 330
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 168/298 (56%), Gaps = 15/298 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R S A LYTEM+ A I+ +G+ LAF P + P+ LQ
Sbjct: 13 LSVAPMMDWTDRHCRYFHRQFSSQALLYTEMVTAPAIV--RGDARHLLAFDPAEQPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG++ LA+A + Y E+NLNCGCPS +V G FG M P V E S +
Sbjct: 71 LGGADPQQLAQAARIGADEGYPEVNLNCGCPSDRVQS-GAFGAIHMTTPDLVAEICSAMI 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++ ++VKCRIGVDD D + L F+ K+ + + R IH+RKA L G+SP ENR I
Sbjct: 130 AASHAEITVKCRIGVDDQDPHEVLPTFLTKIRA-AGVRRVTIHARKAWLQGLSPKENRDI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + + +FPDL ++NGGI ++DE L +G VM+GRAAY P L
Sbjct: 189 PPLDYPLVHQMKAEFPDLHISINGGIASLDEAKIHLNQGLDGVMIGRAAYHTPAAILTDA 248
Query: 251 DTAIYGAPSSGLTRR--QVVEKYQIY-GDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
D I+G G TR +VV++ + Y D I G R H V + +L F +PG
Sbjct: 249 DQMIWG---QGTTRSSFEVVDRMKPYIADHI---AGGGRMH--HVTRHMLGLFSGQPG 298
>gi|104782703|ref|YP_609201.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
gi|95111690|emb|CAK16414.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
Length = 333
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R RL+SKHA LYTEM+ +++ + RFL +HP+ LQ
Sbjct: 17 FSVAPMMDWTDRHCRFFLRLLSKHALLYTEMVTTGALLHNDAH--RFLRHDDSEHPLALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA LA YDE+NLN GCPS +V + G LM P V + + +
Sbjct: 75 LGGSVPADLAACARLAQEAGYDEVNLNVGCPSDRVQNN-MIGACLMGHPALVADCVKAMQ 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP ENR I
Sbjct: 134 DAVSIPVTVKHRIGINGRDSYAELCDFVGQVRD-AGCRSFTVHARIAILEGLSPKENREI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L DFPDL LNGGI T++E L + VM+GR AY NP Y L V
Sbjct: 193 PPLRYDVAAQLKADFPDLELVLNGGIKTLEECRTHL-ETFDGVMLGREAYHNP-YLLAEV 250
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ ++R + + K + Y A + + G + + + +L PG F+
Sbjct: 251 DQQLFGSSEPVISRAEAMAKLRPYIVAHMESGGA----MHHITRHILGLGQGFPGARRFR 306
Query: 311 RKADAAFQTCKTVKSFLEET 330
+ A T + L++
Sbjct: 307 QLLSADIHKTDTPLAVLDQA 326
>gi|386266637|ref|YP_005830129.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
gi|309973873|gb|ADO97074.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
Length = 327
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 183/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK R G+D+ DSY LCDFI KV + FIIH+RKA L+G+S ENR I
Sbjct: 129 SAVKIPVTVKTRTGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSAKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYARVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + V+ Y + L N H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVQSMLPYIEQQL----NQGIHLNHIVRHMLGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGVEVIETALSFVE 326
>gi|378823635|ref|ZP_09846245.1| tRNA dihydrouridine synthase A [Sutterella parvirubra YIT 11816]
gi|378597555|gb|EHY30833.1| tRNA dihydrouridine synthase A [Sutterella parvirubra YIT 11816]
Length = 352
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 177/311 (56%), Gaps = 12/311 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWTD H R R +SK A LYTEM+ I++ GN ++ L F+ +HP+ LQ
Sbjct: 31 FTVAPMLDWTDRHCRVFHRSLSKRARLYTEMVTTGAILF--GNREKLLGFTDVEHPVALQ 88
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ ++LAK+ +A+ + YDE NLNCGCPS +V G FG LM +PK V E +A
Sbjct: 89 LGGSDPEDLAKSVRIASDFGYDEYNLNCGCPSERVQ-KGSFGACLMKEPKLVAECWQAMA 147
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T+ PV+VK RIGVDD S++ + +F+ + + R F++H+R A L G+SP ENR +
Sbjct: 148 EVTDRPVTVKHRIGVDDDSSWDFVSNFVSTLYEVG-CRVFVVHTRAAWLKGLSPKENREV 206
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL E + L + PD NG I V+ + G VMVGRAAY NPW G V
Sbjct: 207 PPLMRERAFELKKALPDAVIVANGQIADVETAKGLIDGGLDGVMVGRAAYHNPWILTG-V 265
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRP-HVRDVMKPLLHFFHSEPGNGLF 309
D ++G + +R VV Y L + + P +R + ++ PG +
Sbjct: 266 DETLFGDAAMEKSRYDVVLSMTEY----LKAHCADDPLAIRATARHMIGLAQGLPGARAW 321
Query: 310 KRKAD--AAFQ 318
+R+ AAF+
Sbjct: 322 RRELSDPAAFR 332
>gi|334703229|ref|ZP_08519095.1| tRNA-dihydrouridine synthase A [Aeromonas caviae Ae398]
Length = 328
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 180/301 (59%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+++ LYTEM+ II+ +G+ +L +S ++HP+ LQ
Sbjct: 6 FSIAPMLDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGD---YLGYSEQEHPLALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA+ LA YDE+NLN GCPS +V +G FG LM +P V + + +
Sbjct: 63 LGGSNPADLARCARLAEERGYDEVNLNVGCPSDRVQ-NGRFGACLMGEPALVADCVKAMR 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI +V + FI+H+RKA L+G+SP ENR I
Sbjct: 122 DVVDIPVTVKTRIGIDEQDSYEFLQAFIEQVRD-AGCDTFIVHARKAWLSGLSPKENREI 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + +D+PDLT +NGG+ ++++ L+ VM+GR AYQNP Y L V
Sbjct: 181 PPLDYPRVYRVKQDYPDLTIAINGGVTSLEQTLEHLQH-LDGVMMGREAYQNP-YILAQV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G + +R +VV Y + L GN H + + +L F + G ++
Sbjct: 239 DNLVFGENRAVPSRHEVVRMMLPYIEQELAK-GNYLSH---MTRHMLGLFQNMQGARAWR 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|114569505|ref|YP_756185.1| tRNA-dihydrouridine synthase A [Maricaulis maris MCS10]
gi|114339967|gb|ABI65247.1| tRNA-U16,U17-dihydrouridine synthase [Maricaulis maris MCS10]
Length = 353
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 172/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R R++++ A LYTEM + II+ G+ R + F +HP+ +Q
Sbjct: 33 LSVAPMMDWTDRHCRAFHRVLTRRALLYTEMAVDKAIIH--GDTARLIGFDAAEHPVAIQ 90
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A++ A + Y EINLN GCPS +V G FG LM +P V + ++ +
Sbjct: 91 LGGSDPGELAQASKTAEGFGYCEINLNVGCPSDRVQS-GRFGACLMQEPDLVADCVAAMQ 149
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VKCRIGVDD + L + V++ T F +H+RKA L G+SP ENR++
Sbjct: 150 DAVSVPVTVKCRIGVDDQEPEQALFTLVDTVAARGVT-SFAVHARKAWLKGLSPKENRSV 208
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L LNGG+ +D + G M+GRAAY PW L V
Sbjct: 209 PPLDYALVHRLKAERPELEIILNGGLQDLDHAISE-STGLDGAMIGRAAYHTPWI-LARV 266
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D+A++G TR Q + ++ Y A L G + D+ + ++ + EPG ++
Sbjct: 267 DSAVFGETDPVATRSQALAAFRPYIAACLDEGGR----LHDITRHMMGLYAGEPGARQWR 322
Query: 311 R 311
R
Sbjct: 323 R 323
>gi|73541705|ref|YP_296225.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha JMP134]
gi|72119118|gb|AAZ61381.1| tRNA-U16,U17-dihydrouridine synthase [Ralstonia eutropha JMP134]
Length = 341
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 183/329 (55%), Gaps = 16/329 (4%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD H RT R +S+H WLYTEM+ +++ G++ R L F+ +HP+
Sbjct: 5 PRRISVAPMMDWTDRHCRTFHRQLSRHTWLYTEMVTTGALLH--GDVPRHLDFNAAEHPV 62
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS +LA A L + Y E+NLNCGCPS +V G FG LM +P+ V + +
Sbjct: 63 ALQLGGSEPADLAVAARLGQQWGYAEVNLNCGCPSERVQ-RGAFGACLMAEPQLVADCVK 121
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ ++PV+VK RIG+D + Y + DF+ V+ + FI+H+R A+L G+SP EN
Sbjct: 122 AMRDAVSIPVTVKHRIGIDKVEHYGFVRDFVGTVAQ-AGCETFIVHARNAILKGLSPKEN 180
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R IPPL+YE Y L +DFP L +NGGI + DE+ + L + VM+GR AY P Y L
Sbjct: 181 REIPPLRYEVAYQLKQDFPQLEILINGGIVSYDEMASHL-ENVDGVMIGREAYHQP-YVL 238
Query: 248 GHVDTAIYGAPSSGLTRRQVVE-KYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
+D YG + + R VE Q Y +G ++ V + +L + G
Sbjct: 239 AEMDGRFYGDAEAPVRSRLDVELAMQRY----IGELVERGGYMGAVTRHMLGLYRGVAGG 294
Query: 307 GLFKR-----KADAAFQTCKTVKSFLEET 330
++R K +A +T V + EE
Sbjct: 295 RGWRRVLSDAKRMSAARTHANVDALFEEA 323
>gi|429764782|ref|ZP_19297091.1| tRNA dihydrouridine synthase A [Clostridium celatum DSM 1785]
gi|429187550|gb|EKY28462.1| tRNA dihydrouridine synthase A [Clostridium celatum DSM 1785]
Length = 343
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 23/343 (6%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P S+APM+D + H+R RL++K A LYTEM+ A+ II G+LDR L F E+ P+
Sbjct: 12 PKISIAPMVDKSHRHFRYFCRLMNKGALLYTEMVTAQAII--NGDLDRILYFREEEGPVA 69
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQI S+ ++ KA +LA +YNY EINLNCGCPS +V+G+ G +LM D V E +S
Sbjct: 70 LQIAASSSEDAYKAVKLAESYNYSEINLNCGCPSDRVSGN-LMGAALMADKNLVYEILSA 128
Query: 129 IAANTNVPVSVKCRIGVDDHD------------SYNQLCDFIYKVSSLSPTRHFIIHSRK 176
+ TN PV++K RIG+D D Y L +F+ VS P R + +H+R
Sbjct: 129 MKEATNKPVTIKHRIGIDGTDVIEGKNNKIIMEGYEDLLEFLDTVSKARPDR-YTVHARS 187
Query: 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236
A+L G+SP +NR IPPL Y+ Y L +DF L +NGG T++ ++ AL K VM+G
Sbjct: 188 AILKGLSPKDNREIPPLDYDMVYRLKKDFEYLNIEINGGFKTLESISDALTK-VDGVMIG 246
Query: 237 RAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL 296
RA+Y++ Y L +++ I + ++R ++++ Y Y L N V + PL
Sbjct: 247 RASYED-CYLLANLNR-INDKNAKIISRGEIIKSYIPYVKEELEKGSN----VHSLAAPL 300
Query: 297 LHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVL 339
F + G+ FK+ ++ +T+ L ET++ +P +L
Sbjct: 301 QSLFQGQKGSRKFKQLLSSSNVKKETLVEILNETLIVMPQDIL 343
>gi|425471121|ref|ZP_18849981.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9701]
gi|389883063|emb|CCI36544.1| tRNA-dihydrouridine synthase A [Microcystis aeruginosa PCC 9701]
Length = 331
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD+TD H+R R IS+ LYTEM+ T+ + G+ D+ L FS + P+ LQ
Sbjct: 5 LSVAPMMDYTDRHFRYFLRQISRRPLLYTEMIT--TMAIKHGDRDKLLGFSLAEKPLALQ 62
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+ ++A YDE+NLN GCPS +V G FG LM +P+ V +S +
Sbjct: 63 LGGDNPYLLAECAKIAEDMGYDEVNLNVGCPSSRVK-EGNFGACLMANPELVARGISAMN 121
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY + +F+ V+ R F IH+RKA L G+SP ENRT+
Sbjct: 122 QAVSIPVTVKQRIGIDDQDSYENMANFVRIVADAGCQR-FTIHARKAWLQGLSPKENRTV 180
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ Y L FP L +NGGI +++ L+ VM+GRAAY NP Y V
Sbjct: 181 PPLRYDDVYRLKNQFPHLFIEINGGIINLEQARQHLQL-VDAVMIGRAAYDNP-YLFATV 238
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + TR +V++K Y D + + + + K LL F +PG +K
Sbjct: 239 DRDFYGESVTPPTREEVIKKMLPYID----EWVSKGYKLHQISKHLLQLFAGQPGTKAWK 294
Query: 311 R 311
R
Sbjct: 295 R 295
>gi|385327705|ref|YP_005882008.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|416186449|ref|ZP_11613729.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
gi|308388557|gb|ADO30877.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|325136923|gb|EGC59520.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
Length = 336
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 181/306 (59%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++AWLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRHLSVAPMLDWTDRHYRYMARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A AY Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + + V+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG ++ + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDTANPIGYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|261365796|ref|ZP_05978679.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
gi|288565649|gb|EFC87209.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
Length = 334
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 167/269 (62%), Gaps = 6/269 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR LAR I+++ WLY+EM+ + I+Y G+ DRFL F+ +
Sbjct: 6 LPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMVNSGAIVY--GDKDRFLMFNEGEQ 63
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 64 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVMLVADC 122
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + +PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 123 LNAMQDAVQIPVTVKHRIGVDRQIEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 182
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 183 ENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 240
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIY 274
+ D YG S + +V++ Y
Sbjct: 241 VMHEWDRLFYGDTRSPIEYADLVQRLYTY 269
>gi|374574675|ref|ZP_09647771.1| tRNA dihydrouridine synthase A [Bradyrhizobium sp. WSM471]
gi|374422996|gb|EHR02529.1| tRNA dihydrouridine synthase A [Bradyrhizobium sp. WSM471]
Length = 331
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 167/301 (55%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R R +++ A LYTEML II+ G+ +R L F +HP+ LQ
Sbjct: 8 FSVAPMMDWTDRHCRVFHRHLTRRALLYTEMLTTGAIIH--GDRERLLGFDLVEHPVALQ 65
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA A + + YDEINLN GCPS +V G FG LM +P V + +
Sbjct: 66 LGGSDPRELALAARIGEEFGYDEINLNVGCPSDRVK-DGRFGACLMAEPDLVARCVEAMK 124
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
VPV+VKCRIG+DD D L + + V S I+H+RKA L+G+SP ENR I
Sbjct: 125 GAVAVPVTVKCRIGIDDQDPEVALDNLAHAVVD-SGCDALIVHARKAWLSGLSPKENRDI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L R PD+ +NGGI VDE A L M+GRAAYQ PW L V
Sbjct: 184 PPLDYDRVYRLKRAMPDVPVIINGGIPGVDEARAHLDH-VDGAMLGRAAYQEPWRLLS-V 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
DT I+G + + + +E Y + L R H + + + FH+ PG F+
Sbjct: 242 DTDIFGEAAPLASMQDALEAMMPYIEQQLAR--GTRLH--SMTRHFVGAFHAVPGARAFR 297
Query: 311 R 311
R
Sbjct: 298 R 298
>gi|359453806|ref|ZP_09243109.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
gi|358049122|dbj|GAA79358.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
Length = 310
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 11/321 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNKHEGPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ + ++
Sbjct: 58 PKALAQCAKLAGERGYDEINLNVGCPSDRVK-NGRFGACLMAEPQLVAECVAAMKNEVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +PPL Y
Sbjct: 117 PVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDY 175
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +D+P L +LNGG+ T+++ L+ VM+GR AY NP + L VD IY
Sbjct: 176 PRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIY 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADA 315
G ++ +R VV Y + + G N H + + +L F +PG F+R
Sbjct: 234 GDTANTQSRHDVVRSMYSYIEEEM-RLGANFWH---IARHMLGIFQGQPGARGFRRHLSE 289
Query: 316 AFQTCKTVKSFLEETIVAIPD 336
+ + S +++ + +P+
Sbjct: 290 SGHGKQADLSVMDKALSFVPE 310
>gi|238752153|ref|ZP_04613635.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
gi|238709626|gb|EEQ01862.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
Length = 348
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 173/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K A LYTEM+ II+ +G+ +LA+S + HP+ LQ
Sbjct: 28 FSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKGD---YLAYSEQDHPVALQ 84
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V + + +
Sbjct: 85 LGGSDPQALAHCAKLAELRGYNEINLNVGCPSDRVQ-NGRFGACLMAEASLVADCIKAMR 143
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP ENR +
Sbjct: 144 DAVTIPVTVKTRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENREV 203
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP L V
Sbjct: 204 PPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNP-SILTQV 261
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ + + Q +E Y + L + ++ + + +L F PG ++
Sbjct: 262 DRELFDPNAPVIDPVQAIEALYPYIEQEL----SRGAYLGHITRHILGIFQGIPGARQWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|254415230|ref|ZP_05028992.1| TIM-barrel protein, yjbN family [Coleofasciculus chthonoplastes PCC
7420]
gi|196178036|gb|EDX73038.1| TIM-barrel protein, yjbN family [Coleofasciculus chthonoplastes PCC
7420]
Length = 338
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 178/326 (54%), Gaps = 10/326 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMMD TD H+R R I++ LYTEM+ + II+ G+ DR L FS E+ P+VLQ
Sbjct: 21 LSIAPMMDRTDRHFRYFMRQITRRTLLYTEMVTSAAIIH--GDRDRLLGFSAEEKPLVLQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N LA+ +A YD+INLN GCPS +V +G FG LM P+ V + +
Sbjct: 79 VGGDNPLELAECARIAEGMGYDQINLNVGCPSDRVQ-NGNFGACLMAQPERVARGVEAMI 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D+ D Y + +F+ ++ S + +HF +H+RKA L G+SP ENRT+
Sbjct: 138 KAVTIPVTVKHRIGIDECDRYEDMANFV-RIVSEAGCQHFSVHARKAWLQGLSPKENRTV 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L ++FP L +NGG ++++V L K VM+GRAAY NP Y
Sbjct: 197 PPLRYSDVHRLKQEFPQLFIEINGGFTSLEQVQEQL-KFVDAVMIGRAAYDNP-YLFAQA 254
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+ TR QV E Y D + + + + +L F +PG+ +K
Sbjct: 255 DCQIFEEECIPPTRHQVAEGMLDYIDHWVA----KGLKLNKITRHILQLFSGQPGSRAWK 310
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPD 336
R + E + +PD
Sbjct: 311 RHLTEKSCIPGVGSEVVREALAKVPD 336
>gi|302848098|ref|XP_002955582.1| hypothetical protein VOLCADRAFT_43118 [Volvox carteri f.
nagariensis]
gi|300259205|gb|EFJ43435.1| hypothetical protein VOLCADRAFT_43118 [Volvox carteri f.
nagariensis]
Length = 320
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 185/311 (59%), Gaps = 16/311 (5%)
Query: 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL 76
MDWTD H+R LARL+S+ WL+TEM+ +TI++ Q NLD+FL F PEQ P+VLQ+GGS+
Sbjct: 10 MDWTDMHFRQLARLLSRRTWLWTEMVVDKTILHTQ-NLDKFLWFPPEQRPLVLQLGGSDP 68
Query: 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136
LA A A Y YDEINLNCGCPS +VA GCFG +LM+ P V + +A
Sbjct: 69 ATLAAAAARAVEYGYDEINLNCGCPSDRVASAGCFGAALMMRPHLVARCTAAMAEAMKGD 128
Query: 137 ---VSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
V + C G + ++ C I +++ SP ++ G+SP +NRT+PP
Sbjct: 129 LRLVMMTCYPGGRYLGAIFSVRCCTI--LTARSPPPLPPGVRPPWVVQGLSPHQNRTVPP 186
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVN------AALRKGAHHVMVGRAAYQNPWYT 246
L++++ +AL RDFP L F+LNGG+ E G VM+GR AY +PW
Sbjct: 187 LRHQWAWALARDFPHLQFSLNGGVLNCHEARFQGLSVGGNGGGIVGVMIGRGAYNDPWGC 246
Query: 247 LGHVDTAIYGAP-SSGLTRRQVVEKYQIYGDAILGTY--GNNRPHVRDVMKPLLHFFHSE 303
L D A+YG P + +RR V+E+Y+ Y ++++G Y G+ P +R +M+PLL+ FH E
Sbjct: 247 LADADRAVYGEPYNPAPSRRWVIERYREYAESMVGRYPDGHADPSIRTLMRPLLNLFHGE 306
Query: 304 PGNGLFKRKAD 314
PG +K + D
Sbjct: 307 PGCKRWKNEVD 317
>gi|264678472|ref|YP_003278379.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
gi|262208985|gb|ACY33083.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
Length = 344
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 162/264 (61%), Gaps = 6/264 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+H LYTEM+ +++ G++ R L F E+HP+ LQ
Sbjct: 18 MSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVH--GDVARHLRFEAEEHPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + YDEINLNCGCPS +V G FG LM + V + + +A
Sbjct: 76 LGGSEPADLAHSARLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEAALVADCVKAMA 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D +SY+ + DF+ V+ + + F++H+R A L G+SP ENR I
Sbjct: 135 DVVSVPVTVKHRIGIDKIESYDFVRDFVGTVAD-AGCQVFVVHARNAWLKGLSPKENREI 193
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L RDFP LT +NGGI T D V L++ VMVGR AY NPW+ +
Sbjct: 194 PPLRYEVVAQLKRDFPGLTIAVNGGIKTDDVVQQQLQQVD-GVMVGREAYHNPWW-MASW 251
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D Y S TR Q+ E+ +Y
Sbjct: 252 DVLYYQDESRERTREQIEEQMVLY 275
>gi|268597171|ref|ZP_06131338.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268682834|ref|ZP_06149696.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
gi|268550959|gb|EEZ45978.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268623118|gb|EEZ55518.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
Length = 338
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 176/301 (58%), Gaps = 7/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPM+DWTD HYR LAR I+++AWLY+EM+ A I+Y G+ DRFL F+ + P+ LQ
Sbjct: 15 LCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 73 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMH 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP ENR +
Sbjct: 132 DAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDV 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP +
Sbjct: 192 PPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-MVMREW 249
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + + +V++ Y + +R +++ L H G ++
Sbjct: 250 DRLFYGDNRAPIEYADLVQRLYTYSQVQI--QAGRGTILRHIVRHSLGLMHGLKGAQTWR 307
Query: 311 R 311
R
Sbjct: 308 R 308
>gi|226945328|ref|YP_002800401.1| tRNA-dihydrouridine synthase A [Azotobacter vinelandii DJ]
gi|226720255|gb|ACO79426.1| Dihydrouridine synthase yjbN family protein [Azotobacter vinelandii
DJ]
Length = 336
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 171/301 (56%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPM+DWTD H R R +S HA LYTEM+ +++ G+ RFL +HP+ LQ
Sbjct: 20 FCVAPMLDWTDRHCRFFLRQLSYHALLYTEMVTTGALLH--GDARRFLRHERMEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LA LA YDEINLN GCPS +V + G LM DP V + + +
Sbjct: 78 LGGSVPGELAACARLAEEAGYDEINLNVGCPSDRVQNN-LIGACLMGDPARVADCVKAMR 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY +L DF+ +V + R FI+H+R A+L G+SP ENR I
Sbjct: 137 DAVTIPVTVKHRIGIDGRDSYGELRDFVGQVCE-AGCRSFIVHARIAILAGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L +DFPDL LNGGI T++E LR VM+GR AY NP Y L V
Sbjct: 196 PPLRYEIVAQLKQDFPDLEIVLNGGIKTLEECRLHLRS-FDGVMIGREAYHNP-YLLAQV 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ +P L+R + +++ + Y + Y N + + + +L PG F+
Sbjct: 254 DRELFDSPLPALSRHEALKRLRPY----IQQYLNEGGALHHITRHVLGLGQGFPGARRFR 309
Query: 311 R 311
+
Sbjct: 310 Q 310
>gi|415944436|ref|ZP_11556234.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
gi|407758516|gb|EKF68332.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
Length = 323
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 176/300 (58%), Gaps = 10/300 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R I++H WLYTEM+ +++ G++ R L F ++HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRVFHRQITRHTWLYTEMVTTGALLH--GDVPRHLDFDEQEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA + +L + YDEINLNCGCPS +V G FG LM +P V + + + ++
Sbjct: 59 PADLAHSAKLGEQWGYDEINLNCGCPSERVQ-KGAFGACLMGEPALVADCVKAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
V+VK RIG+D +SY+ + DF+ +++ + + FI+H+R A+L G+SP ENR IPPLKY
Sbjct: 118 DVTVKHRIGIDQVESYDFVRDFVGQIAD-AGCKTFIVHARNAILKGLSPKENREIPPLKY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y Y L +DFP+L +NGGI T+ E++ L VM+GR AY NP Y + D Y
Sbjct: 177 HYAYQLKKDFPELEILINGGIKTLPEIDEHLLH-VDGVMLGREAYHNP-YLMAAFDARYY 234
Query: 256 GAPSSGL--TRRQVVEKYQIYGDAILGTYGNNRPHVR--DVMKPLLHFFHSEPGNGLFKR 311
G G +R +V+E Y L +G+N +R + + +L PG F++
Sbjct: 235 GDLEGGRQPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQ 294
>gi|209363933|ref|YP_001424351.2| tRNA-dihydrouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|212218379|ref|YP_002305166.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuK_Q154]
gi|207081866|gb|ABS78105.2| NIFR3-like protein [Coxiella burnetii Dugway 5J108-111]
gi|212012641|gb|ACJ20021.1| NIFR3-like protein [Coxiella burnetii CbuK_Q154]
Length = 353
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 179/315 (56%), Gaps = 16/315 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L S+APMM TD H+R R IS+H LYTEM+ ++ +G R L +SPE
Sbjct: 24 RLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KGKQWRCLDYSPE 81
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ +LA LA +DEINLN GCPS +V G FG L+ + + V
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTA-GRFGACLLKEAELVA 140
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ ++A N+PVSVK R GVDD DSY L F+ V+ + R FIIH+RKA L G+S
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAE-AGCRIFIIHARKAWLKGLS 199
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PAENRT+PPL Y Y L +DFP L +NGGI T++ +N LR+ VM+GR AY NP
Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDGVMIGREAYANP 258
Query: 244 WYTLGHVDTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL 296
+ D + + + LT ++V+ +Y Y + N P + + + L
Sbjct: 259 LFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANGVP-LYAMTRHL 314
Query: 297 LHFFHSEPGNGLFKR 311
F +PG ++R
Sbjct: 315 NGLFQGQPGAKKWRR 329
>gi|59801940|ref|YP_208652.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA 1090]
gi|194099440|ref|YP_002002542.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae NCCP11945]
gi|240014854|ref|ZP_04721767.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI18]
gi|240017300|ref|ZP_04723840.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA6140]
gi|240121373|ref|ZP_04734335.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID24-1]
gi|291043074|ref|ZP_06568797.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|293398413|ref|ZP_06642591.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|385336396|ref|YP_005890343.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
gi|59718835|gb|AAW90240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934730|gb|ACF30554.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|291012680|gb|EFE04663.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|291610884|gb|EFF39981.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|317164939|gb|ADV08480.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 348
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 176/301 (58%), Gaps = 7/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPM+DWTD HYR LAR I+++AWLY+EM+ A I+Y G+ DRFL F+ + P+ LQ
Sbjct: 25 LCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQPVALQ 82
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 83 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMH 141
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP ENR +
Sbjct: 142 DAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDV 201
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP +
Sbjct: 202 PPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-MVMREW 259
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + + +V++ Y + +R +++ L H G ++
Sbjct: 260 DRLFYGDNRAPIEYADLVQRLYTYSQVQI--QAGRGTILRHIVRHSLGLMHGLKGARTWR 317
Query: 311 R 311
R
Sbjct: 318 R 318
>gi|187928263|ref|YP_001898750.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12J]
gi|187725153|gb|ACD26318.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12J]
Length = 327
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 166/271 (61%), Gaps = 17/271 (6%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R R IS+H WLYTEM+ +++ G++ R L F +HP+ LQ+GGS
Sbjct: 1 MMDWTDRHCRFFHRQISRHTWLYTEMVTTGALLH--GDVPRHLDFDEFEHPVALQLGGSE 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
D+LA+A L + Y EINLNCGCPS +V G FG LM +PK V + ++ + ++
Sbjct: 59 PDDLAQAARLGQQWGYKEINLNCGCPSERVQ-RGAFGACLMAEPKLVAQGVTAMRDAVSI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D ++Y+ + DF+ ++ + FI+H+R A+L G+SP ENR IPPL+Y
Sbjct: 118 PVTVKHRIGIDAIETYDFVRDFVGTIAE-AGCETFIVHARNAILKGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLGHVDTA 253
E Y L RDFP L LNGG+ T+++++ L AH VM+GR AY +P + + D
Sbjct: 177 EVVYQLKRDFPHLEILLNGGVQTLEQIDTHL---AHVDGVMIGREAYHHP-HLMAAFDAR 232
Query: 254 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGN 284
YGA + TR +V DA++G G
Sbjct: 233 YYGAGTEAPTRAEVE-------DAMIGYVGR 256
>gi|212212648|ref|YP_002303584.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212011058|gb|ACJ18439.1| NIFR3-like protein [Coxiella burnetii CbuG_Q212]
Length = 353
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 179/315 (56%), Gaps = 16/315 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L S+APMM TD H+R R IS+H LYTEM+ ++ +G R L +SPE
Sbjct: 24 RLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KGKQWRCLDYSPE 81
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ +LA LA +DEINLN GCPS +V G FG L+ + + V
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTA-GRFGACLLKEAELVA 140
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ ++A N+PVSVK R GVDD DSY L F+ V+ + R FIIH+RKA L G+S
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAE-AGCRIFIIHARKAWLKGLS 199
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PAENRT+PPL Y Y L +DFP L +NGGI T++ +N LR+ VM+GR AY NP
Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDGVMIGREAYANP 258
Query: 244 WYTLGHVDTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL 296
+ D + + + LT ++V+ +Y Y + N P + + + L
Sbjct: 259 LFCAAFDDLSKPVFSLGVTDKKQTPLTPKRVLLRYLPY---MAKQLANGVP-LYAMTRHL 314
Query: 297 LHFFHSEPGNGLFKR 311
F +PG ++R
Sbjct: 315 NGLFQGQPGAKKWRR 329
>gi|429771169|ref|ZP_19303199.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
gi|429182388|gb|EKY23493.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
Length = 331
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 174/314 (55%), Gaps = 18/314 (5%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD + R R +S A LYTEM+ A +I+ G+ DR L F +HP+ LQ+GGS+
Sbjct: 1 MMDWTDRNCRAFHRALSTRALLYTEMVTAPAVIH--GDRDRLLGFDAVEHPVALQLGGSD 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+A ++ AY YDEINLN GCPS +V G FG LM +P+ V + M+ I +V
Sbjct: 59 PAQLAEAAKIGEAYGYDEINLNVGCPSDRVQS-GRFGACLMREPELVADCMAAIKEAVSV 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
P +VKCRIGVDD D L + S+ + HF++H+RKA L G+SP ENR +PPL Y
Sbjct: 118 PATVKCRIGVDDQDPEISLFATV-DASAAAGITHFVVHARKAWLKGLSPKENRDVPPLDY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG----AHHVMVGRAAYQNPWYTLGHVD 251
+ L R+ P L +NGGI +D+ A L+ VM+GRAAY P LG VD
Sbjct: 177 DLVRRLKRERPHLAICINGGIGDLDQAEAHLKADDGVQLDGVMLGRAAYHEPAL-LGQVD 235
Query: 252 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
I+G + + + +E+Y+ Y A L N + + + +L H G F+R
Sbjct: 236 RRIFGEATPDVDVFEALERYRSYMAARLDEGAN----LASMTRHMLGLMHGRAGARAFRR 291
Query: 312 KADAAFQTCKTVKS 325
T + VKS
Sbjct: 292 -----ILTVEGVKS 300
>gi|336450142|ref|ZP_08620598.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
gi|336282960|gb|EGN76170.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
Length = 327
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 179/302 (59%), Gaps = 13/302 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R R IS+ A LYTEM+ II+ G D FLA++ +HP+ LQ
Sbjct: 2 ISVAPMLDWTDRHCRFFHRQISQQALLYTEMVTTGAIIH--GKQD-FLAYNEAEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P V + + +
Sbjct: 59 LGGSNPSDLAACAKLAAERGYDEVNLNVGCPSDRVQ-NGSFGACLMAEPLLVADCIKAMQ 117
Query: 131 -ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT 189
A N+PV+VK R+G+DD DSY L I + ++ R I+H+RKA LNG+SP ENR
Sbjct: 118 DAAPNIPVTVKTRLGIDDFDSYEFLQALIEPLIAIDCPR-VILHARKAWLNGLSPKENRE 176
Query: 190 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH 249
+PPL YE Y + RD+P L LNGG+N++ E L+ VM+GRAAY NPW L
Sbjct: 177 VPPLNYERVYQVKRDYPALQVHLNGGVNSLAEAQEHLQL-VDGVMLGRAAYSNPWL-LAE 234
Query: 250 VDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLF 309
VDT ++GA + + QV+++ Y + + G V + +L + + PG +
Sbjct: 235 VDT-LFGAAETAPVKEQVIQQMIAYIEQHIEAGG----RFWHVARHMLGLYQNCPGARQW 289
Query: 310 KR 311
+R
Sbjct: 290 RR 291
>gi|448747017|ref|ZP_21728681.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Halomonas titanicae
BH1]
gi|445565527|gb|ELY21637.1| tRNA-dihydrouridine synthase, TIM-barrel, YjbN [Halomonas titanicae
BH1]
Length = 357
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 173/310 (55%), Gaps = 9/310 (2%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+AR L FSVAPMMDWT YR LAR ++K A LYTEM+ I++ +RFL ++
Sbjct: 15 IARPELDRTFSVAPMMDWTTRDYRALARTLTKRALLYTEMVTTGAILHGTPR-ERFLGYN 73
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
+HP+ LQ+GGS+ LA+ +A A+ YDE+NLN GCPS +V + G LM P+
Sbjct: 74 EVEHPLALQLGGSDASELAECAAIAEAWGYDEVNLNVGCPSDRVQ-NNLIGACLMGYPEK 132
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V EA+ + A ++PV+VKCRIG+DD D L FI V+ + F +H+RKA L G
Sbjct: 133 VAEAVRAMQAAVSIPVTVKCRIGIDDQDEDADLERFIAIVAD-AGCEVFTVHARKAWLQG 191
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP +NR +PPL Y + L + P+L +NGGI T+ E A L VMVGR AYQ
Sbjct: 192 LSPKQNRDVPPLNYPRVHRLKQSRPELHIGINGGIKTLAECQAQLTH-VDSVMVGREAYQ 250
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NPW G VD ++G +R ++ Y L + + + + LL F
Sbjct: 251 NPWLLAG-VDEQLFGEQGPAESRLDAANAFRPYIQQRL----DEGAKLNHITRHLLGLFQ 305
Query: 302 SEPGNGLFKR 311
PG F+R
Sbjct: 306 GCPGGRRFRR 315
>gi|254494393|ref|ZP_05107564.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268595490|ref|ZP_06129657.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268599350|ref|ZP_06133517.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268602043|ref|ZP_06136210.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268604377|ref|ZP_06138544.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268684995|ref|ZP_06151857.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268687257|ref|ZP_06154119.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
gi|226513433|gb|EEH62778.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268548879|gb|EEZ44297.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268583481|gb|EEZ48157.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268586174|gb|EEZ50850.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268588508|gb|EEZ53184.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268625279|gb|EEZ57679.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268627541|gb|EEZ59941.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
Length = 338
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 176/301 (58%), Gaps = 7/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPM+DWTD HYR LAR I+++AWLY+EM+ A I+Y G+ DRFL F+ + P+ LQ
Sbjct: 15 LCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVY--GDKDRFLMFNEGEQPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 73 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMH 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP ENR +
Sbjct: 132 DAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDV 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP +
Sbjct: 192 PPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-MVMREW 249
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG + + +V++ Y + +R +++ L H G ++
Sbjct: 250 DRLFYGDNRAPIEYADLVQRLYTYSQVQI--QAGRGTILRHIVRHSLGLMHGLKGARTWR 307
Query: 311 R 311
R
Sbjct: 308 R 308
>gi|29654227|ref|NP_819919.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 493]
gi|29541493|gb|AAO90433.1| NifR3-like protein [Coxiella burnetii RSA 493]
Length = 353
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 179/315 (56%), Gaps = 16/315 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L S+APMM TD H+R R IS+H LYTEM+ ++ +G R L +SPE
Sbjct: 24 RLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KGKQWRCLDYSPE 81
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS+ +LA LA +DEINLN GCPS +V G FG L+ + + V
Sbjct: 82 EHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIA-GRFGACLLKEAELVA 140
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ ++ ++A N+PVSVK R GVDD DSY L F+ V+ + R FIIH+RKA L G+S
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAE-AGCRIFIIHARKAWLKGLS 199
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
PAENRT+PPL Y Y L +DFP L +NGGI T++ +N LR+ VM+GR AY NP
Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDGVMIGREAYANP 258
Query: 244 WYTLGHVDTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL 296
+ D + + + LT ++V+ +Y Y + N P + + + L
Sbjct: 259 LFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANGVP-LYAMTRHL 314
Query: 297 LHFFHSEPGNGLFKR 311
F +PG ++R
Sbjct: 315 NGLFQGQPGAKKWRR 329
>gi|298369820|ref|ZP_06981136.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281280|gb|EFI22769.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
Length = 345
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 181/314 (57%), Gaps = 24/314 (7%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
VAPM+DWTD H+R +AR I+++AWLY+EM+ A IIY G+ DRFL F+ + P+ LQ+G
Sbjct: 24 VAPMLDWTDRHFRYMARQITENAWLYSEMINAGAIIY--GDKDRFLMFNEGEQPVALQLG 81
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS +LAKA + A Y Y+EINLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 82 GSEPADLAKAAKAAEEYGYNEINLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMQDA 140
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP 192
++PV+VK RIGVD Y +F+ + + R FI+H+R A L+G+SP ENR +PP
Sbjct: 141 VDIPVTVKHRIGVDRQTEYGVAAEFVGTLYEKTACRTFIVHARNAWLDGLSPKENREVPP 200
Query: 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDT 252
LKY+Y Y L +DFP+L +NGGI T ++++ L K VMVGR AY NP + D
Sbjct: 201 LKYDYVYRLKQDFPELEIIINGGITTNEQISEHL-KHVDGVMVGREAYHNP-MIMRDWDR 258
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHV--------RDVMKPLLHFFHSEP 304
YG S + Y D +L Y +R + R +++ L H
Sbjct: 259 LFYGESSPPVE----------YADLVLKLYEYSRAQIQAGRGTILRHIVRHSLGLMHGLK 308
Query: 305 GNGLFKRK-ADAAF 317
++R +DAA
Sbjct: 309 NARTWRRMLSDAAL 322
>gi|120554835|ref|YP_959186.1| tRNA-dihydrouridine synthase A [Marinobacter aquaeolei VT8]
gi|120324684|gb|ABM18999.1| tRNA-U16,U17-dihydrouridine synthase [Marinobacter aquaeolei VT8]
Length = 337
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 179/303 (59%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F VAPMMDWT H+R LAR++SK A LYTEM+ +I+ G+ +RFL ++P+ LQ
Sbjct: 15 FCVAPMMDWTTPHFRYLARILSKRALLYTEMVTTGALIH--GDTERFLRHDVSEYPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + LA LA + + E+NLN GCPS +V + G LM P V E +S +
Sbjct: 73 LGGSDANELAHCARLAQQFGFSEVNLNVGCPSDRVQNN-MIGACLMGHPDKVAEGVSAMI 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
T++PV+VK RIG++ +S+ +LC+FI V++ + + FI+H+R A+L G+SP ENR I
Sbjct: 132 EATDLPVTVKHRIGINGRESWEELCEFIETVAA-AGCKTFIVHARIAVLEGLSPKENRDI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY++ Y L + +P L +NGGI T E + L VM+GR AY NPW L V
Sbjct: 191 PPLKYDWVYRLKQAYPHLEIIINGGIKTFGECHEHLTH-TDGVMLGREAYHNPWL-LAEV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKY--QIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++G P + +R + + I + G Y + + + ++ F +PG
Sbjct: 249 DAALFGEPPAVTSRHEALRAMFPFIQQELDRGVY------LTHITRHIMGLFLGQPGGRQ 302
Query: 309 FKR 311
F+R
Sbjct: 303 FRR 305
>gi|421593804|ref|ZP_16038317.1| tRNA-dihydrouridine synthase A [Rhizobium sp. Pop5]
gi|403700176|gb|EJZ17420.1| tRNA-dihydrouridine synthase A [Rhizobium sp. Pop5]
Length = 333
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 14/305 (4%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS+ A LYTEM+ A+ II+ G +R L P +HP+
Sbjct: 6 PIFAVAPMIDWTDRHCRYFHRQISREALLYTEMVVADAIIH--GPRERLLGHDPAEHPLA 63
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A LA Y YDE+NLN GCPS +V G FG LML P+ V ++
Sbjct: 64 LQLGGSDPVKLAEAVRLAQPYGYDEVNLNVGCPSDRVQS-GTFGACLMLTPETVAACVAA 122
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ A VPV+VKCRIGVD+ + L I +V + IH+RKA L G+SP ENR
Sbjct: 123 MKAVATVPVTVKCRIGVDEQEPEEALPALITRVLD-AGADAIWIHARKAWLKGLSPKENR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYT 246
IPPL Y+ Y + +PD+ +NGGI T+DE A L AH VM+GRAAYQN
Sbjct: 182 EIPPLDYDIVYRMKESWPDVFIGINGGIRTLDEAEAHL---AHVDGVMLGRAAYQNA-AI 237
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD +GAP++ + + ++ Y + + + G ++ V + ++ F PG
Sbjct: 238 LADVDHRFFGAPAAEPDWQALRDRMMTYAERHIASGGR----LQHVARHMVGLFTGLPGA 293
Query: 307 GLFKR 311
+++
Sbjct: 294 RRYRQ 298
>gi|238754677|ref|ZP_04616030.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
gi|238707136|gb|EEP99500.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
Length = 343
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 154/245 (62%), Gaps = 6/245 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K A LYTEM+ II+ + + +LA+S + HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFHRLLTKEALLYTEMVTTGAIIHGKAD---YLAYSEQDHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V + + +
Sbjct: 79 LGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVADCVKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV+ F IH+RKA L+G+SP ENR +
Sbjct: 138 DVVSIPVTVKTRIGIDDQDSYEFLCEFVQKVAEQGGCDMFTIHARKAWLSGLSPKENREV 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGG+ T++E L K VM+GR AYQNP L V
Sbjct: 198 PPLDYPRVYQLKRDFPALTMAINGGVKTLEEAKEHL-KYLDGVMMGREAYQNP-SILTQV 255
Query: 251 DTAIY 255
D ++
Sbjct: 256 DRELF 260
>gi|22124488|ref|NP_667911.1| tRNA-dihydrouridine synthase A [Yersinia pestis KIM10+]
gi|45440326|ref|NP_991865.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Microtus
str. 91001]
gi|108809958|ref|YP_653874.1| tRNA-dihydrouridine synthase A [Yersinia pestis Antiqua]
gi|108813513|ref|YP_649280.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|145600902|ref|YP_001164978.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides F]
gi|150260637|ref|ZP_01917365.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162420841|ref|YP_001605835.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165926732|ref|ZP_02222564.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936521|ref|ZP_02225089.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010496|ref|ZP_02231394.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213918|ref|ZP_02239953.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402469|ref|ZP_02307926.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418732|ref|ZP_02310485.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426194|ref|ZP_02317947.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167467147|ref|ZP_02331851.1| tRNA-dihydrouridine synthase A [Yersinia pestis FV-1]
gi|218927522|ref|YP_002345397.1| tRNA-dihydrouridine synthase A [Yersinia pestis CO92]
gi|229836573|ref|ZP_04456739.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|229840181|ref|ZP_04460340.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842263|ref|ZP_04462418.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903999|ref|ZP_04519112.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|270489016|ref|ZP_06206090.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294502383|ref|YP_003566445.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|384120870|ref|YP_005503490.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|384124748|ref|YP_005507362.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|384137704|ref|YP_005520406.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|384413316|ref|YP_005622678.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544763|ref|ZP_15042958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|420550067|ref|ZP_15047702.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|420555518|ref|ZP_15052553.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|420561163|ref|ZP_15057465.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|420566204|ref|ZP_15062011.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|420571833|ref|ZP_15067127.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|420577178|ref|ZP_15071958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|420582517|ref|ZP_15076821.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|420587659|ref|ZP_15081464.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|420592968|ref|ZP_15086241.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|420598657|ref|ZP_15091342.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|420604186|ref|ZP_15096265.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|420609527|ref|ZP_15101117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|420614776|ref|ZP_15105797.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|420620227|ref|ZP_15110548.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|420625278|ref|ZP_15115125.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|420630435|ref|ZP_15119808.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|420635564|ref|ZP_15124394.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|420641163|ref|ZP_15129439.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|420646323|ref|ZP_15134173.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|420651967|ref|ZP_15139232.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|420657414|ref|ZP_15144148.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|420662754|ref|ZP_15148912.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|420667746|ref|ZP_15153426.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|420673050|ref|ZP_15158250.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|420678549|ref|ZP_15163255.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|420683778|ref|ZP_15167956.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|420688949|ref|ZP_15172551.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|420694760|ref|ZP_15177632.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|420700014|ref|ZP_15182229.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|420706178|ref|ZP_15187107.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|420711464|ref|ZP_15191904.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|420716826|ref|ZP_15196660.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|420722477|ref|ZP_15201468.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|420728124|ref|ZP_15206486.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|420733219|ref|ZP_15211075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|420738685|ref|ZP_15216012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|420743925|ref|ZP_15220705.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|420749802|ref|ZP_15225638.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|420754870|ref|ZP_15230177.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|420760975|ref|ZP_15235026.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|420766146|ref|ZP_15239708.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|420771193|ref|ZP_15244223.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|420776529|ref|ZP_15249041.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|420781987|ref|ZP_15253829.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|420787436|ref|ZP_15258603.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|420792880|ref|ZP_15263509.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|420798052|ref|ZP_15268152.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|420803401|ref|ZP_15272969.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|420808579|ref|ZP_15277657.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|420814376|ref|ZP_15282843.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|420819503|ref|ZP_15287498.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|420824592|ref|ZP_15292045.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|420830402|ref|ZP_15297293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|420835232|ref|ZP_15301644.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|420840359|ref|ZP_15306289.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|420845966|ref|ZP_15311368.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|420851300|ref|ZP_15316133.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|420856895|ref|ZP_15320840.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|421761744|ref|ZP_16198544.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
gi|38604954|sp|Q8ZJ14.1|DUSA_YERPE RecName: Full=tRNA-dihydrouridine synthase A
gi|21957280|gb|AAM84162.1|AE013659_6 hypothetical protein y0574 [Yersinia pestis KIM10+]
gi|45435182|gb|AAS60742.1| Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Yersinia pestis biovar Microtus str. 91001]
gi|108777161|gb|ABG19680.1| hypothetical protein YPN_3353 [Yersinia pestis Nepal516]
gi|108781871|gb|ABG15929.1| hypothetical protein YPA_3968 [Yersinia pestis Antiqua]
gi|115346133|emb|CAL19001.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212598|gb|ABP42005.1| hypothetical protein YPDSF_3655 [Yersinia pestis Pestoides F]
gi|149290045|gb|EDM40122.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162353656|gb|ABX87604.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165915637|gb|EDR34246.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921355|gb|EDR38579.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990586|gb|EDR42887.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204893|gb|EDR49373.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962726|gb|EDR58747.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048157|gb|EDR59565.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054905|gb|EDR64707.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229679769|gb|EEO75872.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|229690573|gb|EEO82627.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696547|gb|EEO86594.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706257|gb|EEO92265.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|262360466|gb|ACY57187.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|262364412|gb|ACY60969.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|270337520|gb|EFA48297.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294352842|gb|ADE63183.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|320013820|gb|ADV97391.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852833|gb|AEL71386.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|391432821|gb|EIQ94225.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|391433794|gb|EIQ95074.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|391436489|gb|EIQ97440.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|391448818|gb|EIR08596.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|391449521|gb|EIR09240.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|391451830|gb|EIR11293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|391464830|gb|EIR23075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|391466407|gb|EIR24480.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|391468483|gb|EIR26354.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|391482090|gb|EIR38566.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|391482864|gb|EIR39279.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|391483187|gb|EIR39575.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|391497049|gb|EIR51943.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|391497975|gb|EIR52787.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|391501490|gb|EIR55892.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|391512760|gb|EIR66051.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|391514298|gb|EIR67417.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|391516099|gb|EIR69025.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|391528314|gb|EIR80144.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|391531127|gb|EIR82643.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|391532381|gb|EIR83778.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|391545340|gb|EIR95443.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|391547026|gb|EIR96962.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|391547813|gb|EIR97671.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|391561446|gb|EIS09971.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|391562618|gb|EIS11012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|391564746|gb|EIS12922.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|391576828|gb|EIS23328.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|391577637|gb|EIS24031.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|391588895|gb|EIS33856.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|391592175|gb|EIS36646.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|391592909|gb|EIS37280.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|391605850|gb|EIS48668.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|391607726|gb|EIS50292.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|391608296|gb|EIS50802.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|391620412|gb|EIS61571.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|391621267|gb|EIS62329.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|391629763|gb|EIS69645.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|391631857|gb|EIS71442.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|391643090|gb|EIS81290.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|391645886|gb|EIS83713.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|391649002|gb|EIS86453.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|391655599|gb|EIS92321.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|391662436|gb|EIS98366.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|391667553|gb|EIT02874.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|391669189|gb|EIT04347.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|391672966|gb|EIT07731.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|391686879|gb|EIT20254.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|391688326|gb|EIT21552.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|391689662|gb|EIT22768.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|391701023|gb|EIT33065.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|391704128|gb|EIT35810.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|391704880|gb|EIT36495.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|391715593|gb|EIT46117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|391720457|gb|EIT50478.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|391721025|gb|EIT51002.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|391731554|gb|EIT60242.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|391734126|gb|EIT62419.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|391737417|gb|EIT65304.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|411178066|gb|EKS48078.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
Length = 345
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 183/337 (54%), Gaps = 10/337 (2%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
QY FSVAPM+DWTD H R RL++K A LYTEM+ II+ + + +LA+S +
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKAD---YLAYSEQD 72
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V +
Sbjct: 73 HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVAD 131
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP
Sbjct: 132 CIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSP 191
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR +PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP
Sbjct: 192 KENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNPG 250
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L VD ++ + + + +E Y + L + ++ + + +L F P
Sbjct: 251 -ILTQVDRELFDPNAPVVDSVKAIEALYPYIEQEL----SQGAYLGHITRHILGIFQGIP 305
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
G ++R S +EE + + S +S
Sbjct: 306 GARQWRRHLSENAHKPGAGVSVVEEALALVSPSYYES 342
>gi|422591186|ref|ZP_16665833.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878546|gb|EGH12695.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 339
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 177/305 (58%), Gaps = 10/305 (3%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL +HP
Sbjct: 19 LSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDETEHP 76
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA LA YDE+NLN GCPS +V + G LM P+ V + +
Sbjct: 77 LALQLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVADCV 135
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+SP E
Sbjct: 136 KAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHE-AGCQSFTVHARIAILEGLSPKE 194
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP Y
Sbjct: 195 NRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP-YL 252
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD ++G+ + ++R + +E + Y A + + GN R ++ L F PG
Sbjct: 253 LAQVDQQLFGSVAPVISRHEALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF----PGA 308
Query: 307 GLFKR 311
F++
Sbjct: 309 RRFRQ 313
>gi|429335178|ref|ZP_19215817.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
gi|428760137|gb|EKX82412.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
Length = 336
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 170/287 (59%), Gaps = 6/287 (2%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD R RL+S+HA LYTEM+ +++ G+ RFL ++P
Sbjct: 16 LSRRFSVAPMMDWTDRRCRFFLRLLSRHALLYTEMVTTGALLH--GDSARFLGHDAAEYP 73
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS +LA +LA Y+E+NLN GCPS +V + G LM P V + +
Sbjct: 74 LALQLGGSVPADLAACAKLAEVAGYNEVNLNVGCPSDRVQNN-MIGACLMGHPALVADCV 132
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +PV+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP E
Sbjct: 133 KAMIDAVQIPVTVKHRIGINGRDSYAELCDFVGQVRD-AGCRSFTVHARIAILEGLSPKE 191
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL+Y+ L +DFPDL LNGGI T++E + L K VM+GR AY NP Y
Sbjct: 192 NREIPPLRYDIAAQLKKDFPDLEIILNGGIKTLEECHEHL-KTFDGVMLGREAYHNP-YL 249
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVM 293
L VD ++G+ + +TR + +E+ + Y A L G R V+
Sbjct: 250 LAQVDQQLFGSSAPVITRAEALEQLKPYIAAHLAAGGAMHHVTRHVL 296
>gi|51594726|ref|YP_068917.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
32953]
gi|186893729|ref|YP_001870841.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis PB1/+]
gi|51588008|emb|CAH19612.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186696755|gb|ACC87384.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis PB1/+]
Length = 345
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 183/337 (54%), Gaps = 10/337 (2%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
QY FSVAPM+DWTD H R RL++K A LYTEM+ II+ + + +LA+S +
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKAD---YLAYSEQD 72
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V +
Sbjct: 73 HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVAD 131
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP
Sbjct: 132 CIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSP 191
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR +PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP
Sbjct: 192 KENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNPG 250
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L VD ++ + + + +E Y + L + ++ + + +L F P
Sbjct: 251 -ILTQVDRELFDPHAPVVDSVKAIEALYPYIEQEL----SQGAYLGHITRHILGIFQGIP 305
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
G ++R S +EE + + S +S
Sbjct: 306 GARQWRRHLSENAHKPGAGVSVVEEALALVSPSYYES 342
>gi|359440020|ref|ZP_09229946.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
gi|358038094|dbj|GAA66195.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
Length = 310
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 175/296 (59%), Gaps = 11/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
M+DWTD H RT R ++KH LYTEM+ I++ +G+ +L F+ + P+ LQ+GGS+
Sbjct: 1 MLDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGD---YLHFNKHEGPVALQLGGSD 57
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
LA+ +LA YDEINLN GCPS +V +G FG LM +P+ V E ++ + + ++
Sbjct: 58 PKALAQCAKLAGERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVAECVAAMKSEVSI 116
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VK RIG+D+ DSY LC I + S FIIH+RKA LNG+SP ENR +PPL Y
Sbjct: 117 PVTVKTRIGIDEQDSYEFLCALI-EASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDY 175
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
Y L +D+P L +LNGG+ T+++ L+ VM+GR AY NP + L VD IY
Sbjct: 176 PRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQH-IDGVMIGREAYSNP-FMLNDVDEKIY 233
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G ++ +R VV Y + + G N H + + +L F +PG F+R
Sbjct: 234 GDAANTQSRHDVVRSMYSYIEEEM-RLGANFWH---IARHMLGIFQGQPGARGFRR 285
>gi|405363402|ref|ZP_11026356.1| tRNA dihydrouridine synthase A [Chondromyces apiculatus DSM 436]
gi|397089810|gb|EJJ20709.1| tRNA dihydrouridine synthase A [Myxococcus sp. (contaminant ex DSM
436)]
Length = 344
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 174/304 (57%), Gaps = 10/304 (3%)
Query: 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPI 67
P SVAPMMDWTD + R RL+S+H LYTEM+ +I+ G+ DR L + +HP+
Sbjct: 19 PTPLSVAPMMDWTDRNCRYFHRLLSRHTLLYTEMVTTGAVIH--GDRDRLLGYDAAEHPV 76
Query: 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127
LQ+GGS + LA++ + + YDEINLN GCPS +V G FG LM +P+ V +
Sbjct: 77 ALQLGGSEPEALAESARIGEQWGYDEINLNVGCPSDRVQS-GRFGACLMAEPELVARLVG 135
Query: 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
+ N+PV+VK RI +D+ + + L FI VS+ TR FI+H+RKA L G+SP EN
Sbjct: 136 AMRDAVNIPVTVKSRIAIDELEEWPTLEGFIRTVSAAGCTR-FIVHARKAWLQGLSPREN 194
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247
R +PPL+Y+ + L +FP L ++NGGI T+D L+ VM+GRA Y+NP Y L
Sbjct: 195 RDVPPLRYDLVHRLKAEFPHLDISINGGIKTLDAAAEQLQH-VDGVMMGRAPYENP-YLL 252
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
D +GA + R +VVE Y I G P + + + +L F PG
Sbjct: 253 AEADRRFFGATTPVPQRHEVVEAMLPY---IEKARGRGAP-LGAITRHMLGLFQGLPGAR 308
Query: 308 LFKR 311
++R
Sbjct: 309 AWRR 312
>gi|299531032|ref|ZP_07044445.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
gi|298720989|gb|EFI61933.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
Length = 327
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 162/264 (61%), Gaps = 6/264 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL+S+H LYTEM+ +++ G++ R L F E+HP+ LQ
Sbjct: 1 MSVAPMMDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVH--GDVARHLRFEAEEHPVALQ 58
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA + L + YDEINLNCGCPS +V G FG LM + V + + +A
Sbjct: 59 LGGSEPADLAHSARLGEQWGYDEINLNCGCPSERVQ-RGAFGACLMNEAALVADCVKAMA 117
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+D +SY+ + DF+ V+ + + F++H+R A L G+SP ENR I
Sbjct: 118 DVVSVPVTVKHRIGIDKIESYDFVRDFVGTVAD-AGCQVFVVHARNAWLKGLSPKENREI 176
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE L RDFP LT +NGGI T D V L++ VMVGR AY NPW+ +
Sbjct: 177 PPLRYEVVAQLKRDFPGLTIAVNGGIKTDDVVQQQLQQVD-GVMVGREAYHNPWW-MASW 234
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D Y S TR Q+ E+ +Y
Sbjct: 235 DALYYQDESRERTREQIEEQMVLY 258
>gi|222086273|ref|YP_002544805.1| tRNA-dihydrouridine synthase A [Agrobacterium radiobacter K84]
gi|221723721|gb|ACM26877.1| tRNA-dihydrouridine synthase (nifR3-like) protein [Agrobacterium
radiobacter K84]
Length = 337
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 178/303 (58%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWTD H R L R IS+HA LYTEM+ A+ II+ G DR L +HP+ LQ
Sbjct: 13 FAVAPMIDWTDRHCRYLHRQISRHALLYTEMVVADAIIH--GPRDRLLGHDVSEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ L+ A ++A AYNYDEINLN GCPS +V G FG LML P+ V E ++ +
Sbjct: 71 LGGSDPAKLSNALQIAEAYNYDEINLNVGCPSDRVQS-GTFGACLMLTPETVAECIAAMK 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A + PV+VKCRIGVD+ + L + I +V + IH+RKA L G+SP ENR I
Sbjct: 130 AVSKAPVTVKCRIGVDEQEPEQALPELIARVLD-AGADAIWIHARKAWLKGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y+ Y + + +PD+ +NGGI T+D+ A L AH VM+GRAAYQN L
Sbjct: 189 PPLDYDIVYRMKQRWPDVFIGINGGIQTLDQAEAHL---AHVDGVMLGRAAYQNA-AILA 244
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD +G + + ++ Y + + + G V V + ++ F PG+
Sbjct: 245 DVDHRFFGEAAVEPDWNDLRDRMMAYTERHIASGGR----VHHVARHMVGLFTGLPGSRR 300
Query: 309 FKR 311
+++
Sbjct: 301 YRQ 303
>gi|164685730|ref|ZP_01945619.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165918518|ref|ZP_02218604.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
gi|164601240|gb|EAX33765.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165917764|gb|EDR36368.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
Length = 328
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 177/308 (57%), Gaps = 16/308 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM TD H+R R IS+H LYTEM+ ++ +G R L +SPE+HP+ LQ
Sbjct: 6 ISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KGKQWRCLDYSPEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA LA +DEINLN GCPS +V G FG L+ + + V + ++ ++
Sbjct: 64 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTA-GRFGACLLKEAELVADCVAAMS 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A N+PVSVK R GVDD DSY L F+ V+ + R FIIH+RKA L G+SPAENRT+
Sbjct: 123 AEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAE-AGCRIFIIHARKAWLKGLSPAENRTV 181
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP L +NGGI T++ +N LR+ VM+GR AY NP +
Sbjct: 182 PPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDGVMIGREAYANPLFCAAFD 240
Query: 251 DTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
D + + + LT ++V+ +Y Y + N P + + + L F +
Sbjct: 241 DLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANGVP-LYAMTRHLNGLFQGQ 296
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 297 PGAKKWRR 304
>gi|428306689|ref|YP_007143514.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
gi|428248224|gb|AFZ14004.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
Length = 334
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 175/301 (58%), Gaps = 11/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H R R I++ LYTEM+ + I++ G+ +R L FSPE+ P+ LQ
Sbjct: 21 LSVAPMMDRTDRHCRYFMRQITRCTLLYTEMVTSAAILH--GDKERLLGFSPEEKPLSLQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG N +LA+ +A Y+EINLN GCPS +V +G FG LM P V + ++ +
Sbjct: 79 VGGDNPKDLAECARIAEGMGYNEINLNVGCPSDRVQ-NGNFGACLMAQPYKVADCIAAMI 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
TN+PV+VK RIG+DD DSY + +F+ VS R F +H+RKA L G+SP ENR I
Sbjct: 138 QATNIPVTVKHRIGIDDLDSYEDMTNFVRIVSDAGCQR-FTVHARKAWLQGLSPKENRDI 196
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y + L ++FP L +NGG + +V L + VM+GRAAY NP Y
Sbjct: 197 PPLRYGDVHKLKQEFPHLFIEINGGFTNLQQVKEQL-QFVDAVMIGRAAYDNP-YIFAIA 254
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IYG ++ TR QVVE Y D + + + + +L F+ +PG+ +K
Sbjct: 255 DGEIYGKDTAP-TRHQVVEAMLPYID----YWAKKGLKLNKITRHMLQLFNGQPGSRAWK 309
Query: 311 R 311
R
Sbjct: 310 R 310
>gi|422654763|ref|ZP_16717494.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330967777|gb|EGH68037.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 336
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 184/332 (55%), Gaps = 17/332 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL
Sbjct: 13 RPGLSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDET 70
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS +LA LA YDE+NLN GCPS +V + G LM P+ V
Sbjct: 71 EHPLALQLGGSTAADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVA 129
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+S
Sbjct: 130 DCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHE-AGCQSFTVHARIAILEGLS 188
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP
Sbjct: 189 PKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP 247
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L VD ++G+ + ++R + +E + Y A + + GN R ++ L F
Sbjct: 248 -YLLAQVDQQLFGSVAPVISRHEALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF---- 302
Query: 304 PGNGLFKR-------KADAAFQTCKTVKSFLE 328
PG F++ KA+ FLE
Sbjct: 303 PGARRFRQLLSVDIHKAENPLLLLDQAAKFLE 334
>gi|385338702|ref|YP_005892575.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411116|emb|CBY91521.1| K05539 tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE
2594]
Length = 338
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 176/301 (58%), Gaps = 7/301 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
VAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ + P+ LQ
Sbjct: 15 LCVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQPVALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V + ++ +
Sbjct: 73 LGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGAFGACLMNEVGLVADCLNAMQ 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP ENR +
Sbjct: 132 DAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDV 191
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPLKY+Y Y L ++FP L +NGGI T + + L+ VMVGR AY NP +
Sbjct: 192 PPLKYDYVYRLKQEFPGLEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-MVMREW 249
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D YG ++ + +V++ Y A + +R +++ L H G ++
Sbjct: 250 DRLFYGDTANPIGYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKGARTWR 307
Query: 311 R 311
R
Sbjct: 308 R 308
>gi|399035492|ref|ZP_10732907.1| tRNA dihydrouridine synthase A [Rhizobium sp. CF122]
gi|398066623|gb|EJL58182.1| tRNA dihydrouridine synthase A [Rhizobium sp. CF122]
Length = 342
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 174/303 (57%), Gaps = 10/303 (3%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS++A LYTEM+ A+ II+ G +R L+F +HP+
Sbjct: 16 PIFAVAPMIDWTDRHCRYFHRQISRNALLYTEMVVADAIIH--GPRERLLSFDAAEHPVA 73
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A +A Y YDEINLN GCPS +V G FG LML P+ V +S
Sbjct: 74 LQLGGSDPAKLAEAVRIAAPYGYDEINLNVGCPSDRVQS-GTFGACLMLTPEIVAACVSA 132
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ A +VPV+VKCRIGVD+ D L D + +V + IH+RKA L G+SP ENR
Sbjct: 133 MKAVADVPVTVKCRIGVDEQDPETALPDLLDRVLD-AGADAIWIHARKAWLKGLSPKENR 191
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248
IPPL YE Y + PD+ +NGGI T+DE L +M+GRAAYQN L
Sbjct: 192 EIPPLDYEIVYHMKEARPDVFIGVNGGIQTLDEAADHLNH-VDGIMLGRAAYQNA-AILS 249
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD YGA + ++ ++ Y + + G ++ V + ++ F PG
Sbjct: 250 DVDDRFYGATTDPADWGEIRDRMMAYAERHIANGG----RLQQVARHMVGLFTGLPGARR 305
Query: 309 FKR 311
+++
Sbjct: 306 YRQ 308
>gi|254241250|ref|ZP_04934572.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126194628|gb|EAZ58691.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 332
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 165/279 (59%), Gaps = 13/279 (4%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD H R R +S+H LYTEM+ +++ G+ RFL + +HP
Sbjct: 12 LSRRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLH--GDRQRFLRYDECEHP 69
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS LA LA YDE+NLN GCPS +V H G LM +P V + +
Sbjct: 70 LALQLGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQ-HNMIGACLMGNPALVADCV 128
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ + V+VK RIG++ DSY +LCDF+ +V + R F++H+R A+L G+SP E
Sbjct: 129 KAMLDAVEIAVTVKHRIGINGRDSYAELCDFVGQVRE-AGCRSFMVHARIAILEGLSPKE 187
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR +PPL+YE L +DFPDL LNGGI T++ L+ VM+GR AY NP Y
Sbjct: 188 NREVPPLRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQT-FDGVMLGREAYHNP-YL 245
Query: 247 LGHVDTAIYGAPSSGLTR-------RQVVEKYQIYGDAI 278
L VD+ ++G+ + L+R R +E++Q G A+
Sbjct: 246 LAAVDSQLFGSEAPPLSRSEALLRLRPYIERHQAEGGAM 284
>gi|385854520|ref|YP_005901033.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
gi|325203461|gb|ADY98914.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
Length = 336
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 179/306 (58%), Gaps = 8/306 (2%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LPP SVAPM+DWTD HYR +AR I+++ WLY+EM+ A I+Y G+ DRFL F+ +
Sbjct: 8 LPPRRLSVAPMLDWTDRHYRYMARQITRNTWLYSEMVNAGAIVY--GDKDRFLMFNEGEQ 65
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ +LAKA + A Y Y+E+NLNCGCPSP+V G FG LM + V +
Sbjct: 66 PVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQ-KGSFGACLMNEVGLVADC 124
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + + V+VK RIGVD Y + DF+ + + + FI+H+R A L+G+SP
Sbjct: 125 LNAMQDAVGITVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPK 184
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPLKY+Y Y L ++FP+L +NGGI T + + L+ VMVGR AY NP
Sbjct: 185 ENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQH-VDGVMVGREAYHNP-M 242
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
+ D YG + + +V++ Y A + +R +++ L H G
Sbjct: 243 VMREWDRLFYGDNHAPIEYADLVQRLYTYSQAQI--QAGRGTILRHIVRHSLGLMHGLKG 300
Query: 306 NGLFKR 311
++R
Sbjct: 301 ARTWRR 306
>gi|338997578|ref|ZP_08636273.1| tRNA-dihydrouridine synthase A [Halomonas sp. TD01]
gi|338765552|gb|EGP20489.1| tRNA-dihydrouridine synthase A [Halomonas sp. TD01]
Length = 340
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 175/326 (53%), Gaps = 16/326 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWT YR AR ++K LYTEM+ I++ +RFL +S +HPI LQ
Sbjct: 19 FSVAPMMDWTTRDYRAFARTLTKRTLLYTEMVTTGAILHGTPR-ERFLGYSDVEHPIALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +A A+ YDE+NLN GCPS +V + G LM P+ V A+ +
Sbjct: 78 LGGSDAGELAECAAIAEAWGYDEVNLNVGCPSDRVQ-NNMIGACLMGYPEKVATAVKAMQ 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VKCRIG+DD D L FI V+++ F +H+RKA L G+SP +NR +
Sbjct: 137 AAVSIPVTVKCRIGIDDQDEDADLARFIEIVANVG-CNIFTVHARKAWLQGLSPKQNRDV 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y + L + P+L +NGGI T+ E A L VMVGR AYQNPW G V
Sbjct: 196 PPLNYPRVHRLKQSHPELHIGINGGIKTLAECKAQLEH-VDSVMVGREAYQNPWLLAG-V 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G TR + ++ Y L + + + + LL F PG F+
Sbjct: 254 DEQLFGEAGPARTRLEAANAFRPYIQQRL----DEGAKLNHITRHLLGLFQGCPGGRRFR 309
Query: 311 R-------KADAAFQTCKTVKSFLEE 329
R K DA + S + E
Sbjct: 310 RHLSEHAHKEDAGLRLFDEALSLVRE 335
>gi|414172727|ref|ZP_11427638.1| tRNA dihydrouridine synthase A [Afipia broomeae ATCC 49717]
gi|410894402|gb|EKS42192.1| tRNA dihydrouridine synthase A [Afipia broomeae ATCC 49717]
Length = 319
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 170/299 (56%), Gaps = 16/299 (5%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMDWTD H R RL+++ A LYTEML II+ G+ R L+F +HP+ LQ+GGSN
Sbjct: 1 MMDWTDRHCRVFHRLLTRRARLYTEMLTTGAIIH--GDRRRLLSFDASEHPVALQLGGSN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA+A + + YDEIN+N GCPS +V G G FG LM +P+ V E ++ + +
Sbjct: 59 PRDLAEAARIGEDFGYDEINMNVGCPSDRVKG-GNFGACLMAEPQLVAECVAAMKQAVRI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV+VKCRIG+DD D L D + + + + ++H+RKA LNG+SP ENR IPPL Y
Sbjct: 118 PVTVKCRIGIDDQDPEVAL-DTLSRAVIAAGSDALVVHARKAWLNGLSPKENRDIPPLHY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV---MVGRAAYQNPWYTLGHVDT 252
+ Y L PD+ +NGGI ++ AA ++ HV M+GRAAYQ PW L VD
Sbjct: 177 DRVYRLKAALPDVPVVINGGITSI----AAAKQHLDHVDGAMLGRAAYQEPWRLLS-VDP 231
Query: 253 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
++G + T +E Y + L R H + + L+ FH PG F+R
Sbjct: 232 ELFGEAAPHATMHDAIEALMPYVERELAA--GTRLH--SITRHLVGAFHGVPGARAFRR 286
>gi|161831190|ref|YP_001596802.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 331]
gi|161763057|gb|ABX78699.1| tRNA dihydrouridine synthase A [Coxiella burnetii RSA 331]
Length = 328
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 177/308 (57%), Gaps = 16/308 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
S+APMM TD H+R R IS+H LYTEM+ ++ +G R L +SPE+HP+ LQ
Sbjct: 6 ISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALL--KGKQWRCLDYSPEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ +LA LA +DEINLN GCPS +V G FG L+ + + V + ++ ++
Sbjct: 64 VGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIA-GRFGACLLKEAELVADCVAAMS 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A N+PVSVK R GVDD DSY L F+ V+ + R FIIH+RKA L G+SPAENRT+
Sbjct: 123 AEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAE-AGCRIFIIHARKAWLKGLSPAENRTV 181
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DFP L +NGGI T++ +N LR+ VM+GR AY NP +
Sbjct: 182 PPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLRE-VDGVMIGREAYANPLFCAAFD 240
Query: 251 DTA-------IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
D + + + LT ++V+ +Y Y + N P + + + L F +
Sbjct: 241 DLSKPVFSLGVADKKQTPLTPKRVLLRYLPY---MAKQLANGVP-LYAMTRHLNGLFQGQ 296
Query: 304 PGNGLFKR 311
PG ++R
Sbjct: 297 PGAKKWRR 304
>gi|220923671|ref|YP_002498973.1| tRNA-dihydrouridine synthase A [Methylobacterium nodulans ORS 2060]
gi|219948278|gb|ACL58670.1| TIM-barrel protein, yjbN family [Methylobacterium nodulans ORS
2060]
Length = 337
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 180/335 (53%), Gaps = 22/335 (6%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
L W FSVAPMMDWTD H R R++S A LYTEM+ +++ G +R + F P +H
Sbjct: 11 LSGWRFSVAPMMDWTDRHCRAFHRVLSARARLYTEMVTTGAVLH--GPRERLIGFDPAEH 68
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ +Q+GGS+ LA + +A Y Y E+NLN GCPS +V G FG LM +P VGE
Sbjct: 69 PVAIQLGGSDPGELAASARIAEGYGYAEVNLNVGCPSDRVQ-DGRFGACLMREPALVGEC 127
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
++ + A +PV+VKCRIGVDD D L D + + ++H+RKA L G+SP
Sbjct: 128 VAAMKAAVAIPVTVKCRIGVDDQDPEAAL-DALTASVRAAGVDGLVVHARKAWLQGLSPK 186
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNP 243
ENR IPPL Y + L PDL +NGG+N++ + A L AH VM+GRAAY P
Sbjct: 187 ENRDIPPLDYPRVHRLKAAHPDLPIAINGGLNSLAQAQAQL---AHVDGVMLGRAAYAEP 243
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
LG VD +G P+ VE Y Y A LG R H + + +L F+
Sbjct: 244 ALLLG-VDPEFFGTPAPVAGPFAAVEAYLPYIAARLGE--GIRLHA--MTRHMLGLFNGR 298
Query: 304 PGNGLFKR-------KADAAFQTCKTVKSFLEETI 331
PG F+R +A+A + SF+ +
Sbjct: 299 PGARAFRRHLSTEGLRANAGLGVLREAVSFVSREM 333
>gi|238764115|ref|ZP_04625069.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
gi|238697652|gb|EEP90415.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
Length = 343
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 174/301 (57%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL++K LYTEM+ II+ +G+ +LA+S + HP+ LQ
Sbjct: 22 FSVAPMLDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGD---YLAYSEQDHPVALQ 78
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V + + +
Sbjct: 79 LGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMAEANLVADCIKAMR 137
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY LC+F+ V+ F IH+RKA L+G+SP ENR +
Sbjct: 138 DVVSIPVTVKTRIGIDELDSYEFLCEFVQTVAGRGECDIFTIHARKAWLSGLSPKENREV 197
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP L V
Sbjct: 198 PPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNP-SILTQV 255
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++ + + + +E Y + L + ++ + + +L F PG ++
Sbjct: 256 DRELFDPNAPVVDSVKAIEALYPYIEQEL----SRGAYLGHITRHILGIFQGIPGARQWR 311
Query: 311 R 311
R
Sbjct: 312 R 312
>gi|389696345|ref|ZP_10183987.1| tRNA dihydrouridine synthase A [Microvirga sp. WSM3557]
gi|388585151|gb|EIM25446.1| tRNA dihydrouridine synthase A [Microvirga sp. WSM3557]
Length = 334
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 185/343 (53%), Gaps = 24/343 (6%)
Query: 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69
+F+VAPMMDWTD H R R++S+ A LYTEM+ +I+ G +R L FS +HP+ +
Sbjct: 5 FFTVAPMMDWTDRHCRAFHRVMSRRARLYTEMVTTGAVIH--GPRERLLGFSAVEHPVAV 62
Query: 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129
Q+GGS+ ++LA+A + + YDEINLN GCPS +V +G FG LM +P VGE ++ +
Sbjct: 63 QLGGSDPEDLAQAARICAEFGYDEINLNVGCPSDRVQ-NGRFGACLMQEPVLVGECVAAM 121
Query: 130 AANTNVPVSVKCRIGVDDHDS---YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
A ++PV+VKCRIGVDD D+ N+L D + +H+RKA L G+SP E
Sbjct: 122 KAAVSLPVTVKCRIGVDDQDTEEALNRLTDCVVAAGC----DELTVHARKAWLKGLSPKE 177
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR IPPL Y Y L + PDL +NGGI T DE+ L K VM+GR AY P
Sbjct: 178 NRDIPPLDYNRVYRLKQARPDLPIAINGGIKTWDEIREHL-KHMDGVMLGRVAYHEPEIL 236
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L VD ++G + V+ Y+ Y A L + ++ + +L F PG
Sbjct: 237 LA-VDPELHGEEPPVADGFEAVDAYEPYIAAQLA----KGERLSNITRHMLGLFTGRPGA 291
Query: 307 GLFKR-------KADAAFQTCK-TVKSFLEETIVAIPDSVLDS 341
++R K A Q + V E + A P + L S
Sbjct: 292 RAYRRHLATEAVKPGANLQVLREAVAQVSREIVAATPMAALAS 334
>gi|85714507|ref|ZP_01045495.1| dihydrouridine synthase TIM-barrel protein yjbN [Nitrobacter sp.
Nb-311A]
gi|85698954|gb|EAQ36823.1| dihydrouridine synthase TIM-barrel protein yjbN [Nitrobacter sp.
Nb-311A]
Length = 341
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 192/349 (55%), Gaps = 27/349 (7%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMM+WTD H R RL+++ A LYTEML +I+ G DR L FS +HP+ LQ
Sbjct: 3 FSVAPMMEWTDRHCRVFHRLLARKARLYTEMLTTGAVIH--GERDRLLGFSDVEHPVALQ 60
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA + ++ + YDEINLN GCPS +V G FG LM +P V E ++ +
Sbjct: 61 LGGSNPVDLATSAKIGEDFGYDEINLNVGCPSDRVK-DGRFGACLMAEPDVVAETVNAMK 119
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VKCRIG+DD D+ +L F KV + + I+H+RKA L G+SP ENR I
Sbjct: 120 RAVSVPVTVKCRIGIDDQDTETELDIFARKVRA-AGVDTLIVHARKAWLQGLSPKENRDI 178
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYTLG 248
PPL Y+ Y L P L +NGGI + E L AH VM+GRAAYQ PW L
Sbjct: 179 PPLDYDRVYRLKASLPGLPIVINGGIGGISEAKQHL---AHVDGVMLGRAAYQEPWRLL- 234
Query: 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
VD+ ++G + T +Q +E Y + L + + + + L+ FH PG
Sbjct: 235 EVDSQLFGEAAPPKTMKQALEAMMPYIEDQLA----DGARLHSISRHLIGAFHGVPGARA 290
Query: 309 FKR-------KADAAFQTCKTVKSFLEETIVAIPDSVL--DSPIEEAPR 348
F+R KA A + + ++E+ P S + D+ E PR
Sbjct: 291 FRRYLAGNAVKAGAGIDVLQEAIALVDES----PASSVKADTGFEGGPR 335
>gi|424882136|ref|ZP_18305768.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518499|gb|EIW43231.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 333
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 176/305 (57%), Gaps = 14/305 (4%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIV 68
P F+VAPM+DWTD H R R IS+ A LYTEM+ A+ II+ G DR L +HP+
Sbjct: 6 PIFAVAPMIDWTDRHCRYFHRQISREALLYTEMVVADAIIH--GPRDRLLGHDCAEHPLA 63
Query: 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
LQ+GGS+ LA+A ++A Y YDEINLN GCPS +V G FG LML P+ V E ++
Sbjct: 64 LQLGGSDPAKLAEAVKIAEPYLYDEINLNVGCPSDRVQS-GTFGACLMLTPETVAECIAA 122
Query: 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR 188
+ VPV+VKCRIGVDD + L + + +V + IH+RKA L G+SP ENR
Sbjct: 123 MKRVATVPVTVKCRIGVDDQEPEQALPELLTRVLD-AGADAIWIHARKAWLKGLSPKENR 181
Query: 189 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQNPWYT 246
IPPL YE Y + + +PD+ +NGGI T+DE L AH VM+GRAAYQN
Sbjct: 182 EIPPLDYEIVYRMKQRWPDVFIGINGGIRTLDEAATHL---AHVDGVMLGRAAYQNA-AI 237
Query: 247 LGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN 306
L +D +GAP + + + +Y + + + G ++ V + ++ F PG
Sbjct: 238 LADIDQRFFGAPVAEPDWEALCNRMMVYAERHIASGGR----LQHVARHMVGLFTGLPGA 293
Query: 307 GLFKR 311
+++
Sbjct: 294 RRYRQ 298
>gi|431805950|ref|YP_007232851.1| tRNA-dihydrouridine synthase A [Liberibacter crescens BT-1]
gi|430799925|gb|AGA64596.1| putative tRNA-dihydrouridine synthase A [Liberibacter crescens
BT-1]
Length = 349
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 177/316 (56%), Gaps = 20/316 (6%)
Query: 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
YL F+VAPM+DW+D HYR ARL+SK+A LYTEM+ A+ I+ +GN R L+FSP++H
Sbjct: 18 YLYKVFAVAPMLDWSDRHYRFFARLLSKNALLYTEMIVADAIL--KGNKQRLLSFSPQEH 75
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQIGG+N LA A ++ + YDEINLN GCPS KV G FG LML P+ + E
Sbjct: 76 PLALQIGGANPVTLATAAKIGEEFGYDEINLNVGCPSNKVQS-GSFGACLMLLPEHIMEC 134
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ I ++PV++KCRIGVDD L + I V + S IH+RKA L G+SP+
Sbjct: 135 VYAIKKVVSIPVTIKCRIGVDDQVPELALRNLIKSVKAAS-VDAVWIHARKAFLKGLSPS 193
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR +PPL YE Y + R+ PDL LNGG+ V L VM+GRA+YQN
Sbjct: 194 ENRKVPPLNYEIIYEIKRENPDLFIGLNGGLKNVQHTLQVLPH-VDGVMLGRASYQNS-T 251
Query: 246 TLGHVD-------TAIYGAPSSGLTRR---QVVEKYQIYGDAILGTYGNNRPHVRDVMKP 295
L VD T + L + +V Y L T G +R V++
Sbjct: 252 ILTSVDQYFINPLTGSHPVIGEALDKNFWDEVCTSMISYASQHLNTGG----QLRQVVRH 307
Query: 296 LLHFFHSEPGNGLFKR 311
+L F PG ++R
Sbjct: 308 MLGLFQGFPGVQRYRR 323
>gi|434387108|ref|YP_007097719.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
gi|428018098|gb|AFY94192.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
Length = 311
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 177/296 (59%), Gaps = 10/296 (3%)
Query: 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN 75
MMD TD H R R IS+ LYTEM+ + I++ G+ + L F+ +HP+ LQIGG N
Sbjct: 1 MMDRTDRHCRYFLRQISRRTLLYTEMVTSMAILH--GDKYKLLGFARSEHPLALQIGGDN 58
Query: 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135
+LA+ ++A + YDE+NLN GCPS +V +G FG LML P+ V E ++ + T +
Sbjct: 59 PRDLAECAQIAADFGYDEVNLNVGCPSSRVQ-NGNFGACLMLQPERVAECIAAMIDATKI 117
Query: 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195
PV++K RIGVD+ DSY L F+ VS R F IH+RKA L G+SP ENR IPPL+Y
Sbjct: 118 PVTIKHRIGVDEVDSYEDLVKFVSIVSQTGCQR-FSIHARKAWLQGLSPKENREIPPLRY 176
Query: 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY 255
E + L ++FP L+ +NGG + +++V L+ VM+GRA Y NP Y L +VD IY
Sbjct: 177 EDVHRLKQEFPHLSIEINGGFSNLEQVQTQLQI-VDAVMIGRAIYDNP-YLLANVDREIY 234
Query: 256 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 311
G + +R ++V Y + + + + + + +L FH +PG+ ++KR
Sbjct: 235 GEDTLPPSRDRIVTNMLSY----IEEWTSKGLKLNSITRHMLQLFHGQPGSRIWKR 286
>gi|359393503|ref|ZP_09186556.1| tRNA-dihydrouridine synthase A [Halomonas boliviensis LC1]
gi|357970750|gb|EHJ93195.1| tRNA-dihydrouridine synthase A [Halomonas boliviensis LC1]
Length = 357
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 173/310 (55%), Gaps = 9/310 (2%)
Query: 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFS 61
+ R L FSVAPMMDWT +R LAR ++K A LYTEM+ I++ +RFL +S
Sbjct: 15 IVRPELDRTFSVAPMMDWTTRDFRALARTLTKRALLYTEMVTTGAILHGTPR-ERFLGYS 73
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
+HP+ LQ+GGS+ LA+ +A A+ YDE+NLN GCPS +V + G LM P+
Sbjct: 74 EVEHPLALQLGGSDAGELAECAAIAEAWGYDEVNLNVGCPSDRVQ-NNMIGACLMGYPEK 132
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG 181
V EA+ + A ++PV+VKCRIG+DD D L FI V+ + F +H+RKA L G
Sbjct: 133 VAEAVRAMQAVVSIPVTVKCRIGIDDQDEDADLERFIAIVAD-AGCEVFTVHARKAWLQG 191
Query: 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241
+SP +NR +PPL Y + L + P+L +NGGI T+ E A L VMVGR AYQ
Sbjct: 192 LSPKQNRDVPPLNYPRVHRLKQSRPELHIGINGGIKTLAECQAQLTH-VDSVMVGREAYQ 250
Query: 242 NPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH 301
NPW G VD ++G +R + ++ Y L + + + + LL F
Sbjct: 251 NPWLLAG-VDEQLFGEQGPAASRLDAAKAFRPYIQQRL----DEGAKLNHITRHLLGLFQ 305
Query: 302 SEPGNGLFKR 311
PG F+R
Sbjct: 306 GCPGGRRFRR 315
>gi|259418773|ref|ZP_05742690.1| tRNA-dihydrouridine synthase A [Silicibacter sp. TrichCH4B]
gi|259344995|gb|EEW56849.1| tRNA-dihydrouridine synthase A [Silicibacter sp. TrichCH4B]
Length = 336
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 150/246 (60%), Gaps = 4/246 (1%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWT R L RL+SK LYTEM+ A ++ +G L +HP+ LQ
Sbjct: 17 LSVAPMMDWTTRECRYLHRLLSKETLLYTEMVTAPALV--RGRALHLLDHDVSEHPVALQ 74
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ D LA+A +L YDEINLNCGCPS +V G FG LM P+ V + M+ +A
Sbjct: 75 LGGSDPDELAEAAKLGAEAGYDEINLNCGCPSDRVQS-GAFGAILMQSPELVADCMAAMA 133
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+V V+VKCRIGVDD + + L +F+ K+ + R IH+RKA L G+SP ENR I
Sbjct: 134 QAVDVEVTVKCRIGVDDQNPQDVLPEFLEKIRAAGVDR-VTIHARKAWLKGLSPKENRDI 192
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE + + FPD+ ++NGGI T+++ A L +G VM+GRAAY P L
Sbjct: 193 PPLDYELVHQMKASFPDMHISINGGIATLEDAQAQLARGLDGVMIGRAAYHQPADVLCAA 252
Query: 251 DTAIYG 256
D I+G
Sbjct: 253 DPRIFG 258
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,183,945,784
Number of Sequences: 23463169
Number of extensions: 261373057
Number of successful extensions: 595410
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2707
Number of HSP's successfully gapped in prelim test: 5621
Number of HSP's that attempted gapping in prelim test: 577170
Number of HSP's gapped (non-prelim): 9405
length of query: 376
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 232
effective length of database: 8,980,499,031
effective search space: 2083475775192
effective search space used: 2083475775192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)