BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017176
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDTDPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + I D
Sbjct: 300 ARQWRRYLSENAHKAGADAAVLEQALKLIADK 331
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 248 bits (632), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 191/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ S RRQ+VE+ Y + L N ++ + + +L F + PG ++
Sbjct: 241 DQELFGSQSPIKKRRQIVEEMYPYIEQQLA----NGAYLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGIEVLQQALAKIPQEL 324
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/332 (41%), Positives = 190/332 (57%), Gaps = 11/332 (3%)
Query: 7 LPPW-FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQH 65
LP + FS+APM+DWTD H R RL+S+ LYTEM+ II+ +G+ +LA+S E+H
Sbjct: 10 LPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGD---YLAYSEEEH 66
Query: 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEA 125
P+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V +
Sbjct: 67 PVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADC 125
Query: 126 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP
Sbjct: 126 VKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPK 185
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245
ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQNP
Sbjct: 186 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQNPG- 243
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
L VD I+GA ++ VV Y + L + ++ + + +L F PG
Sbjct: 244 ILAAVDREIFGADTTDADPVAVVRAMYPYIEREL----SQGAYLGHITRHMLGLFQGIPG 299
Query: 306 NGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
++R + LE+ + + D
Sbjct: 300 ARQWRRYLSENAHKAGADVAVLEQALKLVADK 331
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 184/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + +++ +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIEHELSQGTY------LGHIIRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 192/328 (58%), Gaps = 10/328 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL++K LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGD---FLAYNEEEHPLALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ +
Sbjct: 64 LGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMK 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR I
Sbjct: 123 EVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ+P Y L V
Sbjct: 183 PPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQSP-YLLASV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D ++G+ + R ++VE+ Y +A L ++ + + +L F + PG ++
Sbjct: 241 DQELFGSNAPVKKRSEIVEEMYPYIEAQLA----KGAYLGHITRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIPDSV 338
R + L++ + IP +
Sbjct: 297 RHISENAHKPGSGLEVLQDALAKIPKEL 324
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300
Query: 309 FKR 311
++R
Sbjct: 301 WRR 303
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 183/303 (60%), Gaps = 14/303 (4%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD H R RL+S++ LYTEM+ II+ +G+ +LA+S E+HP+ LQ
Sbjct: 14 FSIAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + +
Sbjct: 71 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR I
Sbjct: 130 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQNP L V
Sbjct: 190 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAV 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D I+G+ + VV Y + L GTY + + + +L F PG
Sbjct: 248 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 301
Query: 309 FKR 311
++R
Sbjct: 302 WRR 304
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 184/325 (56%), Gaps = 10/325 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPM+DWTD H R RL+S LYTEM+ II+ +G+ FLA++ E+HP+ LQ
Sbjct: 7 LSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGD---FLAYNQEEHPVALQ 63
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ +
Sbjct: 64 FGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMR 122
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR I
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQNP Y L V
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEV 240
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D I+G + R QV+ + Y + L + H+ + + +L F + PG ++
Sbjct: 241 DQQIFGLETPVKKRSQVIHEMMPYIEREL----SQGTHLGHMTRHMLGLFQNMPGARQWR 296
Query: 311 RKADAAFQTCKTVKSFLEETIVAIP 335
R +E+ + IP
Sbjct: 297 RHISENAHKPGAGLEVVEQALAKIP 321
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 18/330 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FS+APM+DWTD HYR ARL+S +A LYTEM+ I++ +G+ +L ++ E+HP+ LQ
Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGD---YLTYNQEEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + +
Sbjct: 73 LGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMK 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR I
Sbjct: 132 QVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMA-KGCGEFIIHARKAWLQGLSPKENREI 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQNP Y L V
Sbjct: 191 PPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQNP-YMLAQV 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D + G+ + ++R V+E Y +A L G + + + ++ F PG ++
Sbjct: 249 DQVLCGSTKAVMSREAVIEAMLPYIEAHLQVGG----RLNHITRHMIGLFQGLPGARAWR 304
Query: 311 R-------KADAAFQTCKTVKSFLEETIVA 333
R K A + K ++ +VA
Sbjct: 305 RYLSENAHKNGAGIEVVKLAYQSVQTDLVA 334
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 238 bits (608), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 191/326 (58%), Gaps = 22/326 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R S+HA LYTEM+ II+ + + L FSP ++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYD---HLEFSPAENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S +
Sbjct: 70 LGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV+VK RIG+DD DSY LC+F+ KV + + FIIH+RKA L+G+SP ENR I
Sbjct: 129 TEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHE-AGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQNP LG++
Sbjct: 188 PPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQNP-SLLGYI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D A++ +T R+ VEK Y + L G Y N+ V++ +L F S G
Sbjct: 246 DQALFDPTCPVVTPREAVEKMFPYIEQQLSQGVYLNH------VVRHMLGAFQSCKGARQ 299
Query: 309 FKR-------KADAAFQTCKTVKSFL 327
++R KA A + + SF+
Sbjct: 300 WRRYLSENAHKAGAGLEVVEKALSFV 325
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 176/301 (58%), Gaps = 10/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMD TD H+R R +++H LYTEM+ A+ I++ G+ R L FSPE+ P+ LQ
Sbjct: 13 LSVAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILH--GDRQRLLNFSPEEKPVALQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GG + LA+ + + YDEINLN GCPS +V G FG LM P V + +S +
Sbjct: 71 LGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQ 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+PV+VK RIG+D DSY L F+ V++ R F +H+RKA L G+SP ENRTI
Sbjct: 130 KAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQR-FTVHARKAWLQGLSPKENRTI 188
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+YE Y L +DFP L +NGGI +++ L VMVGRAAY+NP Y V
Sbjct: 189 PPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHL-SHVDAVMVGRAAYENP-YLFATV 246
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D IY + +R +++E+ Y + L +G+ + + + LL F+ +P ++
Sbjct: 247 DRDIYHKTNLVPSRAEIIERMLPYVEERL-RHGDR---LNQITRHLLSLFNGQPRAKFWR 302
Query: 311 R 311
R
Sbjct: 303 R 303
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 185/325 (56%), Gaps = 18/325 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPM+DWT H R R SKHA LYTEM+ A II+ + + L F +++P+ LQ
Sbjct: 13 FSVAPMLDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYD---HLDFDLQENPVALQ 69
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + +
Sbjct: 70 LGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQ 128
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR I
Sbjct: 129 SAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQG-KGCQEFIIHARKAWLSGLSPKENREI 187
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQNP LG +
Sbjct: 188 PPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQI 245
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A++ + +T + VE Y + L + H+ +++ +L F + G ++
Sbjct: 246 DQALFDPNAPIVTAHEAVESMLPYIEQQL----SQGIHLNHIVRHILGAFQNCKGARQWR 301
Query: 311 R-------KADAAFQTCKTVKSFLE 328
R K A + +T SF+E
Sbjct: 302 RYLSENAFKQGAGIEVVETALSFVE 326
>sp|Q7VNV2|DUSA_HAEDU tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusA PE=3 SV=1
Length = 323
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 176/303 (58%), Gaps = 16/303 (5%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
F+VAPM+DWT H R R S+ A LYTEM+ A I++ + +L L + P + P+ LQ
Sbjct: 10 FAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDL---LEYDPAEQPVALQ 66
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA +L A Y EINLN GCPS +V +G FG LM + V + + +
Sbjct: 67 LGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQ 125
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
++PV++K RIG+D DSY LCDFI K+ S + FI+H+RKA L+G+SP ENR I
Sbjct: 126 DVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS--QDFIVHARKAWLSGLSPKENREI 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL YE Y L RDFP L ++NGGI T+DE+ L K VMVGR AYQNP LG +
Sbjct: 184 PPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTK-VDGVMVGREAYQNP-ALLGEI 241
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGL 308
D ++ +T R VE Y + L G Y N+ +++ +L F + G
Sbjct: 242 DQQLFDQNQPLITARIAVENMLPYIEQQLSKGVYLNH------IVRHMLGAFQNCKGARQ 295
Query: 309 FKR 311
++R
Sbjct: 296 WRR 298
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 183/337 (54%), Gaps = 10/337 (2%)
Query: 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQ 64
QY FSVAPM+DWTD H R RL++K A LYTEM+ II+ + + +LA+S +
Sbjct: 16 QYPLQRFSVAPMLDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKAD---YLAYSEQD 72
Query: 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE 124
HP+ LQ+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V +
Sbjct: 73 HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVAD 131
Query: 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184
+ + +PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP
Sbjct: 132 CIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSP 191
Query: 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244
ENR +PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQNP
Sbjct: 192 KENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQNPG 250
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
L VD ++ + + + +E Y + L + ++ + + +L F P
Sbjct: 251 -ILTQVDRELFDPNAPVVDSVKAIEALYPYIEQEL----SQGAYLGHITRHILGIFQGIP 305
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS 341
G ++R S +EE + + S +S
Sbjct: 306 GARQWRRHLSENAHKPGAGVSVVEEALALVSPSYYES 342
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA
PE=3 SV=1
Length = 332
Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 163/279 (58%), Gaps = 13/279 (4%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
L FSVAPMMDWTD H R R +S+H LYTEM+ +++ G+ RFL + +HP
Sbjct: 12 LSRRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLH--GDRQRFLRYDECEHP 69
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+ LQ+GGS LA LA YDE+NLN GCPS +V H G LM P V + +
Sbjct: 70 LALQLGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQ-HNMIGACLMGHPALVADCV 128
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ + V+VK RIG++ DSY +LCDF+ +V + R F +H+R A+L G+SP E
Sbjct: 129 KAMLDAVEIAVTVKHRIGINGRDSYAELCDFVGQVRE-AGCRSFTVHARIAILEGLSPKE 187
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246
NR +PPL+YE L +DFPDL LNGGI T++ L+ VM+GR AY NP Y
Sbjct: 188 NREVPPLRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQT-FDGVMLGREAYHNP-YL 245
Query: 247 LGHVDTAIYGAPSSGLTR-------RQVVEKYQIYGDAI 278
L VD+ ++G+ + L+R R +E++Q G A+
Sbjct: 246 LAAVDSQLFGSEAPPLSRSEALLRLRPYIERHQAEGGAM 284
>sp|Q8P3X4|DUSA_XANCP tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusA PE=3 SV=1
Length = 335
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A +I+ G+ R + F +HP+ LQ
Sbjct: 15 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIH--GDRQRLIGFDAVEHPLALQ 72
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A ++A A+ YDEINLNCGCPS +V G FG LM +P V + ++ +
Sbjct: 73 LGGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVAAMC 131
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T +PV+VKCR+GVDD D Y FI +V ++H+R A L G+SP ENR +
Sbjct: 132 AATALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAM-VVVHARNAWLKGLSPKENREV 190
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L ++ P L LNGGI +V+ A L+ VM+GRAAY +P Y L +
Sbjct: 191 PPLRYDWAYRLKQERPALPVVLNGGIASVEASLAHLQH-TDGVMLGRAAYHDP-YVLHQL 248
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
+ A+ G P R +++ YQ Y A L + ++ + + +L FH +PG +F+
Sbjct: 249 EAALSGRPER--ARADLLQAYQPYVQAQL----DQGLALKHMTRHILGLFHGQPGGRVFR 302
Query: 311 R 311
+
Sbjct: 303 Q 303
>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain
KT2440) GN=dusA PE=3 SV=1
Length = 336
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 158/264 (59%), Gaps = 6/264 (2%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
FSVAPMMDWTD H R RL+S+ LYTEM+ +++ + RFL +HP+ LQ
Sbjct: 20 FSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAH--RFLRHDASEHPLALQ 77
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS +LA LA YDE+NLN GCPS +V + G LM P V + + +
Sbjct: 78 LGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPALVADCVKAMR 136
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ PV+VK RIG++ DSY +L DF+ +V + R F +H+R A+L G+SP ENR I
Sbjct: 137 DAVSTPVTVKHRIGINGRDSYAELSDFVGQVRE-AGCRSFTVHARIAILEGLSPKENREI 195
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y+ L RDFPDL LNGGI T+DE A L + VM+GR AY NP Y L V
Sbjct: 196 PPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHL-ETFDGVMLGREAYHNP-YLLAEV 253
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIY 274
D ++G+ + ++R + + + + Y
Sbjct: 254 DQQLFGSDAPVVSRSEALAQLRPY 277
>sp|Q884G7|DUSA_PSESM tRNA-dihydrouridine synthase A OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusA PE=3 SV=1
Length = 336
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 183/332 (55%), Gaps = 17/332 (5%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPE 63
R L FSVAPMMDWTD+H R RL+S A LYTEM+ +++ G+ +RFL
Sbjct: 13 RPGLSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLH--GDRERFLRHDET 70
Query: 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG 123
+HP+ LQ+GGS LA LA A YDE+NLN GCPS +V + G LM P+ V
Sbjct: 71 EHPLALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPQLVA 129
Query: 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183
+ + + +PV+VK RIG++ DSY +LCDF+ V + + F +H+R A+L G+S
Sbjct: 130 DCVKAMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHD-AGCQSFTVHARIAILEGLS 188
Query: 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243
P ENR IPPL+Y+ L DFP+L LNGGI T+++ + L+ VM+GR AY NP
Sbjct: 189 PKENRDIPPLRYDVVAQLKTDFPELEIVLNGGIKTLEQCSEHLQT-FDGVMLGREAYHNP 247
Query: 244 WYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSE 303
Y L VD ++G+ + ++R +E + Y A + + GN R ++ L F
Sbjct: 248 -YLLAQVDQQLFGSVAPVISRHAALESMRPYIAAHIASGGNMHHVTRHMLGLGLGF---- 302
Query: 304 PGNGLFKR-------KADAAFQTCKTVKSFLE 328
PG F++ KA+ FLE
Sbjct: 303 PGARRFRQLLSVDIHKAENPLLLLDQAAKFLE 334
>sp|Q9PGB5|DUSA_XYLFA tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain 9a5c)
GN=dusA PE=3 SV=1
Length = 340
Score = 212 bits (539), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 185/333 (55%), Gaps = 23/333 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+WTD + R R+++ A LYTEM+ A+ +IY G+ +R L F+ + P+ LQ
Sbjct: 18 LSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIY--GDRERLLGFASVEQPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +A
Sbjct: 76 LGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQA-GSFGARLMREPALVADCVAAMA 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +VPV+VKCR+GV++ D Y + F+ VS S +R ++H+R A L G+SP ENR I
Sbjct: 135 AVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQNPW 244
PPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ+P
Sbjct: 195 PPLRYDWVYRLKRERPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQDP- 246
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L D A+ AP + + + +R +++ L FH +P
Sbjct: 247 YILHQFDCALSNAPLLPRALLLRALRPYVE------VWLEQGLTLRHIVRHLFGLFHGQP 300
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAIPDS 337
G +F++ Q S +E+ + I D
Sbjct: 301 GGRVFRQVLTQGGQRSDADWSLVEQALSIIEDQ 333
>sp|Q87AY2|DUSA_XYLFT tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1
Length = 332
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 188/330 (56%), Gaps = 23/330 (6%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMM+WTD + R R+++ A LYTEM+ A+ +IY G+ +R L F+ + P+ LQ
Sbjct: 18 LSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIY--GDRERLLGFASVEQPVALQ 75
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +A
Sbjct: 76 LGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQA-GSFGACLMREPALVADCVAAMA 134
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A +VPV+VKCR+GV++ D Y + F+ V S +R ++H+R A L G+SP ENR I
Sbjct: 135 AVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREI 194
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQNPW 244
PPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ+P
Sbjct: 195 PPLRYDWVYRLKRECPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQDP- 246
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEP 304
Y L A+ AP R ++ + Y +A L +R +++ LL FH +P
Sbjct: 247 YILHQFYCALSNAPVL--PRALLLRALRPYVEAWL----EQGVTLRHIVRHLLGLFHGQP 300
Query: 305 GNGLFKRKADAAFQTCKTVKSFLEETIVAI 334
G +F++ Q S +E+ + I
Sbjct: 301 GGRVFRQVLTQGGQRSDADWSLVEQALSII 330
>sp|Q8PFF8|DUSA_XANAC tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusA PE=3 SV=1
Length = 334
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 179/301 (59%), Gaps = 12/301 (3%)
Query: 11 FSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
SVAPMMDWTD H R RL++ A LYTEM+ A +I+ G+ R + F P +HP+ LQ
Sbjct: 14 LSVAPMMDWTDRHCRVFHRLLAPSARLYTEMVHANAVIH--GDRARLIGFDPVEHPLALQ 71
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
+GGS+ LA+A +A + +DEINLNCGCPS +V G FG LM +P V E ++ +
Sbjct: 72 LGGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQA-GRFGACLMREPALVAECVAAMC 130
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
A T++P++VKCR+GVDD D Y F+ +V + ++H+R A L G+SP ENR +
Sbjct: 131 AATHLPITVKCRLGVDDDDDYALFARFVDQVVAAG-AAMVVVHARNAWLKGLSPKENREV 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV 250
PPL+Y++ Y L ++ P L LNGGI V+ A L+ A VM+GRAAY +P Y L +
Sbjct: 190 PPLRYDWAYRLKQERPGLPVVLNGGIVAVEPAIAHLQH-ADGVMLGRAAYHDP-YVLHCL 247
Query: 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFK 310
D A+ P R ++ YQ Y ++ L ++ + + +L FH +PG F+
Sbjct: 248 DAALNQRPEQ--PRESLLRAYQPYVESQLAQGLG----LKHMTRHVLGLFHGQPGGRAFR 301
Query: 311 R 311
+
Sbjct: 302 Q 302
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM TD +R L + S + +EM+A++ +I + R + PEQ P+ +Q+
Sbjct: 16 LAPMSGVTDLPFRRLVKQ-SGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLA 74
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
G D +A+A +L I++N GCP KV +G G SLM D + A
Sbjct: 75 GCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVV-NGHAGSSLMRDEALAARILEATAKA 133
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 190
+PV++K R G DD S N + +++ + +H +R+ NG +
Sbjct: 134 VTIPVTLKMRKGWDD-SSLN--APRLARIAEECGIKLVTVHGRTREQFYNGTA------- 183
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWY 245
+ + + +++ + +NG I + D V+ AL GA VM+GR AY PW+
Sbjct: 184 ---DWSFIRS-VKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRPWF 235
>sp|O31546|DUS2_BACSU Probable tRNA-dihydrouridine synthase 2 OS=Bacillus subtilis
(strain 168) GN=dus2 PE=3 SV=1
Length = 325
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 21/248 (8%)
Query: 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFS 61
R+ P+F +APM D TD +R + + +TE +E+ + G ++ L F+
Sbjct: 7 RELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRLTFT 66
Query: 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKF 121
++ PIV I G +N K + + +++N GCP P VAG+G G L+ P
Sbjct: 67 EDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGK-GSGLICRPAV 125
Query: 122 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALL 179
E + A +PVSVK R+G D D + + I K +++LS IH R
Sbjct: 126 AAELIQAAKAG-GLPVSVKTRLGYTDVDEWREWLTHILKQDIANLS------IHLRTRAE 178
Query: 180 NGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVG 236
A IP +K LRD PD T+NG I + + A + G +M+G
Sbjct: 179 MSKVDAHWELIPEIKK------LRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIG 232
Query: 237 RAAYQNPW 244
R + NP+
Sbjct: 233 RGIFTNPF 240
>sp|Q9ZLB6|DUS_HELPJ Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain J99) GN=dus PE=3 SV=1
Length = 328
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 20/272 (7%)
Query: 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69
W +AP+ +TD +R++ + +EM+++ +++Y + L SP + +
Sbjct: 8 WLFLAPLAGYTDLPFRSVVKKFGVDV-TTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMA 66
Query: 70 QIGGSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
QI GS + +A E NA ++ I+ NCGCP+PKVA HG G L+ D + E + V
Sbjct: 67 QISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGN-GSGLLKDLNHLVEILKV 125
Query: 129 IAANTNVPV-SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
I NTN + SVK R+G + ++ I + +P + ++H R + ++
Sbjct: 126 IRENTNKKITSVKVRLGFE-----KKIPKEIAHALNDAPVDYVVVHGR-------TRSDR 173
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW-- 244
+ YE AL++ NG I++V + L+ A +M+GRA + PW
Sbjct: 174 YQKDKIDYE-SIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIF 232
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 276
+ + + T + L + + YGD
Sbjct: 233 WQIRNNTTELPAVVKKDLVLEHFDKMVEFYGD 264
>sp|O25427|DUS_HELPY Probable tRNA-dihydrouridine synthase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=dus PE=3 SV=1
Length = 328
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 20/272 (7%)
Query: 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69
W +AP+ +TD +R++ + +EM+++ +++Y + L SP + +
Sbjct: 8 WLFLAPLAGYTDLPFRSVVKKFGVDV-TTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMA 66
Query: 70 QIGGSNLDNLAKATELANAYNY-DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128
QI GS + +A E NA + + I+ NCGCP+PKVA HG G L+ D + + +
Sbjct: 67 QISGSKESVVKEAVEKINALEHVNGIDFNCGCPAPKVANHGN-GSGLLKDLNHLVKLLKT 125
Query: 129 IAANTNVPV-SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN 187
I NT+ + SVK R+G + ++ I + +P + ++H R + ++
Sbjct: 126 IRENTSKKITSVKVRLGFE-----KKIPKEIAHALNDAPVDYVVVHGR-------TRSDK 173
Query: 188 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW-- 244
+ YE AL++ NG I++V + L+ A +M+GRAA + PW
Sbjct: 174 YQKDKIDYE-SIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRAALRAPWIF 232
Query: 245 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 276
+ + + T + L + + YGD
Sbjct: 233 WQIRNNTTKLPAVVKKDLVLEHFDKMVEFYGD 264
>sp|P67717|DUS_STAAN Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain N315) GN=dus PE=1 SV=1
Length = 328
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++HP
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|P67716|DUS_STAAM Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=dus PE=1 SV=1
Length = 328
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++HP
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 17/234 (7%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM TD +R L + ++EM++ ++ LA E +QI
Sbjct: 14 LAPMAGITDQPFRRLCSQLGA-GLTFSEMMSTNPDVWHTEKSRLRLAHHAEIGINAVQIA 72
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS +A+A ++ AY I++N GCP+ KV G +L+ +P+ V + +
Sbjct: 73 GSEPTEIAEAAKINVAYGAQIIDINMGCPAKKV-NKKMAGSALLREPQLVARILDAVVNA 131
Query: 133 TNVPVSVKCRIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+VPV++K R G D H ++ Q+ K + T H +R L NG AE +I
Sbjct: 132 VDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHG--RTRDCLFNG--QAEYESIK 187
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244
+K + ++ NG I + + L GA VM+GR ++ PW
Sbjct: 188 AVKQAVFMPII---------ANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPW 232
>sp|O53835|DUS_MYCTU Probable tRNA-dihydrouridine synthase OS=Mycobacterium tuberculosis
GN=dus PE=3 SV=1
Length = 389
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 35/353 (9%)
Query: 13 VAPMMDWTDNHYRTLARLISKH-----AWLYT-EMLAAETIIYQQGNLDRFLAFSPEQHP 66
+APM T+ +R L R + + + LY EM+ A +I + FS ++ P
Sbjct: 26 LAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESP 85
Query: 67 IVLQIGGSNLDNL-AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGE- 124
LQ+ + D A A +A D I++N GCP PKV G G +L + G+
Sbjct: 86 RSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGG-GAALPFKRRLFGQI 144
Query: 125 -AMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGI 182
A +V A T++PV+VK RIG+D D+++ D +++ +H+R A
Sbjct: 145 VAAAVRATEGTDIPVTVKFRIGID--DAHHTHLD-AGRIAEAEGAAAVALHARTAAQRYS 201
Query: 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A+ I LK +R P L NG I + D + G V++GR
Sbjct: 202 GTADWEQIARLKQH-----VRTIPVLG---NGDIYDAGDALAMMSTTGCDGVVIGRGCLG 253
Query: 242 NPWYTLGHVDTAIYGAPS-SGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300
PW + A G+P+ + T +V + + +G + +G ++ +RD+ K + +
Sbjct: 254 RPWL-FAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDK-GMRDIRKHIAWYL 311
Query: 301 HSEPGNGLFKRKADAAFQTCKTVKSFLE--ETIVAIPDSVLDSPIEEAPRGRE 351
H P R+A A +T + L+ + V PDS + RGR+
Sbjct: 312 HGFPAGSAL-RRALAMVKTFDELDCLLDRLDGTVPFPDSATGA------RGRQ 357
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 16/239 (6%)
Query: 14 APMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 73
+P+ TD +R L R + A LYTEM++A T I+ L + + P ++PI +Q+
Sbjct: 47 SPLSGVTDLVFRRLVRRYAPQAMLYTEMVSA-TEIHHLRTLPQVMEIDPRENPISIQLFD 105
Query: 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT 133
D +A+A + A A +++N GCP K+ G G SL+ P + + A
Sbjct: 106 CRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKG-GGSSLLRQPAVAEAIVKTVVAAV 164
Query: 134 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 193
+VPV+VK R+G DD + + +F ++ + + +H R A + I +
Sbjct: 165 DVPVTVKTRLGWDDGEI--NIVEFAQRLQD-AGAQMLTLHGRTRAQGYNGRARWQWIAKV 221
Query: 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVD 251
K ++ NG I +V+ A L + GA VM R + P + +G ++
Sbjct: 222 KQALTIPVI---------ANGDIFSVEAAIACLEETGADGVMCSRGSLGYP-FLVGEIE 270
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 71
+APM D TD +R L + + +EM+A+ +I + + ++ + + +Q+
Sbjct: 15 LAPMSDVTDLEFRKLVKRFG-AGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G D +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDEQLAAKIFEATVK 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+PV+VK RIG DD+ + + K+++ S + +H R
Sbjct: 133 AVKIPVTVKMRIGWDDN---TRNAPTLAKIAANSGVQMVTVHGR---------------- 173
Query: 192 PLKYEYYYA--------LLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQN 242
+ ++Y +++ + NG I + AL R GA +MVGR Y
Sbjct: 174 -TRCQFYSGNANWDFIRTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGK 232
Query: 243 PW 244
PW
Sbjct: 233 PW 234
>sp|Q6GKK9|DUS_STAAR Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MRSA252) GN=dus PE=3 SV=1
Length = 328
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q8NYV4|DUS_STAAW Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MW2) GN=dus PE=3 SV=1
Length = 328
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q6GD38|DUS_STAAS Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MSSA476) GN=dus PE=3 SV=1
Length = 328
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q5HJT5|DUS_STAAC Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain COL) GN=dus PE=3 SV=2
Length = 328
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P E +
Sbjct: 72 MVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGK-GSGLILRPDVAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G + D + +++ +++LS IH R
Sbjct: 131 QATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G VM+GR +
Sbjct: 184 AHWELIEAIKN------LRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 17/240 (7%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
+ P +APM TD +R L + + +EM ++ + + + E P
Sbjct: 8 IAPKVILAPMAGVTDKPFRLLCKRLGA-GLAVSEMTISDPRFWGTRKSLHRMDHAGEPDP 66
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
I +QI G+ LA+A + I++N GCP+ KV + G +LM D + V +
Sbjct: 67 ISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVC-NAWAGSALMRDEELVARIL 125
Query: 127 SVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
+ + NVPV++K R G D DH + I +++ +H R + A
Sbjct: 126 TAVVQAVNVPVTLKIRTGWDCDHRNGPT----IARIAQDCGIAALAVHGRTRDQHYTGSA 181
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
E TI +K + NG I++ + LR+ GA VM+GRAA PW
Sbjct: 182 EYATIAQIKAAL---------QIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPW 232
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
LP +APM TD +R L R + + +EM+ ++ ++ L E P
Sbjct: 11 LPNRLILAPMAGVTDRPFRQLCRRLGA-GMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEP 69
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+QI G + LA+A + I++N GCP+ KV G +L+ D V E +
Sbjct: 70 RSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAA-GSALLRDEALVAEIL 128
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE 186
+ +VPV++K R G D D+ N + + K++ + + +H R AE
Sbjct: 129 DAVVRAVDVPVTLKIRTGW-DRDNRNGVT--VAKLAEQAGIQALAVHGRTRADLYTGEAE 185
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
TI +K + NG I++ ++ + + G +++GRAA PW
Sbjct: 186 YETIAAIKQAVSIPVF---------ANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPW 235
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 26/280 (9%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 71
+APM TD +R L + + +EM+A+ +I + + +L + + +Q+
Sbjct: 15 LAPMSGVTDLEFRRLVKRFG-AGLVVSEMVASRAMIVESRQSLKKSAIMRDDATSACVQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G + +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVG-GYSGSALMKDEQLAAKIFEATVE 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+PV+VK R+G DD+ + + K++ S + +H R A+ I
Sbjct: 133 AVKLPVTVKMRMGWDDN---TKNAPTLAKIAESSGVQMITVHGRTRCQFYSGNADWDFIR 189
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHV 250
+K + + NG I + AL+K GA +MVGR AY PW + +
Sbjct: 190 SVK---------ESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWL-ISQI 239
Query: 251 DTAI-----YGAPSSGLTRRQVVEKYQIYGDAILGTYGNN 285
D + APS V E Y+ AIL YG +
Sbjct: 240 DHYLKTGEEKSAPSIAEQLDIVTEHYE----AILDYYGES 275
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM TD +R L ++EM++ ++ LA S + +QI
Sbjct: 14 LAPMAGITDQPFRRLCAYYGA-GLTFSEMMSTNPQVWHTEKSKLRLAHSEDLGLNAVQIA 72
Query: 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN 132
GS+ +A+A + Y I++N GCP+ KV G +L+ P V + + + +
Sbjct: 73 GSDPLEMAQAAAINVEYGAQIIDINMGCPAKKV-NRKLAGSALLQFPDLVEKILREVVSA 131
Query: 133 TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI 190
NVPV++K R G D N+ C I K++ + +H +R L G AE I
Sbjct: 132 VNVPVTLKIRTG---WDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEG--EAEYDNI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH 249
+K ++ NG I++ + L GA +M+GRAA NPW
Sbjct: 187 KAVKQAIAIPVI---------ANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLFQAV 237
Query: 250 VD----TAIYGAPS----SGLTRRQVVEKYQIYGDAILGTYGNNRPHV 289
+ +I PS G R + E +Q YG+ Y R HV
Sbjct: 238 ENLIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQ--KGYRIARKHV 283
>sp|Q5HKD5|DUS_STAEQ Probable tRNA-dihydrouridine synthase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=dus PE=3 SV=1
Length = 326
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D TD +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESYCHPEGIHSVRGRLTFSDDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P+ E +
Sbjct: 72 MVAHIWGDKPEQFREMSIGLADMGFKGIDLNMGCPVANVAKKGK-GSGLILRPETAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G D D + +++ +++LS IH R
Sbjct: 131 QASKAG-GLPVSVKTRLGYYDIDEWRDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G +M+GR +
Sbjct: 184 AHWELIEAIK------TLRDEIAPNTLLTINGDIPDRQTGLELANKYGIDGIMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 16/234 (6%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 71
+APM D TD +R L + + +EM+A+ ++ + + ++ + + +Q+
Sbjct: 15 LAPMSDITDLEFRKLVKRFG-AGLVVSEMIASRAMVVKSRQSMQKCAIVHDDPTSACVQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G + +A+A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDEQLAAKIFEATVK 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+P++VK R+G DD+ + + K++ S + +H R A+ I
Sbjct: 133 AVKIPITVKMRMGWDDN---TKNAPDLAKIAESSGVQMVTVHGRTRCQFYSGNADWDFIR 189
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 244
+K + + NG I + AL+K GA +MVGR AY PW
Sbjct: 190 SVK---------EAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPW 234
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 19/235 (8%)
Query: 13 VAPMMDWTDNHYRTLARLISKHA--WLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQ 70
+APM TD +R R+ + + ++EM++ ++ LA E +Q
Sbjct: 14 LAPMAGITDQPFR---RICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEAGINAVQ 70
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
I G + D +AKA ++ Y + I++N GCP+ KV G +L+ P V + ++ +
Sbjct: 71 IAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKV-NRKMAGSALLQYPDLVKQILNKVV 129
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ VPV++K R G D N+ C I K++ + IH R AE I
Sbjct: 130 KSVTVPVTLKIRTGWDKD---NRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAEYDNI 186
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244
+K + ++ NG I + ++ L A +M+GR + NPW
Sbjct: 187 KAVKEQLSIPII---------ANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPW 232
>sp|Q8CU07|DUS_STAES Probable tRNA-dihydrouridine synthase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=dus PE=3 SV=1
Length = 326
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG--NLDRFLAFSPEQHP 66
P+F +APM D T+ +R + ++ +TE E+ + +G ++ L FS ++ P
Sbjct: 12 PFFILAPMEDVTNIVFRHVVSEAARPDVFFTEFTNTESYCHPEGIHSVRGRLTFSDDEQP 71
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
+V I G + + + + I+LN GCP VA G G L+L P+ E +
Sbjct: 72 MVAHIWGDKPEQFREMSIGLADMGFKGIDLNMGCPVANVAKKGK-GSGLILRPETAAEII 130
Query: 127 SVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK--VSSLSPTRHFIIHSRKALLNGISP 184
A +PVSVK R+G D D + +++ +++LS IH R
Sbjct: 131 QASKAG-GLPVSVKTRLGYYDIDEWRDWLKHVFEQDIANLS------IHLRTRKEMSKVD 183
Query: 185 AENRTIPPLKYEYYYALLRD--FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAAYQ 241
A I +K LRD P+ T+NG I + + A + G +M+GR +
Sbjct: 184 AHWELIEAIK------TLRDEIAPNTLLTINGDIPDRQTGLELANKYGIDGIMIGRGIFH 237
Query: 242 NPW 244
NP+
Sbjct: 238 NPF 240
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 127/323 (39%), Gaps = 31/323 (9%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG 72
+APM ++ +R + + EM++ + I+Y L + P+ LQI
Sbjct: 15 LAPMAGVCNSAFRLTVKEFG-AGLVCAEMVSDKAILYNNARTMGMLYIDEREKPLSLQIF 73
Query: 73 GSNLDNLAKATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G + L +A + + D I++N GCP PK+ G +LDP + E +S +
Sbjct: 74 GGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDA-GAKWLLDPDKIYEMVSAVVD 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-----RHFIIHSRKALLNGISPAE 186
N PV+VK R+G D+ D I+ V + + +H R + A
Sbjct: 133 AVNKPVTVKMRMGWDE--------DHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTAN 184
Query: 187 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQNPWY 245
I +K ++ NG + T + L G VM+GRAA NPW
Sbjct: 185 WDIIKEVKQSVSIPVIG---------NGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWM 235
Query: 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPG 305
V G R+ + +++ D ++ G N VR++ K + G
Sbjct: 236 IYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGEN-VAVREMRKHAAWYLKGVKG 294
Query: 306 NGLFKRKADAAFQTCKTVKSFLE 328
N + + C+T + F++
Sbjct: 295 NANVRNE----INHCETREEFVQ 313
>sp|Q50049|DUS_MYCLE Probable tRNA-dihydrouridine synthase OS=Mycobacterium leprae
(strain TN) GN=dus PE=3 SV=1
Length = 384
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 138/321 (42%), Gaps = 31/321 (9%)
Query: 40 EMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL-ANAYNYDEINLNC 98
EM+ A ++ + F+P++ P LQ+ + A ++ A+ D I++N
Sbjct: 54 EMVTARALVERNAVTIHMTTFAPDESPRSLQLYTVDPATTYTAAKMVADEGLADHIDMNF 113
Query: 99 GCPSPKVAGHGCFGVSLMLDPKFVGE--AMSVIAA-NTNVPVSVKCRIGVDD-HDSYNQL 154
GCP PKV G G +L + G+ A +V A T +PV+VK RIG+DD H ++
Sbjct: 114 GCPMPKVTRRGG-GAALPYKRRLFGQIVAAAVRATEGTKIPVTVKFRIGIDDEHHTHLD- 171
Query: 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214
+++ +H+R A A+ I LK + +R P L NG
Sbjct: 172 ---AGRIAEAEGAAAVALHARTAAQRYSGTADWAQIAQLKQQ-----VRTIPVLG---NG 220
Query: 215 GI-NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSG-LTRRQVVEKYQ 272
I + D + G V++GR PW + A G P+ T +V E +
Sbjct: 221 DIYDASDALAMMAVTGCDGVVIGRGCLGRPWL-FAELSAAFTGRPAPAPPTLGEVAEIVR 279
Query: 273 IYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE--ET 330
+G ++ +G ++ +RD+ K + + H P G R A A +T + L +
Sbjct: 280 RHGKLLVAHFGEDK-GMRDIRKHIAWYLHGFPA-GSELRNALALVKTLDELDCLLNRLDG 337
Query: 331 IVAIPDSVLDSPIEEAPRGRE 351
V PD+ + PRGR+
Sbjct: 338 AVPFPDAAI------GPRGRQ 352
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 18/236 (7%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVLQI 71
+APM TD +R LA + TEM+A+ ++ + R A H ++Q+
Sbjct: 9 LAPMSGVTDMPFRELAWRFGA-GLVVTEMVASRELVNDTAESWSRLKAAGFRPH--MVQL 65
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G +A+A ++A + D I++N GCP+ KV G G G +LM DP +
Sbjct: 66 AGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG-GYSGSALMRDPDHALGLIEATVK 124
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
++PV++K R+G D+ +S N I + + S + IH R + A+ I
Sbjct: 125 AVDIPVTLKMRLGWDE-NSIN--APDIARRAEASGIQLVTIHGRTRMQFYEGRADWDAIR 181
Query: 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYT 246
+R+ + NG + T + LR+ GA VM+GR PW+
Sbjct: 182 A---------VREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWHA 228
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 17/240 (7%)
Query: 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP 66
+ P +APM TD +R L + + +EM ++ + + + E P
Sbjct: 8 IAPKVILAPMAGVTDKPFRLLCKRLGA-GLAVSEMTISDPRFWGTRKSLHRMDHAGEPDP 66
Query: 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAM 126
I +QI G+ LA+A + I++N GCP+ KV + G +LM D V +
Sbjct: 67 ISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVC-NAWAGSALMRDEDLVARIL 125
Query: 127 SVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185
S + +VPV++K R G D DH + I +++ +H R + A
Sbjct: 126 SAVVRAVDVPVTLKIRTGWDCDHRNGPT----IARIAQDCGIAALAVHGRTRDQHYTGTA 181
Query: 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244
E TI +K ++ NG I++ + LR G VM+GRAA PW
Sbjct: 182 EYATIAQIKAALQIPVI---------ANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPW 232
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 32/242 (13%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QGNLDRFLAFSPEQHPIVLQI 71
+APM + TD +R L + + +EM+A+ +I + + ++ + + +Q+
Sbjct: 15 LAPMSNITDLEFRKLVKRFG-AGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQL 73
Query: 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA 131
G D +A A ++ I+LN GCP+ KV G G G +LM D + +
Sbjct: 74 AGCEPDVIADAAKMNEDMGAKIIDLNFGCPAKKVVG-GYAGSALMRDERLATKIFEATVK 132
Query: 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191
+PV+VK R+G DD+ + + +++ S + +H R
Sbjct: 133 AVKIPVTVKMRMGWDDN---TKNAPTLAVIAASSGVQMVTVHGRT--------------- 174
Query: 192 PLKYEYYYA--------LLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQN 242
+ ++Y ++++ + NG I + AL+K GA +MVGR Y
Sbjct: 175 --RCQFYSGNANWDFIRVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGK 232
Query: 243 PW 244
PW
Sbjct: 233 PW 234
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 27/325 (8%)
Query: 13 VAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLAFSPEQHPIVLQ 70
+APM TD +RTL + + + +EM++++ ++ ++ +L R PE P +Q
Sbjct: 17 LAPMAGVTDQPFRTLCQRLGA-GMVVSEMVSSDMSLWNSRKSSLRRIHEGDPE--PRSVQ 73
Query: 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130
I G + +A A + I++N GCP+ KV G +L+ D V E + +
Sbjct: 74 IAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAA-GSALLRDEALVSEILHAVV 132
Query: 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190
+ +VPV++K R G D N+ + K++ + + +H R AE TI
Sbjct: 133 SAVDVPVTLKIRTG---WDRANKNGLNVAKIAEQAGIQALAVHGRTRADLYTGEAEYDTI 189
Query: 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY--TL 247
+K + NG I + ++ A L G +++GRAA PW +
Sbjct: 190 GAIKQAVSIPVF---------ANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREI 240
Query: 248 GHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG 307
H P+ L VE+ + A L + + VR K + + + PG
Sbjct: 241 EHYLRTGEHLPAPQLDE---VERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGK 297
Query: 308 LFKRKADAAFQT---CKTVKSFLEE 329
F+ + +A T C V++F E
Sbjct: 298 EFRARFNALEDTQAQCANVRAFFSE 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,639,684
Number of Sequences: 539616
Number of extensions: 6195393
Number of successful extensions: 15686
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 15138
Number of HSP's gapped (non-prelim): 504
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)