Query 017178
Match_columns 376
No_of_seqs 245 out of 829
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 10:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 51.7 6.7 0.00049 33.4 4.6 72 198-274 281-354 (370)
2 d2bisa1 c.87.1.8 (A:1-437) Gly 46.7 12 0.00084 33.0 5.5 88 199-295 341-429 (437)
3 d2bfwa1 c.87.1.8 (A:218-413) G 40.0 24 0.0017 27.9 6.0 71 198-273 123-194 (196)
4 d1veha_ d.52.8.1 (A:) HIRA-int 18.0 65 0.0047 23.1 4.2 47 13-63 40-89 (92)
5 d2f9fa1 c.87.1.8 (A:2-167) Fir 17.8 36 0.0026 25.9 3.0 65 198-269 98-165 (166)
6 d2dt7b1 a.217.1.1 (B:134-217) 15.4 54 0.0039 23.0 3.1 35 259-293 37-84 (84)
7 d1kija1 d.14.1.3 (A:221-392) D 14.2 55 0.004 26.1 3.2 25 251-275 139-163 (172)
8 d1s16a1 d.14.1.3 (A:1217-1383) 13.7 75 0.0055 25.2 3.9 25 251-275 140-164 (167)
9 d2nxoa1 c.94.1.1 (A:5-281) Hyp 13.5 36 0.0026 28.3 2.0 22 245-266 204-225 (277)
10 d1ei1a1 d.14.1.3 (A:221-392) D 13.2 61 0.0044 25.8 3.2 25 251-275 139-163 (172)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=51.68 E-value=6.7 Score=33.37 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=48.9
Q ss_pred ccccchHHHHhcCCeeeeeccc-chhhhhcCCCCCce-EEeccCCCCcCcHHHHHHhhhhcHHHHHHHHHHHHHHHHHH
Q 017178 198 AWSVSEKYILACDSMTLIVRPR-YYDFFSRGMVPMQH-YWPIRDNSKCTSLKFAVDWGNAHTEKAEAIGEAASRFIRED 274 (376)
Q Consensus 198 ~~S~rlk~lL~~~SvvL~~~~~-~~e~f~~~L~P~~H-YvPv~~d~~~~dl~~~v~w~~~h~~~A~~Ia~~g~~f~~~~ 274 (376)
+++..+--.|+||-+||..+.. ..|. +..+.+ ++-+...+ .++|.++|..+.++++..++++++|++++.++
T Consensus 281 ~~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 281 AAGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred cccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 3455566778999988876532 2232 223333 23223221 37899999999999999999999999999654
No 2
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=46.68 E-value=12 Score=33.04 Aligned_cols=88 Identities=5% Similarity=-0.035 Sum_probs=55.3
Q ss_pred cccchHHHHhcCCeeeeecccchhhhhcCCCCCceEEeccCCCCcCcHHHHHHhhh-hcHHHHHHHHHHHHHHHHHHcch
Q 017178 199 WSVSEKYILACDSMTLIVRPRYYDFFSRGMVPMQHYWPIRDNSKCTSLKFAVDWGN-AHTEKAEAIGEAASRFIREDLKM 277 (376)
Q Consensus 199 ~S~rlk~lL~~~SvvL~~~~~~~e~f~~~L~P~~HYvPv~~d~~~~dl~~~v~w~~-~h~~~A~~Ia~~g~~f~~~~L~~ 277 (376)
++..+.--|+||-.||..+..-. .+.+.....++ +...+ .++|.++|..+. .+++..++++++|++.++ .++.
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~~---~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-~~s~ 414 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGGL---RDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAM-SFSW 414 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTTH---HHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHH-HSCH
T ss_pred cchHHHHHHHCCCCEEEeCCCCc---HHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCH
Confidence 34445566899999997654321 11122223343 22221 368889997754 577899999999999885 4787
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 017178 278 GYVYDYMFHLLNEYARLL 295 (376)
Q Consensus 278 ~~~~~Y~~~LL~eYa~l~ 295 (376)
+.+. .+++.-|.+++
T Consensus 415 ~~~a---~~~~~iY~~~i 429 (437)
T d2bisa1 415 EKSA---ERYVKAYTGSI 429 (437)
T ss_dssp HHHH---HHHHHHHHTCS
T ss_pred HHHH---HHHHHHHHHHH
Confidence 7654 34555566665
No 3
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=40.03 E-value=24 Score=27.87 Aligned_cols=71 Identities=4% Similarity=-0.040 Sum_probs=47.8
Q ss_pred ccccchHHHHhcCCeeeeecccchhhhhcCCCCCceEEeccCCCCcCcHHHHHHhhhh-cHHHHHHHHHHHHHHHHH
Q 017178 198 AWSVSEKYILACDSMTLIVRPRYYDFFSRGMVPMQHYWPIRDNSKCTSLKFAVDWGNA-HTEKAEAIGEAASRFIRE 273 (376)
Q Consensus 198 ~~S~rlk~lL~~~SvvL~~~~~~~e~f~~~L~P~~HYvPv~~d~~~~dl~~~v~w~~~-h~~~A~~Ia~~g~~f~~~ 273 (376)
+++..+.-.|+||-+||...... ..+.+.....|+ +..++ ..++.++|..+.+ +++..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~---~~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHH---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCc---cceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 46677888899999999876432 222222223343 44332 3688888876544 688999999999998865
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.96 E-value=65 Score=23.06 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred EEEECCEEEEEeccccc--cchhhhH-HHHHHHHHHhCCCCCCCeEEEEeCCCc
Q 017178 13 LVIVNGKAYVEKYKQSI--QTRDKFT-LWGILQLLRLYPGRLPDLELMFDCNDR 63 (376)
Q Consensus 13 ~~I~~GrlYv~~~~~~~--~~R~~~~-~~~ilqll~~~p~~lPDvef~~~~~D~ 63 (376)
+-|.+|.|||.-.+.|- .+-. .| ..+|.+.|+. .+|++.=+.+..|.
T Consensus 40 v~v~~g~V~v~l~GaC~gCp~s~-~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 40 RGFEDGIVRLKLQGSCTSCPSSI-ITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEETTEEEECCCCCCCCCHHHH-HHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEeeCCeEEEEEccCCCCChhHH-HHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 45789999997765542 2222 34 3678888887 57999888888774
No 5
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.83 E-value=36 Score=25.95 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=40.6
Q ss_pred ccccchHHHHhcCCeeeeecccc-hhhhhcCCCCCce-EEeccCCCCcCcHHHHHHhhhhcHHH-HHHHHHHHHH
Q 017178 198 AWSVSEKYILACDSMTLIVRPRY-YDFFSRGMVPMQH-YWPIRDNSKCTSLKFAVDWGNAHTEK-AEAIGEAASR 269 (376)
Q Consensus 198 ~~S~rlk~lL~~~SvvL~~~~~~-~e~f~~~L~P~~H-YvPv~~d~~~~dl~~~v~w~~~h~~~-A~~Ia~~g~~ 269 (376)
+++..+--.|+||-+||..+... .|+ +..... |+ +..| .+++.+++..+.+|+++ .+.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~~~e~----i~~~~~g~~-~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGGFKET----VINEKTGYL-VNAD--VNEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHHHHHH----CCBTTTEEE-ECSC--HHHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCcceee----ecCCccccc-CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 44555677889999999877542 333 333333 32 2334 37899999999888754 3445555554
No 6
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.45 E-value=54 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.502 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHH------------HHcch-hhHHHHHHHHHHHHHH
Q 017178 259 KAEAIGEAASRFIR------------EDLKM-GYVYDYMFHLLNEYAR 293 (376)
Q Consensus 259 ~A~~Ia~~g~~f~~------------~~L~~-~~~~~Y~~~LL~eYa~ 293 (376)
.|+=+|++|..|-. .+|.+ +...-|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 35666666666543 34543 3558899999999964
No 7
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=14.24 E-value=55 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=20.9
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHHHc
Q 017178 251 DWGNAHTEKAEAIGEAASRFIREDL 275 (376)
Q Consensus 251 ~w~~~h~~~A~~Ia~~g~~f~~~~L 275 (376)
.|+++||+.|+.|.+.+..-++..+
T Consensus 139 ~~L~~np~~a~~I~~k~~~~~~aR~ 163 (172)
T d1kija1 139 EILEENPRIAKAVYEKALRAAQARE 163 (172)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998887665544
No 8
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=13.65 E-value=75 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.9
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHHHc
Q 017178 251 DWGNAHTEKAEAIGEAASRFIREDL 275 (376)
Q Consensus 251 ~w~~~h~~~A~~Ia~~g~~f~~~~L 275 (376)
.|+++||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998887665443
No 9
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.55 E-value=36 Score=28.32 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=17.2
Q ss_pred cHHHHHHhhhhcHHHHHHHHHH
Q 017178 245 SLKFAVDWGNAHTEKAEAIGEA 266 (376)
Q Consensus 245 dl~~~v~w~~~h~~~A~~Ia~~ 266 (376)
-+.++++|+++||++|.+|+.+
T Consensus 204 a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 204 AFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCHHHHHHHHHH
Confidence 4556788999999999888654
No 10
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=13.22 E-value=61 Score=25.84 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=20.0
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHHHc
Q 017178 251 DWGNAHTEKAEAIGEAASRFIREDL 275 (376)
Q Consensus 251 ~w~~~h~~~A~~Ia~~g~~f~~~~L 275 (376)
.|+++||+.|+.|.+.+..-++..+
T Consensus 139 ~~l~~np~~a~~I~~k~~~~~~aR~ 163 (172)
T d1ei1a1 139 EYLLENPTDAKIVVGKIIDAARARE 163 (172)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999998876554443
Done!