BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017179
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 182 VDRDDLADQGSGHFAQTVRKLKELKPNM------LIEALVPDFRGNNGCVREVAKSGLNV 235
VD +DL S Q + LK ++ N+ L L D + N E L +
Sbjct: 99 VDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAED-KENYKKFYEAFSKNLKL 157
Query: 236 FAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVS 294
H T L +R H + QS D + +YV T+ SI GE+ +QV +
Sbjct: 158 GIHEDSTNRRRLSELLRYHTS---QSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214
Query: 295 T--MEKVRAAGVDVMTFGQYMRPSKRHMPVSEY 325
+ +E+VR G +V+ YM P+ EY
Sbjct: 215 SAFVERVRKRGFEVV----YMTE-----PIDEY 238
>pdb|1NRZ|A Chain A, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|B Chain B, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|C Chain C, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
pdb|1NRZ|D Chain D, Crystal Structure Of The Iibsor Domain Of The Sorbose
Permease From Klebsiella Pneumoniae Solved To 1.75a
Resolution
Length = 164
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 303 GVDVMTF---GQYMRPSKRHMPVSEYITPEAFERYR---ALGMEMGFRYVASGPMVRSSY 356
GV + T G RP K+ + + + P+ + +R LG+++ R VAS P V
Sbjct: 96 GVQIATLNIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKLGVKLDLRVVASDPSVNILD 155
Query: 357 KAGE 360
K E
Sbjct: 156 KINE 159
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 226 REVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285
+ +A +GL+ + HN++T E + R +++ LD L +D AG + ++G
Sbjct: 163 QRLANAGLDYYNHNLDTSPEFYGNIITTR-TYQERLDTLEKVRD---AGIKVCSGGIVGL 218
Query: 286 GET 288
GET
Sbjct: 219 GET 221
>pdb|1MOX|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
Length = 501
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 113 CPNLGECWSGGETGTATATIMILGDTCTRGCR 144
CPN G CW GE T +I C+ CR
Sbjct: 170 CPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 167 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 200
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 110 EAKCPNLGECWSGGETGTATATIMILGDTCTRGCR 144
+ CPN G CW GE T +I C+ CR
Sbjct: 191 DPSCPN-GSCWGAGEENCQKLTKIICAQQCSGRCR 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,693,985
Number of Sequences: 62578
Number of extensions: 365503
Number of successful extensions: 1157
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 15
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)