Query 017179
Match_columns 376
No_of_seqs 385 out of 2415
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2672 Lipoate synthase [Coen 100.0 8E-108 2E-112 766.2 23.4 333 42-376 19-357 (360)
2 COG0320 LipA Lipoate synthase 100.0 1.1E-94 2.4E-99 678.8 25.9 287 73-367 19-305 (306)
3 PTZ00413 lipoate synthase; Pro 100.0 7.7E-91 1.7E-95 684.8 33.5 337 38-374 48-394 (398)
4 PLN02428 lipoic acid synthase 100.0 1.7E-87 3.8E-92 662.3 34.5 333 38-374 14-346 (349)
5 TIGR00510 lipA lipoate synthas 100.0 3.8E-83 8.3E-88 623.4 32.0 294 70-370 9-302 (302)
6 PRK12928 lipoyl synthase; Prov 100.0 6.3E-75 1.4E-79 563.6 30.3 280 73-360 9-289 (290)
7 PRK05481 lipoyl synthase; Prov 100.0 9.4E-64 2E-68 485.6 31.8 281 75-363 4-284 (289)
8 PRK08444 hypothetical protein; 100.0 6.4E-31 1.4E-35 261.9 19.8 239 90-343 13-273 (353)
9 COG0621 MiaB 2-methylthioadeni 100.0 1E-29 2.2E-34 257.8 22.6 213 129-345 144-372 (437)
10 PRK05927 hypothetical protein; 100.0 5.5E-30 1.2E-34 255.0 18.7 246 86-343 3-271 (350)
11 TIGR03700 mena_SCO4494 putativ 100.0 1.8E-29 3.9E-34 251.5 19.4 237 90-342 11-273 (351)
12 PRK05926 hypothetical protein; 100.0 2.4E-28 5.3E-33 244.8 20.7 240 90-345 28-297 (370)
13 PRK08445 hypothetical protein; 100.0 6.2E-28 1.3E-32 240.3 20.9 237 92-342 6-269 (348)
14 PRK15108 biotin synthase; Prov 100.0 2.7E-27 5.9E-32 235.4 24.2 234 92-341 9-251 (345)
15 PRK08508 biotin synthase; Prov 100.0 2.5E-27 5.3E-32 229.4 22.8 197 136-343 14-216 (279)
16 PLN02389 biotin synthase 100.0 9.9E-27 2.1E-31 233.8 22.7 234 91-341 48-293 (379)
17 COG0502 BioB Biotin synthase a 100.0 5.9E-27 1.3E-31 229.7 20.1 212 129-355 50-269 (335)
18 PRK07360 FO synthase subunit 2 99.9 1.5E-26 3.2E-31 232.3 21.0 235 91-341 21-287 (371)
19 COG1060 ThiH Thiamine biosynth 99.9 1.6E-26 3.5E-31 231.1 20.9 241 91-345 22-287 (370)
20 PRK09234 fbiC FO synthase; Rev 99.9 1.5E-26 3.3E-31 251.5 22.4 240 90-344 487-755 (843)
21 TIGR03551 F420_cofH 7,8-dideme 99.9 4.7E-26 1E-30 226.3 22.0 233 92-341 3-265 (343)
22 TIGR03699 mena_SCO4550 menaqui 99.9 1.9E-26 4E-31 228.5 18.6 235 92-342 5-264 (340)
23 TIGR00423 radical SAM domain p 99.9 6.3E-26 1.4E-30 222.3 21.8 202 130-341 6-230 (309)
24 PRK06256 biotin synthase; Vali 99.9 1.7E-25 3.6E-30 221.2 23.2 236 90-340 20-264 (336)
25 PRK09240 thiH thiamine biosynt 99.9 8E-26 1.7E-30 227.0 20.9 230 91-339 37-284 (371)
26 PRK07094 biotin synthase; Prov 99.9 4.5E-25 9.6E-30 216.9 23.7 231 93-339 4-242 (323)
27 TIGR03550 F420_cofG 7,8-dideme 99.9 1.5E-25 3.3E-30 220.9 20.1 206 129-343 4-234 (322)
28 PRK09234 fbiC FO synthase; Rev 99.9 9.4E-25 2E-29 237.6 21.9 241 92-344 29-304 (843)
29 TIGR02351 thiH thiazole biosyn 99.9 3.8E-24 8.3E-29 214.5 20.5 210 91-317 36-263 (366)
30 PRK14332 (dimethylallyl)adenos 99.9 1.2E-23 2.5E-28 216.2 22.4 213 129-345 154-379 (449)
31 PRK14340 (dimethylallyl)adenos 99.9 2.2E-23 4.7E-28 213.9 22.7 214 129-345 149-376 (445)
32 PRK14327 (dimethylallyl)adenos 99.9 4E-23 8.7E-28 214.7 24.5 215 128-345 211-439 (509)
33 PRK14339 (dimethylallyl)adenos 99.9 5.6E-23 1.2E-27 209.5 23.0 213 129-345 127-357 (420)
34 PRK09613 thiH thiamine biosynt 99.9 1.3E-22 2.7E-27 208.7 23.5 230 89-333 45-299 (469)
35 PRK14336 (dimethylallyl)adenos 99.9 1.4E-22 3E-27 206.5 23.4 214 129-345 124-352 (418)
36 PRK14329 (dimethylallyl)adenos 99.9 1.3E-22 2.8E-27 209.4 22.2 214 129-345 168-401 (467)
37 PRK14335 (dimethylallyl)adenos 99.9 1.5E-22 3.2E-27 208.3 22.2 215 128-345 151-385 (455)
38 PRK06245 cofG FO synthase subu 99.9 1.9E-22 4.1E-27 199.6 21.9 205 129-342 7-237 (336)
39 PRK14337 (dimethylallyl)adenos 99.9 2.4E-22 5.2E-27 206.3 21.8 214 128-345 147-376 (446)
40 TIGR01579 MiaB-like-C MiaB-lik 99.9 2.6E-22 5.6E-27 204.0 21.3 214 129-345 138-365 (414)
41 TIGR00433 bioB biotin syntheta 99.9 4.4E-22 9.6E-27 192.8 21.9 198 133-341 32-236 (296)
42 PRK14326 (dimethylallyl)adenos 99.9 5E-22 1.1E-26 206.7 22.9 212 129-345 157-384 (502)
43 PRK14331 (dimethylallyl)adenos 99.9 4.9E-22 1.1E-26 203.5 22.3 215 129-346 146-373 (437)
44 TIGR01574 miaB-methiolase tRNA 99.9 7.7E-22 1.7E-26 202.1 23.7 214 129-345 145-374 (438)
45 PRK14328 (dimethylallyl)adenos 99.9 6.2E-22 1.4E-26 202.8 21.1 214 129-345 147-374 (439)
46 PRK14862 rimO ribosomal protei 99.9 1.4E-21 3.1E-26 200.3 23.5 211 129-345 139-373 (440)
47 PRK14330 (dimethylallyl)adenos 99.9 1.5E-21 3.3E-26 199.7 23.6 212 129-345 140-368 (434)
48 PRK14338 (dimethylallyl)adenos 99.9 2.4E-21 5.1E-26 199.6 24.7 212 129-344 155-385 (459)
49 TIGR01125 MiaB-like tRNA modif 99.9 2.2E-21 4.8E-26 198.2 23.9 214 129-345 135-362 (430)
50 PRK14333 (dimethylallyl)adenos 99.9 9.6E-22 2.1E-26 202.0 20.5 214 129-345 148-382 (448)
51 TIGR00089 RNA modification enz 99.9 9.6E-22 2.1E-26 200.7 20.1 213 129-346 139-367 (429)
52 PRK14325 (dimethylallyl)adenos 99.9 2.5E-21 5.4E-26 198.6 23.3 212 129-345 147-376 (444)
53 TIGR01578 MiaB-like-B MiaB-lik 99.9 2.8E-21 6E-26 197.1 22.7 214 129-345 133-359 (420)
54 PRK14334 (dimethylallyl)adenos 99.9 5.1E-21 1.1E-25 196.2 22.4 214 129-345 138-364 (440)
55 PRK06267 hypothetical protein; 99.9 1.7E-20 3.6E-25 187.2 18.5 219 102-341 4-231 (350)
56 KOG2900 Biotin synthase [Coenz 99.8 4.6E-19 9.9E-24 166.1 11.1 214 129-355 83-307 (380)
57 smart00729 Elp3 Elongator prot 99.8 2.2E-17 4.7E-22 148.5 18.0 176 131-313 3-190 (216)
58 KOG2492 CDK5 activator-binding 99.8 1.1E-17 2.4E-22 165.3 15.2 207 127-337 218-463 (552)
59 TIGR02026 BchE magnesium-proto 99.7 2.4E-15 5.2E-20 156.6 25.2 177 130-315 194-377 (497)
60 PRK01254 hypothetical protein; 99.7 9.3E-16 2E-20 161.3 20.0 185 129-316 372-598 (707)
61 TIGR03471 HpnJ hopanoid biosyn 99.7 1.2E-15 2.6E-20 157.6 20.4 171 132-315 199-377 (472)
62 cd01335 Radical_SAM Radical SA 99.7 2E-15 4.3E-20 133.7 18.4 180 134-323 2-187 (204)
63 PF04055 Radical_SAM: Radical 99.7 1.3E-15 2.8E-20 131.6 13.4 157 134-299 2-166 (166)
64 PRK00955 hypothetical protein; 99.7 3.2E-15 7E-20 157.6 18.2 184 129-315 292-520 (620)
65 PRK08207 coproporphyrinogen II 99.7 6E-15 1.3E-19 153.2 19.7 206 129-345 164-399 (488)
66 PRK08599 coproporphyrinogen II 99.6 4.7E-15 1E-19 149.1 17.6 213 130-354 3-241 (377)
67 PRK13361 molybdenum cofactor b 99.6 1.7E-14 3.7E-19 142.7 21.3 186 133-331 18-211 (329)
68 PRK05904 coproporphyrinogen II 99.6 2.8E-14 6E-19 142.8 19.4 205 137-353 14-238 (353)
69 TIGR02666 moaA molybdenum cofa 99.6 5.9E-14 1.3E-18 138.8 21.5 169 134-313 15-191 (334)
70 TIGR01212 radical SAM protein, 99.6 3.4E-14 7.4E-19 139.3 19.5 174 140-324 37-225 (302)
71 PRK00164 moaA molybdenum cofac 99.6 4.9E-14 1.1E-18 139.1 20.3 170 133-313 21-196 (331)
72 PRK05660 HemN family oxidoredu 99.6 4.8E-14 1E-18 142.2 20.4 206 137-354 14-244 (378)
73 PRK05799 coproporphyrinogen II 99.6 4.2E-14 9.1E-19 142.0 18.7 208 137-354 11-240 (374)
74 PRK05628 coproporphyrinogen II 99.6 4.7E-14 1E-18 141.8 18.4 206 138-353 11-248 (375)
75 PLN02951 Molybderin biosynthes 99.6 1.6E-13 3.5E-18 138.2 21.7 171 133-315 62-239 (373)
76 PRK08446 coproporphyrinogen II 99.6 6.7E-14 1.5E-18 139.7 18.4 206 137-353 8-231 (350)
77 TIGR00538 hemN oxygen-independ 99.6 1.3E-13 2.8E-18 142.1 20.2 174 130-313 51-241 (455)
78 PRK09249 coproporphyrinogen II 99.6 1.7E-13 3.7E-18 141.2 20.2 175 129-313 50-241 (453)
79 TIGR00539 hemN_rel putative ox 99.6 1.6E-13 3.5E-18 137.4 19.4 168 137-313 8-190 (360)
80 PRK08208 coproporphyrinogen II 99.6 1.9E-13 4.1E-18 140.1 19.9 213 129-353 40-275 (430)
81 TIGR02668 moaA_archaeal probab 99.6 2.1E-13 4.5E-18 132.9 18.6 169 132-313 13-186 (302)
82 PRK13347 coproporphyrinogen II 99.6 3.3E-13 7.2E-18 139.1 21.0 175 129-313 51-242 (453)
83 PRK09058 coproporphyrinogen II 99.6 1.5E-13 3.3E-18 141.5 18.3 175 129-313 62-253 (449)
84 PRK07379 coproporphyrinogen II 99.5 3.8E-13 8.2E-18 136.7 19.6 168 137-313 18-205 (400)
85 PRK08898 coproporphyrinogen II 99.5 9.1E-13 2E-17 133.6 20.9 168 137-313 27-211 (394)
86 PRK09057 coproporphyrinogen II 99.5 7.5E-13 1.6E-17 133.6 19.6 173 131-313 7-193 (380)
87 COG2896 MoaA Molybdenum cofact 99.5 8.8E-13 1.9E-17 129.5 18.7 174 129-314 9-190 (322)
88 PRK05301 pyrroloquinoline quin 99.5 7.8E-12 1.7E-16 125.7 24.6 171 129-310 16-189 (378)
89 TIGR01210 conserved hypothetic 99.5 3.1E-12 6.7E-17 126.1 21.0 198 128-338 14-243 (313)
90 PRK06294 coproporphyrinogen II 99.5 5.4E-13 1.2E-17 134.2 15.5 174 130-313 8-193 (370)
91 KOG4355 Predicted Fe-S oxidore 99.5 5.5E-13 1.2E-17 131.5 13.9 190 130-324 188-390 (547)
92 PRK06582 coproporphyrinogen II 99.5 2.7E-12 5.9E-17 130.1 17.9 174 129-313 12-200 (390)
93 COG1032 Fe-S oxidoreductase [E 99.4 2.1E-12 4.6E-17 131.7 15.7 190 129-324 198-403 (490)
94 TIGR01290 nifB nitrogenase cof 99.4 3.2E-11 6.9E-16 124.1 24.0 215 117-339 12-256 (442)
95 PRK08629 coproporphyrinogen II 99.4 2E-11 4.3E-16 125.4 21.3 178 129-315 53-240 (433)
96 TIGR02109 PQQ_syn_pqqE coenzym 99.4 4.5E-11 9.8E-16 119.2 22.7 170 130-310 8-180 (358)
97 TIGR02495 NrdG2 anaerobic ribo 99.3 3.8E-10 8.3E-15 102.6 19.3 163 129-303 16-183 (191)
98 COG2516 Biotin synthase-relate 99.3 1.1E-10 2.4E-15 113.4 15.4 202 129-341 29-249 (339)
99 TIGR03470 HpnH hopanoid biosyn 99.3 9.5E-10 2.1E-14 108.7 22.2 169 131-313 30-201 (318)
100 COG0635 HemN Coproporphyrinoge 99.3 3E-10 6.6E-15 116.1 19.0 177 129-315 35-230 (416)
101 COG1856 Uncharacterized homolo 99.3 3.8E-10 8.1E-15 104.9 17.3 203 128-341 10-217 (275)
102 TIGR02493 PFLA pyruvate format 99.3 9.2E-10 2E-14 103.3 20.4 197 131-340 17-234 (235)
103 TIGR01211 ELP3 histone acetylt 99.2 6.6E-10 1.4E-14 116.4 21.2 176 128-312 67-297 (522)
104 COG1242 Predicted Fe-S oxidore 99.2 4.9E-10 1.1E-14 107.2 17.1 194 90-310 6-218 (312)
105 PRK11145 pflA pyruvate formate 99.2 1.4E-09 2.9E-14 103.1 19.6 205 132-346 23-245 (246)
106 TIGR03822 AblA_like_2 lysine-2 99.2 2.2E-09 4.7E-14 106.3 20.5 207 103-334 67-286 (321)
107 PRK14456 ribosomal RNA large s 99.1 9.8E-09 2.1E-13 103.4 22.6 201 135-346 127-346 (368)
108 PRK14469 ribosomal RNA large s 99.1 6.4E-09 1.4E-13 103.9 20.2 201 133-345 105-317 (343)
109 TIGR03278 methan_mark_10 putat 99.1 8E-09 1.7E-13 105.2 20.9 210 136-360 29-259 (404)
110 COG0535 Predicted Fe-S oxidore 99.1 1.9E-08 4E-13 98.5 21.9 190 133-334 23-217 (347)
111 PRK14463 ribosomal RNA large s 99.1 2.7E-08 5.8E-13 99.7 22.9 203 132-345 106-317 (349)
112 PRK14455 ribosomal RNA large s 99.1 3.1E-08 6.7E-13 99.5 22.7 199 135-345 115-329 (356)
113 PRK14468 ribosomal RNA large s 99.0 5.8E-08 1.3E-12 97.1 21.9 203 132-345 96-313 (343)
114 TIGR03821 AblA_like_1 lysine-2 99.0 2.1E-08 4.6E-13 99.3 18.2 185 131-335 98-293 (321)
115 PRK13762 tRNA-modifying enzyme 99.0 2.7E-08 5.9E-13 98.6 18.9 205 137-353 66-303 (322)
116 PRK14460 ribosomal RNA large s 99.0 7.9E-08 1.7E-12 96.5 22.1 200 135-345 108-324 (354)
117 PRK14466 ribosomal RNA large s 99.0 1E-07 2.2E-12 95.2 22.3 204 131-345 105-317 (345)
118 PRK14457 ribosomal RNA large s 99.0 1.1E-07 2.5E-12 95.0 22.6 204 129-345 101-322 (345)
119 TIGR00238 KamA family protein. 99.0 2.7E-08 5.8E-13 99.0 17.4 170 129-315 113-292 (331)
120 PRK14470 ribosomal RNA large s 98.9 1.2E-07 2.7E-12 94.5 21.3 191 135-338 103-305 (336)
121 PRK13758 anaerobic sulfatase-m 98.9 2.2E-07 4.8E-12 93.1 21.8 193 132-332 8-215 (370)
122 COG2100 Predicted Fe-S oxidore 98.9 6.5E-08 1.4E-12 94.5 17.1 200 136-344 114-331 (414)
123 PRK14459 ribosomal RNA large s 98.9 4.3E-07 9.4E-12 91.6 23.0 201 135-345 127-351 (373)
124 TIGR00048 radical SAM enzyme, 98.8 7.5E-07 1.6E-11 89.5 22.5 200 135-345 111-325 (355)
125 PRK14453 chloramphenicol/florf 98.8 1.5E-06 3.2E-11 87.1 21.4 201 135-345 106-322 (347)
126 TIGR03820 lys_2_3_AblA lysine- 98.7 8.6E-07 1.9E-11 90.5 19.1 180 104-305 88-278 (417)
127 COG1180 PflA Pyruvate-formate 98.7 3E-06 6.5E-11 81.7 20.8 206 129-349 35-248 (260)
128 COG2108 Uncharacterized conser 98.7 3.1E-07 6.8E-12 89.8 13.7 164 132-312 31-201 (353)
129 PRK14467 ribosomal RNA large s 98.7 4.4E-06 9.5E-11 83.8 22.3 202 132-345 102-321 (348)
130 COG1243 ELP3 Histone acetyltra 98.7 1.7E-06 3.6E-11 88.2 18.9 178 128-310 66-287 (515)
131 COG4277 Predicted DNA-binding 98.7 4E-07 8.7E-12 88.2 13.6 170 134-313 59-256 (404)
132 PRK13745 anaerobic sulfatase-m 98.7 1.7E-06 3.7E-11 88.4 19.2 170 135-313 20-204 (412)
133 COG0731 Fe-S oxidoreductases [ 98.6 2E-06 4.4E-11 84.0 17.8 212 137-358 32-261 (296)
134 PRK14464 ribosomal RNA large s 98.6 4.7E-06 1E-10 83.4 18.6 200 135-345 102-309 (344)
135 COG1031 Uncharacterized Fe-S o 98.5 2.3E-06 5E-11 87.0 15.9 189 133-324 187-413 (560)
136 TIGR02494 PFLE_PFLC glycyl-rad 98.5 4.7E-06 1E-10 81.0 17.6 146 157-313 106-257 (295)
137 PRK14462 ribosomal RNA large s 98.5 1.4E-05 3E-10 80.4 20.7 200 135-345 116-330 (356)
138 PRK11194 ribosomal RNA large s 98.5 5.2E-05 1.1E-09 76.8 23.4 200 135-345 109-329 (372)
139 KOG2876 Molybdenum cofactor bi 98.4 2.6E-07 5.6E-12 88.1 5.4 172 129-313 9-190 (323)
140 PRK14454 ribosomal RNA large s 98.4 4.8E-05 1E-09 76.2 21.3 203 131-345 103-318 (342)
141 PRK14465 ribosomal RNA large s 98.3 0.00011 2.3E-09 73.7 21.8 198 135-344 111-320 (342)
142 PRK10076 pyruvate formate lyas 98.3 9.8E-05 2.1E-09 69.3 18.6 180 156-347 18-211 (213)
143 PRK14461 ribosomal RNA large s 98.3 0.00015 3.4E-09 73.0 20.9 198 136-345 114-344 (371)
144 COG1244 Predicted Fe-S oxidore 98.2 3.2E-05 6.8E-10 76.0 15.0 173 128-310 46-243 (358)
145 cd03174 DRE_TIM_metallolyase D 98.2 7.2E-05 1.6E-09 71.1 16.7 148 156-310 15-166 (265)
146 COG1313 PflX Uncharacterized F 98.2 3.4E-05 7.3E-10 74.8 13.9 199 137-346 126-332 (335)
147 COG1533 SplB DNA repair photol 98.2 0.00011 2.4E-09 72.2 17.2 170 135-310 35-219 (297)
148 COG0641 AslB Arylsulfatase reg 98.0 0.0005 1.1E-08 69.8 19.4 188 136-334 14-215 (378)
149 COG1625 Fe-S oxidoreductase, r 98.0 0.00015 3.3E-09 73.4 14.7 192 138-341 36-244 (414)
150 COG1509 KamA Lysine 2,3-aminom 98.0 0.00027 5.8E-09 70.5 15.5 180 103-305 90-282 (369)
151 TIGR03365 Bsubt_queE 7-cyano-7 97.9 0.00013 2.9E-09 69.3 12.5 132 129-284 23-160 (238)
152 PF13353 Fer4_12: 4Fe-4S singl 97.9 4.5E-05 9.6E-10 65.4 7.2 70 136-207 12-84 (139)
153 PF13394 Fer4_14: 4Fe-4S singl 97.7 4.5E-05 9.8E-10 63.9 4.8 80 135-216 4-88 (119)
154 TIGR02826 RNR_activ_nrdG3 anae 97.7 0.00034 7.4E-09 62.0 9.7 96 129-236 15-113 (147)
155 PRK05692 hydroxymethylglutaryl 97.6 0.003 6.4E-08 61.9 16.3 142 156-310 22-175 (287)
156 TIGR03279 cyano_FeS_chp putati 97.4 0.0023 5E-08 65.8 13.2 78 221-302 127-206 (433)
157 TIGR02491 NrdG anaerobic ribon 97.4 0.0018 3.9E-08 57.5 10.7 69 137-207 23-95 (154)
158 cd07938 DRE_TIM_HMGL 3-hydroxy 97.4 0.0054 1.2E-07 59.6 14.9 145 156-310 16-169 (274)
159 COG5014 Predicted Fe-S oxidore 97.3 0.001 2.2E-08 60.4 8.5 154 137-303 49-213 (228)
160 COG0820 Predicted Fe-S-cluster 97.3 0.011 2.4E-07 59.2 16.6 196 136-344 108-321 (349)
161 PLN02746 hydroxymethylglutaryl 97.3 0.0098 2.1E-07 59.8 16.4 142 156-310 64-217 (347)
162 PRK11121 nrdG anaerobic ribonu 97.2 0.0021 4.6E-08 57.2 9.1 79 137-217 24-107 (154)
163 cd07940 DRE_TIM_IPMS 2-isoprop 97.2 0.019 4.1E-07 55.4 16.3 142 156-310 16-163 (268)
164 cd07939 DRE_TIM_NifV Streptomy 97.2 0.018 3.9E-07 55.2 15.9 139 156-310 16-159 (259)
165 cd07948 DRE_TIM_HCS Saccharomy 97.2 0.032 6.9E-07 54.0 17.6 139 156-310 18-161 (262)
166 TIGR02090 LEU1_arch isopropylm 97.0 0.032 7E-07 56.4 16.6 142 156-310 18-161 (363)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 96.9 0.052 1.1E-06 52.2 16.3 137 156-310 18-161 (263)
168 TIGR02660 nifV_homocitr homoci 96.9 0.036 7.9E-07 56.0 15.4 138 156-309 19-161 (365)
169 PRK08195 4-hyroxy-2-oxovalerat 96.8 0.054 1.2E-06 54.3 16.4 138 156-310 21-164 (337)
170 cd07944 DRE_TIM_HOA_like 4-hyd 96.8 0.042 9.1E-07 53.2 15.1 140 156-310 16-158 (266)
171 PRK11858 aksA trans-homoaconit 96.8 0.047 1E-06 55.5 15.9 139 156-310 22-165 (378)
172 TIGR03217 4OH_2_O_val_ald 4-hy 96.8 0.07 1.5E-06 53.4 16.4 136 156-310 20-163 (333)
173 PF00682 HMGL-like: HMGL-like 96.2 0.051 1.1E-06 51.0 10.7 143 156-310 10-157 (237)
174 PRK09389 (R)-citramalate synth 96.1 0.13 2.8E-06 54.1 14.6 138 156-309 20-162 (488)
175 cd07945 DRE_TIM_CMS Leptospira 96.1 0.22 4.9E-06 48.6 15.2 140 156-310 15-167 (280)
176 COG0602 NrdG Organic radical a 95.9 0.036 7.9E-07 52.0 8.5 70 129-205 23-98 (212)
177 PRK00915 2-isopropylmalate syn 95.7 0.22 4.7E-06 52.7 14.2 138 156-309 22-168 (513)
178 PRK08091 ribulose-phosphate 3- 95.6 0.32 7E-06 46.2 13.4 158 157-344 22-179 (228)
179 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.4 0.4 8.7E-06 46.6 13.8 139 156-310 17-169 (275)
180 cd07941 DRE_TIM_LeuA3 Desulfob 95.3 0.92 2E-05 44.0 16.0 145 156-310 16-171 (273)
181 PRK09282 pyruvate carboxylase 95.1 0.7 1.5E-05 49.9 15.6 139 156-310 22-174 (592)
182 PF04481 DUF561: Protein of un 94.9 0.78 1.7E-05 43.4 13.4 128 157-309 24-151 (242)
183 PRK12331 oxaloacetate decarbox 94.8 1.2 2.6E-05 46.5 16.1 136 156-310 22-174 (448)
184 COG0119 LeuA Isopropylmalate/h 94.7 0.44 9.6E-06 49.1 12.3 141 156-309 20-165 (409)
185 TIGR01108 oadA oxaloacetate de 94.6 1.1 2.4E-05 48.3 15.7 138 156-309 17-168 (582)
186 TIGR00973 leuA_bact 2-isopropy 94.5 1.1 2.3E-05 47.4 15.0 138 156-309 19-165 (494)
187 TIGR01182 eda Entner-Doudoroff 94.2 1.1 2.4E-05 41.9 12.8 112 157-310 17-128 (204)
188 PRK14057 epimerase; Provisiona 94.2 1.1 2.3E-05 43.5 12.9 155 157-343 29-192 (254)
189 PRK14041 oxaloacetate decarbox 94.0 2.2 4.8E-05 44.8 15.9 136 156-310 21-173 (467)
190 PRK14024 phosphoribosyl isomer 93.9 1.4 3.1E-05 41.8 13.3 162 160-349 32-197 (241)
191 cd04731 HisF The cyclase subun 93.7 2.5 5.5E-05 39.8 14.5 133 159-311 26-170 (243)
192 PF01081 Aldolase: KDPG and KH 93.4 1.2 2.7E-05 41.3 11.6 112 157-310 17-128 (196)
193 PRK12344 putative alpha-isopro 93.4 1.4 3.1E-05 46.8 13.6 140 156-309 23-177 (524)
194 PRK12330 oxaloacetate decarbox 93.4 2.4 5.3E-05 44.8 15.0 135 156-309 23-174 (499)
195 PRK14040 oxaloacetate decarbox 93.2 1.9 4.2E-05 46.5 14.3 138 156-309 23-174 (593)
196 TIGR03572 WbuZ glycosyl amidat 93.0 3 6.5E-05 39.0 13.7 161 160-349 30-204 (232)
197 PF00834 Ribul_P_3_epim: Ribul 92.9 1.6 3.5E-05 40.6 11.5 157 157-345 9-167 (201)
198 PRK06015 keto-hydroxyglutarate 92.9 2.5 5.4E-05 39.5 12.8 113 157-311 13-125 (201)
199 TIGR00977 LeuA_rel 2-isopropyl 92.7 7.6 0.00016 41.4 17.7 141 156-310 19-174 (526)
200 PRK00748 1-(5-phosphoribosyl)- 92.7 2.4 5.1E-05 39.5 12.6 161 160-349 30-197 (233)
201 PLN03228 methylthioalkylmalate 92.4 2.6 5.6E-05 44.7 13.6 136 156-310 102-259 (503)
202 PRK05718 keto-hydroxyglutarate 92.2 4 8.7E-05 38.3 13.4 112 157-310 24-135 (212)
203 cd07947 DRE_TIM_Re_CS Clostrid 92.2 1.4 3.1E-05 43.0 10.7 132 157-310 18-170 (279)
204 cd00452 KDPG_aldolase KDPG and 92.1 5.8 0.00012 36.1 14.0 113 157-311 13-125 (190)
205 PRK08005 epimerase; Validated 92.0 8.1 0.00017 36.3 15.1 117 157-297 10-127 (210)
206 TIGR00735 hisF imidazoleglycer 92.0 4.8 0.0001 38.5 13.9 130 160-310 30-175 (254)
207 PRK09722 allulose-6-phosphate 91.8 5 0.00011 38.2 13.6 155 157-343 12-168 (229)
208 PRK07114 keto-hydroxyglutarate 91.8 5 0.00011 38.1 13.5 116 157-310 24-139 (222)
209 PRK08745 ribulose-phosphate 3- 91.6 5.8 0.00012 37.6 13.8 117 157-297 13-131 (223)
210 PRK14042 pyruvate carboxylase 91.3 2.1 4.7E-05 46.2 11.7 81 157-238 23-115 (596)
211 cd02810 DHOD_DHPD_FMN Dihydroo 91.2 4.8 0.0001 38.9 13.2 114 190-311 80-197 (289)
212 PRK06552 keto-hydroxyglutarate 91.2 5.8 0.00012 37.3 13.2 112 157-310 22-136 (213)
213 TIGR01163 rpe ribulose-phospha 90.9 8.7 0.00019 34.9 14.0 77 157-238 8-85 (210)
214 COG0685 MetF 5,10-methylenetet 90.8 2.6 5.7E-05 41.4 10.9 99 157-269 89-199 (291)
215 PRK02083 imidazole glycerol ph 90.7 7.3 0.00016 37.0 13.8 131 159-310 29-173 (253)
216 cd04732 HisA HisA. Phosphorib 90.7 3.6 7.7E-05 38.3 11.4 131 159-310 28-166 (234)
217 PRK12581 oxaloacetate decarbox 90.6 8.3 0.00018 40.6 14.9 134 157-309 32-182 (468)
218 TIGR01496 DHPS dihydropteroate 90.4 9.5 0.00021 36.8 14.3 77 156-238 19-101 (257)
219 PTZ00314 inosine-5'-monophosph 90.2 7.6 0.00017 41.1 14.5 131 158-313 239-376 (495)
220 PF05853 DUF849: Prokaryotic p 90.0 3.5 7.5E-05 40.2 11.0 142 156-301 22-196 (272)
221 TIGR01859 fruc_bis_ald_ fructo 89.9 12 0.00027 36.5 14.8 167 157-349 24-207 (282)
222 TIGR02146 LysS_fung_arch homoc 89.8 21 0.00045 35.2 16.6 142 156-310 16-159 (344)
223 cd00377 ICL_PEPM Members of th 89.6 2.6 5.7E-05 40.2 9.6 185 165-360 21-238 (243)
224 PRK01033 imidazole glycerol ph 89.6 11 0.00023 36.3 13.9 130 160-310 30-172 (258)
225 cd07942 DRE_TIM_LeuA Mycobacte 89.4 15 0.00032 36.1 14.9 138 156-309 19-181 (284)
226 PRK13585 1-(5-phosphoribosyl)- 89.4 5.8 0.00013 37.2 11.8 130 160-310 32-169 (241)
227 PLN02321 2-isopropylmalate syn 89.2 5.6 0.00012 43.4 12.8 140 156-309 104-259 (632)
228 TIGR03128 RuMP_HxlA 3-hexulose 88.9 9.7 0.00021 34.7 12.6 118 157-310 9-133 (206)
229 PLN02446 (5-phosphoribosyl)-5- 88.9 13 0.00029 36.1 14.0 161 159-349 42-214 (262)
230 COG1856 Uncharacterized homolo 88.6 7.1 0.00015 37.3 11.4 110 193-309 136-251 (275)
231 PRK06806 fructose-bisphosphate 88.4 20 0.00043 35.2 15.0 167 157-349 26-207 (281)
232 PRK05096 guanosine 5'-monophos 88.4 2 4.4E-05 43.2 8.1 71 159-239 107-179 (346)
233 cd00739 DHPS DHPS subgroup of 88.2 11 0.00023 36.5 12.9 77 156-237 20-101 (257)
234 TIGR00970 leuA_yeast 2-isoprop 87.9 10 0.00022 40.9 13.6 140 156-305 44-199 (564)
235 TIGR00007 phosphoribosylformim 87.9 10 0.00023 35.2 12.3 131 160-310 28-165 (230)
236 TIGR02320 PEP_mutase phosphoen 87.8 12 0.00025 36.9 13.0 188 173-370 38-262 (285)
237 cd00950 DHDPS Dihydrodipicolin 87.8 6.2 0.00013 38.1 11.1 102 222-342 24-126 (284)
238 COG0159 TrpA Tryptophan syntha 87.8 2.6 5.6E-05 41.0 8.3 110 195-309 4-128 (265)
239 TIGR03249 KdgD 5-dehydro-4-deo 87.5 5.2 0.00011 39.1 10.4 92 207-309 7-105 (296)
240 TIGR01303 IMP_DH_rel_1 IMP deh 87.4 2.5 5.4E-05 44.5 8.5 133 160-313 224-360 (475)
241 PRK00043 thiE thiamine-phospha 87.1 16 0.00036 33.1 13.0 113 160-313 21-134 (212)
242 cd04740 DHOD_1B_like Dihydroor 87.1 16 0.00034 35.5 13.5 167 158-346 100-289 (296)
243 TIGR01302 IMP_dehydrog inosine 87.0 9.6 0.00021 39.7 12.6 129 160-313 223-359 (450)
244 TIGR00262 trpA tryptophan synt 86.9 14 0.0003 35.6 12.8 140 157-302 21-196 (256)
245 COG0800 Eda 2-keto-3-deoxy-6-p 86.8 8.8 0.00019 36.1 10.9 112 157-310 22-133 (211)
246 cd00945 Aldolase_Class_I Class 86.5 22 0.00048 31.4 13.4 131 158-310 11-149 (201)
247 PF00478 IMPDH: IMP dehydrogen 86.5 3.4 7.4E-05 41.8 8.6 135 160-313 107-243 (352)
248 cd04724 Tryptophan_synthase_al 86.1 3.6 7.7E-05 39.2 8.2 93 157-250 11-125 (242)
249 KOG2550 IMP dehydrogenase/GMP 85.9 2.5 5.4E-05 43.5 7.2 102 160-270 250-353 (503)
250 cd00564 TMP_TenI Thiamine mono 85.8 23 0.00049 31.3 12.9 66 159-236 11-76 (196)
251 cd00537 MTHFR Methylenetetrahy 85.7 11 0.00023 36.3 11.5 50 157-206 70-125 (274)
252 PRK05458 guanosine 5'-monophos 85.0 20 0.00043 36.0 13.1 132 161-313 97-233 (326)
253 cd00331 IGPS Indole-3-glycerol 84.9 31 0.00068 31.7 13.8 121 157-310 28-148 (217)
254 PRK11613 folP dihydropteroate 84.9 22 0.00048 34.9 13.2 139 156-303 34-208 (282)
255 TIGR01037 pyrD_sub1_fam dihydr 84.8 21 0.00046 34.7 13.2 115 188-310 71-189 (300)
256 PRK08883 ribulose-phosphate 3- 84.7 15 0.00032 34.6 11.6 116 157-296 9-126 (220)
257 PRK03170 dihydrodipicolinate s 84.6 8.7 0.00019 37.3 10.3 77 222-309 25-102 (292)
258 PTZ00170 D-ribulose-5-phosphat 84.5 13 0.00029 35.0 11.2 82 157-242 16-98 (228)
259 cd04723 HisA_HisF Phosphoribos 84.4 16 0.00034 34.6 11.6 128 159-310 34-165 (233)
260 cd02803 OYE_like_FMN_family Ol 84.3 19 0.00041 35.3 12.7 52 261-312 195-250 (327)
261 PRK07807 inosine 5-monophospha 84.2 3.9 8.5E-05 43.1 8.1 133 160-313 226-362 (479)
262 KOG2535 RNA polymerase II elon 83.9 13 0.00028 37.7 11.0 135 160-300 153-313 (554)
263 PRK03620 5-dehydro-4-deoxygluc 83.7 12 0.00026 36.8 10.9 91 208-309 10-107 (303)
264 PRK13111 trpA tryptophan synth 83.7 25 0.00054 34.0 12.9 17 253-269 69-85 (258)
265 PRK02227 hypothetical protein; 83.0 29 0.00063 33.3 12.7 161 154-337 61-232 (238)
266 PF00977 His_biosynth: Histidi 82.7 18 0.00038 34.1 11.2 168 157-354 26-202 (229)
267 PRK13587 1-(5-phosphoribosyl)- 82.5 41 0.00089 31.9 13.7 130 160-310 31-168 (234)
268 PF00701 DHDPS: Dihydrodipicol 82.2 7.7 0.00017 37.6 8.8 77 222-309 25-102 (289)
269 KOG2368 Hydroxymethylglutaryl- 82.2 20 0.00044 34.3 11.1 145 157-313 37-192 (316)
270 TIGR00676 fadh2 5,10-methylene 82.2 9.7 0.00021 36.9 9.5 111 157-285 70-192 (272)
271 PF04476 DUF556: Protein of un 82.1 24 0.00051 33.9 11.7 162 154-337 61-233 (235)
272 PRK02227 hypothetical protein; 82.0 50 0.0011 31.7 14.1 167 165-349 12-187 (238)
273 PF01207 Dus: Dihydrouridine s 81.6 7.7 0.00017 38.3 8.7 118 223-349 70-190 (309)
274 PRK08185 hypothetical protein; 81.6 43 0.00093 32.9 13.7 136 157-309 21-168 (283)
275 PF00290 Trp_syntA: Tryptophan 81.4 4.2 9E-05 39.5 6.5 47 222-269 27-83 (259)
276 cd02930 DCR_FMN 2,4-dienoyl-Co 81.2 24 0.00051 35.4 12.2 54 258-311 188-245 (353)
277 PRK07709 fructose-bisphosphate 81.1 59 0.0013 32.0 15.5 169 157-346 26-207 (285)
278 COG0821 gcpE 1-hydroxy-2-methy 81.0 19 0.00041 36.3 11.0 149 157-344 33-196 (361)
279 PLN02334 ribulose-phosphate 3- 80.9 11 0.00024 35.4 9.1 78 158-241 18-97 (229)
280 cd00384 ALAD_PBGS Porphobilino 80.8 13 0.00028 37.0 9.7 54 156-211 47-107 (314)
281 TIGR01305 GMP_reduct_1 guanosi 80.6 8.1 0.00018 38.9 8.4 68 163-239 109-178 (343)
282 PRK07259 dihydroorotate dehydr 80.5 21 0.00046 34.8 11.3 139 158-310 102-263 (301)
283 COG4474 Uncharacterized protei 80.5 3 6.5E-05 37.9 4.8 53 159-217 28-80 (180)
284 TIGR00677 fadh2_euk methylenet 80.3 14 0.00031 36.0 10.0 110 158-285 72-196 (281)
285 PLN02540 methylenetetrahydrofo 80.3 23 0.0005 38.2 12.2 51 157-207 70-126 (565)
286 PRK14114 1-(5-phosphoribosyl)- 80.2 42 0.00092 32.0 12.9 162 159-354 29-199 (241)
287 PRK06801 hypothetical protein; 80.2 62 0.0013 31.9 14.3 169 157-347 26-208 (286)
288 PF01116 F_bP_aldolase: Fructo 79.7 26 0.00056 34.5 11.5 171 157-346 25-209 (287)
289 PRK12737 gatY tagatose-bisphos 79.6 50 0.0011 32.5 13.5 169 157-346 26-206 (284)
290 cd00954 NAL N-Acetylneuraminic 79.6 19 0.00041 35.0 10.5 77 222-309 24-102 (288)
291 TIGR00737 nifR3_yhdG putative 79.4 22 0.00047 35.1 11.0 84 222-310 78-167 (319)
292 PRK07107 inosine 5-monophospha 78.8 7.2 0.00016 41.4 7.8 75 157-240 238-313 (502)
293 cd04739 DHOD_like Dihydroorota 78.8 69 0.0015 31.8 14.5 169 158-346 110-296 (325)
294 cd00408 DHDPS-like Dihydrodipi 78.8 15 0.00032 35.3 9.4 77 222-309 21-98 (281)
295 PRK09140 2-dehydro-3-deoxy-6-p 78.7 33 0.00071 31.9 11.4 112 157-310 19-131 (206)
296 TIGR01769 GGGP geranylgeranylg 78.6 20 0.00043 33.6 9.9 73 156-236 130-202 (205)
297 PRK08195 4-hyroxy-2-oxovalerat 78.6 44 0.00096 33.5 13.1 77 157-238 141-220 (337)
298 PF01136 Peptidase_U32: Peptid 78.4 15 0.00032 34.2 9.1 68 160-241 2-69 (233)
299 PRK06843 inosine 5-monophospha 78.1 7.9 0.00017 40.0 7.7 134 161-313 153-288 (404)
300 TIGR02313 HpaI-NOT-DapA 2,4-di 78.0 32 0.00069 33.6 11.7 78 222-310 24-102 (294)
301 CHL00200 trpA tryptophan synth 78.0 27 0.00059 33.9 11.0 140 157-302 26-200 (263)
302 cd00381 IMPDH IMPDH: The catal 77.8 12 0.00027 37.2 8.8 134 161-313 94-229 (325)
303 cd02801 DUS_like_FMN Dihydrour 77.6 20 0.00043 33.1 9.7 83 222-310 70-158 (231)
304 TIGR01303 IMP_DH_rel_1 IMP deh 77.6 66 0.0014 34.0 14.4 173 157-356 159-341 (475)
305 PRK07565 dihydroorotate dehydr 77.6 77 0.0017 31.5 14.4 112 190-311 84-198 (334)
306 PRK09195 gatY tagatose-bisphos 77.4 54 0.0012 32.3 13.0 168 157-346 26-206 (284)
307 PRK05567 inosine 5'-monophosph 77.4 36 0.00078 35.8 12.5 130 161-313 228-363 (486)
308 cd00951 KDGDH 5-dehydro-4-deox 77.3 25 0.00054 34.2 10.7 51 255-309 50-100 (289)
309 PRK07455 keto-hydroxyglutarate 77.0 59 0.0013 29.7 14.5 112 157-310 21-132 (187)
310 TIGR00126 deoC deoxyribose-pho 76.8 66 0.0014 30.2 18.2 165 156-353 14-185 (211)
311 PF02581 TMP-TENI: Thiamine mo 76.6 48 0.001 29.7 11.6 146 159-349 11-156 (180)
312 CHL00200 trpA tryptophan synth 76.5 62 0.0014 31.4 13.0 124 163-313 109-234 (263)
313 TIGR00674 dapA dihydrodipicoli 76.5 26 0.00057 33.9 10.5 78 222-310 22-100 (285)
314 PLN02617 imidazole glycerol ph 76.2 38 0.00083 36.3 12.4 148 156-310 263-458 (538)
315 TIGR00262 trpA tryptophan synt 76.1 68 0.0015 30.9 13.1 124 163-313 105-230 (256)
316 PRK04147 N-acetylneuraminate l 75.8 31 0.00066 33.6 10.8 77 222-309 27-105 (293)
317 COG0106 HisA Phosphoribosylfor 75.6 56 0.0012 31.5 12.1 163 158-349 29-198 (241)
318 PRK03739 2-isopropylmalate syn 75.3 71 0.0015 34.4 14.2 133 156-301 48-196 (552)
319 TIGR01858 tag_bisphos_ald clas 75.1 88 0.0019 30.7 15.0 169 157-346 24-204 (282)
320 cd00958 DhnA Class I fructose- 75.1 29 0.00062 32.4 10.1 130 158-313 74-217 (235)
321 TIGR02311 HpaI 2,4-dihydroxyhe 75.1 55 0.0012 31.3 12.2 134 165-312 25-172 (249)
322 PRK10550 tRNA-dihydrouridine s 75.0 33 0.00072 34.0 10.9 85 223-310 79-168 (312)
323 TIGR00640 acid_CoA_mut_C methy 74.8 31 0.00066 29.9 9.4 68 164-238 44-111 (132)
324 PRK06512 thiamine-phosphate py 74.7 44 0.00095 31.5 11.2 114 159-313 25-141 (221)
325 COG0036 Rpe Pentose-5-phosphat 74.6 80 0.0017 30.0 15.4 116 157-296 13-129 (220)
326 COG0107 HisF Imidazoleglycerol 74.6 9 0.0002 36.7 6.4 80 141-229 138-218 (256)
327 PRK05581 ribulose-phosphate 3- 74.5 52 0.0011 30.1 11.5 77 157-238 13-90 (220)
328 PRK12999 pyruvate carboxylase; 74.5 42 0.00091 39.3 13.0 137 156-310 551-711 (1146)
329 PRK13586 1-(5-phosphoribosyl)- 74.4 68 0.0015 30.4 12.5 128 160-310 30-166 (232)
330 TIGR00683 nanA N-acetylneurami 74.2 35 0.00077 33.3 10.8 51 255-309 51-102 (290)
331 TIGR03239 GarL 2-dehydro-3-deo 73.9 62 0.0013 31.1 12.2 135 164-312 24-171 (249)
332 TIGR03572 WbuZ glycosyl amidat 73.9 12 0.00025 35.0 7.1 74 159-238 152-226 (232)
333 COG4822 CbiK Cobalamin biosynt 73.9 49 0.0011 31.6 10.9 196 156-369 56-259 (265)
334 cd00952 CHBPH_aldolase Trans-o 73.9 41 0.00089 33.2 11.2 101 222-341 32-133 (309)
335 PRK08610 fructose-bisphosphate 73.6 97 0.0021 30.5 14.8 170 157-346 26-207 (286)
336 COG1751 Uncharacterized conser 73.3 52 0.0011 29.8 10.4 114 154-283 7-134 (186)
337 PRK13397 3-deoxy-7-phosphohept 73.3 44 0.00096 32.3 10.9 120 158-305 27-151 (250)
338 PRK13587 1-(5-phosphoribosyl)- 73.2 16 0.00034 34.7 7.9 73 160-238 148-220 (234)
339 cd02071 MM_CoA_mut_B12_BD meth 73.1 20 0.00043 30.2 7.7 71 157-238 37-108 (122)
340 cd00429 RPE Ribulose-5-phospha 73.1 71 0.0015 28.7 16.2 77 156-237 8-85 (211)
341 PRK14057 epimerase; Provisiona 72.9 18 0.0004 35.0 8.3 71 281-369 101-179 (254)
342 COG1964 Predicted Fe-S oxidore 72.8 60 0.0013 34.1 12.2 141 146-302 78-228 (475)
343 PF00977 His_biosynth: Histidi 72.6 16 0.00036 34.3 7.8 72 159-236 146-217 (229)
344 cd00959 DeoC 2-deoxyribose-5-p 72.5 79 0.0017 29.0 15.4 160 157-349 14-181 (203)
345 TIGR01037 pyrD_sub1_fam dihydr 72.4 91 0.002 30.2 13.2 172 157-346 100-292 (300)
346 COG3246 Uncharacterized conser 72.1 27 0.00059 34.5 9.2 61 156-216 25-85 (298)
347 PRK09432 metF 5,10-methylenete 71.9 32 0.00069 33.9 9.9 49 157-205 94-142 (296)
348 PRK08318 dihydropyrimidine deh 71.9 67 0.0014 33.0 12.7 145 158-307 111-312 (420)
349 PF02219 MTHFR: Methylenetetra 71.8 19 0.0004 35.1 8.2 110 157-282 82-208 (287)
350 PRK12330 oxaloacetate decarbox 71.6 40 0.00087 35.8 11.1 81 157-241 152-234 (499)
351 PRK07315 fructose-bisphosphate 71.6 57 0.0012 32.1 11.5 135 157-310 26-173 (293)
352 PF01729 QRPTase_C: Quinolinat 71.5 20 0.00043 32.5 7.7 65 164-239 91-155 (169)
353 PRK07565 dihydroorotate dehydr 71.5 88 0.0019 31.1 13.1 170 158-346 112-298 (334)
354 PRK05835 fructose-bisphosphate 71.3 1.1E+02 0.0025 30.4 15.1 172 157-349 25-214 (307)
355 PF07745 Glyco_hydro_53: Glyco 71.2 66 0.0014 32.4 12.1 89 222-312 113-207 (332)
356 PLN02274 inosine-5'-monophosph 71.0 16 0.00034 38.9 8.0 131 161-313 248-383 (505)
357 PF00490 ALAD: Delta-aminolevu 71.0 9.7 0.00021 38.0 5.9 56 157-212 54-116 (324)
358 PRK10558 alpha-dehydro-beta-de 71.0 79 0.0017 30.5 12.2 132 164-312 31-178 (256)
359 TIGR02320 PEP_mutase phosphoen 71.0 37 0.0008 33.4 10.0 74 158-239 167-240 (285)
360 cd02801 DUS_like_FMN Dihydrour 70.9 83 0.0018 28.9 12.1 138 157-310 64-213 (231)
361 PF04127 DFP: DNA / pantothena 70.8 6.6 0.00014 36.1 4.5 127 162-310 32-166 (185)
362 PLN02417 dihydrodipicolinate s 70.7 50 0.0011 32.0 10.9 77 222-309 25-102 (280)
363 PRK04165 acetyl-CoA decarbonyl 70.6 1.5E+02 0.0032 31.3 15.1 149 157-345 102-259 (450)
364 PF06180 CbiK: Cobalt chelatas 70.5 35 0.00076 33.2 9.6 132 158-301 120-259 (262)
365 PRK00278 trpC indole-3-glycero 70.0 1.1E+02 0.0023 29.5 13.6 120 158-310 68-187 (260)
366 cd04740 DHOD_1B_like Dihydroor 69.7 83 0.0018 30.4 12.2 81 223-311 106-187 (296)
367 PRK04452 acetyl-CoA decarbonyl 69.3 1.3E+02 0.0028 30.2 14.5 156 163-346 78-240 (319)
368 cd02803 OYE_like_FMN_family Ol 69.2 20 0.00044 35.1 8.0 80 157-239 225-311 (327)
369 cd04724 Tryptophan_synthase_al 69.2 42 0.0009 31.9 9.8 18 331-348 142-160 (242)
370 cd04733 OYE_like_2_FMN Old yel 69.2 41 0.0009 33.4 10.2 89 223-311 153-257 (338)
371 PF04476 DUF556: Protein of un 68.7 1.1E+02 0.0025 29.3 15.6 166 165-349 12-187 (235)
372 PRK12738 kbaY tagatose-bisphos 68.6 1.3E+02 0.0027 29.8 15.1 168 157-346 26-206 (286)
373 COG1105 FruK Fructose-1-phosph 68.5 89 0.0019 31.2 12.1 82 156-247 110-193 (310)
374 cd02810 DHOD_DHPD_FMN Dihydroo 68.5 33 0.00072 33.0 9.1 81 157-239 173-272 (289)
375 KOG4175 Tryptophan synthase al 68.4 70 0.0015 30.3 10.5 26 328-355 161-189 (268)
376 PRK12857 fructose-1,6-bisphosp 68.4 1.3E+02 0.0027 29.7 14.9 169 157-346 26-206 (284)
377 COG0502 BioB Biotin synthase a 68.3 1.6 3.5E-05 43.8 -0.1 38 143-182 102-140 (335)
378 PRK00366 ispG 4-hydroxy-3-meth 68.2 67 0.0015 32.7 11.2 126 157-310 39-180 (360)
379 PLN02591 tryptophan synthase 68.0 1.2E+02 0.0026 29.2 13.4 124 163-313 96-221 (250)
380 PRK08999 hypothetical protein; 68.0 60 0.0013 31.6 10.9 60 280-349 226-287 (312)
381 PRK13586 1-(5-phosphoribosyl)- 68.0 23 0.00049 33.7 7.6 69 161-236 147-215 (232)
382 cd04735 OYE_like_4_FMN Old yel 67.8 19 0.0004 36.2 7.4 93 157-251 232-327 (353)
383 cd00956 Transaldolase_FSA Tran 67.8 50 0.0011 30.8 9.8 79 166-251 115-193 (211)
384 cd04823 ALAD_PBGS_aspartate_ri 67.8 17 0.00036 36.3 6.8 56 156-211 50-112 (320)
385 cd07945 DRE_TIM_CMS Leptospira 67.7 31 0.00068 33.6 8.8 76 158-238 145-222 (280)
386 PRK05437 isopentenyl pyrophosp 67.6 1.2E+02 0.0025 30.7 13.1 135 163-311 80-218 (352)
387 TIGR00735 hisF imidazoleglycer 67.5 40 0.00087 32.1 9.3 73 158-236 153-226 (254)
388 cd07938 DRE_TIM_HMGL 3-hydroxy 67.4 31 0.00068 33.4 8.7 78 157-238 146-224 (274)
389 PRK08091 ribulose-phosphate 3- 67.4 26 0.00055 33.4 7.8 24 281-304 94-117 (228)
390 PRK09283 delta-aminolevulinic 67.3 18 0.00038 36.2 6.9 54 156-211 55-115 (323)
391 PF00682 HMGL-like: HMGL-like 67.2 31 0.00066 32.2 8.4 79 157-239 134-213 (237)
392 cd04734 OYE_like_3_FMN Old yel 67.1 93 0.002 31.2 12.2 85 224-310 146-249 (343)
393 PLN02274 inosine-5'-monophosph 67.1 1.8E+02 0.0039 31.0 14.9 165 158-349 179-358 (505)
394 PLN02495 oxidoreductase, actin 67.1 60 0.0013 33.3 11.0 119 189-313 94-217 (385)
395 PRK13111 trpA tryptophan synth 67.0 1E+02 0.0022 29.8 12.0 121 163-311 107-229 (258)
396 TIGR00007 phosphoribosylformim 66.9 22 0.00048 33.0 7.3 73 160-238 145-217 (230)
397 TIGR01235 pyruv_carbox pyruvat 66.7 1E+02 0.0022 36.3 13.8 137 157-309 550-708 (1143)
398 PRK05692 hydroxymethylglutaryl 66.6 34 0.00074 33.5 8.8 78 157-239 152-231 (287)
399 PRK01130 N-acetylmannosamine-6 66.5 1.1E+02 0.0024 28.3 12.1 122 164-312 79-204 (221)
400 cd04732 HisA HisA. Phosphorib 66.5 24 0.00053 32.7 7.5 75 159-239 145-219 (234)
401 cd07941 DRE_TIM_LeuA3 Desulfob 66.4 39 0.00085 32.6 9.1 77 157-238 148-226 (273)
402 PRK07028 bifunctional hexulose 66.2 1.5E+02 0.0032 30.6 13.8 123 157-311 13-139 (430)
403 PLN02591 tryptophan synthase 66.1 47 0.001 32.0 9.5 45 290-348 118-162 (250)
404 cd02940 DHPD_FMN Dihydropyrimi 66.0 88 0.0019 30.5 11.6 142 158-310 111-281 (299)
405 TIGR00737 nifR3_yhdG putative 66.0 1.4E+02 0.003 29.4 13.1 139 157-312 72-224 (319)
406 cd02932 OYE_YqiM_FMN Old yello 66.0 56 0.0012 32.4 10.4 52 259-310 206-261 (336)
407 cd01299 Met_dep_hydrolase_A Me 65.7 1.2E+02 0.0025 29.6 12.5 89 157-251 117-212 (342)
408 PRK07998 gatY putative fructos 65.7 1.4E+02 0.0031 29.3 13.0 167 158-346 27-203 (283)
409 PRK07428 nicotinate-nucleotide 65.6 37 0.0008 33.5 8.8 65 164-239 207-271 (288)
410 cd02812 PcrB_like PcrB_like pr 65.4 85 0.0018 29.7 10.9 74 156-239 131-204 (219)
411 cd00423 Pterin_binding Pterin 64.8 1.3E+02 0.0029 28.7 14.1 78 156-238 20-102 (258)
412 TIGR01306 GMP_reduct_2 guanosi 64.6 36 0.00078 34.1 8.6 130 158-313 92-230 (321)
413 PRK12290 thiE thiamine-phospha 64.6 1E+02 0.0022 32.3 12.1 108 165-313 222-330 (437)
414 TIGR00875 fsa_talC_mipB fructo 64.6 77 0.0017 29.8 10.4 77 168-251 117-193 (213)
415 PRK00748 1-(5-phosphoribosyl)- 64.4 40 0.00087 31.2 8.5 74 159-238 145-219 (233)
416 TIGR01334 modD putative molybd 64.4 39 0.00084 33.2 8.6 65 163-238 198-262 (277)
417 cd04824 eu_ALAD_PBGS_cysteine_ 64.1 17 0.00036 36.3 6.0 56 156-211 47-110 (320)
418 COG0159 TrpA Tryptophan syntha 64.0 1.1E+02 0.0024 29.9 11.5 142 157-303 28-204 (265)
419 PRK07535 methyltetrahydrofolat 63.3 1.5E+02 0.0032 28.7 13.6 135 157-302 22-186 (261)
420 TIGR02129 hisA_euk phosphoribo 63.2 97 0.0021 30.0 11.0 157 161-349 38-208 (253)
421 PRK02506 dihydroorotate dehydr 63.1 1.6E+02 0.0035 29.0 13.4 138 168-311 31-192 (310)
422 cd07940 DRE_TIM_IPMS 2-isoprop 62.5 43 0.00094 32.1 8.6 78 157-239 140-221 (268)
423 COG3010 NanE Putative N-acetyl 62.4 36 0.00078 32.2 7.5 136 156-313 28-190 (229)
424 PF00809 Pterin_bind: Pterin b 62.2 19 0.00041 33.5 5.8 78 157-238 16-98 (210)
425 PRK09517 multifunctional thiam 62.0 99 0.0022 34.5 12.3 115 161-313 20-138 (755)
426 COG4464 CapC Capsular polysacc 61.6 1.1E+02 0.0024 29.3 10.6 75 156-230 16-93 (254)
427 PRK07896 nicotinate-nucleotide 61.2 48 0.001 32.7 8.7 64 165-239 211-274 (289)
428 PRK12331 oxaloacetate decarbox 61.2 81 0.0018 33.0 10.8 79 157-240 151-230 (448)
429 PRK14041 oxaloacetate decarbox 61.1 76 0.0016 33.5 10.6 77 157-240 150-229 (467)
430 TIGR00167 cbbA ketose-bisphosp 61.0 1.7E+02 0.0038 28.7 15.1 169 157-346 26-210 (288)
431 PRK05848 nicotinate-nucleotide 60.9 46 0.001 32.5 8.4 65 164-239 193-257 (273)
432 cd03315 MLE_like Muconate lact 60.6 1.1E+02 0.0024 29.0 11.0 148 158-348 85-237 (265)
433 PRK09196 fructose-1,6-bisphosp 60.5 1.7E+02 0.0037 29.7 12.6 177 157-349 26-236 (347)
434 PRK14847 hypothetical protein; 60.3 2E+02 0.0042 29.1 15.6 102 156-270 50-163 (333)
435 TIGR00284 dihydropteroate synt 60.2 2.1E+02 0.0046 30.5 13.8 128 160-301 165-305 (499)
436 cd03174 DRE_TIM_metallolyase D 60.0 44 0.00096 31.3 8.1 77 157-238 143-221 (265)
437 cd00947 TBP_aldolase_IIB Tagat 60.0 1.8E+02 0.0039 28.5 15.0 171 157-346 21-200 (276)
438 cd00019 AP2Ec AP endonuclease 59.9 99 0.0022 29.4 10.6 148 158-309 83-257 (279)
439 PRK13384 delta-aminolevulinic 59.5 24 0.00052 35.3 6.2 54 156-211 57-117 (322)
440 PRK13523 NADPH dehydrogenase N 59.4 32 0.0007 34.5 7.3 81 156-239 223-305 (337)
441 COG5016 Pyruvate/oxaloacetate 59.3 84 0.0018 32.7 10.1 131 157-309 25-175 (472)
442 cd07943 DRE_TIM_HOA 4-hydroxy- 59.3 61 0.0013 31.0 9.0 78 157-239 138-217 (263)
443 PTZ00314 inosine-5'-monophosph 59.0 1.8E+02 0.0038 30.9 13.1 161 163-349 181-351 (495)
444 cd04734 OYE_like_3_FMN Old yel 58.9 45 0.00098 33.4 8.3 80 157-239 225-315 (343)
445 PRK12656 fructose-6-phosphate 58.8 1.2E+02 0.0025 28.8 10.5 95 168-269 121-215 (222)
446 PRK13398 3-deoxy-7-phosphohept 58.8 80 0.0017 30.7 9.7 75 158-239 39-117 (266)
447 PRK06096 molybdenum transport 58.7 54 0.0012 32.3 8.6 65 163-238 199-263 (284)
448 cd04731 HisF The cyclase subun 58.7 69 0.0015 30.0 9.1 75 158-238 147-222 (243)
449 COG0113 HemB Delta-aminolevuli 58.4 30 0.00064 34.5 6.6 56 156-211 57-119 (330)
450 COG0329 DapA Dihydrodipicolina 58.4 83 0.0018 31.0 9.9 81 222-313 28-110 (299)
451 PRK04128 1-(5-phosphoribosyl)- 58.2 1.2E+02 0.0025 28.7 10.5 72 161-239 31-102 (228)
452 PRK13396 3-deoxy-7-phosphohept 58.1 99 0.0021 31.4 10.5 73 158-239 113-191 (352)
453 PRK10415 tRNA-dihydrouridine s 58.0 81 0.0018 31.3 9.8 75 160-239 149-224 (321)
454 COG1902 NemA NADH:flavin oxido 57.9 50 0.0011 33.6 8.4 81 156-239 233-318 (363)
455 PRK13125 trpA tryptophan synth 57.9 1.6E+02 0.0034 27.9 11.5 67 194-269 171-238 (244)
456 PF01729 QRPTase_C: Quinolinat 57.6 1.3E+02 0.0029 27.1 10.3 90 195-311 66-156 (169)
457 cd02931 ER_like_FMN Enoate red 57.5 46 0.001 33.9 8.2 93 156-251 248-349 (382)
458 PRK01362 putative translaldola 57.5 1.3E+02 0.0027 28.4 10.5 77 168-251 117-193 (214)
459 PF06180 CbiK: Cobalt chelatas 57.2 20 0.00044 34.8 5.3 175 157-345 55-236 (262)
460 TIGR02764 spore_ybaN_pdaB poly 57.2 1.4E+02 0.0031 26.6 12.4 132 164-312 49-190 (191)
461 cd07944 DRE_TIM_HOA_like 4-hyd 57.1 1.9E+02 0.0041 27.9 12.0 77 157-238 135-214 (266)
462 cd03316 MR_like Mandelate race 57.0 1.9E+02 0.0041 28.6 12.4 153 158-346 139-295 (357)
463 PRK10550 tRNA-dihydrouridine s 56.8 87 0.0019 31.1 9.8 103 159-265 147-254 (312)
464 PLN02746 hydroxymethylglutaryl 56.8 62 0.0014 32.8 8.8 52 157-212 194-245 (347)
465 PRK10128 2-keto-3-deoxy-L-rham 56.8 1.7E+02 0.0036 28.5 11.5 135 164-312 30-178 (267)
466 PRK10415 tRNA-dihydrouridine s 56.6 92 0.002 30.9 10.0 117 224-349 82-201 (321)
467 PF00478 IMPDH: IMP dehydrogen 56.5 1.6E+02 0.0034 30.0 11.6 122 164-316 52-181 (352)
468 cd04733 OYE_like_2_FMN Old yel 56.5 54 0.0012 32.6 8.3 81 156-239 232-322 (338)
469 TIGR01768 GGGP-family geranylg 56.4 1.8E+02 0.004 27.6 11.4 77 154-239 129-208 (223)
470 COG0826 Collagenase and relate 56.3 72 0.0016 32.3 9.2 92 211-310 7-99 (347)
471 cd04739 DHOD_like Dihydroorota 56.3 2.2E+02 0.0047 28.3 14.0 111 191-311 83-196 (325)
472 PRK01033 imidazole glycerol ph 56.2 43 0.00094 32.1 7.3 74 159-238 151-225 (258)
473 PLN02334 ribulose-phosphate 3- 56.1 78 0.0017 29.6 8.9 76 161-239 126-202 (229)
474 cd04738 DHOD_2_like Dihydrooro 56.0 68 0.0015 31.8 9.0 80 158-239 214-309 (327)
475 PRK13660 hypothetical protein; 56.0 18 0.00039 33.3 4.5 50 162-217 31-80 (182)
476 PRK06294 coproporphyrinogen II 55.9 2.1E+02 0.0045 28.9 12.5 15 165-179 105-119 (370)
477 PF00072 Response_reg: Respons 55.6 83 0.0018 24.5 7.9 39 196-236 59-97 (112)
478 COG0042 tRNA-dihydrouridine sy 55.6 1.7E+02 0.0037 29.2 11.7 138 157-311 76-229 (323)
479 cd02811 IDI-2_FMN Isopentenyl- 55.5 1.3E+02 0.0029 29.9 10.9 134 163-310 72-209 (326)
480 PLN02617 imidazole glycerol ph 55.3 43 0.00094 35.9 7.8 68 161-234 439-507 (538)
481 PF03932 CutC: CutC family; I 55.1 1.8E+02 0.0039 27.1 11.2 124 164-308 11-145 (201)
482 PLN02446 (5-phosphoribosyl)-5- 55.0 60 0.0013 31.6 8.0 66 161-232 164-229 (262)
483 PRK13585 1-(5-phosphoribosyl)- 55.0 48 0.001 30.9 7.4 73 161-239 150-222 (241)
484 TIGR01521 FruBisAldo_II_B fruc 55.0 2.5E+02 0.0053 28.6 14.9 179 157-349 24-234 (347)
485 cd02940 DHPD_FMN Dihydropyrimi 54.9 2.1E+02 0.0046 27.9 12.6 97 255-358 151-267 (299)
486 cd02933 OYE_like_FMN Old yello 54.7 35 0.00075 34.2 6.6 76 157-239 238-314 (338)
487 PF07056 DUF1335: Protein of u 54.5 19 0.0004 31.1 3.9 28 274-301 27-54 (131)
488 TIGR02151 IPP_isom_2 isopenten 54.5 2.1E+02 0.0045 28.6 12.1 134 163-311 73-211 (333)
489 TIGR01501 MthylAspMutase methy 54.3 61 0.0013 28.3 7.3 71 222-307 42-114 (134)
490 PRK03170 dihydrodipicolinate s 54.2 98 0.0021 29.9 9.6 29 155-183 17-45 (292)
491 TIGR03586 PseI pseudaminic aci 53.9 1.5E+02 0.0032 29.8 10.9 26 158-183 15-40 (327)
492 KOG0564 5,10-methylenetetrahyd 53.8 36 0.00078 36.1 6.6 100 157-269 89-205 (590)
493 PLN02495 oxidoreductase, actin 53.4 1.3E+02 0.0028 30.9 10.6 56 255-315 95-151 (385)
494 TIGR00559 pdxJ pyridoxine 5'-p 53.3 50 0.0011 31.7 7.0 135 159-312 72-214 (237)
495 PF03740 PdxJ: Pyridoxal phosp 53.2 67 0.0015 30.9 7.9 135 159-312 73-216 (239)
496 PRK14114 1-(5-phosphoribosyl)- 53.1 55 0.0012 31.2 7.5 65 161-231 145-209 (241)
497 PRK08444 hypothetical protein; 53.0 76 0.0017 32.1 8.8 91 254-348 109-208 (353)
498 cd07939 DRE_TIM_NifV Streptomy 52.9 79 0.0017 30.1 8.6 76 157-238 136-213 (259)
499 KOG3111 D-ribulose-5-phosphate 52.8 2E+02 0.0044 27.0 12.2 81 158-243 15-98 (224)
500 KOG0369 Pyruvate carboxylase [ 52.7 69 0.0015 35.5 8.6 177 157-344 715-938 (1176)
No 1
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.5e-108 Score=766.18 Aligned_cols=333 Identities=60% Similarity=1.049 Sum_probs=319.2
Q ss_pred HHHHhhhCCCCccccccCCCC--CCccccccCC----CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCC
Q 017179 42 LRARLASESPALSDFIDLQSN--SSYSVEVGTK----KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPN 115 (376)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn 115 (376)
|++.|+ +||+|+||++++.+ .++..+.+.+ ..++|+|+|||+++|.|+||++|+..|++++||||||||+|||
T Consensus 19 ~~~~l~-~gPs~~DFv~~d~~~~~~~~~e~~~~~~~~~~~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPN 97 (360)
T KOG2672|consen 19 FKELLA-KGPSFADFVSGDKPLRADWDFEKGRKKREGEERLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPN 97 (360)
T ss_pred hhhhhc-cCCchhhhhcCCcccccccchhhchhhhhccccccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCc
Confidence 788887 99999999999864 2333333333 3589999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH
Q 017179 116 LGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF 195 (376)
Q Consensus 116 ~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~ 195 (376)
|||||||++++++|||||+|||+|+|+|+||+|+++|.|+++||.||++.|+++++||+.||||||+||||++|+|++||
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~Hi 177 (360)
T KOG2672|consen 98 IGECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHI 177 (360)
T ss_pred hhhccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 196 ~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
+++|+.||++.|.+.||+|+|||.|+.+.++.++.+|+|+|+||+|||++|.+.||+++++|+|+|++|++|++..|. +
T Consensus 178 AkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~-l 256 (360)
T KOG2672|consen 178 AKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPG-L 256 (360)
T ss_pred HHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
.++|+||+|+|||+|++.++|++||+.++|+++|||||||+++|++|.+||+|+.|++|++++.++||+|+|||||||||
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y~AsgplvrSs 336 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLYVASGPLVRSS 336 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEEeccCceeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHhhhhhcCC
Q 017179 356 YKAGEFYIKSMIESDRAATSS 376 (376)
Q Consensus 356 y~a~~~~~~~~~~~~~~~~~~ 376 (376)
|+|||+||+|+|++|+..++|
T Consensus 337 ykage~~i~~~l~~r~~~~~s 357 (360)
T KOG2672|consen 337 YKAGEYFIKNVLEKRKSKNSS 357 (360)
T ss_pred hhhhHHHHHHHHHhcccCCCc
Confidence 999999999999999988654
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-94 Score=678.76 Aligned_cols=287 Identities=54% Similarity=0.964 Sum_probs=280.8
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017179 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (376)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r 152 (376)
...+++|+|||+++|.|..|.++++++++++||||||||.||||+|||+.+ |||||+||+.|+|+|.||.|.+++
T Consensus 19 ~~~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~-----tATFmImG~~CTR~C~FC~V~~g~ 93 (306)
T COG0320 19 EELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCRFCDVKTGR 93 (306)
T ss_pred chhccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC-----ceEEeeccchhccCCCccccCCCC
Confidence 446799999999999999999999999999999999999999999999988 999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 153 ~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
|.++|++|+.++|++++.+|++|||||||+||||+|||+.||+++|++|++.+|++.||+|+|||.|+.+.++.+.++|
T Consensus 94 -P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~ 172 (306)
T COG0320 94 -PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAG 172 (306)
T ss_pred -CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+|+|+||+|||+++|++|| ++++|+++|++|+.+++..|. +.|||+||||||||++|++++|++||+++||+++||||
T Consensus 173 pdV~nHNvETVprL~~~VR-p~A~Y~~SL~~L~~~k~~~P~-i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQY 250 (306)
T COG0320 173 PDVFNHNVETVPRLYPRVR-PGATYERSLSLLERAKELGPD-IPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQY 250 (306)
T ss_pred cchhhcccccchhcccccC-CCCcHHHHHHHHHHHHHhCCC-cccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999999999999 799999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHHHHHH
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMI 367 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~ 367 (376)
+||+.+|+||.+||+|++|++|+++|.+|||.+|+|||||||||||||.|.++..
T Consensus 251 lqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlvRSSYhA~~~~~~~~~ 305 (306)
T COG0320 251 LQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLVRSSYHADEQFAEAEV 305 (306)
T ss_pred cCCccccCCceeccCHHHHHHHHHHHHHccchhhccCcccccccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999987754
No 3
>PTZ00413 lipoate synthase; Provisional
Probab=100.00 E-value=7.7e-91 Score=684.83 Aligned_cols=337 Identities=52% Similarity=0.916 Sum_probs=310.2
Q ss_pred chHHHHHHhhhC---CCCccccccCCCCCCccccc--cCCCCCCCCCcceeecCCCCc----cHHHHHHHHhhcChhhhh
Q 017179 38 TLAGLRARLASE---SPALSDFIDLQSNSSYSVEV--GTKKKPLPKPKWMKESIPGGD----KYVQIKKKLRELKLHTVC 108 (376)
Q Consensus 38 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~wl~~~~p~~~----~~~~~~~~l~~~~L~tvc 108 (376)
-+..|+++++++ +++|.+|+.......++... .-++...++|+|||+++|.|+ +|.+++++|++++|||||
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVC 127 (398)
T PTZ00413 48 FLERFRERLNSDKTGKNSLEGFVDLPEGLKPSAASIGPIKRGEEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVC 127 (398)
T ss_pred HHHHHHHhhhcccccCCchhhhhcCccccccccccCCCccCCCCCCCcceeecCCCCccccchHHHHHHHHHhCCCceee
Confidence 478899998733 46999999776443333221 334455789999999999998 899999999999999999
Q ss_pred hhcCCCCcccccCCC-CCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC
Q 017179 109 EEAKCPNLGECWSGG-ETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDL 187 (376)
Q Consensus 109 e~A~cpn~~ec~~~~-~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl 187 (376)
|||+||||+|||+++ ++|++|||||+|||.|+++|+||++++...|..+|++||.+.|+++.++|++|+|||||+|||+
T Consensus 128 eea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL 207 (398)
T PTZ00413 128 EEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL 207 (398)
T ss_pred CCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC
Confidence 999999999999976 5789999999999999999999999986645679999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHH
Q 017179 188 ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 188 ~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
+|+|+++|+++|++|++..|++.|++++|||.|+.+.++.|+++|+|+|+|||||++++|+.||+++++|+++|++|+.+
T Consensus 208 ~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~A 287 (398)
T PTZ00413 208 PDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHV 287 (398)
T ss_pred ChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999995579999999999999
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhc
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
++.++.|+.|||++|||+|||++|++++|++|+++++|+++|||||||+++|+||.+||+|++|++|+++|.+|||.+|+
T Consensus 288 Ke~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 288 KEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred HHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEE
Confidence 99754479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhhhhhcHHHHHHHHHhhhhhc
Q 017179 348 SGPMVRSSYKAGEFYIKSMIESDRAAT 374 (376)
Q Consensus 348 sgp~vrssy~a~~~~~~~~~~~~~~~~ 374 (376)
|||||||||||+|+|+++++++|++..
T Consensus 368 sgPlVRSSY~A~e~~~~~~~~~r~~~~ 394 (398)
T PTZ00413 368 SGPLVRSSYRAGEYYIKNLVKQRRKAK 394 (398)
T ss_pred ecCccccchhccHHHHHHHHHhhhhhc
Confidence 999999999999999999999998753
No 4
>PLN02428 lipoic acid synthase
Probab=100.00 E-value=1.7e-87 Score=662.29 Aligned_cols=333 Identities=74% Similarity=1.210 Sum_probs=313.1
Q ss_pred chHHHHHHhhhCCCCccccccCCCCCCccccccCCCCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcc
Q 017179 38 TLAGLRARLASESPALSDFIDLQSNSSYSVEVGTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLG 117 (376)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ 117 (376)
-++.|+++++..||+|.+|++..... .+.+.+....++|+|||+++|.|++|.+++++|++++||||||||+|||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ 90 (349)
T PLN02428 14 TLAALRARLASESPSLGDFVSLGPYT---LGSYGRDKPLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIG 90 (349)
T ss_pred hhhHHHHhhccCCCchHhhhcCCccc---ccccccCCCCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChH
Confidence 48889999999999999999853221 122344456789999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHH
Q 017179 118 ECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQ 197 (376)
Q Consensus 118 ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~e 197 (376)
|||++++++++|+|||++||+|+++|+||++++.+++...+++||+++|+++.++|+++|+||||++||++|+|+++|++
T Consensus 91 ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~e 170 (349)
T PLN02428 91 ECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAE 170 (349)
T ss_pred HhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHH
Confidence 99999999999999999999999999999999877666788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 198 TVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 198 lvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+|+.|++..|.++|++++|+|.++++.++.|+++|+|+++||+||++++|+.|++++++|++++++|+.|++.+| |+.+
T Consensus 171 lir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~p-Gi~t 249 (349)
T PLN02428 171 TVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKP-GLLT 249 (349)
T ss_pred HHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCeE
Confidence 999999999999999999999999999999999999999999999999999999668999999999999999876 5999
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYK 357 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~ 357 (376)
+++||+|||||+||++++|++|+++++|+++||||+||++.|++|.+||+|++|++|+++|.+|||.+|+||||||||||
T Consensus 250 kSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~ 329 (349)
T PLN02428 250 KTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYK 329 (349)
T ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHhhhhhc
Q 017179 358 AGEFYIKSMIESDRAAT 374 (376)
Q Consensus 358 a~~~~~~~~~~~~~~~~ 374 (376)
|+|.|+++++++|+.+.
T Consensus 330 a~~~~~~~~~~~~~~~~ 346 (349)
T PLN02428 330 AGEFFIKSMIREDRAKA 346 (349)
T ss_pred hHHHHHHHHHHhhcccc
Confidence 99999999999998764
No 5
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=100.00 E-value=3.8e-83 Score=623.39 Aligned_cols=294 Identities=49% Similarity=0.886 Sum_probs=283.1
Q ss_pred cCCCCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCC
Q 017179 70 GTKKKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVK 149 (376)
Q Consensus 70 ~~~~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~ 149 (376)
.++....++|+|||+++|.|++|.+++++|++++||||||||+|||++|||+++ |+|||++||+|+++|+||+++
T Consensus 9 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~-----tatfm~i~~gC~~~C~FC~v~ 83 (302)
T TIGR00510 9 PNKEILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFMILGDICTRRCPFCDVA 83 (302)
T ss_pred cccCccCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC-----EEEEEecCcCcCCCCCcCCcc
Confidence 345567789999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 150 TSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 150 ~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
+.+++...+++||+++|++++++|++||+||||+++|++|+|..+|+++|++|++..|++.|++++|++.++.+.++.|+
T Consensus 84 ~~rg~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~ 163 (302)
T TIGR00510 84 HGRNPLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILL 163 (302)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHH
Confidence 88777667899999999999999999999999999999988899999999999998899999999999988889999999
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|+++||+||++++|++|+ ++++|++++++++.+++..|+ +.++|+||||||||+||++++|++|++++++.+++
T Consensus 164 ~aG~dv~~hnlEt~~~l~~~vr-r~~t~e~~Le~l~~ak~~~pg-i~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 164 DAPPDVYNHNLETVERLTPFVR-PGATYRWSLKLLERAKEYLPN-LPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred HcCchhhcccccchHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999 799999999999999998875 99999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHHHHHHHhh
Q 017179 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYIKSMIESD 370 (376)
Q Consensus 310 ~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~~~~~~~~ 370 (376)
|||+||+++|+||.+|++|++|++|+++|.+|||.+|+|||||||||||+|.|+++++++|
T Consensus 242 gqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~a~~~~~~~~~~~~ 302 (302)
T TIGR00510 242 GQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYHADSLFAAGRLVKT 302 (302)
T ss_pred ecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 6
>PRK12928 lipoyl synthase; Provisional
Probab=100.00 E-value=6.3e-75 Score=563.64 Aligned_cols=280 Identities=48% Similarity=0.850 Sum_probs=269.2
Q ss_pred CCCCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCC
Q 017179 73 KKPLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSR 152 (376)
Q Consensus 73 ~~~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r 152 (376)
....++|+|||+++|.|++|.+++.++++++|||||++|+|||+++||+++ ++|||++||+|+++|+||++++++
T Consensus 9 ~~~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~-----~~tfv~is~gC~~~C~FCa~~~g~ 83 (290)
T PRK12928 9 IPVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFLIMGSICTRRCAFCQVDKGR 83 (290)
T ss_pred CCCCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC-----EEEEEEecccccCcCCCCCccCCC
Confidence 345789999999999999999999999999999999999999999999887 999999999999999999999865
Q ss_pred CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-ChHHHHHHHHc
Q 017179 153 APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKS 231 (376)
Q Consensus 153 ~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~a 231 (376)
+..++++||+++|+++.++|+++|+||||+++|++|+|.++|+++|+.|++..|.+.|++++|++.+ ..+.|..|+++
T Consensus 84 -~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 -PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc
Confidence 5579999999999999999999999999999999988899999999999999999999999999987 78899999999
Q ss_pred CcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 232 Gld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
|+++++||+||++++++.|+ +++++++|+++++.|++..|+ +.++|+||+|||||++|++++|++|+++++|++++||
T Consensus 163 g~~i~~hnlEt~~~vl~~m~-r~~t~e~~le~l~~ak~~gp~-i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVR-RGADYQRSLDLLARAKELAPD-IPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCcHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-ceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999999999999999999 689999999999999998775 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcH
Q 017179 312 YMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGE 360 (376)
Q Consensus 312 Y~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~ 360 (376)
|+||+.+|+||.+|++|++|+.|+++|.+|||.+|+|||||||||||+|
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~rssy~a~~ 289 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPLVRSSYHAGE 289 (290)
T ss_pred CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999997
No 7
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=9.4e-64 Score=485.55 Aligned_cols=281 Identities=55% Similarity=0.981 Sum_probs=265.7
Q ss_pred CCCCCcceeecCCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC
Q 017179 75 PLPKPKWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP 154 (376)
Q Consensus 75 ~~~~p~wl~~~~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~ 154 (376)
..++|+|||+++|.|.+|.++..++++.+|+|||++|+|||+.+||+++ +++||+++|+|+++|+||+++..+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~-----~~~fi~is~GC~~~C~FC~i~~~r-~ 77 (289)
T PRK05481 4 VARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATFMILGDICTRRCPFCDVATGR-P 77 (289)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCCC-----eEEEEEecccccCCCCCceeCCCC-C
Confidence 4569999999999999999999999999999999999999999999887 999999999999999999999877 4
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 155 PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 155 ~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.+++++||+++++++.+.|+++|+||||+++|+++.|..+|+++|+.|++..|++.|++++|++....+.+..++++|++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 56999999999999999999999999999888776667899999999999889999999999887677899999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
+++|++|++++++++|+ |++++++|+++++.+++.+|+ +.++|+||+|||||+||++++|++|+++++|.+++|+|++
T Consensus 158 i~~~~~ets~~vlk~m~-r~~t~e~~le~i~~ar~~~pg-i~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 158 VFNHNLETVPRLYKRVR-PGADYERSLELLKRAKELHPG-IPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred eeeccccChHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-CeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 99999999999999999 699999999999999998875 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhhhhhcHHHH
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSSYKAGEFYI 363 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy~a~~~~~ 363 (376)
|..++++|.++++++++++|++++.++||++|+|||+|||||+|++++.
T Consensus 236 pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T PRK05481 236 PSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQAA 284 (289)
T ss_pred CccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhHHHHh
Confidence 9765889999999999999999999999999999999999999999643
No 8
>PRK08444 hypothetical protein; Provisional
Probab=99.97 E-value=6.4e-31 Score=261.92 Aligned_cols=239 Identities=15% Similarity=0.248 Sum_probs=196.1
Q ss_pred ccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCC-C--CCCCchh
Q 017179 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRA-P--PPPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~-~--~~l~~eE 161 (376)
-+.++...++. .+|..+++.|+-.+...+ |+ +++|. .++|.|..+|.||+|+...+ + ..+++||
T Consensus 13 ls~eeal~Ll~-~dl~~L~~~A~~vR~~~~--G~-----~Vt~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~ee 84 (353)
T PRK08444 13 LNQEEAVKLYD-LDLFTLGKYADKKRTKLH--GK-----KVYFNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEE 84 (353)
T ss_pred CCHHHHHHHhh-cCHHHHHHHHHHHHHHhc--CC-----EEEEEecCCcccccccccCCccCCCccCCCCCccccCCHHH
Confidence 34677777874 489999999987776532 44 66665 46999999999999987432 2 2389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCC---------CCChHHHHHHHHcC
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF---------RGNNGCVREVAKSG 232 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~---------~g~~e~l~~L~~aG 232 (376)
+++.|+++.+.|+++++|+||.+++++ .++|.++++.||+.+|++.|++++|.- ...+|.+..|+++|
T Consensus 85 I~~~a~~a~~~G~~ei~iv~G~~p~~~---~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAG 161 (353)
T PRK08444 85 ILEIVKNSVKRGIKEVHIVSAHNPNYG---YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYG 161 (353)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCC---HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 999999999999999999999887763 789999999999999999999977632 11478999999999
Q ss_pred ccccccc-ccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAHN-IET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h~-lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+|+++|+ .|+ ++++++.|+|.+.+.++|+++++.|++ .|+.++|+||+|+|||++|++++|..||++|++.++|.
T Consensus 162 l~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~---~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~ 238 (353)
T PRK08444 162 VDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK---KGKMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFN 238 (353)
T ss_pred cccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence 9999994 896 569999999767778999999999999 58999999999999999999999999999999987774
Q ss_pred cCCCCC---CCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 311 QYMRPS---KRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 311 qY~~P~---~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
.| -|. ..++|+.....+...+.++.+|..+=+
T Consensus 239 ~f-Ip~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 239 AF-IPLVYQRENNYLKVEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred EE-EecccCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 33 231 135676655456678888888887543
No 9
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-29 Score=257.78 Aligned_cols=213 Identities=18% Similarity=0.330 Sum_probs=175.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cccc--HHHHHHHHHHHHh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG--SGHFAQTVRKLKE 204 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g--~~~~~elvr~Ik~ 204 (376)
+.+|+.+++||+.+|+||++|..||.. +.++++|++.++.+++.|++||+|||+|-..| .|.+ ...|+++|+.|.+
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~ 223 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK 223 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc
Confidence 899999999999999999999988755 69999999999999999999999999984333 2221 4569999999988
Q ss_pred hCCCcEEEE--ecCCCCCChHHHHHHHHcCccccccc---cc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 205 LKPNMLIEA--LVPDFRGNNGCVREVAKSGLNVFAHN---IE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 205 ~~p~i~Ie~--l~pd~~g~~e~l~~L~~aGld~i~h~---lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
.....+|++ +.|.-. +++.++.++ .+..+++|- ++ .++++++.|+ |+++.++++++++.+++..|+ +.+.
T Consensus 224 I~G~~riR~~~~~P~~~-~d~lI~~~~-~~~kv~~~lHlPvQsGsd~ILk~M~-R~yt~e~~~~~i~k~R~~~Pd-~~i~ 299 (437)
T COG0621 224 IPGIERIRFGSSHPLEF-TDDLIEAIA-ETPKVCPHLHLPVQSGSDRILKRMK-RGYTVEEYLEIIEKLRAARPD-IAIS 299 (437)
T ss_pred CCCceEEEEecCCchhc-CHHHHHHHh-cCCcccccccCccccCCHHHHHHhC-CCcCHHHHHHHHHHHHHhCCC-ceEe
Confidence 432335554 555321 566666555 456888875 44 6789999999 999999999999999999998 9999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCC----CCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRH----MPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~----~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+||||| |||+|||.+||++++++++|.+++|+|+ ||+... .+|++.|+.++.++|++++.++...+
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999998 664222 24666677889999999988877654
No 10
>PRK05927 hypothetical protein; Provisional
Probab=99.97 E-value=5.5e-30 Score=255.03 Aligned_cols=246 Identities=15% Similarity=0.211 Sum_probs=194.3
Q ss_pred CCCCccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CC
Q 017179 86 IPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PP 157 (376)
Q Consensus 86 ~p~~~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r-~~~--~l 157 (376)
+|.....+++..++...+|..+++.|+-.+.. .++|. .++|++ ++|.|+.+|.||+++... .+. .+
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~-~~~G~-----~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~~~~y~l 76 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQ-RYPQN-----TVTYVLDANPNYTNICKIDCTFCAFYRKPHSSDAYLL 76 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC-----eEEEEcccCCccchhhhcCCccCCccCCCCCcccccc
Confidence 45556678899999888999999999877664 34344 677663 499999999999998742 222 38
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCC-------CC--ChHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF-------RG--NNGCVREV 228 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~-------~g--~~e~l~~L 228 (376)
+++|+++.++++.+.|+++++||||.+++. +.+++.++++.||+.+|++.+.+++|.- .| ..+.++.|
T Consensus 77 s~eei~~~a~~~~~~G~~~i~i~gG~~p~~---~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~L 153 (350)
T PRK05927 77 SFDEFRSLMQRYVSAGVKTVLLQGGVHPQL---GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERL 153 (350)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999999988764 3899999999999999999887776621 12 58999999
Q ss_pred HHcCcccccc-cccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 229 AKSGLNVFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 229 ~~aGld~i~h-~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+++|++.++| |+|+.+ .+++.++|.+.+.++|+++++.|++ .|+.++|+||+|+|||++|++++|..||++|.++
T Consensus 154 k~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~---lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~ 230 (350)
T PRK05927 154 WDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHR---LGFRSTATMMFGHVESPEDILLHLQTLRDAQDEN 230 (350)
T ss_pred HHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHH---cCCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999 899876 7777777656678999999999999 5899999999999999999999999999999654
Q ss_pred EEeecCC--CCCCCCCCCcccC--ChHHHHHHHHHHHHHhh
Q 017179 307 MTFGQYM--RPSKRHMPVSEYI--TPEAFERYRALGMEMGF 343 (376)
Q Consensus 307 v~~~qY~--~P~~~~~~v~~~v--~pe~~~~l~~~a~~~gf 343 (376)
-+|..|+ .|...++|+.... .+...+.++.+|..+=+
T Consensus 231 ~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~ 271 (350)
T PRK05927 231 PGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIF 271 (350)
T ss_pred CCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4443332 1112355654321 24567778888877543
No 11
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.97 E-value=1.8e-29 Score=251.52 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=192.9
Q ss_pred ccHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCC-CC--CCCchh
Q 017179 90 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRA-PP--PPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~-----m~i~d~C~~~C~FC~v~~~r~-~~--~l~~eE 161 (376)
-..++...+|...++..+++.|+-.+..- +| + .++| +..+|+|+++|+||+++...+ +. .+++||
T Consensus 11 ls~~e~~~L~~~~~~~~L~~~A~~vr~~~-~g-~-----~v~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~ee 83 (351)
T TIGR03700 11 LSFEDGLFLYASDDLLTLGELAALVRERK-HG-D-----KVYFNVNRHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEE 83 (351)
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHHHh-cC-C-----eEEEeccCCcccccccccCCccCceeCCCCCcccCCCCHHH
Confidence 34678888888888999999998776543 33 3 4555 446999999999999987432 22 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------CCC--ChHHHHHHHHcC
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSG 232 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aG 232 (376)
|++.++++.+.|+++|+|+||++++++ .+++.++++.|++.+|++.+++++|. ..| +++.++.|+++|
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p~~~---~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG 160 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHPNLP---FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG 160 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 999999999999999999999887654 78999999999999999999987763 112 478899999999
Q ss_pred cccccc-cccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAH-NIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h-~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+|.++| ++|+ .+++++++++.+.++++|+++++.|++ .|+.++++||+|+|||++|+++++..|++++++..+|.
T Consensus 161 ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~---~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~ 237 (351)
T TIGR03700 161 LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE---LGLKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQ 237 (351)
T ss_pred CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCce
Confidence 999997 6998 469999999656788999999999999 58999999999999999999999999999999653331
Q ss_pred -----cCCCCCCCCCCCccc--CChHHHHHHHHHHHHHh
Q 017179 311 -----QYMRPSKRHMPVSEY--ITPEAFERYRALGMEMG 342 (376)
Q Consensus 311 -----qY~~P~~~~~~v~~~--v~pe~~~~l~~~a~~~g 342 (376)
+|. | .++|+... ..+...+.++.+|..+=
T Consensus 238 ~fiP~~f~-~--~~tpl~~~~~~~~~~~e~lr~iA~~Rl 273 (351)
T TIGR03700 238 AFIPLAFQ-P--DNNRLNRLLAKGPTGLDDLKTLAVSRL 273 (351)
T ss_pred EEEeeccc-C--CCCcccCCCCCCCCHHHHHHHHHHHHH
Confidence 333 3 46666654 45677888999888753
No 12
>PRK05926 hypothetical protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=244.83 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=191.6
Q ss_pred ccHHHHHHHHh---hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-CC--CCC
Q 017179 90 DKYVQIKKKLR---ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-PP--PPD 158 (376)
Q Consensus 90 ~~~~~~~~~l~---~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~~--~l~ 158 (376)
-..++...++. ..+|..+++.|+..+..- + |+ +++|.. .+|.|..+|.||++....+ +. .++
T Consensus 28 ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~-~-G~-----~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls 100 (370)
T PRK05926 28 LSEEDALQLLLLTDAEDQRALWSFADLIRANR-V-GD-----TVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYT 100 (370)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHHHHHHHHHh-c-CC-----eEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCC
Confidence 34677777873 357899999998877653 3 43 566542 4999999999999886432 22 389
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------C--CCChHHHHHHH
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------F--RGNNGCVREVA 229 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~--~g~~e~l~~L~ 229 (376)
+|||++.|+++ ..|+++++|+||.++++. .+++.++++.|++.+|++.+++++|. . ....+.++.|+
T Consensus 101 ~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~---~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 101 PDQLVQSIKEN-PSPITETHIVAGCFPSCN---LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEeCcCCCCC---HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999988 699999999999887643 78999999999999999999988763 0 11478899999
Q ss_pred HcCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 230 ~aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
++|++.|+|+ +|+. +++++.++|.+.++++|+++++.||+ .|+.++++||+|+|||++|+++++..||++|++.+
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~---~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHS---LGIPSNATMLCYHRETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCcccCceEEeCCCCHHHHHHHHHHHHhcCCccC
Confidence 9999999997 9976 58888899778899999999999999 58999999999999999999999999999999987
Q ss_pred EeecCC----CCCCCCCCCcc----cCChHHHHHHHHHHHHHhhhh
Q 017179 308 TFGQYM----RPSKRHMPVSE----YITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 308 ~~~qY~----~P~~~~~~v~~----~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|..|+ +| .++++.. .......+.|+.+|.++=|+-
T Consensus 254 gf~~fIp~~f~~--~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~ 297 (370)
T PRK05926 254 GFKNFILLKFAS--ENNALGKRLRKMGSRHSIPPASIIAVARLFLD 297 (370)
T ss_pred CeeeeEecccCC--CCCcccccccccCCCChHHHHHHHHHHHHhcC
Confidence 777665 35 2344322 112334567888888875543
No 13
>PRK08445 hypothetical protein; Provisional
Probab=99.96 E-value=6.2e-28 Score=240.33 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=190.9
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCC-CCC--CCCchhHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSR-APP--PPDPDEPT 163 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r-~~~--~l~~eEi~ 163 (376)
.++...+|...+|..+++.|+-.+.. .+|++ ..+|++ .+++|..+|+||+++... .+. .+++|||+
T Consensus 6 ~~e~l~Ll~~~~l~~L~~~A~~vr~~-~~g~~-----v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~ 79 (348)
T PRK08445 6 KEEALDLIKNAPLKELGEMALERKQE-LHPEK-----ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEID 79 (348)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCc-----EEEEecccccccccccccCCccCCCccCCCCCCCeeCCHHHHH
Confidence 56777888888999999999877664 33443 666654 599999999999999742 222 37999999
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC---CC----C--ChHHHHHHHHcCcc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---FR----G--NNGCVREVAKSGLN 234 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd---~~----g--~~e~l~~L~~aGld 234 (376)
+.++++.+.|.++|+++||+.++++ .+++.++++.|++.+|++.+.++++. +. + .+|.+++|+++|++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~---~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~ 156 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLK---IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS 156 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998877654 78999999999999999999877652 11 1 37999999999999
Q ss_pred cccc-cccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec-
Q 017179 235 VFAH-NIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ- 311 (376)
Q Consensus 235 ~i~h-~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q- 311 (376)
.++| ++|+.+ ++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||++|+++++..|++++++..+|..
T Consensus 157 ~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~---~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~f 233 (348)
T PRK08445 157 SIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHL---IGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRAF 233 (348)
T ss_pred CCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeEE
Confidence 9987 599764 9999998789999999999999999 589999999999999999999999999999987543322
Q ss_pred ---CCCCCCCCCCCccc----CChHHHHHHHHHHHHHh
Q 017179 312 ---YMRPSKRHMPVSEY----ITPEAFERYRALGMEMG 342 (376)
Q Consensus 312 ---Y~~P~~~~~~v~~~----v~pe~~~~l~~~a~~~g 342 (376)
.++| .++|+... ..+...+.|+.+|..+=
T Consensus 234 i~~~~~p--~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl 269 (348)
T PRK08445 234 ILWSFQP--DNTPLKEEIPEIKKQSSNRYLRLLAVSRL 269 (348)
T ss_pred eccccCC--CCCcccccCCCCCCCCHHHHHHHHHHHHH
Confidence 3355 45665431 12445677888887753
No 14
>PRK15108 biotin synthase; Provisional
Probab=99.96 E-value=2.7e-27 Score=235.45 Aligned_cols=234 Identities=15% Similarity=0.254 Sum_probs=182.1
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEeee-CCccCCCCcCCCCCCCC--C-C-CC-CCchhHHHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMIL-GDTCTRGCRFCNVKTSR--A-P-PP-PDPDEPTNV 165 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i-~d~C~~~C~FC~v~~~r--~-~-~~-l~~eEi~~~ 165 (376)
.++...++. .+|..++..|+-.+.. .|+++ .....+++.+ +|+|+.+|.||+++... + + .. +++|||++.
T Consensus 9 ~~e~~~l~~-~~l~~l~~~A~~ir~~-~fg~~--~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 9 LSQVTELFE-KPLLELLFEAQQVHRQ-HFDPR--QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHHH-hcCCC--EEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 567777774 4899999988877654 34432 1112334444 99999999999998532 1 1 22 899999999
Q ss_pred HHHHHHCCCcEEEEEeee-CCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH
Q 017179 166 AEAIASWGLDYVVITSVD-RDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE 244 (376)
Q Consensus 166 a~al~~~G~~eIvLTsg~-r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~ 244 (376)
|+.+.+.|++++++.++. .+ ++...+++.++++.||+. ++.+.+..+.. +.+.++.|+++|+|.|+|++||++
T Consensus 85 a~~~~~~G~~~i~i~~~g~~p--~~~~~e~i~~~i~~ik~~--~i~v~~s~G~l--s~e~l~~LkeAGld~~n~~leT~p 158 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVKAM--GLETCMTLGTL--SESQAQRLANAGLDYYNHNLDTSP 158 (345)
T ss_pred HHHHHHcCCCEEEEEecCCCC--CcchHHHHHHHHHHHHhC--CCEEEEeCCcC--CHHHHHHHHHcCCCEEeeccccCh
Confidence 999999999999986553 33 222378999999999864 35554444444 689999999999999999999988
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEEeecCCCCCCCCCCC
Q 017179 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKRHMPV 322 (376)
Q Consensus 245 ~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel--~vd~v~~~qY~~P~~~~~~v 322 (376)
+.|++++ .+++|++|+++++.+++ .|+.+++++|+|+|||++|+++++..|+++ +++.|++ +++.| ..++|+
T Consensus 159 ~~f~~I~-~~~~~~~rl~~i~~a~~---~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~-~~~~P-~~gTpl 232 (345)
T PRK15108 159 EFYGNII-TTRTYQERLDTLEKVRD---AGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPI-NMLVK-VKGTPL 232 (345)
T ss_pred HhcCCCC-CCCCHHHHHHHHHHHHH---cCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEe-CCccC-CCCCCC
Confidence 9999999 58899999999999999 589999999999999999999999999999 5679999 56677 467877
Q ss_pred cccCChHHHHHHHHHHHHH
Q 017179 323 SEYITPEAFERYRALGMEM 341 (376)
Q Consensus 323 ~~~v~pe~~~~l~~~a~~~ 341 (376)
.........+.++.+|..+
T Consensus 233 ~~~~~~~~~e~lr~iAi~R 251 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVAR 251 (345)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 6543334567777777654
No 15
>PRK08508 biotin synthase; Provisional
Probab=99.96 E-value=2.5e-27 Score=229.38 Aligned_cols=197 Identities=17% Similarity=0.247 Sum_probs=165.4
Q ss_pred CCccCCCCcCCCCCCC-CC-C--CC-CCchhHHHHHHHHHHCCCcEEEEE-eeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 136 GDTCTRGCRFCNVKTS-RA-P--PP-PDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~-r~-~--~~-l~~eEi~~~a~al~~~G~~eIvLT-sg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
+.+|+.+|.||+++.. .. . .. +++||+++.|+.+.+.|+++++++ +|... .+...+++.++++.||+..|++
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~--~~~~~e~~~ei~~~ik~~~p~l 91 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL--DDKKLEYVAEAAKAVKKEVPGL 91 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC--CcccHHHHHHHHHHHHhhCCCc
Confidence 6899999999999863 21 1 23 799999999999999999999884 66532 2234789999999999988888
Q ss_pred EEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH
Q 017179 210 LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP 289 (376)
Q Consensus 210 ~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ 289 (376)
.+.++.+.. +.+.++.|+++|+|.++|++||.+++|+.++ .+++|++++++++.|++ .|+.+++++|+|+|||+
T Consensus 92 ~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~~~~~l~~i~~a~~---~Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 92 HLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHTWEERFQTCENAKE---AGLGLCSGGIFGLGESW 165 (279)
T ss_pred EEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCCHHHHHHHHHHHHH---cCCeecceeEEecCCCH
Confidence 887666655 7999999999999999999999999999999 58999999999999999 58999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 290 DQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 290 ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
||+++++.+|++++++.|++ +|+.| ..++|+... .....+.++.+|..+-+
T Consensus 166 ed~~~~l~~lr~L~~~svpl-~~~~p-~~~t~~~~~-~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 166 EDRISFLKSLASLSPHSTPI-NFFIP-NPALPLKAP-TLSADEALEIVRLAKEA 216 (279)
T ss_pred HHHHHHHHHHHcCCCCEEee-CCcCC-CCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999 67778 567776532 23456777777776543
No 16
>PLN02389 biotin synthase
Probab=99.95 E-value=9.9e-27 Score=233.83 Aligned_cols=234 Identities=14% Similarity=0.231 Sum_probs=185.8
Q ss_pred cHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEE---eee-CCccCCCCcCCCCCCCC--CC--C-CCCchh
Q 017179 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATI---MIL-GDTCTRGCRFCNVKTSR--AP--P-PPDPDE 161 (376)
Q Consensus 91 ~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~---m~i-~d~C~~~C~FC~v~~~r--~~--~-~l~~eE 161 (376)
.++++..++.. +|..++..|.-.+...+ +++ .++| +.+ +++|+.+|.||+++... +. . .+++||
T Consensus 48 t~~e~l~L~~~-~l~~l~~~A~~vr~~~~-~~~-----~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~Ee 120 (379)
T PLN02389 48 TRDEIKEVYDS-PLLDLLFHGAQVHRHAH-DPR-----EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDD 120 (379)
T ss_pred CHHHHHHHHcC-cHHHHHHHHHHHHHHhc-CCC-----EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHH
Confidence 47788888854 89999999987777544 332 3443 334 89999999999998632 11 1 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
|++.|+++.+.|+++++|++.-+... ++...+++.++++.||+. ++.|.+..+.. +.+.++.|+++|+|.|+|++
T Consensus 121 Il~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~--~l~i~~s~G~l--~~E~l~~LkeAGld~~~~~L 196 (379)
T PLN02389 121 VLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM--GMEVCCTLGML--EKEQAAQLKEAGLTAYNHNL 196 (379)
T ss_pred HHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC--CcEEEECCCCC--CHHHHHHHHHcCCCEEEeee
Confidence 99999999999999999864322211 112367899999999864 35555555544 78999999999999999999
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc--CCcEEEeecCCCCCCC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA--GVDVMTFGQYMRPSKR 318 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel--~vd~v~~~qY~~P~~~ 318 (376)
||++++|++++ .+++|++|+++++.|++ .|+.+++++|+|+|||++|+++++..|+++ +++.+++ +++.| .+
T Consensus 197 eTs~~~y~~i~-~~~s~e~rl~ti~~a~~---~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l-~~l~P-~~ 270 (379)
T PLN02389 197 DTSREYYPNVI-TTRSYDDRLETLEAVRE---AGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPI-NALVA-VK 270 (379)
T ss_pred cCChHHhCCcC-CCCCHHHHHHHHHHHHH---cCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEec-cccee-cC
Confidence 99889999999 47899999999999999 589999999999999999999999999999 5789999 56778 46
Q ss_pred CCCCcccCChHHHHHHHHHHHHH
Q 017179 319 HMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 319 ~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
++|+.....+...+.++.+|..+
T Consensus 271 GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 271 GTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHH
Confidence 88887655556677777777764
No 17
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=5.9e-27 Score=229.71 Aligned_cols=212 Identities=17% Similarity=0.297 Sum_probs=174.8
Q ss_pred EEEEeeeCCc-cCCCCcCCCCCCCC-CCC----CCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017179 129 TATIMILGDT-CTRGCRFCNVKTSR-APP----PPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRK 201 (376)
Q Consensus 129 tat~m~i~d~-C~~~C~FC~v~~~r-~~~----~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~ 201 (376)
..++|.+.++ |+.+|.||+++... .+. .+++|||++.|+++++.| .+++.++||.. ...+ ..++.++++.
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~--~~~i~~~v~~ 126 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD--MEEVVEAIKA 126 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc--HHHHHHHHHH
Confidence 4445555444 59999999999632 221 289999999999999999 57777787754 1122 6789999999
Q ss_pred HHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 202 LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 202 Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
||+... +.+.+..+.. +.+.++.|+++|+|.|+||+||++++|+.|+ .+++|++++++++.+++ .|+.+++++
T Consensus 127 Vk~~~~-le~c~slG~l--~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~-tt~t~edR~~tl~~vk~---~Gi~vcsGg 199 (335)
T COG0502 127 VKEELG-LEVCASLGML--TEEQAEKLADAGVDRYNHNLETSPEFYENII-TTRTYEDRLNTLENVRE---AGIEVCSGG 199 (335)
T ss_pred HHHhcC-cHHhhccCCC--CHHHHHHHHHcChhheecccccCHHHHcccC-CCCCHHHHHHHHHHHHH---cCCccccce
Confidence 997664 7777777766 8999999999999999999999999999999 59999999999999999 589999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
|||+|||.+|+++++..|++++ +|.||| ++|.| ..++|+.+....+-++.++.+|.. +.+..--++|.|
T Consensus 200 I~GlGEs~eDri~~l~~L~~l~~pdsVPI-n~l~P-~~GTPle~~~~~~~~e~lk~IA~~---Ri~~P~~~Ir~s 269 (335)
T COG0502 200 IVGLGETVEDRAELLLELANLPTPDSVPI-NFLNP-IPGTPLENAKPLDPFEFLKTIAVA---RIIMPKSMIRLS 269 (335)
T ss_pred EecCCCCHHHHHHHHHHHHhCCCCCeeee-eeecC-CCCCccccCCCCCHHHHHHHHHHH---HHHCCcceeEcc
Confidence 9999999999999999999999 999999 77788 579999976566778889888875 344333344444
No 18
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.95 E-value=1.5e-26 Score=232.29 Aligned_cols=235 Identities=15% Similarity=0.237 Sum_probs=181.7
Q ss_pred cHHHHHHHHhhcC---hhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCc
Q 017179 91 KYVQIKKKLRELK---LHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDP 159 (376)
Q Consensus 91 ~~~~~~~~l~~~~---L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~~~---~l~~ 159 (376)
+.+++..+|...+ |..+++.|+-.+... + |+ .++|. .++|.|+.+|.||++....+.. .+++
T Consensus 21 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~-G~-----~v~~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~ 93 (371)
T PRK07360 21 SKEDALELLETTEPRRIFEILELADRLRKEQ-V-GD-----TVTYVVNRNINFTNICEGHCGFCAFRRDEGDHGAFWLTI 93 (371)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-c-CC-----eEEEEeccCcccchhhhcCCccCCcccCCCCCCCeeCCH
Confidence 4677777776654 788888887665542 3 33 56663 3499999999999998753222 3899
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC----------CCCCChHHHHHHH
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP----------DFRGNNGCVREVA 229 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p----------d~~g~~e~l~~L~ 229 (376)
|||++.|+++.+.|+++++||||.+++..+ .++++++++.||+.+|++.+.+++| .. ...+.++.|+
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~--~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-~~~e~l~~Lk 170 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLHPAADS--LEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-SYEEVLKALK 170 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCCCCCCc--HHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-CHHHHHHHHH
Confidence 999999999999999999999998776653 6889999999999889999988754 12 1578899999
Q ss_pred HcCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 230 KSGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 230 ~aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
+||+|.++.. .|.. +++++.++|.+.++++|+++++.|++ .|+.+++++|+|+|||++|+++++..|++++++..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~---~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~ 247 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHK---LGLPTTSTMMYGHVETPEHRIDHLLILREIQQETG 247 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999632 4433 47777888667799999999999999 58999999999999999999999999999999764
Q ss_pred Eee-----cCCCCCCCCCCCcccC----ChHHHHHHHHHHHHH
Q 017179 308 TFG-----QYMRPSKRHMPVSEYI----TPEAFERYRALGMEM 341 (376)
Q Consensus 308 ~~~-----qY~~P~~~~~~v~~~v----~pe~~~~l~~~a~~~ 341 (376)
.|. +|+. .++|+.... .+...+.++.+|..+
T Consensus 248 g~~~fIp~~f~~---~~Tpl~~~~~~~~~~~~~~~lr~iAi~R 287 (371)
T PRK07360 248 GITEFVPLPFVH---ENAPLYERGRVKGGAPGLEDLLLYAVSR 287 (371)
T ss_pred CeeEEEeccccC---CCCccccccccCCCCCHHHHHHHHHHHH
Confidence 443 3332 356654431 123455588888764
No 19
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=231.11 Aligned_cols=241 Identities=18% Similarity=0.262 Sum_probs=192.1
Q ss_pred cHHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEe-----eeCCccCCCCcCCCCCCCCCCC---CCCchhH
Q 017179 91 KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIM-----ILGDTCTRGCRFCNVKTSRAPP---PPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m-----~i~d~C~~~C~FC~v~~~r~~~---~l~~eEi 162 (376)
...+...+|...++.++.+.|.-.+...-- +. ++||+ .+||.|.++|.||+|.+..+.. .|++|||
T Consensus 22 ~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~-~~-----~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI 95 (370)
T COG1060 22 TREDALALLSPADLEELEELADKARRRKRV-GD-----GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEI 95 (370)
T ss_pred CHHHHHHHhccCcHHHHHHHHHHHHHhhcc-CC-----cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHH
Confidence 467788888888888888888777633222 22 56665 4699999999999999864222 3999999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-C--------CCChHHHHHHHHcCc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAKSGL 233 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~aGl 233 (376)
.+.++++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|.++++. + ....|.+++|+++|+
T Consensus 96 ~~~~~~~~~~G~~Evli~gG~~p~~~---~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGl 172 (370)
T COG1060 96 LEEVREAVKRGITEVLIVGGEHPELS---LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGL 172 (370)
T ss_pred HHHHHHHHHcCCeEEEEecCcCCCcc---hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCC
Confidence 99999999999999999999998775 56999999999999999999999873 2 113778999999999
Q ss_pred ccccccccc--hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc------
Q 017179 234 NVFAHNIET--VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD------ 305 (376)
Q Consensus 234 d~i~h~lEt--v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd------ 305 (376)
|.++...++ ++++.+.++|++.++++||++++.|++ .||+++++||+|++||.+|+++||..|+++|-.
T Consensus 173 dsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~---lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~ 249 (370)
T COG1060 173 DSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHR---LGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQE 249 (370)
T ss_pred CcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999998764 458888888889999999999999999 589999999999999999999999999999743
Q ss_pred EEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 306 ~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+++ +-++|.....+....-.+.-.+.++.+|.++=|+-
T Consensus 250 fI~--~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~ 287 (370)
T COG1060 250 FIP--LRFRPENGPLPAEVVPEASLEQDLKAIALARIFLD 287 (370)
T ss_pred EEc--ccccCCCCCccccCCCCCCHHHHHHHHHHHHHHcc
Confidence 333 33567322212222223556888899988876544
No 20
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=251.50 Aligned_cols=240 Identities=17% Similarity=0.243 Sum_probs=193.5
Q ss_pred ccHHHHHHHHh--hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCc
Q 017179 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDP 159 (376)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~--~~l~~ 159 (376)
-..++...++. ..+|..+|+.|+-.+..- + |+ +++|++ ++|.|..+|+||+|+...+ . ..+++
T Consensus 487 ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~-~-G~-----~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~ 559 (843)
T PRK09234 487 LTDDEALALFTADGPALEAVCRLADDLRRDV-V-GD-----DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSL 559 (843)
T ss_pred CCHHHHHHHHcCCchhHHHHHHHHHHHHHHh-c-CC-----eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCH
Confidence 35778888886 458999999998777653 3 33 677643 5899999999999997532 2 24899
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-C--------CCChHHHHHHHH
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-F--------RGNNGCVREVAK 230 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-~--------~g~~e~l~~L~~ 230 (376)
|||++.|+++.+.|+++|+|+||.++++. .++|.++++.||+.+|++.|++++|. . ....|.++.|++
T Consensus 560 eeI~~~a~ea~~~G~tev~i~gG~~p~~~---~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 560 DEVADRAWEAWVAGATEVCMQGGIHPELP---GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCcC---HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999887654 68899999999999999999998871 1 125899999999
Q ss_pred cCccccccc-ccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc---
Q 017179 231 SGLNVFAHN-IETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD--- 305 (376)
Q Consensus 231 aGld~i~h~-lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd--- 305 (376)
+|+|.|++. -|.. +++++.++|.+.+.++|+++++.||+ .|+.++++||+|+|||.+|++++|..|+++|++
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~---lGi~~~stmm~G~~Et~edrv~hl~~LreLq~~tgG 713 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHE---VGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGG 713 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCCcccceEEcCCCCHHHHHHHHHHHHhcCcccCC
Confidence 999999985 4544 58888999778899999999999999 589999999999999999999999999999985
Q ss_pred ---EEEeecCCCCCCCCCCCcc--cCChHHHHHHHHHHHHHhhh
Q 017179 306 ---VMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 306 ---~v~~~qY~~P~~~~~~v~~--~v~pe~~~~l~~~a~~~gf~ 344 (376)
+|++ +|+.| ...+++.. ...+...+.++.+|..+=++
T Consensus 714 f~~fIPl-~F~~~-~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~L 755 (843)
T PRK09234 714 FTEFVPL-PFVHQ-NAPLYLAGAARPGPTHRENRAVHALARIML 755 (843)
T ss_pred eeeeeec-cccCC-CCCcccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 7777 66655 23333222 12355678888888876544
No 21
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.94 E-value=4.7e-26 Score=226.26 Aligned_cols=233 Identities=19% Similarity=0.275 Sum_probs=184.1
Q ss_pred HHHHHHHHhh-cChhhhhhhcCCCCcccccCCCCCCccEEEE-----eeeCCccCCCCcCCCCCCCCCC---CCCCchhH
Q 017179 92 YVQIKKKLRE-LKLHTVCEEAKCPNLGECWSGGETGTATATI-----MILGDTCTRGCRFCNVKTSRAP---PPPDPDEP 162 (376)
Q Consensus 92 ~~~~~~~l~~-~~L~tvce~A~cpn~~ec~~~~~~~~~tat~-----m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi 162 (376)
.+++..+|.. .++..+++.|+..+..- + |. +++| +.++++|+.+|.||+++...+. ..+++||+
T Consensus 3 ~~e~~~ll~~~~~~~~L~~~A~~ir~~~-~-g~-----~v~~~~~~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI 75 (343)
T TIGR03551 3 KEEALELFEARGNLFELFRLADELRRDI-V-GD-----TVTYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEI 75 (343)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-c-CC-----eEEEEeeeccccccccccCCccCCCccCCCCCCcccCCHHHH
Confidence 5677778765 68888999998876542 3 33 6666 3358999999999999864321 24899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC-------CCC--ChHHHHHHHHcCc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD-------FRG--NNGCVREVAKSGL 233 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGl 233 (376)
++.++.+.+.|+++|+|+||+.+++. .+++.++++.|++..|++.+.+++|. -.| +.+.++.|++||+
T Consensus 76 ~e~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl 152 (343)
T TIGR03551 76 AERAAEAWKAGATEVCIQGGIHPDLD---GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGL 152 (343)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCCCCC---HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 99999999999999999998766543 67899999999999899998886541 011 5889999999999
Q ss_pred ccccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE-----
Q 017179 234 NVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV----- 306 (376)
Q Consensus 234 d~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~----- 306 (376)
+.+.. +.|+. ++++++|++.+.++++|+++++.|++ .|+.+++++|+|+|||.+|+++++.+|++++++.
T Consensus 153 ~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~---~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~ 229 (343)
T TIGR03551 153 DSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK---LGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTE 229 (343)
T ss_pred ccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH---cCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeE
Confidence 99974 46765 59999999645699999999999999 5899999999999999999999999999999974
Q ss_pred -EEeecCCCCCCCCCCCccc----CChHHHHHHHHHHHHH
Q 017179 307 -MTFGQYMRPSKRHMPVSEY----ITPEAFERYRALGMEM 341 (376)
Q Consensus 307 -v~~~qY~~P~~~~~~v~~~----v~pe~~~~l~~~a~~~ 341 (376)
+|+ +|+.| ++|+... ......+.++.+|..+
T Consensus 230 ~iP~-~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 230 FVPL-PFVHY---NAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred EEec-cccCC---CCccccccCCCCCCCHHHHHHHHHHHH
Confidence 555 44444 5555421 1124677888888764
No 22
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.94 E-value=1.9e-26 Score=228.54 Aligned_cols=235 Identities=17% Similarity=0.309 Sum_probs=185.6
Q ss_pred HHHHHHHHhhcChhhhhhhcCCCCcccccCCCCCCccEEEEee-----eCCccCCCCcCCCCCCCCC-C--CCCCchhHH
Q 017179 92 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-----LGDTCTRGCRFCNVKTSRA-P--PPPDPDEPT 163 (376)
Q Consensus 92 ~~~~~~~l~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-----i~d~C~~~C~FC~v~~~r~-~--~~l~~eEi~ 163 (376)
.+++..+|...++..+++.|+-.+.. .|.|+ +++|.. ++++|+.+|+||++....+ + ..++++|++
T Consensus 5 ~~~~~~ll~~~~~~~l~~~A~~vr~~-~~~g~-----~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~ 78 (340)
T TIGR03699 5 REEALELYKEADLLALGALADEVRRR-RHPGN-----IVTFVVDRNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEIL 78 (340)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHH-hcCCC-----eEEEEeecccccchhhccCCccCCcccCCCCccccCCCHHHHH
Confidence 56777788777899999999877664 23233 666643 5999999999999875432 2 248999999
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC---C----CC--ChHHHHHHHHcCcc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD---F----RG--NNGCVREVAKSGLN 234 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd---~----~g--~~e~l~~L~~aGld 234 (376)
+.++.+++.|+++|+|+||..+++. .+++.++++.|++..|++.+.++++. + .| .++.++.|+++|++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~~~---~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~ 155 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPDLG---LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLD 155 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999998766543 67899999999998887776655542 1 01 37899999999999
Q ss_pred cccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE------
Q 017179 235 VFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV------ 306 (376)
Q Consensus 235 ~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~------ 306 (376)
.++| ++|+. +++++.+.+.+.++++|+++++.+++ .|+.+++++|+|+|||++|+++++..|++++++.
T Consensus 156 ~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~---~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~f 232 (340)
T TIGR03699 156 SIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHK---LGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAF 232 (340)
T ss_pred cCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEE
Confidence 9997 58976 59999998667899999999999999 5899999999999999999999999999999875
Q ss_pred EEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
||+ +| .| .++|+.....+...+.++.+|..+-
T Consensus 233 IP~-~f-~p--~~tpl~~~~~~~~~e~l~~iA~~Rl 264 (340)
T TIGR03699 233 IPW-TF-QP--GNTELGKKRPATSTEYLKVLAISRI 264 (340)
T ss_pred Eee-cc-cC--CCCcccCCCCCCHHHHHHHHHHHHH
Confidence 443 23 35 3666655334455678888887754
No 23
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.94 E-value=6.3e-26 Score=222.27 Aligned_cols=202 Identities=16% Similarity=0.314 Sum_probs=164.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCC-C--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRA-P--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~-~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
..++.++++|+++|.||+++...+ . ..+++|||++.++++.+.|+++|+|+||+.+++. .+++.++++.|++..
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~~ 82 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQEF 82 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHC
Confidence 345668999999999999986432 1 2489999999999999999999999998766533 678999999999998
Q ss_pred CCcEEEEecCC-------CCC--ChHHHHHHHHcCcccccc-cccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 207 PNMLIEALVPD-------FRG--NNGCVREVAKSGLNVFAH-NIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 207 p~i~Ie~l~pd-------~~g--~~e~l~~L~~aGld~i~h-~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
|++.+.++++. -.| +.+.++.|+++|++.+++ ++|+. +++++++++.+.++++|+++++.|++ .|+
T Consensus 83 ~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~---~Gi 159 (309)
T TIGR00423 83 PDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR---LGI 159 (309)
T ss_pred CCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH---cCC
Confidence 88998877651 111 478899999999999985 79976 59999998667899999999999999 589
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEEeecCCCCCCCCCC-Cccc--CChHHHHHHHHHHHHH
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQYMRPSKRHMP-VSEY--ITPEAFERYRALGMEM 341 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd------~v~~~qY~~P~~~~~~-v~~~--v~pe~~~~l~~~a~~~ 341 (376)
.+++++|+|+|||+||+++++.+|++++.+ ++|+ +|. | .++| +... ..+...+.|+.+|..+
T Consensus 160 ~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~-~f~-~--~~t~~l~~~~~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 160 PTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPL-PFQ-P--ENNPYLEGEVRKGASGIDDLKVIAISR 230 (309)
T ss_pred CceeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEee-eec-C--CCChhhccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987 4444 343 3 2444 4332 3455677888888774
No 24
>PRK06256 biotin synthase; Validated
Probab=99.94 E-value=1.7e-25 Score=221.19 Aligned_cols=236 Identities=17% Similarity=0.234 Sum_probs=182.3
Q ss_pred ccHHHHHHHHh--hcChhhhhhhcCCCCcccccCCCCCCccEEEEee-eCCccCCCCcCCCCCCCCC-C----CCCCchh
Q 017179 90 DKYVQIKKKLR--ELKLHTVCEEAKCPNLGECWSGGETGTATATIMI-LGDTCTRGCRFCNVKTSRA-P----PPPDPDE 161 (376)
Q Consensus 90 ~~~~~~~~~l~--~~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~-i~d~C~~~C~FC~v~~~r~-~----~~l~~eE 161 (376)
-.++++..+|+ ..+|..+++.|+-.+.. +.|. .....+++. .+++|+.+|.||+++...+ + ..++++|
T Consensus 20 ~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~--~~g~--~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 95 (336)
T PRK06256 20 LTKEEALALLEIPDDDLLELLAAAYEVRKH--FCGK--KVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEE 95 (336)
T ss_pred CCHHHHHHHHcCChHHHHHHHHHHHHHHHH--hCCC--eEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHH
Confidence 34677888876 44688888888644432 3232 011123333 3999999999999986421 1 1379999
Q ss_pred HHHHHHHHHHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 162 PTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
+++.++.+.+.|+++++|++ |..++..+ .+++.++++.|++. +++.+.+..+.. +++.++.|+++|++.+.|++
T Consensus 96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~--~~~~~e~i~~i~~~-~~i~~~~~~g~l--~~e~l~~LkeaG~~~v~~~l 170 (336)
T PRK06256 96 LIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE-TDLEICACLGLL--TEEQAERLKEAGVDRYNHNL 170 (336)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCCCCchH--HHHHHHHHHHHHhc-CCCcEEecCCcC--CHHHHHHHHHhCCCEEecCC
Confidence 99999999999998887754 44333222 56899999999886 567666655554 78999999999999999999
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM 320 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~ 320 (376)
|+.+++|++|+ +++++++++++++.+++ .|+.+++++|+|+|||++|+.+++.+|++++++.+++ .++.| ..++
T Consensus 171 Ets~~~~~~i~-~~~t~~~~i~~i~~a~~---~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i-~~l~P-~pGT 244 (336)
T PRK06256 171 ETSRSYFPNVV-TTHTYEDRIDTCEMVKA---AGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI-NFLNP-IPGT 244 (336)
T ss_pred ccCHHHHhhcC-CCCCHHHHHHHHHHHHH---cCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee-ccccc-CCCC
Confidence 99779999999 68899999999999999 5899999999999999999999999999999999998 45667 4577
Q ss_pred CCcccCChHHHHHHHHHHHH
Q 017179 321 PVSEYITPEAFERYRALGME 340 (376)
Q Consensus 321 ~v~~~v~pe~~~~l~~~a~~ 340 (376)
|+.....+...+.++.+|..
T Consensus 245 ~l~~~~~~~~~e~l~~ia~~ 264 (336)
T PRK06256 245 PLENHPELTPLECLKTIAIF 264 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 77665445556666666654
No 25
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.94 E-value=8e-26 Score=226.98 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=182.9
Q ss_pred cHHHHHHHHhh---cChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCchhH
Q 017179 91 KYVQIKKKLRE---LKLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~---~~L~tvce~A~cpn~~ec~~~~~~~~~tat-~--m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi 162 (376)
..+++..+|.. ..|..+++.|+-.+..- ||+ +++ + +.++|.|+.+|.||+++...+. ..++++||
T Consensus 37 s~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~-~G~------~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI 109 (371)
T PRK09240 37 SLEDLMALLSPAAEPYLEEMAQKAQRLTRQR-FGN------TISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEI 109 (371)
T ss_pred CHHHHHHHhCCCChhHHHHHHHHHHHHHHHH-cCC------EEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHH
Confidence 46788888873 45888999988776653 343 444 3 3459999999999999864322 24899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
++.++.+.+.|+++|+|+||+.+...+ .+++.++++.|++.+|.+.+++. .. +.+.++.|+++|++.|+||+||
T Consensus 110 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~~~i~~Ik~~~p~i~i~~g--~l--t~e~l~~Lk~aGv~r~~i~lET 183 (371)
T PRK09240 110 EREMAAIKKLGFEHILLLTGEHEAKVG--VDYIRRALPIAREYFSSVSIEVQ--PL--SEEEYAELVELGLDGVTVYQET 183 (371)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCCceeccC--CC--CHHHHHHHHHcCCCEEEEEEec
Confidence 999999999999999999998765433 88999999999998888777653 22 6888999999999999999999
Q ss_pred h-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCc------EEEeecC
Q 017179 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVD------VMTFGQY 312 (376)
Q Consensus 243 v-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~vd------~v~~~qY 312 (376)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|+++++..|++++++ .|+| +.
T Consensus 184 ~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 259 (371)
T PRK09240 184 YNPATYAKHHLRGPKRDFEYRLETPERAGR---AGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISF-PR 259 (371)
T ss_pred CCHHHHHHhCcCCCCCCHHHHHHHHHHHHH---cCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeec-Cc
Confidence 6 699999973 47899999999999999 5885 99999999999999999999999999874 6777 78
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHH
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGM 339 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~ 339 (376)
++|. .+ ++.........+.++.++.
T Consensus 260 l~P~-~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 260 LRPC-TG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred cccC-CC-CCCCCCCCCHHHHHHHHHH
Confidence 8895 45 5544333334444555544
No 26
>PRK07094 biotin synthase; Provisional
Probab=99.94 E-value=4.5e-25 Score=216.88 Aligned_cols=231 Identities=14% Similarity=0.234 Sum_probs=177.0
Q ss_pred HHHHHHHhhcChh---hhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHH
Q 017179 93 VQIKKKLRELKLH---TVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVA 166 (376)
Q Consensus 93 ~~~~~~l~~~~L~---tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a 166 (376)
+++..+|+..+.. .+.+.|+-.+.. .+|+. -....++.++++|+.+|.||.++...+. ..++++|+++.+
T Consensus 4 ~e~~~ll~~~~~~~~~~L~~~A~~~r~~-~~g~~---v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~ 79 (323)
T PRK07094 4 DEILELLSNDDEEELKYLFKAADEVRKK-YVGDE---VHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECA 79 (323)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCE---EEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHH
Confidence 4566666544332 366666644443 23432 1123346679999999999999865322 136999999999
Q ss_pred HHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HH
Q 017179 167 EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EE 245 (376)
Q Consensus 167 ~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~ 245 (376)
+.+.+.|+++|+|+||+.+.+. .+++.++++.|++. +++.+.+..... +++.++.|+++|++.+.+++|+. ++
T Consensus 80 ~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~-~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 80 KKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKE-LDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHcc-CCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999999744332 57899999999886 567776554444 68999999999999999999987 59
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc
Q 017179 246 LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 246 l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~ 324 (376)
+++.|+ ++++++++++.++.+++ .|+.+.+++|+|+ |||.+|+.++++++++++++.+++..| .| ..++|+..
T Consensus 154 ~~~~i~-~~~s~~~~~~~i~~l~~---~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~-~P-~pgTpl~~ 227 (323)
T PRK07094 154 LYAKLH-PGMSFENRIACLKDLKE---LGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPF-IP-HPDTPLKD 227 (323)
T ss_pred HHHHhC-CCCCHHHHHHHHHHHHH---cCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeecc-cc-CCCCCccc
Confidence 999999 58999999999999999 5899999999999 999999999999999999999999655 46 35778766
Q ss_pred cCChHHHHHHHHHHH
Q 017179 325 YITPEAFERYRALGM 339 (376)
Q Consensus 325 ~v~pe~~~~l~~~a~ 339 (376)
...+...+.++.+|.
T Consensus 228 ~~~~~~~~~~~~~a~ 242 (323)
T PRK07094 228 EKGGSLELTLKVLAL 242 (323)
T ss_pred CCCCCHHHHHHHHHH
Confidence 443333333444444
No 27
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.94 E-value=1.5e-25 Score=220.91 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=161.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC---CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-------------ccH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-------------QGS 192 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~---~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-------------~g~ 192 (376)
...|+.++|+|+.+|+||+++..++.. .+++|||++.++.+.+.|+++++||||.+++... ...
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~ 83 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTL 83 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHH
Confidence 456788999999999999999865432 4899999999999999999999999998876530 113
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC---CCCCHHHHHHHHHHHH
Q 017179 193 GHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAK 268 (376)
Q Consensus 193 ~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~---r~~t~e~~L~vl~~ak 268 (376)
+++.++++.|++.. ++.+.+....+ +.+.+..|+++|++ +.+++||+. ++++.++. ++.++++|+++++.|+
T Consensus 84 ~~~~~~~~~i~~e~-~~~~~~~~g~l--t~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 84 EYLRELCELALEET-GLLPHTNPGVM--SRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred HHHHHHHHHHHHhc-CCccccCCCCC--CHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 78899999998653 23333333344 78999999999987 589999875 76665541 3457899999999999
Q ss_pred HhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 269 DYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 269 ~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
+ .|+.++++||+|+|||++|+++++..|++++ ++.+.+..| +| .+++|+.....+...+.++.+|..+=+
T Consensus 160 ~---~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f-~P-~~gTpl~~~~~~s~~e~lr~iAv~Rl~ 234 (322)
T TIGR03550 160 R---LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNF-RA-KPGTPMENHPEPSLEEMLRTVAVARLI 234 (322)
T ss_pred H---cCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCcc-cc-CCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 9 5899999999999999999999999999998 655555444 68 457787655445667788888876533
No 28
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.93 E-value=9.4e-25 Score=237.61 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=183.3
Q ss_pred HHHHHHHH--hhcChhhhhhhcCCCCcccccCCCCCCccEEE-----EeeeCCccCCCCcCCCCCCCCCC-C--CCCchh
Q 017179 92 YVQIKKKL--RELKLHTVCEEAKCPNLGECWSGGETGTATAT-----IMILGDTCTRGCRFCNVKTSRAP-P--PPDPDE 161 (376)
Q Consensus 92 ~~~~~~~l--~~~~L~tvce~A~cpn~~ec~~~~~~~~~tat-----~m~i~d~C~~~C~FC~v~~~r~~-~--~l~~eE 161 (376)
.++...++ ...+|..+++.|+-.+..- +|+-..+ .++| |+.++|.|..+|.||+|.+..+. . .+++||
T Consensus 29 ~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~-~G~~~~~-~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eE 106 (843)
T PRK09234 29 VDEAAVLLTARGDDLADLCASAARVRDAG-LGAAGRP-GVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDE 106 (843)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH-cCCcccC-ceEEEEeEEEecCCCCCCCCCCcCCCccCCCCCccccCCHHH
Confidence 45566665 3457888888887666542 3320001 2454 45579999999999999875322 2 389999
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCC-------------cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHH
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLA-------------DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~-------------d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
|++.++++++.|+++++||||++++.. +.-.+++.++++.|++..+ +.+++..+.+ +.+.++.|
T Consensus 107 Il~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~~G~l--s~~E~~~L 183 (843)
T PRK09234 107 VLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLNPGVM--SWSELARL 183 (843)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceeeeCCC--CHHHHHHH
Confidence 999999999999999999999987642 1125899999999998642 3334444445 67889999
Q ss_pred HHcCcccccccccch-HHHHHh------hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETV-EELQSA------VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 229 ~~aGld~i~h~lEtv-~~l~~~------vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
+++|++ +++++||+ +++|+. ++ ++..+++||++++.|++ .|+.++|+||+|+|||++|++++|..||+
T Consensus 184 k~~g~s-~gl~lEt~~~~l~~~~g~~h~~~-P~K~~~~RL~ti~~A~~---lGi~~tsG~L~GiGEt~edRve~L~~LR~ 258 (843)
T PRK09234 184 KPVAPS-MGMMLETTSRRLFEEKGGPHYGS-PDKDPAVRLRVLEDAGR---LSVPFTTGILIGIGETLAERAESLFAIRK 258 (843)
T ss_pred HHhcCc-CCCCHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHH---cCCCccceEEEECCCCHHHHHHHHHHHHH
Confidence 999997 88999984 688754 34 46789999999999999 58999999999999999999999999999
Q ss_pred cC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 302 AG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 302 l~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
++ ++.+.+ |.|+| +.++++.....+...+.++.+|..+=++
T Consensus 259 Lq~~~g~~~evi~-~~F~p-~~gT~l~~~~~~s~~e~Lr~iAvaRliL 304 (843)
T PRK09234 259 LHREYGHIQEVIV-QNFRA-KPDTAMAGVPDAGLEELLATIAVARLVL 304 (843)
T ss_pred hhHhhCCCcEEee-ccccc-CCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 95 666777 45567 5678877665677788888888875443
No 29
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.92 E-value=3.8e-24 Score=214.48 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=172.4
Q ss_pred cHHHHHHHHhhc---ChhhhhhhcCCCCcccccCCCCCCccEEE-E--eeeCCccCCCCcCCCCCCCCCC--CCCCchhH
Q 017179 91 KYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATAT-I--MILGDTCTRGCRFCNVKTSRAP--PPPDPDEP 162 (376)
Q Consensus 91 ~~~~~~~~l~~~---~L~tvce~A~cpn~~ec~~~~~~~~~tat-~--m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi 162 (376)
..++...+|... .|..+++.|+-.+.. .+|+ +++ + +.++|.|+.+|.||+++..... ..+++||+
T Consensus 36 s~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~-~~G~------~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI 108 (366)
T TIGR02351 36 SLEDFLALLSPAAEPYLEEMAQKAKKLTRK-RFGN------TISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEI 108 (366)
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHHHHH-HcCC------EEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHH
Confidence 367777787643 488888888865553 3443 344 3 3359999999999999864222 23899999
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
.+.++.+.+.|+++|+|+||..+...+ .+++.++++.|++.+|.+.|++.. + +.+.++.|+++|++.+.+++||
T Consensus 109 ~~~a~~~~~~Gv~~i~lvgGe~p~~~~--~e~l~eii~~Ik~~~p~i~Iei~~--l--t~e~~~~Lk~aGv~r~~i~lET 182 (366)
T TIGR02351 109 EREIEAIKKSGFKEILLVTGESEKAAG--VEYIAEAIKLAREYFSSLAIEVQP--L--NEEEYKKLVEAGLDGVTVYQET 182 (366)
T ss_pred HHHHHHHHhCCCCEEEEeeCCCCCCCC--HHHHHHHHHHHHHhCCcccccccc--C--CHHHHHHHHHcCCCEEEEEeec
Confidence 999999999999999999987765544 789999999999988888777542 3 7889999999999999999999
Q ss_pred h-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCC------cEEEeecC
Q 017179 243 V-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGV------DVMTFGQY 312 (376)
Q Consensus 243 v-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~v------d~v~~~qY 312 (376)
. +++|+.|++ ++++|+++++.++.|++ .|+. +++++|+|+||+.+|.+++...|+++++ ..|+| +.
T Consensus 183 ~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~---aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~-~~ 258 (366)
T TIGR02351 183 YNEKKYKKHHLAGKKKDFRYRLNTPERAAK---AGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISV-PR 258 (366)
T ss_pred CCHHHHHhcCcCCCCCCHHHHHHHHHHHHH---cCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccc-cc
Confidence 8 599999983 57899999999999999 5887 8999999999999999999999888877 56777 77
Q ss_pred CCCCC
Q 017179 313 MRPSK 317 (376)
Q Consensus 313 ~~P~~ 317 (376)
++|..
T Consensus 259 l~P~~ 263 (366)
T TIGR02351 259 LRPCT 263 (366)
T ss_pred cccCC
Confidence 88863
No 30
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=216.17 Aligned_cols=213 Identities=18% Similarity=0.239 Sum_probs=170.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
..+|+.++.||+++|+||+++..+++. +.++++|+++++.+.+.|+++|+|++++-..+... ...|.+++++|.+...
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~-~~~l~~Ll~~l~~~~~ 232 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ-STDFAGLIQMLLDETT 232 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC-cccHHHHHHHHhcCCC
Confidence 567899999999999999999876554 58999999999999999999999999875544321 2358889988865432
Q ss_pred CcEEEEe--cCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 208 NMLIEAL--VPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 208 ~i~Ie~l--~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
..+|... .|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.+++|
T Consensus 233 ~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~-R~~t~~~~~~~i~~lr~~~p~-i~i~td~I 309 (449)
T PRK14332 233 IERIRFTSPHPKDF-PDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMK-RSYSKEEFLDVVKEIRNIVPD-VGITTDII 309 (449)
T ss_pred cceEEEECCCcccC-CHHHHHHHHhCCCccceEEECCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHhCCC-CEEEEEEE
Confidence 2345544 34332 688899999988 67777889964 69999999 899999999999999998775 88999999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|| |||++|+.++++++++++++.++++.|. +|+.... ++.+.++.++.++|.+++.++.+.+
T Consensus 310 vGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 379 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQ 379 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999996 5532221 1333344567888888888877765
No 31
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2.2e-23 Score=213.94 Aligned_cols=214 Identities=16% Similarity=0.250 Sum_probs=172.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-ccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g~~~~~elvr~Ik~~~ 206 (376)
+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+.| .+...|.++++.|.+..
T Consensus 149 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~ 228 (445)
T PRK14340 149 ISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAA 228 (445)
T ss_pred cEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcC
Confidence 578899999999999999999776544 5899999999999999999999999998443332 11235889999987655
Q ss_pred CCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 207 PNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 207 p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
+..+|.. ..|+.. +++.++.|+++ |...+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+.+++
T Consensus 229 ~~~rir~~~~~p~~l-~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~pg-i~i~td~ 305 (445)
T PRK14340 229 PEMRIRFTTSHPKDI-SESLVRTIAARPNICNHIHLPVQSGSSRMLRRMN-RGHTIEEYLEKIALIRSAIPG-VTLSTDL 305 (445)
T ss_pred CCcEEEEccCChhhc-CHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEeccE
Confidence 5555554 455433 68899999886 67888888996 569999999 899999999999999998775 9999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+|| |||++++.++++++++++++.++++.|. +|+.... ++...+..++.++|.+++.++...+
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~ 376 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAEL 376 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998885 4532211 1222334677888888888877655
No 32
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=4e-23 Score=214.73 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=170.9
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-c-HHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-SGHFAQTVRKLK 203 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g-~~~~~elvr~Ik 203 (376)
.+.+|+.+++||+++|+||+++..++.. ..+++++++.++.+.+.|+++|.|+|++-..+. |. + ...|.++++.|.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~ 290 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIR 290 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHH
Confidence 3789999999999999999999776554 589999999999999999999999998743331 10 1 134788888887
Q ss_pred hhC-CCcEEEEecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 204 ELK-PNMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 204 ~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+.. +.+++..+.|+.. +++.++.++++| +..+..++|+ ++++++.|+ |+++.++++++++.+++.+|+ +.+.+
T Consensus 291 ~~~i~~ir~~s~~P~~i-~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~p~-i~i~t 367 (509)
T PRK14327 291 KIDIPRVRFTTSHPRDF-DDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMA-RKYTRESYLELVRKIKEAIPN-VALTT 367 (509)
T ss_pred hCCCceEEEeecCcccC-CHHHHHHHHhcCCccceEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-cEEee
Confidence 642 3344545556433 788999999998 5567888996 469999999 899999999999999998876 88999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCC----CcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+||+|| |||++|+.++++++++++++.++++.|. +|+..... |...++.+++++|.+++.++...+
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~ 439 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKK 439 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998885 45322222 233334568899999888876544
No 33
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=5.6e-23 Score=209.52 Aligned_cols=213 Identities=18% Similarity=0.248 Sum_probs=169.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c----ccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D----QGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d----~g~~~~~elvr~I 202 (376)
+..|+.+++||+++|+||+++..+++. +.++++|+++++.+.+.|+++|+|+|.+-..+. | .+...|.++++.|
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l 206 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKL 206 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHH
Confidence 788999999999999999999876543 589999999999999999999999998743321 1 0123488899888
Q ss_pred HhhCCCc-EEEE--ecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce
Q 017179 203 KELKPNM-LIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 276 (376)
Q Consensus 203 k~~~p~i-~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~ 276 (376)
.+. +++ ++.. +.|+.. +++.++.++++ |+..+..++|+ ++++++.|+ |+++.+++++.++.+++..|+ +.
T Consensus 207 ~~~-~g~~~ir~~s~~p~~~-~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~~~~~~~v~~lr~~~p~-i~ 282 (420)
T PRK14339 207 SEI-EGLERIRFTSPHPLHM-DDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMK-RGYTKEWFLNRAEKLRALVPE-VS 282 (420)
T ss_pred hcC-CCccEEEECCCChhhc-CHHHHHHHHcCCCccCceEeCCccCCHHHHHhcc-CCCCHHHHHHHHHHHHHHCCC-CE
Confidence 753 333 3443 344432 68899999887 46778888996 569999999 899999999999999998775 89
Q ss_pred EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 277 TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 277 tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+++|+|| |||++|+.++++++++++++.++++.|. +|+.... +|...++.++.++|++++.++.+.+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 357 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEI 357 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998875 4432222 2333445677888888888877655
No 34
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.91 E-value=1.3e-22 Score=208.68 Aligned_cols=230 Identities=12% Similarity=0.218 Sum_probs=179.5
Q ss_pred CccHHHHHHHHhhc---ChhhhhhhcCCCCcccccCCCCCCccEEEEe--eeCCccCCCCcCCCCCCCCC-CC--CCCch
Q 017179 89 GDKYVQIKKKLREL---KLHTVCEEAKCPNLGECWSGGETGTATATIM--ILGDTCTRGCRFCNVKTSRA-PP--PPDPD 160 (376)
Q Consensus 89 ~~~~~~~~~~l~~~---~L~tvce~A~cpn~~ec~~~~~~~~~tat~m--~i~d~C~~~C~FC~v~~~r~-~~--~l~~e 160 (376)
+-..+++..+|... .|..+.+.|+-.+.. .||+. ...|. .++|.|.++|.||+|+.... .. .+++|
T Consensus 45 ~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~-~~Gn~-----I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~E 118 (469)
T PRK09613 45 GLSPEEAAVLLNVEDPELLEEIFEAAREIKEK-IYGNR-----IVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQE 118 (469)
T ss_pred CCCHHHHHHHHcCCChhHHHHHHHHHHHHHHH-HcCCE-----EEEEEeccccCCCCCCCccCCCccCCCCCCceECCHH
Confidence 35578888888754 378888888766553 34543 44443 46999999999999997543 22 38999
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---Cc-EEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NM-LIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p---~i-~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
||++.++++.+.|+++++|+||..+ ++.+.+++.++|+.|++..+ .+ .|.+-.+.+ +.+.++.|+++|++.+
T Consensus 119 EI~~ea~~~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l--t~eey~~LkeaGv~~~ 194 (469)
T PRK09613 119 EIREEVKALEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT--TVENYKKLKEAGIGTY 194 (469)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecC--CHHHHHHHHHcCCCEE
Confidence 9999999999999999999998763 22348999999999997532 11 233333444 7899999999999999
Q ss_pred cccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHc------CCcE
Q 017179 237 AHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAA------GVDV 306 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel------~vd~ 306 (376)
.+++||.+ ++|++++| ++++|++++++++.|++ .|+. |++++|+|+||+.+|++.++..++.+ +++.
T Consensus 195 ~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~---aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~t 271 (469)
T PRK09613 195 QLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME---AGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHT 271 (469)
T ss_pred EeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH---cCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99999975 99999974 37899999999999999 6897 99999999999999999999999888 5677
Q ss_pred EEeecCCCCCCCCCCCccc---CChHHHHH
Q 017179 307 MTFGQYMRPSKRHMPVSEY---ITPEAFER 333 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~---v~pe~~~~ 333 (376)
|+| +.++| ..++|+... +.++.+..
T Consensus 272 Isv-prl~P-~~Gtpl~~~~~~vsd~e~lr 299 (469)
T PRK09613 272 ISV-PRLRP-ADGSDLENFPYLVSDEDFKK 299 (469)
T ss_pred ccc-cceec-CCCCCcccCCCCCCHHHHHH
Confidence 888 78899 467777433 44444433
No 35
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=1.4e-22 Score=206.52 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=168.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..++.. +.++++|+++++.+.+.|+++|+|+|++-..+. | .+...|.++++.|++.
T Consensus 124 ~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 203 (418)
T PRK14336 124 VSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDI 203 (418)
T ss_pred eEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhc
Confidence 778999999999999999999876543 589999999999999999999999998733221 1 1124588999998764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....+|.. ..|+.. +++.++.+++.+ +..+..++|+ ++++++.|+ |+++.++++++++.+++..|+ +.+.++
T Consensus 204 ~~~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~pg-i~i~~d 280 (418)
T PRK14336 204 PGLLRIRFLTSHPKDI-SQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMR-RGYTNQQYRELVERLKTAMPD-ISLQTD 280 (418)
T ss_pred CCccEEEEeccChhhc-CHHHHHHHHhcCccCCceecCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhhCCC-CEEEEE
Confidence 32235554 446433 688888888753 6777778996 569999999 899999999999999998775 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. +|+.... +|+..++.++.+.|++++.+....+
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 352 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKA 352 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 4431111 1333344567888888888776655
No 36
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=209.35 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=170.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-c-----HHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-G-----SGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g-----~~~~~elvr 200 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++++-+++. |. + ...|.++++
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~ 247 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLE 247 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHH
Confidence 677999999999999999998766543 589999999999999999999999998754432 21 1 235889999
Q ss_pred HHHhhCCCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc
Q 017179 201 KLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 201 ~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
.|.+..+..+|.. ..|+.. +++.++.|+++ |+..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +
T Consensus 248 ~l~~~~~~~~ir~~~~~p~~l-~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~-R~~t~~~~~~~i~~ir~~~~~-~ 324 (467)
T PRK14329 248 MVAEAVPDMRIRFSTSHPKDM-TDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMN-RKYTREWYLDRIDAIRRIIPD-C 324 (467)
T ss_pred HHHhcCCCcEEEEecCCcccC-CHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-C
Confidence 9887655555554 445433 68899999887 788888899965 59999999 899999999999999998765 8
Q ss_pred eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC-----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 276 LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM-----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 276 ~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~-----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... .|...+..++..+|++++.++...+
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 401 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLER 401 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999 9999999999999999999999998886 4532211 1222333456788888888776655
No 37
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=1.5e-22 Score=208.34 Aligned_cols=215 Identities=15% Similarity=0.245 Sum_probs=170.4
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC--c--ccHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--D--QGSGHFAQTVRKL 202 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~--d--~g~~~~~elvr~I 202 (376)
.+..|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-..+. | +....|.+++++|
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l 230 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHI 230 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHH
Confidence 3678899999999999999999766543 588999999999999999999999998744331 1 1123588899888
Q ss_pred Hhh---CCCc-EEEE--ecCCCCCChHHHHHHHH--cCcccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 203 KEL---KPNM-LIEA--LVPDFRGNNGCVREVAK--SGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 203 k~~---~p~i-~Ie~--l~pd~~g~~e~l~~L~~--aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
.+. .+++ ++.. +.|+.. +++.++.|++ +|+..+..++|+ ++++++.|+ |+++.++++++++.+++..|+
T Consensus 231 ~~~~~~~~~i~~ir~~s~~p~~i-~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~-R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 231 VRRAEVTDQIRWIRFMSSHPKDL-SDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMN-RSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHhhcccCCceEEEEeecCcccC-CHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 532 2222 5544 445533 6888999988 478888889996 569999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... .|...++.++.++|++++.++...+
T Consensus 309 -i~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~ 385 (455)
T PRK14335 309 -VALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKK 385 (455)
T ss_pred -CEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999886 5532222 2334445678899999988877665
No 38
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.90 E-value=1.9e-22 Score=199.62 Aligned_cols=205 Identities=16% Similarity=0.225 Sum_probs=146.7
Q ss_pred EEEE-----eeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC---------cccHH
Q 017179 129 TATI-----MILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA---------DQGSG 193 (376)
Q Consensus 129 tat~-----m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~---------d~g~~ 193 (376)
.+|| +.++|+|+.+|+||+++..++. ..+++||+++.++++.+.|+++|+||||+.+++. +.|..
T Consensus 7 ~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~ 86 (336)
T PRK06245 7 IVTYSRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYS 86 (336)
T ss_pred eeEeecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHH
Confidence 5565 4579999999999999986533 3599999999999999999999999999886553 11234
Q ss_pred HHHHHHHHHHhhCC--CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhh---cCCCCCHHHHHHHHHHH
Q 017179 194 HFAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV---RDHRANFKQSLDVLMMA 267 (376)
Q Consensus 194 ~~~elvr~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~v---r~r~~t~e~~L~vl~~a 267 (376)
.+.+.+++|.+... ++... +.|... +++.++.|+++|+. +.+++|+.. .+++.| + ++.++++++++++.+
T Consensus 87 ~~~~~i~~i~~~~~~~g~~~~-~~~~~l-t~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~-~~~~~~~~l~~i~~a 162 (336)
T PRK06245 87 SILEYLYDLCELALEEGLLPH-TNAGIL-TREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGS-PGKDPELRLETIENA 162 (336)
T ss_pred HHHHHHHHHHHHHhhcCCCcc-ccCCCC-CHHHHHHHHHhCCC-CCCCccccchhhHHhhccCC-CCCCHHHHHHHHHHH
Confidence 45556655544211 11111 222221 68889999998865 677889764 777666 4 467899999999999
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
++ .|+.++++||+|+|||++|++++|..+++++ ++.+.+.. +.|. .++++.....+...+.++.+|..+-
T Consensus 163 ~~---~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~-f~P~-~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 163 GK---LKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQN-FSPK-PGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred HH---cCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCC-CcCC-CCCCcccCCCcCHHHHHHHHHHHHH
Confidence 98 5799999999999999999999999999997 45566644 4573 4555544333444455555555433
No 39
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.90 E-value=2.4e-22 Score=206.29 Aligned_cols=214 Identities=18% Similarity=0.282 Sum_probs=170.3
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cc--ccHHHHHHHHHHHH
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-AD--QGSGHFAQTVRKLK 203 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d--~g~~~~~elvr~Ik 203 (376)
.+..|+.+++||+++|+||+++..+++. +.+++++++.++.+.+.|+++|+|++.+-..+ .| ++...|.++++.|.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~ 226 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVA 226 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHH
Confidence 3677899999999999999998766544 58999999999999999999999999864322 11 11135888998887
Q ss_pred hhCCCc-EEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELKPNM-LIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~p~i-~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+. +++ +|.. +.|+.. +++.++.+++. |+..+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+
T Consensus 227 ~~-~g~~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~t~e~~~~~v~~lr~~~~~-i~i 302 (446)
T PRK14337 227 AL-PGLERLRFTTPHPKDI-APEVIEAFGELPNLCPRLHLPLQSGSDRILKAMG-RKYDMARYLDIVTDLRAARPD-IAL 302 (446)
T ss_pred hc-CCCcEEEEccCCcccC-CHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CeE
Confidence 64 333 4554 445433 68889989884 477788889965 69999999 899999999999999998765 899
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCC----CcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMP----VSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~----v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+++|+|| |||++|+.++++++++++++.++++.|. +|+..... |...++.++.++|++++.++...+
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~ 376 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERW 376 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999998886 66433322 444455678899999988877665
No 40
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.90 E-value=2.6e-22 Score=203.95 Aligned_cols=214 Identities=16% Similarity=0.259 Sum_probs=167.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcc--cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ--GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~--g~~~~~elvr~Ik~~ 205 (376)
...|+.+++||+.+|+||+++..++.. ..++++|+++++.+.+.|+++|+|++++-..+.+. +...+.++++.|++.
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~ 217 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQI 217 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcC
Confidence 566788999999999999998765443 58999999999999999999999999864333210 124588899988764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.+++++.++.+++..+ |+.+.++
T Consensus 218 ~~~~~ir~~~~~p~~~-~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~-R~~~~~~~~~~v~~l~~~~~-gi~i~~~ 294 (414)
T TIGR01579 218 PGIKRIRLSSIDPEDI-DEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR-RKYTRDDFLKLVNKLRSVRP-DYAFGTD 294 (414)
T ss_pred CCCcEEEEeCCChhhC-CHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC-CCCCHHHHHHHHHHHHHhCC-CCeeeee
Confidence 32223443 445432 788899998887 67788889975 59999999 89999999999999999665 5999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||+|++.++++++++++++.++++.|. .|+.... ++...+..++.++|++++.++...+
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 365 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEF 365 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998775 3432211 1333344567888888888877755
No 41
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.90 E-value=4.4e-22 Score=192.81 Aligned_cols=198 Identities=16% Similarity=0.269 Sum_probs=151.0
Q ss_pred eee-CCccCCCCcCCCCCCCCC---C--CCCCchhHHHHHHHHHHCCCcEEEEE-eeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 133 MIL-GDTCTRGCRFCNVKTSRA---P--PPPDPDEPTNVAEAIASWGLDYVVIT-SVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 133 m~i-~d~C~~~C~FC~v~~~r~---~--~~l~~eEi~~~a~al~~~G~~eIvLT-sg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
+.+ |++|+.+|.||.++.... . ..++++|+++.++.+.+.|++.++|+ +|..++..+ ...+++.+..+++.
T Consensus 32 ~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~--~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 32 MNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDRE--FMEYVEAMVQIVEE 109 (296)
T ss_pred EecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHH--HHHHHHHHHHHHHh
Confidence 444 999999999999976421 1 13789999999999999999988664 443322111 12233333333232
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
. ++.+.+..+.. ++|.++.|+++|++.+.+++|+.++++++++ ++++++++++.++.+++ .|+.+.+++|+|+
T Consensus 110 ~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s~~~~~~ai~~l~~---~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 110 M-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHTYDDRVDTLENAKK---AGLKVCSGGIFGL 182 (296)
T ss_pred C-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCCHHHHHHHHHHHHH---cCCEEEEeEEEeC
Confidence 2 45554433333 7899999999999999999997679999999 68999999999999999 5899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
|||.+|+.++++++++++++.+++. .+.| ..++++..+..++..+.++.++..+
T Consensus 183 ~et~~d~~~~~~~l~~l~~~~i~l~-~l~p-~~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 183 GETVEDRIGLALALANLPPESVPIN-FLVK-IKGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEee-eeEE-cCCCccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999884 4467 3578887766666677777777654
No 42
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=5e-22 Score=206.65 Aligned_cols=212 Identities=19% Similarity=0.298 Sum_probs=165.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cc-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-AD-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d-~g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..++.. ..++++|+++++.+.+.|+++|+|++.+-..+ .| .+...|.++++.+.+.
T Consensus 157 ~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i 236 (502)
T PRK14326 157 YAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEI 236 (502)
T ss_pred ceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhc
Confidence 567899999999999999999876544 58999999999999999999999999864322 11 1134688888888764
Q ss_pred CC--CcEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KP--NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.+ .+++..+.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.++
T Consensus 237 ~~l~~ir~~~~~p~~~-~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~-R~~t~~~~~~~v~~lr~~~~~-i~i~~~ 313 (502)
T PRK14326 237 DGLERVRFTSPHPAEF-TDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMR-RSYRSERFLGILEKVRAAMPD-AAITTD 313 (502)
T ss_pred CCccEEEEeccChhhC-CHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 32 233333445432 788999999987 67778889964 69999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc-------cCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-------YITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~-------~v~pe~~~~l~~~a~~~gf~~ 345 (376)
||+|| |||++|+.++++++++++++.+.++.|. | ..++++.+ .+..+++++|.+++.++...+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~s-p-~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~ 384 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREARFSSAFTFQYS-K-RPGTPAAEMEGQLPKAVVQERYERLVALQERISLEE 384 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeec-C-CCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999998888774 4 23444332 233457777777776655543
No 43
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=4.9e-22 Score=203.48 Aligned_cols=215 Identities=13% Similarity=0.248 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~g~~~~~elvr~Ik~~~ 206 (376)
+..|+.+++||+.+|+||+++..+++. ..++++++++++.+.+.|+++|+|++.+-..+. |.+...|.++++.|.+..
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~ 225 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID 225 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC
Confidence 677889999999999999999766543 589999999999999999999999998643221 111124788888887653
Q ss_pred C--CcEEEEecCCCCCChHHHHHHHHc--Ccccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 207 P--NMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 207 p--~i~Ie~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
+ .+.+....|... +++.++.++++ |+..+..++|+ ++++++.|+ |+++.++++++++.+++..| |+.+.+++
T Consensus 226 g~~~i~~~~~~p~~l-~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~-R~~t~~~~~~~v~~lr~~~~-gi~i~~d~ 302 (437)
T PRK14331 226 GVERIRFTTGHPRDL-DEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMD-RGYTKEEYLEKIELLKEYIP-DITFSTDI 302 (437)
T ss_pred CccEEEEeccCcccC-CHHHHHHHHcCCccCCceecccccCChHHHHHcC-CCCCHHHHHHHHHHHHHhCC-CCEEecCE
Confidence 2 233334445432 78999999988 47888888996 569999999 89999999999999999776 49999999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCc----ccCChHHHHHHHHHHHHHhhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVS----EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~----~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|+|| |||++|+.++++++++++++.++++.|. +|+.....+. ..++.++...+.+++.++.+.+.
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 373 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKA 373 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998775 4432221222 22334567888888888777653
No 44
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.89 E-value=7.7e-22 Score=202.11 Aligned_cols=214 Identities=16% Similarity=0.210 Sum_probs=166.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-C-c--ccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-A-D--QGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~-d--~g~~~~~elvr~Ik 203 (376)
+..|+.+++||+++|+||+++..+++. ..++++++++++.+.+.|+++|+|+|++-..+ . | ++...|.++++.|.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~ 224 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELS 224 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHH
Confidence 677899999999999999998766543 58999999999999999999999999864333 1 1 12235889999987
Q ss_pred hhCCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 204 ELKPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 204 ~~~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
+.....++.. +.|+.. +++.++.|+++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|+ +.+.
T Consensus 225 ~~~~~~~ir~~~~~p~~l-~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~-R~~t~~~~~~~v~~ir~~~~~-i~i~ 301 (438)
T TIGR01574 225 TIDGIERIRFTSSHPLDF-DDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMK-RGYTREWYLNLVRKLRAACPN-VSIS 301 (438)
T ss_pred hcCCceEEEEecCCcccC-CHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CeEe
Confidence 6432224443 345432 788999999998 78888889965 69999999 899999999999999997764 8899
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+++|+|| |||++|+.++++++++++++.+++++|. +|+.....+...+. .++...|++++.++...+
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 374 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKK 374 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 44322222222232 356777888877766554
No 45
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=6.2e-22 Score=202.81 Aligned_cols=214 Identities=16% Similarity=0.253 Sum_probs=166.2
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+++|+||+++..+++. ..+++++++.++.+.+.|+++|+|+|++-.++. |. +...|.++++.|.+.
T Consensus 147 ~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 226 (439)
T PRK14328 147 VKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEI 226 (439)
T ss_pred cEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhc
Confidence 667899999999999999999766543 589999999999999999999999998743321 10 113478888888764
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.|+++| +..+..++|+ ++++++.|+ |+++.+++++.++.+++.+|. +.+.++
T Consensus 227 ~~~~~ir~~~~~P~~i-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 303 (439)
T PRK14328 227 DGLERIRFMTSHPKDL-SDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN-RHYTREYYLELVEKIKSNIPD-VAITTD 303 (439)
T ss_pred CCCcEEEEecCChhhc-CHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 22224553 446433 788999999886 7778888996 469999999 899999999999999998765 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccC----ChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYI----TPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v----~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++|+.++++++++++++.++++.|. +|+.....+...+ ..++++.|++++.++...+
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 374 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEK 374 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 4432222222233 3456788888888776654
No 46
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.89 E-value=1.4e-21 Score=200.31 Aligned_cols=211 Identities=14% Similarity=0.271 Sum_probs=163.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc--------c---HHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ--------G---SGHF 195 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~--------g---~~~~ 195 (376)
...|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|+|.|-..+. |. | ..++
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~ 218 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRM 218 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHH
Confidence 667889999999999999999766543 589999999999999999999999998632110 10 1 2578
Q ss_pred HHHHHHHHhhCCCcEEE--EecCCCCCChHHHHHHHHcCcc--cccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 017179 196 AQTVRKLKELKPNMLIE--ALVPDFRGNNGCVREVAKSGLN--VFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 196 ~elvr~Ik~~~p~i~Ie--~l~pd~~g~~e~l~~L~~aGld--~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~ 270 (376)
.++++.|.+. ++++. .+.|... +++.++.+++ |.- .+..++|+ ++++++.|+ ++++++++++.++.+++.
T Consensus 219 ~~Ll~~l~~~--~~~~r~~~~~p~~~-~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~-r~~~~~~~~~~i~~lr~~ 293 (440)
T PRK14862 219 TDLCEALGEL--GAWVRLHYVYPYPH-VDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMK-RPASVEKTLERIKKWREI 293 (440)
T ss_pred HHHHHHHHhc--CCEEEEecCCCCcC-CHHHHHHHhc-CCCccccccccccCCHHHHHhcC-CCCCHHHHHHHHHHHHHH
Confidence 9999999876 34444 3555432 5688888887 542 34557895 469999999 899999999999999998
Q ss_pred CCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhh
Q 017179 271 VPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFR 344 (376)
Q Consensus 271 ~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~ 344 (376)
.|. +.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.....+...++ .+++++|.+++.++...
T Consensus 294 ~~~-i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~ 372 (440)
T PRK14862 294 CPD-LTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAA 372 (440)
T ss_pred CCC-ceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 765 88999999999 9999999999999999999999998886 45332221233344 45678888888887766
Q ss_pred h
Q 017179 345 Y 345 (376)
Q Consensus 345 ~ 345 (376)
+
T Consensus 373 ~ 373 (440)
T PRK14862 373 R 373 (440)
T ss_pred H
Confidence 5
No 47
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=1.5e-21 Score=199.67 Aligned_cols=212 Identities=14% Similarity=0.227 Sum_probs=164.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~-g~~~~~elvr~Ik~~ 205 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++++-..+. |. +...+.++++.+.+.
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~ 219 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKI 219 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhc
Confidence 667888999999999999998766543 589999999999999999999999998643321 10 123578888877654
Q ss_pred CCC--cEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.+. +++....|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.+++.++++.+++..|+ +.+.++
T Consensus 220 ~~~~~~~~~~~~p~~~-~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~-R~~~~~~~~~~i~~lr~~~~~-i~i~~d 296 (434)
T PRK14330 220 EGIERIWFLTSYPTDF-SDELIEVIANSPKVAKSIHLPVQSGSNRILKLMN-RRYTREEYLELIEKIRSKVPD-ASISSD 296 (434)
T ss_pred CCceEEEEecCChhhc-CHHHHHHHhcCCcccCceecCcCCCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 322 23333345322 688899998887 56677889974 69999999 899999999999999998765 899999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc----ccCC----hHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS----EYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~----~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. | ..+++.. +.++ .++..+|.+++.++...+
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~s-p-~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 368 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYS-P-REGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKL 368 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeecc-C-CCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 3 2344432 2233 356778888888877655
No 48
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=2.4e-21 Score=199.65 Aligned_cols=212 Identities=16% Similarity=0.282 Sum_probs=163.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
...|+.+++||+.+|+||.++..++.. ..++++++++++.+.+.|+++|+|+|++-..+. | .+...|.++++.|++.
T Consensus 155 ~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~ 234 (459)
T PRK14338 155 VTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI 234 (459)
T ss_pred eEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc
Confidence 678899999999999999999766543 589999999999999999999999997633221 1 0134689999999875
Q ss_pred CCCc-EEE--EecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 206 KPNM-LIE--ALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 206 ~p~i-~Ie--~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+++ .|. ...|+.. +++.++.|++. |+..+..++|+. +++++.|+ |+++.+++++.++.+++.+|+ +.+.+
T Consensus 235 -~gi~~ir~~~~~p~~i-~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~pg-i~i~~ 310 (459)
T PRK14338 235 -PGLERLRFLTSHPAWM-TDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR-RGYTVARYRELIARIREAIPD-VSLTT 310 (459)
T ss_pred -CCcceEEEEecChhhc-CHHHHHHHhcccccccceecCcccCCHHHHHhcc-CCCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 333 444 3445543 67888988885 477788889965 59999999 899999999999999998764 89999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCccc----CCh----HHHHHHHHHHHHHhhh
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEY----ITP----EAFERYRALGMEMGFR 344 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~----v~p----e~~~~l~~~a~~~gf~ 344 (376)
++|+|| |||++|+.++++++++++++.++++.|. +|+.....+... +++ ++.+.+++++.++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~ 385 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATE 385 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999998886 443111112222 433 3566677777766543
No 49
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.89 E-value=2.2e-21 Score=198.21 Aligned_cols=214 Identities=16% Similarity=0.294 Sum_probs=164.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~ 205 (376)
+.+|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+.. .+..++.++++.|.+.
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKV 214 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhc
Confidence 667899999999999999998765433 4899999999999999999999999876433211 0134688999999765
Q ss_pred CCCcEE--EEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLI--EALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~I--e~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
...-++ ..+.|+.. +++.++.++++| +..+..++|+. +++++.|+ ++++.+++++.++.+++..|. +.+.++
T Consensus 215 ~~i~~~r~~~~~p~~~-~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~-k~~~~~~~~~~i~~l~~~~~~-i~i~~~ 291 (430)
T TIGR01125 215 GGIYWIRMHYLYPDEL-TDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMR-RPGSGEQQLDFIERLREKCPD-AVLRTT 291 (430)
T ss_pred CCccEEEEccCCcccC-CHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCC-CCCCHHHHHHHHHHHHHhCCC-CeEeEE
Confidence 211233 33455543 788999999985 66777789965 59999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. +|+.....+...++ .++..+|.+++.++...+
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~ 362 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKK 362 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998886 44322222333344 345667777776665544
No 50
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=9.6e-22 Score=201.96 Aligned_cols=214 Identities=16% Similarity=0.270 Sum_probs=166.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c--cc------HHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D--QG------SGHFAQT 198 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d--~g------~~~~~el 198 (376)
...|+.+++||+.+|+||+++..++.. +.++++++++++.+.+.|+++|+|+|++-.++. | ++ ...|.++
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~L 227 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDL 227 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHH
Confidence 467888999999999999999766543 588999999999999999999999997643321 1 11 1258999
Q ss_pred HHHHHhhCCCcEEEE--ecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 199 VRKLKELKPNMLIEA--LVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 199 vr~Ik~~~p~i~Ie~--l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
++.|.+.....+|.. +.|+.. +++.++.++++ ++..+..++|+. +++++.|+ |+++.++++++++.+++..|.
T Consensus 228 l~~i~~~~~~~rir~~~~~p~~~-~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~-R~~t~e~~~~~i~~lr~~~p~ 305 (448)
T PRK14333 228 LYYIHDVEGIERIRFATSHPRYF-TERLIKACAELPKVCEHFHIPFQSGDNEILKAMA-RGYTHEKYRRIIDKIREYMPD 305 (448)
T ss_pred HHHHHhcCCCeEEEECCCChhhh-hHHHHHHHhcCCcccccccCCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC
Confidence 999877532224543 335433 67888888875 466777789965 59999999 899999999999999998775
Q ss_pred CceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCC----CCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHM----PVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~----~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+.+++|+|| |||++++.++++++++++++.++++.|. +|+.... ++...++.++.+.|++++.++...+
T Consensus 306 -i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 382 (448)
T PRK14333 306 -ASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAER 382 (448)
T ss_pred -cEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999998886 4532221 2333345567888888888766554
No 51
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.88 E-value=9.6e-22 Score=200.68 Aligned_cols=213 Identities=19% Similarity=0.326 Sum_probs=167.7
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Ccc-cHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQ-GSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~-g~~~~~elvr~Ik~~ 205 (376)
+.+|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+ .|. +..++.+++++|++.
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~ 218 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKI 218 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcC
Confidence 677888999999999999999766433 48999999999999999999999999863322 111 123588999999774
Q ss_pred CCCcEEEE--ecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KPNMLIEA--LVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p~i~Ie~--l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
....++.. +.|+.. +++.++.++++| ...+..++|+. +++++.|+ |+++.++++++++.+++..|. +.+.++
T Consensus 219 ~g~~~i~~~~~~p~~i-~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~-R~~~~~~~~~~i~~lr~~~~~-i~i~~~ 295 (429)
T TIGR00089 219 DGIERIRFGSSHPDDV-TDDLIELIAENPKVCKHLHLPVQSGSDRILKRMN-RKYTREEYLDIVEKIRAKIPD-AAITTD 295 (429)
T ss_pred CCCCEEEECCCChhhc-CHHHHHHHHhCCCccCceeeccccCChHHHHhCC-CCCCHHHHHHHHHHHHHHCCC-CEEEee
Confidence 32224444 445432 788999999985 77888889975 59999999 899999999999999997664 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc-------ccCChHHHHHHHHHHHHHhhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS-------EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~-------~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|+|| |||++++.++++++++++++.++++.|. | ..++++. ..+..++...|++++.+++..+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s-p-~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~ 367 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYS-P-RPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKN 367 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCEeeccccC-C-CCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998876 3 2344433 23344567888888888776553
No 52
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=2.5e-21 Score=198.55 Aligned_cols=212 Identities=16% Similarity=0.256 Sum_probs=165.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC----cccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA----DQGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~----d~g~~~~~elvr~Ik 203 (376)
+..|+.+++||+.+|+||+++..++.. ..++++++++++.+.+.|+++|+|++.+-..+. ++...++.++++.|.
T Consensus 147 ~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~ 226 (444)
T PRK14325 147 PSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVA 226 (444)
T ss_pred ceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHH
Confidence 567888899999999999998765443 589999999999999999999999998732221 111346889999987
Q ss_pred hhCCC--cEEEEecCCCCCChHHHHHHHHcC--cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 204 ELKPN--MLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 204 ~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
+..+. +++....|+.. +++.++.++++| +..+..++|+. +++++.|+ |+++.++++++++.+++..| |+.+.
T Consensus 227 ~~~~~~~ir~~~~~p~~~-~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~-R~~~~~~~~~~i~~lr~~~~-gi~v~ 303 (444)
T PRK14325 227 AIDGIERIRYTTSHPRDF-TDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMN-RGHTALEYKSIIRKLRAARP-DIAIS 303 (444)
T ss_pred hcCCccEEEEccCCcccC-CHHHHHHHHcCCcccCceeccCCcCCHHHHHhCC-CCCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 64222 33434455433 788899999875 77788889965 59999999 89999999999999999765 48999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCC-------cccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPV-------SEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v-------~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+++|+|| |||++++.++++++++++++.++++.|. | ..++++ ...+..++.++|++++.++...+
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s-p-~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 376 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYS-P-RPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAF 376 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeecc-C-CCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988875 4 233333 22233457788888877665544
No 53
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.88 E-value=2.8e-21 Score=197.06 Aligned_cols=214 Identities=16% Similarity=0.254 Sum_probs=161.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~ 206 (376)
+.+|+.+++||+++|+||+++..+++. ..++++|+++++.+.+.|+++|+|+|+|-..+ .|.+ .++.++++.|.+..
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~-~~l~~Ll~~l~~i~ 211 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG-SRLPELLRLITEIP 211 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC-cCHHHHHHHHHhCC
Confidence 678899999999999999999776544 48999999999999999999999999875433 2211 24777777776543
Q ss_pred CC--cEEEEecCCCC--CChHHHHHHHHcC-cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 PN--MLIEALVPDFR--GNNGCVREVAKSG-LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 p~--i~Ie~l~pd~~--g~~e~l~~L~~aG-ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.. +++..+.|... -+++.++.++..+ ...+..++|+. +++++.|+ |+++.+++++.++.+++.+|+ +.+.++
T Consensus 212 ~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~-R~~~~~~~~~~i~~i~~~~~~-i~i~~~ 289 (420)
T TIGR01578 212 GEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMK-REYTVSDFEDIVDKFRERFPD-LTLSTD 289 (420)
T ss_pred CCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcC-CCCCHHHHHHHHHHHHHhCCC-CEEEee
Confidence 22 34444455321 1456666665444 35566788965 59999999 899999999999999997764 999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCC---cccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPV---SEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v---~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|+|| |||++++.++++++++++++.++++.|. .|+.....+ ...+..++.+.|++++.++...+
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~ 359 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEM 359 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999998885 343221112 22234457888998888877655
No 54
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=5.1e-21 Score=196.21 Aligned_cols=214 Identities=18% Similarity=0.287 Sum_probs=164.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-c-ccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-D-QGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d-~g~~~~~elvr~Ik~~ 205 (376)
...|+.++++|+.+|+||.++..+++. ..++++++++++.+.+.|+++|+|+|.+-..+. | .+...+.++++.|.+.
T Consensus 138 ~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~ 217 (440)
T PRK14334 138 LSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS 217 (440)
T ss_pred eEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc
Confidence 778999999999999999999765443 588999999999999999999999996532221 1 0122477888887654
Q ss_pred C-CCcEEEEecCCCCCChHHHHHHHHc--Ccccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 206 K-PNMLIEALVPDFRGNNGCVREVAKS--GLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
. +.+++..+.|+.. +++.++.|+++ |...+..++|+. +++++.|+ |+++.+++++.++.+++..+. +.+.+++
T Consensus 218 ~i~~ir~~~~~p~~i-~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~-R~~~~~~~~~~v~~lr~~~~~-i~i~~d~ 294 (440)
T PRK14334 218 GIPRVKFTTSHPMNF-TDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMA-REYRREKYLERIAEIREALPD-VVLSTDI 294 (440)
T ss_pred CCcEEEEccCCcccC-CHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhC-CCCCHHHHHHHHHHHHHhCCC-cEEEEeE
Confidence 2 2234433445433 78899999985 478888899965 69999999 899999999999999998765 7789999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcccCC----hHHHHHHHHHHHHHhhhh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSEYIT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~~v~----pe~~~~l~~~a~~~gf~~ 345 (376)
|+|| |||++|+.++++++++++++.++++.|. +|+.........++ .++.++|.+++.++...+
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 364 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRR 364 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999998886 44322111222333 456788888887766655
No 55
>PRK06267 hypothetical protein; Provisional
Probab=99.85 E-value=1.7e-20 Score=187.23 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=158.1
Q ss_pred cChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccC--CCCcCCCCCCCCCC------CCCCchhHHHHHHHHHHCC
Q 017179 102 LKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCT--RGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWG 173 (376)
Q Consensus 102 ~~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~--~~C~FC~v~~~r~~------~~l~~eEi~~~a~al~~~G 173 (376)
.+|..+++.|+..+.. .||+. -....++..++.|+ .+|+||+++..+.. ..+++|||++.++.+.+.|
T Consensus 4 ~~~~~L~~~A~~ir~~-~fG~~---v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~G 79 (350)
T PRK06267 4 EEILENSIKAFKLTEK-HHGNI---VSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIG 79 (350)
T ss_pred hHHHHHHHHHHHHHHH-HcCCe---EEEEEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcC
Confidence 3566777777766654 34432 11122355699999 99999999874321 1379999999999999999
Q ss_pred CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC
Q 017179 174 LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD 252 (376)
Q Consensus 174 ~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~ 252 (376)
++.++|+||.. +. ...+.++++.|++.. ...+.+..+-. +.+.+..+..+| +.+++||. +++++.|+
T Consensus 80 v~~~~lsgG~~--~~---~~el~~i~e~I~~~~-~~~~~~s~G~~--d~~~~~~~~l~G---v~g~~ET~~~~~~~~i~- 147 (350)
T PRK06267 80 WKLEFISGGYG--YT---TEEINDIAEMIAYIQ-GCKQYLNVGII--DFLNINLNEIEG---VVGAVETVNPKLHREIC- 147 (350)
T ss_pred CCEEEEecCCC--CC---HHHHHHHHHHHHHhh-CCceEeecccC--CHHHHhhccccC---ceeeeecCCHHHHHhhC-
Confidence 99999999864 22 234555555555432 22222222222 444555555555 45789998 58999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHH
Q 017179 253 HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFE 332 (376)
Q Consensus 253 r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~ 332 (376)
++++++++++.++.+++ .|+.+.+++|+|+||+.+|+.++++++++++++.++|.. +.|. .++++.....+...+
T Consensus 148 ~~~s~ed~~~~l~~ak~---aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~-L~P~-pGTp~~~~~~~s~~e 222 (350)
T PRK06267 148 PGKPLDKIKEMLLKAKD---LGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYS-LNPQ-KGTIFENKPSVTTLE 222 (350)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe-eeEC-CCCcCCCCCCCCHHH
Confidence 47899999999999999 589999999999999999999999999999999988854 4573 467766655566677
Q ss_pred HHHHHHHHH
Q 017179 333 RYRALGMEM 341 (376)
Q Consensus 333 ~l~~~a~~~ 341 (376)
.++.+|..+
T Consensus 223 ~lr~ia~~R 231 (350)
T PRK06267 223 YMNWVSSVR 231 (350)
T ss_pred HHHHHHHHH
Confidence 777777654
No 56
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.79 E-value=4.6e-19 Score=166.12 Aligned_cols=214 Identities=17% Similarity=0.294 Sum_probs=160.1
Q ss_pred EEEEee-eCCccCCCCcCCCCCCCC--CC---CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMI-LGDTCTRGCRFCNVKTSR--AP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~-i~d~C~~~C~FC~v~~~r--~~---~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
..|.|. -+.+|+.+|+||+++... +- ..+..||+++.|+.+.+.|-..+++-+..||-.. ....|-.+++.|
T Consensus 83 qCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~G--Rk~~fk~IlE~i 160 (380)
T KOG2900|consen 83 QCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKG--RKSAFKRILEMI 160 (380)
T ss_pred eeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhcc--chhHHHHHHHHH
Confidence 456664 478999999999988532 11 1278999999999999999999998776665332 133455555555
Q ss_pred HhhC-CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 203 KELK-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 203 k~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
++.. =++.+++-++-. +.+..++|+++|+..|+||++|+.+.|.+|- -.-+|+++|++|..+++ .|+.++++.
T Consensus 161 kevr~MgmEvCvTLGMv--~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~---aGikvCsGG 234 (380)
T KOG2900|consen 161 KEVRDMGMEVCVTLGMV--DQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVRE---AGIKVCSGG 234 (380)
T ss_pred HHHHcCCceeeeeeccc--cHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHH---hcceecccc
Confidence 5543 246666666655 7889999999999999999999999999987 47799999999999999 689999999
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC--cEEEeecCCCCCCCCCCCcccCC-h-HHHHHHHHHHHHHhhhhhccchhHhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGV--DVMTFGQYMRPSKRHMPVSEYIT-P-EAFERYRALGMEMGFRYVASGPMVRSS 355 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~v--d~v~~~qY~~P~~~~~~v~~~v~-p-e~~~~l~~~a~~~gf~~~~sgp~vrss 355 (376)
|+||||.++|++-.+..|..... ..||| +-+-| .+++|+.+.+. + +-.+.++.+|.. +.|+.-.++|-+
T Consensus 235 IlGLGE~e~DriGlihtLatmp~HPESvPi-N~Lva-ikGTP~~d~~~k~l~i~e~lR~IaTA---RIvMPKaiiRla 307 (380)
T KOG2900|consen 235 ILGLGESEDDRIGLIHTLATMPPHPESVPI-NRLVA-IKGTPMADEKSKKLQIDEILRTIATA---RIVMPKAIIRLA 307 (380)
T ss_pred cccccccccceeeeeeeeccCCCCCccccc-ceEEe-cCCcccchhhcccccHHHHHHHHhhh---heechHHHHHHh
Confidence 99999999999999888887764 56777 44556 46888776432 1 234455666554 355555566643
No 57
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.77 E-value=2.2e-17 Score=148.46 Aligned_cols=176 Identities=16% Similarity=0.289 Sum_probs=140.4
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHHCC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~~G-----~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.++.++++|+.+|.||......+ ...++++++.+.++.+.+.| ++.+.++||+....+ ..++.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS---PEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC---HHHHHHHHHHHHH
Confidence 35678999999999999886432 22378899999999886665 477888888755443 2357788888877
Q ss_pred hCC---CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEE
Q 017179 205 LKP---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKT 279 (376)
Q Consensus 205 ~~p---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G-i~tkt 279 (376)
..+ ...+.+.+-....+.+.++.|+++|++.+.+++|+. ++++..++ ++.+++++++.++.+++. | +.+.+
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---g~~~v~~ 155 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHTVEDVLEAVEKLREA---GPIKVST 155 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCCHHHHHHHHHHHHHh---CCcceEE
Confidence 654 344444442122278999999999999999999976 58888888 689999999999999994 6 78999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++|+|+ +++++++.+.++++++++++.+.+.+|.
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 156 DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 999999 6999999999999999999999987775
No 58
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-17 Score=165.35 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=160.4
Q ss_pred ccEEEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeee----CCCCC-------------
Q 017179 127 TATATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVD----RDDLA------------- 188 (376)
Q Consensus 127 ~~tat~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~----r~dl~------------- 188 (376)
.++.+|+-+-.||++.|+||+++..|+.. +.+.+.|+++++.+.+.|+++|.|.|++ ||+-.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 34666776678999999999999877654 5888999999999999999999999996 22210
Q ss_pred --------cccHHHHHHHHHHHHhhCCCcEEEEecC---CCCCChHHHHHHHHcC-ccccccc-cc-chHHHHHhhcCCC
Q 017179 189 --------DQGSGHFAQTVRKLKELKPNMLIEALVP---DFRGNNGCVREVAKSG-LNVFAHN-IE-TVEELQSAVRDHR 254 (376)
Q Consensus 189 --------d~g~~~~~elvr~Ik~~~p~i~Ie~l~p---d~~g~~e~l~~L~~aG-ld~i~h~-lE-tv~~l~~~vr~r~ 254 (376)
..|--.|+.+++.+....|+++|..-.| || .+|.|+.+.+-. .+...|. .. ...++++.|+ |+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDf--pdevl~li~~rdnickqihlPAqSgds~vLE~mr-Rg 374 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDF--PDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMR-RG 374 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCC--hHHHHHHHHhCcchhheeeccccCCchHHHHHHH-cc
Confidence 0122369999999999999999998877 56 566666666542 1222332 33 3449999999 99
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCC-CCC----CCCcccCC
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRH----MPVSEYIT 327 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~-~~~----~~v~~~v~ 327 (376)
++.+.+++...+++...|+ +..++++|-|| |||++|..+++-.|++.|.|++-+|.|+ |.. .-| ..|++.|+
T Consensus 375 ysreayl~lv~~Irs~iPg-VglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 375 YSREAYLELVAHIRSMIPG-VGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred CChHhhhhHHHHHHhhCCC-CcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 9999999999999999986 88999999999 9999999999999999999999999994 542 122 23555566
Q ss_pred hHHHHHHHHH
Q 017179 328 PEAFERYRAL 337 (376)
Q Consensus 328 pe~~~~l~~~ 337 (376)
.++..+|..+
T Consensus 454 nrrl~~Li~~ 463 (552)
T KOG2492|consen 454 NRRLFELITF 463 (552)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 59
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.71 E-value=2.4e-15 Score=156.63 Aligned_cols=177 Identities=12% Similarity=0.219 Sum_probs=139.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHH-HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~-~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+..+..+.||+.+|+||.++...+. ...+++.++++++.+. +.|++.+.|+..+ +-....++.+++++|.+..|
T Consensus 194 ~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~----f~~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 194 VAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE----PTINRKKFQEFCEEIIARNP 269 (497)
T ss_pred eeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc----cccCHHHHHHHHHHHHhcCC
Confidence 3445679999999999998753222 2478899999988875 5799999886432 11125678899999887642
Q ss_pred -CcEEEEec-CC-CCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 208 -NMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 208 -~i~Ie~l~-pd-~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
.+...+.+ .+ ...+++.++.++++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t~~~~~~ai~~l~~---~Gi~~~~~~I~ 345 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTTTSTNKEAIRLLRQ---HNILSEAQFIT 345 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCcEEEEEEE
Confidence 34433332 12 22267899999999999999999976 59999999 79999999999999999 58999999999
Q ss_pred ec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 284 GC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 284 Gl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
|+ |||.+++.++++++.+++++.+.+. .+.|
T Consensus 346 G~P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP 377 (497)
T TIGR02026 346 GFENETDETFEETYRQLLDWDPDQANWL-MYTP 377 (497)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCceEEE-EecC
Confidence 99 9999999999999999999988874 3445
No 60
>PRK01254 hypothetical protein; Provisional
Probab=99.70 E-value=9.3e-16 Score=161.33 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=140.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC--CCCCchhHHHHHHHHHHC--CCcEEE--EEeeeCCCCC----c---------
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASW--GLDYVV--ITSVDRDDLA----D--------- 189 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi~~~a~al~~~--G~~eIv--LTsg~r~dl~----d--------- 189 (376)
..+++.+..||..+|+||+++..++. .+.++++|+++++.+.+. |+++++ |.|++-..+. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45678889999999999999987765 368999999999999964 999999 8887622111 1
Q ss_pred -------------ccHHHHHHHHHHHHhhCCCc-EEEEecC---CCC-CChHHHHHHHHcCcc-cccccccc-hHHHHHh
Q 017179 190 -------------QGSGHFAQTVRKLKELKPNM-LIEALVP---DFR-GNNGCVREVAKSGLN-VFAHNIET-VEELQSA 249 (376)
Q Consensus 190 -------------~g~~~~~elvr~Ik~~~p~i-~Ie~l~p---d~~-g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~~ 249 (376)
..-..+.+++++|++. |++ .|.+..+ |+. .+++.++.+.+..+- .+...+|. ++++++.
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I-pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~ 530 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARDL-KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSK 530 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHhC-CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHH
Confidence 1135799999999864 454 4544443 332 147788989885433 23344784 5699999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCC
Q 017179 250 VRDHR--ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (376)
Q Consensus 250 vr~r~--~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~ 316 (376)
|+ +. ++++++.++++.+++..|.++.+.+.+|+|| |||++|+.+++++|++++++..-+ |-+.|+
T Consensus 531 M~-Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQV-Q~FTPt 598 (707)
T PRK01254 531 MM-KPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV-QNFYPS 598 (707)
T ss_pred hC-CCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCccee-eeeecC
Confidence 98 54 7899999999999998775577889999999 999999999999999999876555 444453
No 61
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.69 E-value=1.2e-15 Score=157.64 Aligned_cols=171 Identities=12% Similarity=0.211 Sum_probs=136.0
Q ss_pred EeeeCCccCCCCcCCCCCCC-CC-C-CCCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 132 IMILGDTCTRGCRFCNVKTS-RA-P-PPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~-r~-~-~~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
.+..+.||+.+|+||.++.. .+ . ...+++.++++++.+.+. |++++.+... .+. ....++.++++.|++.
T Consensus 199 ~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd---~f~-~~~~~~~~l~~~l~~~- 273 (472)
T TIGR03471 199 SLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFDDD---TFT-DDKPRAEEIARKLGPL- 273 (472)
T ss_pred EEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCC---CCC-CCHHHHHHHHHHHhhc-
Confidence 34568999999999987642 11 1 237899999999888765 7899988532 121 1246778888888764
Q ss_pred CCcEEEEecC-CCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 207 PNMLIEALVP-DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 207 p~i~Ie~l~p-d~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
++...+... ++ +++.++.|+++|+..+..++|+. +++++.|+ ++.+.++..+.++.+++ .|+.+..++|+|
T Consensus 274 -~i~~~~~~~~~~--~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~~~~~~~~i~~~~~---~Gi~v~~~~IiG 346 (472)
T TIGR03471 274 -GVTWSCNARANV--DYETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLTVEIARRFTRDCHK---LGIKVHGTFILG 346 (472)
T ss_pred -CceEEEEecCCC--CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHH---CCCeEEEEEEEe
Confidence 344444332 44 78999999999999999999976 59999998 78999999999999999 589999999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+ |||.+++.++++++.+++++.+.+.. +.|
T Consensus 347 lPget~e~~~~ti~~~~~l~~~~~~~~~-l~P 377 (472)
T TIGR03471 347 LPGETRETIRKTIDFAKELNPHTIQVSL-AAP 377 (472)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeeee-ccc
Confidence 9 99999999999999999999888743 345
No 62
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.69 E-value=2e-15 Score=133.68 Aligned_cols=180 Identities=19% Similarity=0.351 Sum_probs=141.5
Q ss_pred eeCCccCCCCcCCCCCCCCCCCC-CCc--hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 134 ILGDTCTRGCRFCNVKTSRAPPP-PDP--DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r~~~~-l~~--eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
.++++|+.+|.||.......... ... +++...+......+...+.++||+.-..+ ++.++++.+++..+++.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~~~~ 76 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELPGFE 76 (204)
T ss_pred ccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCCCce
Confidence 35789999999999987543322 222 46777777788889999999888643222 68899999998767778
Q ss_pred EEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET 288 (376)
+.+.+....-+++.++.|+++|++.+.+++|+.+ ..+..+.....+++++++.++.+++. |+.+.+++|+|+ +++
T Consensus 77 ~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA---GLGLSTTLLVGLGDED 153 (204)
T ss_pred EEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc---CCCceEEEEEecCCCh
Confidence 8777654322688999999999999999999875 77777752478999999999999994 688999999999 555
Q ss_pred HHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCc
Q 017179 289 PDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVS 323 (376)
Q Consensus 289 ~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~ 323 (376)
.+++.++++.+.+.. ++.+.+.+|. | ..++++.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~-p-~~~t~~~ 187 (204)
T cd01335 154 EEDDLEELELLAEFRSPDRVSLFRLL-P-EEGTPLE 187 (204)
T ss_pred hHHHHHHHHHHHhhcCcchhhhhhhc-c-cCCCeee
Confidence 699999999999998 8989887775 4 2355554
No 63
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.66 E-value=1.3e-15 Score=131.57 Aligned_cols=157 Identities=18% Similarity=0.331 Sum_probs=122.6
Q ss_pred eeCCccCCCCcCCCCCCC--C-CCCCCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CC
Q 017179 134 ILGDTCTRGCRFCNVKTS--R-APPPPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~--r-~~~~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~ 208 (376)
..+++|+.+|.||..+.. . ....++++++.+.++.+ ...|.+.+.++||+....++ +.+.+..+.+.. +.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~-----~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD-----FIELLELLRKIKKRG 76 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH-----HHHHHHHHHHCTCTT
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh-----HHHHHHHHHHhhccc
Confidence 467999999999999974 2 12248999999999999 68898888888776433333 556666665542 56
Q ss_pred cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-H-HHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017179 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-E-LQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (376)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~-l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl- 285 (376)
+.+.+.+....-+.+.++.++++|.+.+..++|+.+ + +.+.++ ++.++++.++.++.+++ .|+.....+|+|+
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALERLKE---AGIPRVIIFIVGLP 152 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHHHHH---TTSETEEEEEEEBT
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 788777765533489999999999999999999875 6 888888 78999999999999999 4676466677777
Q ss_pred CCCHHHHHHHHHHH
Q 017179 286 GETPDQVVSTMEKV 299 (376)
Q Consensus 286 GET~ee~~e~L~~L 299 (376)
|||++|+.+++++|
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999875
No 64
>PRK00955 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-15 Score=157.63 Aligned_cols=184 Identities=12% Similarity=0.186 Sum_probs=128.5
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC--CCCchhHHHHHHHHHHC-CCcEEE--EEeeeCCCCC---------------
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVV--ITSVDRDDLA--------------- 188 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~--~l~~eEi~~~a~al~~~-G~~eIv--LTsg~r~dl~--------------- 188 (376)
..+++.+++||..+|+||+++..++.. +.++++|+++++.+.+. |+++++ |+|.+-.-+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 445567899999999999999877654 68999999999999887 888874 2232211100
Q ss_pred -----------cccHHHHHHHHHHHHhhCCCc-EEEEecC---CCC---CChHHHHHHHHcCcc-cccccccc-hHHHHH
Q 017179 189 -----------DQGSGHFAQTVRKLKELKPNM-LIEALVP---DFR---GNNGCVREVAKSGLN-VFAHNIET-VEELQS 248 (376)
Q Consensus 189 -----------d~g~~~~~elvr~Ik~~~p~i-~Ie~l~p---d~~---g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~ 248 (376)
+.....+.+++++|++. |++ ++.+.++ |+. .+.+.++.|.+..+. .+...+|+ ++++++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~l-~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk 450 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRKL-PGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLK 450 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhcc-CCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHH
Confidence 01134699999999775 443 4333222 221 034577888775433 35556886 569999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhCCC-Cc--eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 249 AVRDHRANFKQSLDVLMMAKDYVPA-GT--LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 249 ~vr~r~~t~e~~L~vl~~ak~~~p~-Gi--~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
.|+ +. +.+.+.++++.+.+..+. |+ .+.+++|+|| |||++|+.++++++++++++.+.++.|. +|
T Consensus 451 ~M~-K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~P 520 (620)
T PRK00955 451 LMG-KP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTP 520 (620)
T ss_pred HhC-CC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCC
Confidence 998 44 656666666555554433 33 4899999999 9999999999999999999999886664 44
No 65
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.65 E-value=6e-15 Score=153.20 Aligned_cols=206 Identities=17% Similarity=0.272 Sum_probs=146.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC--CCCCC---CchhHHHHHHHHHH------CCCcEEEEEeeeCCCCCcccHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR--APPPP---DPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQ 197 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r--~~~~l---~~eEi~~~a~al~~------~G~~eIvLTsg~r~dl~d~g~~~~~e 197 (376)
..-|+-+ -.|+.+|.||.++... +...+ -.+.+.+.++.+.+ .++..|.|.||+..-++ .+.+.+
T Consensus 164 ~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~---~~~L~~ 239 (488)
T PRK08207 164 VSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLT---AEELER 239 (488)
T ss_pred eEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCC---HHHHHH
Confidence 3445544 4899999999998641 11111 12333333333321 24678888888654443 567888
Q ss_pred HHHHHHhhCCC------cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHh
Q 017179 198 TVRKLKELKPN------MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 198 lvr~Ik~~~p~------i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~ 270 (376)
+++.|++.+|+ +.+++..|+.. +++.++.|+++|++.+.+++|+.+ ++++.|+ |++++++.++.++.+++
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~i-t~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~ig-R~ht~e~v~~ai~~ar~- 316 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTI-TEEKLEVLKKYGVDRISINPQTMNDETLKAIG-RHHTVEDIIEKFHLARE- 316 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCC-CHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 88888876642 34454466654 789999999999999999999865 9999998 89999999999999999
Q ss_pred CCCCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc----c--CChHH----HHHHHHHH
Q 017179 271 VPAGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE----Y--ITPEA----FERYRALG 338 (376)
Q Consensus 271 ~p~Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~----~--v~pe~----~~~l~~~a 338 (376)
.|+ .++.++|+|+ |||.+++.++++++.+++++.+++..+. | .+++++.+ + +..++ ++...+..
T Consensus 317 --~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~-i-~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 317 --MGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLA-I-KRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred --CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEece-E-cCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 477 7999999999 9999999999999999999999997663 3 23444321 1 22333 33445555
Q ss_pred HHHhhhh
Q 017179 339 MEMGFRY 345 (376)
Q Consensus 339 ~~~gf~~ 345 (376)
.++||..
T Consensus 393 ~~~Gy~~ 399 (488)
T PRK08207 393 KELGYVP 399 (488)
T ss_pred HHcCCHh
Confidence 6667754
No 66
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.65 E-value=4.7e-15 Score=149.09 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=149.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCC-CCCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTS--RAP-PPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~--r~~-~~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
.-|+-+- .|+..|.||.++.. ++. ....++.++++++.+... +++.|.+.||+...++ .+.+.++++.|+
T Consensus 3 ~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~---~~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIP-FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALS---AEQLERLLTAIH 78 (377)
T ss_pred eEEEEeC-CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCC---HHHHHHHHHHHH
Confidence 3455554 49999999998853 211 112356666776665554 4677777766543233 567889999998
Q ss_pred hhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-
Q 017179 204 ELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL- 276 (376)
Q Consensus 204 ~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~- 276 (376)
+.++ . +.++ ..|+.. +.+.++.|+++|++.+.+++|+. +++++.|+ |++++++.++.++.+++ .|+.
T Consensus 79 ~~~~~~~~~eit~e-~~p~~l-~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~~~~~~~~i~~l~~---~g~~~ 152 (377)
T PRK08599 79 RNLPLSGLEEFTFE-ANPGDL-TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHNEEDVYEAIANAKK---AGFDN 152 (377)
T ss_pred HhCCCCCCCEEEEE-eCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCc
Confidence 8653 2 3334 345433 78999999999999999999986 49999999 89999999999999999 4665
Q ss_pred EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc------c--CC----hHHHHHHHHHHHHHhh
Q 017179 277 TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE------Y--IT----PEAFERYRALGMEMGF 343 (376)
Q Consensus 277 tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~------~--v~----pe~~~~l~~~a~~~gf 343 (376)
++.++|+|+ |||.+++.++++++.+++++.+.+..+. | ..++++.+ . .. .+.++...+...+.||
T Consensus 153 v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~-~-~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy 230 (377)
T PRK08599 153 ISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLI-L-EPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF 230 (377)
T ss_pred EEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeecee-e-cCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999 9999999999999999999998886543 3 12333211 1 11 2234444555566688
Q ss_pred hhhccchhHhh
Q 017179 344 RYVASGPMVRS 354 (376)
Q Consensus 344 ~~~~sgp~vrs 354 (376)
......=++|.
T Consensus 231 ~~~~~~~fa~~ 241 (377)
T PRK08599 231 HQYEISNFAKP 241 (377)
T ss_pred cEeeeeeeeCC
Confidence 66544335543
No 67
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.65 E-value=1.7e-14 Score=142.73 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=138.9
Q ss_pred eeeCCccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 133 MILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
+.+++.|+.+|.||...... ....++.+|+.+.++++.+.|++.|.||||+.--.+ .+.++++.+++. +.+
T Consensus 18 i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~-----dl~~li~~i~~~-~~l 91 (329)
T PRK13361 18 LSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRR-----GCDQLVARLGKL-PGL 91 (329)
T ss_pred EEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccc-----cHHHHHHHHHhC-CCC
Confidence 34699999999999854321 122489999999999999999999999999742222 367888888764 333
Q ss_pred -EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017179 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (376)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlG 286 (376)
.+.+.+-... ..+.++.|+++|++.+++.+|+.+ +.|.+++ ++.++++.++.++.+++ .|+ .++.++++--|
T Consensus 92 ~~i~itTNG~l-l~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~-~~g~~~~vl~~i~~~~~---~Gi~~v~in~v~~~g 166 (329)
T PRK13361 92 EELSLTTNGSR-LARFAAELADAGLKRLNISLDTLRPELFAALT-RNGRLERVIAGIDAAKA---AGFERIKLNAVILRG 166 (329)
T ss_pred ceEEEEeChhH-HHHHHHHHHHcCCCeEEEEeccCCHHHhhhhc-CCCCHHHHHHHHHHHHH---cCCCceEEEEEEECC
Confidence 4544443221 246789999999999999999875 9999999 67899999999999998 467 67777766559
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCC--CcccCChHHH
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP--VSEYITPEAF 331 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~--v~~~v~pe~~ 331 (376)
++++|+.+.+++++++++++. |..|+ |...... -..+++++++
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~-~ie~m-P~g~~~~~~~~~~~~~~e~ 211 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIA-FIEEM-PLGEIDERRRARHCSSDEV 211 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEE-EEecc-cCCCccchhhccCcCHHHH
Confidence 999999999999999999876 43555 6322111 2245566554
No 68
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.62 E-value=2.8e-14 Score=142.79 Aligned_cols=205 Identities=9% Similarity=0.132 Sum_probs=147.8
Q ss_pred CccCCCCcCCCCCCCCCC--C-C---CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---
Q 017179 137 DTCTRGCRFCNVKTSRAP--P-P---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP--- 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~--~-~---l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p--- 207 (376)
--|...|.||.+.+.-.. . . .-.+|+...++.+....++.|-|-||+..-++ .+.+.++++.|++..+
T Consensus 14 PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~---~~~l~~ll~~i~~~~~~~~ 90 (353)
T PRK05904 14 PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLN---DQLLDILLSTIKPYVDNNC 90 (353)
T ss_pred CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCC---HHHHHHHHHHHHHhcCCCC
Confidence 469999999999863111 1 1 12344444444332344677777777654444 4678888888887653
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl 285 (376)
.+.+++ .|+.. +++.++.|+++|+..+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +..++|+|+
T Consensus 91 eitiE~-nP~~l-t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~-R~~~~~~~~~ai~~lr~---~G~~~v~~dlI~Gl 164 (353)
T PRK05904 91 EFTIEC-NPELI-TQSQINLLKKNKVNRISLGVQSMNNNILKQLN-RTHTIQDSKEAINLLHK---NGIYNISCDFLYCL 164 (353)
T ss_pred eEEEEe-ccCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEEeecC
Confidence 245553 45433 78999999999999999999976 59999999 89999999999999999 4665 999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc---cC----ChHHHHHHHHHHHHHhhhhhccchhHh
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE---YI----TPEAFERYRALGMEMGFRYVASGPMVR 353 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~---~v----~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (376)
|||.+++.++++++.+++++.+.+..+. .|+ +++.+ .+ ..+.++...++..+.||....-.-+.|
T Consensus 165 Pgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~g---T~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 238 (353)
T PRK05904 165 PILKLKDLDEVFNFILKHKINHISFYSLEIKEG---SILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTN 238 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCC---ChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcC
Confidence 9999999999999999999999887764 453 22221 12 234566777788888887643223444
No 69
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.62 E-value=5.9e-14 Score=138.82 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=133.1
Q ss_pred eeCCccCCCCcCCCCCC-CC----CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 134 ILGDTCTRGCRFCNVKT-SR----APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~-~r----~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
.+++.|+.+|.||.... .. ....++.+|+.+.++.+.+.|++.|.||||+.--.++ +.++|+.+++. ++
T Consensus 15 ~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~-----l~~li~~i~~~-~g 88 (334)
T TIGR02666 15 SVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD-----LVELVARLAAL-PG 88 (334)
T ss_pred EecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCC-----HHHHHHHHHhc-CC
Confidence 46999999999998764 21 1234899999999999999999999999997432222 67788887663 34
Q ss_pred c-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec
Q 017179 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC 285 (376)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl 285 (376)
+ .+.+.+-... ..+.++.|+++|++.+++++|+.+ +.|++++.++.++++.++.|+.+++ .|+. ++.++++.-
T Consensus 89 i~~v~itTNG~l-l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~---~G~~~v~in~vv~~ 164 (334)
T TIGR02666 89 IEDIALTTNGLL-LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALA---AGLEPVKLNTVVMR 164 (334)
T ss_pred CCeEEEEeCchh-HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHH---cCCCcEEEEEEEeC
Confidence 5 5665553221 356789999999999999999875 8899998446799999999999999 4676 888887777
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|++++|+.+.+++++++++++ .+..|+
T Consensus 165 g~n~~ei~~l~~~~~~~gv~~-~~ie~m 191 (334)
T TIGR02666 165 GVNDDEIVDLAEFAKERGVTL-RFIELM 191 (334)
T ss_pred CCCHHHHHHHHHHHHhcCCeE-EEEecc
Confidence 999999999999999999974 343454
No 70
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.62 E-value=3.4e-14 Score=139.25 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred CCCCcCCCCCCCCCCC---CCCchhHHHHH----HHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEE
Q 017179 140 TRGCRFCNVKTSRAPP---PPDPDEPTNVA----EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLI 211 (376)
Q Consensus 140 ~~~C~FC~v~~~r~~~---~l~~eEi~~~a----~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~I 211 (376)
..+|.||.......-. ..+.++|.+.. +...+.+.--+.|+||+...++ .+.+.++++.+++ .|. +.+
T Consensus 37 ~~gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~---~~~L~~l~~~i~~-~~~~~~i 112 (302)
T TIGR01212 37 RGGCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAP---VEVLKEMYEQALS-YDDVVGL 112 (302)
T ss_pred CCCcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCC---HHHHHHHHHHHhC-CCCEEEE
Confidence 4689999876543111 12333443333 3333333333778888765554 6788899999887 443 233
Q ss_pred EE-ecCCCCCChHH---HHHHHHcCcc-cccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 212 EA-LVPDFRGNNGC---VREVAKSGLN-VFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 212 e~-l~pd~~g~~e~---l~~L~~aGld-~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
.+ .-|+.. +++. ++.++++|.+ .+..++|+.+ ++++.|+ |+++++++++.++.+++ .|+.+.+++|+|+
T Consensus 113 si~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~-Rg~t~~~~~~ai~~l~~---~gi~v~~~lI~Gl 187 (302)
T TIGR01212 113 SVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN-RGHDFACYVDAVKRARK---RGIKVCSHVILGL 187 (302)
T ss_pred EEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc-CcChHHHHHHHHHHHHH---cCCEEEEeEEECC
Confidence 33 245543 4544 4455567884 5889999865 9999999 89999999999999999 5799999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~ 324 (376)
|||.+++.++++++.+++++.+.+.++ .| .+++++.+
T Consensus 188 Pget~e~~~~t~~~l~~l~~d~i~i~~l-~~-~pgT~L~~ 225 (302)
T TIGR01212 188 PGEDREEMMETAKIVSLLDVDGIKIHPL-HV-VKGTKMAK 225 (302)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEEE-Ee-cCCCHHHH
Confidence 999999999999999999999998655 34 34555544
No 71
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.61 E-value=4.9e-14 Score=139.11 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=132.2
Q ss_pred eeeCCccCCCCcCCCCCCC----CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 133 MILGDTCTRGCRFCNVKTS----RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~----r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
+.++++|+.+|.||..... .....++++|+.+.++.+.+.|++.|.||||+.--.+ .+.++++.+++..+.
T Consensus 21 i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~-----~l~~li~~i~~~~~~ 95 (331)
T PRK00164 21 ISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRK-----DLEDIIAALAALPGI 95 (331)
T ss_pred EEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCcc-----CHHHHHHHHHhcCCC
Confidence 4579999999999987642 1122489999999999999999999999999732222 267888888765333
Q ss_pred cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecC
Q 017179 209 MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCG 286 (376)
Q Consensus 209 i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlG 286 (376)
..|.+.+-... ..+.++.|+++|++.+++++++.+ +.|..++ ++.++++.++.|+.+++. |+ .++.++++--|
T Consensus 96 ~~i~itTNG~l-l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~~~~~vl~~i~~~~~~---g~~~v~i~~vv~~g 170 (331)
T PRK00164 96 RDLALTTNGYL-LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRDRLDQVLAGIDAALAA---GLTPVKVNAVLMKG 170 (331)
T ss_pred ceEEEEcCchh-HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCCCHHHHHHHHHHHHHC---CCCcEEEEEEEECC
Confidence 45555543221 246788999999999999999865 8899998 678999999999999994 56 67877766559
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++++|+.+.+++++++++++- +..|+
T Consensus 171 ~n~~ei~~l~~~~~~~gv~v~-~ie~~ 196 (331)
T PRK00164 171 VNDDEIPDLLEWAKDRGIQLR-FIELM 196 (331)
T ss_pred CCHHHHHHHHHHHHhCCCeEE-EEEee
Confidence 999999999999999998743 33565
No 72
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.61 E-value=4.8e-14 Score=142.20 Aligned_cols=206 Identities=11% Similarity=0.199 Sum_probs=145.6
Q ss_pred CccCCCCcCCCCCCCCCCCCCCchh-HHHHHHHHH-------HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-
Q 017179 137 DTCTRGCRFCNVKTSRAPPPPDPDE-PTNVAEAIA-------SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP- 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l~~eE-i~~~a~al~-------~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p- 207 (376)
--|+..|.||.+.+.......+.++ +....+++. ..+++.|.|.||+..-++ .+.+.++++.|++.+|
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~---~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS---AEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC---HHHHHHHHHHHHHhCCC
Confidence 4699999999987642112233333 222333332 256899999999865554 4678888999988653
Q ss_pred ----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeE
Q 017179 208 ----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSI 281 (376)
Q Consensus 208 ----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~i 281 (376)
.+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.|+ |.+++++.++.++.+++ .|+. +..++
T Consensus 91 ~~~~eit~e~np~~l--~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~~~~---~G~~~v~~dl 164 (378)
T PRK05660 91 APDAEITMEANPGTV--EADRFVGYQRAGVNRISIGVQSFSEEKLKRLG-RIHGPDEAKRAAKLAQG---LGLRSFNLDL 164 (378)
T ss_pred CCCcEEEEEeCcCcC--CHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEEe
Confidence 23444422234 789999999999999999999875 9999999 89999999999999999 4674 69999
Q ss_pred EEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc----cCChH----HHHHHHHHHHHHhhhhhccchh
Q 017179 282 MLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE----YITPE----AFERYRALGMEMGFRYVASGPM 351 (376)
Q Consensus 282 mvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~----~v~pe----~~~~l~~~a~~~gf~~~~sgp~ 351 (376)
|+|+ |+|.+++.++++.+.+++++.+.+.++. .| ++++.+ .+..+ .++...+.-.+.||....-.=+
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~---gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEP---NTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEecc---CCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
Confidence 9999 9999999999999999999999987664 34 222222 22222 2333444555667765433324
Q ss_pred Hhh
Q 017179 352 VRS 354 (376)
Q Consensus 352 vrs 354 (376)
.|-
T Consensus 242 a~~ 244 (378)
T PRK05660 242 AKP 244 (378)
T ss_pred cCC
Confidence 443
No 73
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.60 E-value=4.2e-14 Score=141.99 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=141.7
Q ss_pred CccCCCCcCCCCCCCCCCCCCC---chhHHHHHHHHH-HCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh--CCCcE
Q 017179 137 DTCTRGCRFCNVKTSRAPPPPD---PDEPTNVAEAIA-SWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNML 210 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l~---~eEi~~~a~al~-~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~--~p~i~ 210 (376)
--|+..|.||.++...+..... ++.++++++.+. ..+++.|.|.||+..-++ .+.+..+++.|++. .+++.
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~---~~~l~~L~~~i~~~~~~~~~e 87 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS---LEALEILKETIKKLNKKEDLE 87 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC---HHHHHHHHHHHHhCCCCCCCE
Confidence 4699999999998653222222 344444443322 234678888887654343 34555666776542 13344
Q ss_pred EEE-ecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEec-C
Q 017179 211 IEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGC-G 286 (376)
Q Consensus 211 Ie~-l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGl-G 286 (376)
+.+ ..|+.. +++.++.|+++|++.+.+++|+.+ ++++.++ |.+++++.++.++.+++ .|+. +..++|+|+ |
T Consensus 88 itie~~p~~~-t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~g~~~v~~dli~GlPg 162 (374)
T PRK05799 88 FTVEGNPGTF-TEEKLKILKSMGVNRLSIGLQAWQNSLLKYLG-RIHTFEEFLENYKLARK---LGFNNINVDLMFGLPN 162 (374)
T ss_pred EEEEeCCCcC-CHHHHHHHHHcCCCEEEEECccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEEEEeecCCCC
Confidence 433 335433 789999999999999999999765 9999998 89999999999999999 4674 899999999 9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc--------CChHH----HHHHHHHHHHHhhhhhccchhHhh
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--------ITPEA----FERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~--------v~pe~----~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
||.+++.++++++.+++++.+.+..+. | ..++++.+. +..+. ++...+.-.+.||....-.=++|.
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~-~-~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~ 240 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLI-I-EEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKP 240 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccE-e-cCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECC
Confidence 999999999999999999999887653 3 223443221 12222 333344555667766543334443
No 74
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.59 E-value=4.7e-14 Score=141.82 Aligned_cols=206 Identities=15% Similarity=0.225 Sum_probs=144.2
Q ss_pred ccCCCCcCCCCCCCC-CCC--CCC----chhHHHHHHHHHH-C-----CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 138 TCTRGCRFCNVKTSR-APP--PPD----PDEPTNVAEAIAS-W-----GLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 138 ~C~~~C~FC~v~~~r-~~~--~l~----~eEi~~~a~al~~-~-----G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-|+..|.||.+.... ... ..+ .+.+.++++...+ . .++.|.+.||+.--++ ...+.++++.|++
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~ll~~i~~ 87 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG---AEGLARVLDAVRD 87 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC---HHHHHHHHHHHHH
Confidence 699999999997532 110 112 3455555554432 2 2577777777644343 4668888888877
Q ss_pred hC---CCcEEEE-ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017179 205 LK---PNMLIEA-LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (376)
Q Consensus 205 ~~---p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tk 278 (376)
.+ +++.+.+ ..|+.. +++.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +.
T Consensus 88 ~~~~~~~~e~t~e~~p~~i-~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~s~~~~~~a~~~l~~---~g~~~v~ 162 (375)
T PRK05628 88 TFGLAPGAEVTTEANPEST-SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD-RTHTPGRAVAAAREARA---AGFEHVN 162 (375)
T ss_pred hCCCCCCCEEEEEeCCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCcEE
Confidence 54 3333332 245433 78999999999999999999976 49999999 89999999999999999 4677 99
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc--------CC----hHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY--------IT----PEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~--------v~----pe~~~~l~~~a~~~gf~~ 345 (376)
.++|+|+ |||.+++.++++.+.+++++.+.+..+. + ..++++.+. +. .+.+....+...+.||..
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~-~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALI-V-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeee-c-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 9999999 9999999999999999999999887764 2 123333221 11 123444555556678866
Q ss_pred hccchhHh
Q 017179 346 VASGPMVR 353 (376)
Q Consensus 346 ~~sgp~vr 353 (376)
....-++|
T Consensus 241 ye~s~fa~ 248 (375)
T PRK05628 241 YEVSNWAR 248 (375)
T ss_pred eeeccccC
Confidence 54433554
No 75
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.59 E-value=1.6e-13 Score=138.23 Aligned_cols=171 Identities=17% Similarity=0.276 Sum_probs=131.0
Q ss_pred eeeCCccCCCCcCCCCCCCC--CC--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 133 MILGDTCTRGCRFCNVKTSR--AP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r--~~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
+.+++.|+.+|.||...... .+ ..++.+|+.+.++.+.+.|++.|.||||+.- +. ..+.++++.+++. ++
T Consensus 62 isvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPl-lr----~dl~eli~~l~~~-~g 135 (373)
T PLN02951 62 ISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPT-LR----KDIEDICLQLSSL-KG 135 (373)
T ss_pred EEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCc-ch----hhHHHHHHHHHhc-CC
Confidence 35789999999999765321 11 2389999999999999999999999999732 21 2377888888765 34
Q ss_pred c-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEec
Q 017179 209 M-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGC 285 (376)
Q Consensus 209 i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGl 285 (376)
+ .+.+.+-.+. ..+.+..|+++|++.+++++++.+ +.|+.++ ++..+++.++.|+.+++. |+ .++.++++--
T Consensus 136 i~~i~itTNG~l-L~~~~~~L~~aGld~VnISLDsl~~e~~~~it-r~~~~~~vl~~I~~a~~~---G~~~vkin~vv~~ 210 (373)
T PLN02951 136 LKTLAMTTNGIT-LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT-RRKGHDRVLESIDTAIEL---GYNPVKVNCVVMR 210 (373)
T ss_pred CceEEEeeCcch-HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh-cCCCHHHHHHHHHHHHHc---CCCcEEEEEEecC
Confidence 4 3444443221 246689999999999999999874 8899998 567899999999999984 55 5777777666
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
|++++|+.+.++++++.++++- +..|+..
T Consensus 211 g~N~~Ei~~li~~a~~~gi~vr-~ie~mP~ 239 (373)
T PLN02951 211 GFNDDEICDFVELTRDKPINVR-FIEFMPF 239 (373)
T ss_pred CCCHHHHHHHHHHHHhCCCeEE-EEEcccC
Confidence 9999999999999999997643 4366644
No 76
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.58 E-value=6.7e-14 Score=139.71 Aligned_cols=206 Identities=10% Similarity=0.132 Sum_probs=145.4
Q ss_pred CccCCCCcCCCCCCCCCCCCC---CchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CC
Q 017179 137 DTCTRGCRFCNVKTSRAPPPP---DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PN 208 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~~l---~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~ 208 (376)
--|+..|.||.+........+ ..+.+.++++...+ .+++.|.|.||+..-++ .+++.++++.|++.. ++
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~---~~~l~~ll~~i~~~~~~~ 84 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVS---AKFYEPIFEIISPYLSKD 84 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHHhcCCC
Confidence 469999999998764211112 23444444443222 36789999888755454 466777777777643 23
Q ss_pred --cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEe
Q 017179 209 --MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLG 284 (376)
Q Consensus 209 --i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvG 284 (376)
+.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.++.++.++.++.+++ .|+. +..++|+|
T Consensus 85 ~eitiE~-nP~~~-~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg-R~~~~~~~~~ai~~lr~---~g~~~v~iDli~G 158 (350)
T PRK08446 85 CEITTEA-NPNSA-TKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG-RIHSQKQIIKAIENAKK---AGFENISIDLIYD 158 (350)
T ss_pred ceEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCEEEEEeecC
Confidence 44453 45432 789999999999999999999864 9999998 89999999999999999 4674 88999999
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCccc----CCh-HHHHHHHHHHHHHhhhhhccchhHh
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEY----ITP-EAFERYRALGMEMGFRYVASGPMVR 353 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~----v~p-e~~~~l~~~a~~~gf~~~~sgp~vr 353 (376)
+ |||.+++.++++++.+++++.+.+..+. | ..++++.+. +.. +-+....+...+.||....-.=+.|
T Consensus 159 lPgqt~~~~~~~l~~~~~l~~~~is~y~L~-~-~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~fa~ 231 (350)
T PRK08446 159 TPLDNKKLLKEELKLAKELPINHLSAYSLT-I-EENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGK 231 (350)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEeccce-e-cCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehhhC
Confidence 9 9999999999999999999999986653 3 123443221 122 2344455666677886553323555
No 77
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.58 E-value=1.3e-13 Score=142.14 Aligned_cols=174 Identities=17% Similarity=0.286 Sum_probs=133.5
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCC---CchhHHHHHHHHHH-----CCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPP---DPDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l---~~eEi~~~a~al~~-----~G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
.-|+-+ .-|+..|.||.+....+. ... ..+.++++++.+.. .+++.|.|.||+...++ .+++.++++
T Consensus 51 ~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~---~~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLS---PEQISRLMK 126 (455)
T ss_pred EEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCC---HHHHHHHHH
Confidence 344433 579999999999864321 122 23444444444432 37889999998754443 567888999
Q ss_pred HHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.++ + +.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++ .|
T Consensus 127 ~i~~~~~~~~~~eitie~-np~~l-~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~~~~~~~ai~~l~~---~G 200 (455)
T TIGR00538 127 LIRENFPFNADAEISIEI-DPRYI-TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQPEEMIFELMNHARE---AG 200 (455)
T ss_pred HHHHhCCCCCCCeEEEEe-ccCcC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---cC
Confidence 9987653 2 34443 34332 789999999999999999999875 9999999 78999999999999999 46
Q ss_pred ce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 275 TL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 275 i~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+. +..++|+|+ |+|.+++.++++++.+++++.+.+..+.
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~ 241 (455)
T TIGR00538 201 FTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYA 241 (455)
T ss_pred CCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 74 799999999 9999999999999999999999987763
No 78
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.57 E-value=1.7e-13 Score=141.20 Aligned_cols=175 Identities=17% Similarity=0.231 Sum_probs=133.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CC---CchhHHHHHHHHH-----HCCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PP---DPDEPTNVAEAIA-----SWGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l---~~eEi~~~a~al~-----~~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|+..|.||.+....... .. ..+.+.++++.++ ..+++.|.|.||+..-++ ...+.+++
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~---~~~l~~ll 125 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLS---PEQLRRLM 125 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCC---HHHHHHHH
Confidence 3444444 5799999999987642211 12 1233444444332 235789999998754443 46788889
Q ss_pred HHHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.++ + +.+++ .|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.+++++.++.++.+++ .
T Consensus 126 ~~l~~~~~~~~~~e~tie~-np~~l-t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~~~~~~~ai~~l~~---~ 199 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEI-DPREL-DLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQPFEFTFALVEAARE---L 199 (453)
T ss_pred HHHHHhCCCCCCCEEEEEe-cCCcC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 88887653 2 34443 45433 789999999999999999999765 9999999 89999999999999999 4
Q ss_pred Cc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 GT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|+ .+..++|+|+ |||.+++.++++++.+++++.+.+..+.
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 200 GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 67 7899999999 9999999999999999999999997765
No 79
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.57 E-value=1.6e-13 Score=137.35 Aligned_cols=168 Identities=11% Similarity=0.215 Sum_probs=125.8
Q ss_pred CccCCCCcCCCCCCCCCCC-CC--CchhHHHHHHH-HHHCC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---
Q 017179 137 DTCTRGCRFCNVKTSRAPP-PP--DPDEPTNVAEA-IASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--- 206 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~~-~l--~~eEi~~~a~a-l~~~G---~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--- 206 (376)
--|+..|.||.+....... .. -.+.+.++++. +...| ++.|.+.||+..-++ .+.+.++++.|++..
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~---~~~l~~ll~~i~~~~~~~ 84 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLS---VEAFERLFESIYQHASLS 84 (360)
T ss_pred CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCC---HHHHHHHHHHHHHhCCCC
Confidence 3699999999988642111 11 01222222222 23344 789999998754443 456777777776544
Q ss_pred CC--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEE
Q 017179 207 PN--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIM 282 (376)
Q Consensus 207 p~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~im 282 (376)
++ +.+++ -|+.. +.+.++.|+++|++.+..++|+.+ ++++.|+ |.+++++.++.++.+++ .|+ .+..++|
T Consensus 85 ~~~eitie~-np~~l-t~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg-R~~~~~~~~~ai~~l~~---~G~~~v~~dli 158 (360)
T TIGR00539 85 DDCEITTEA-NPELI-TAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG-RQHSAKNIAPAIETALK---SGIENISLDLM 158 (360)
T ss_pred CCCEEEEEe-CCCCC-CHHHHHHHHHcCCCEEEEecccCChHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeEEEecc
Confidence 23 34443 45443 789999999999999999999875 9999997 89999999999999999 477 4899999
Q ss_pred Eec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 283 LGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 283 vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+|+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 190 (360)
T TIGR00539 159 YGLPLQTLNSLKEELKLAKELPINHLSAYALS 190 (360)
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCEEEeecce
Confidence 999 9999999999999999999999986653
No 80
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.56 E-value=1.9e-13 Score=140.06 Aligned_cols=213 Identities=14% Similarity=0.182 Sum_probs=148.3
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCC-CC---CchhHHHHHHHHHHC----CCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPP-PP---DPDEPTNVAEAIASW----GLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~-~l---~~eEi~~~a~al~~~----G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
..-|+-+ --|+..|.||.+....+.. .. ..+.++++++.+.+. .+..|.|-||+.--++ .+++.++++
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~---~~~l~~Ll~ 115 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLN---AAELEKLFD 115 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCC---HHHHHHHHH
Confidence 5566655 5799999999987642111 11 234455555544422 2567777666533233 567888888
Q ss_pred HHHhhCC----C--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 201 KLKELKP----N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 201 ~Ik~~~p----~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
.|++.++ . +.+++ .|+.. +++.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .
T Consensus 116 ~i~~~~~~~~~~~eitiE~-~P~~l-t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~~~~~~~~~ai~~l~~---~ 189 (430)
T PRK08208 116 SVERVLGVDLGNIPKSVET-SPATT-TAEKLALLAARGVNRLSIGVQSFHDSELHALH-RPQKRADVHQALEWIRA---A 189 (430)
T ss_pred HHHHhCCCCCCCceEEEEe-CcCcC-CHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---c
Confidence 8876653 1 33343 35433 78999999999999999999987 59999998 89999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCCh--HH----HHHHHHHHHHHhhhh
Q 017179 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP--EA----FERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~p--e~----~~~l~~~a~~~gf~~ 345 (376)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..+. + ..++++.+...+ +. ++...+.-.+.||..
T Consensus 190 g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~-~-~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~ 267 (430)
T PRK08208 190 GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLY-V-RPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ 267 (430)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEcccc-c-cCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 675 689999999 9999999999999999999999997653 3 234555443332 22 333344455668766
Q ss_pred hccchhHh
Q 017179 346 VASGPMVR 353 (376)
Q Consensus 346 ~~sgp~vr 353 (376)
...+=++|
T Consensus 268 yei~~far 275 (430)
T PRK08208 268 TSMRMFRR 275 (430)
T ss_pred Eeecceec
Confidence 54444444
No 81
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.56 E-value=2.1e-13 Score=132.92 Aligned_cols=169 Identities=16% Similarity=0.301 Sum_probs=132.3
Q ss_pred EeeeCCccCCCCcCCCCCCCCCC--CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAP--PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~--~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
.+.+++.|+.+|.||........ ..++.+|+.+.++.+...|++.|.||||+.--.++ +.++++.+++. ++
T Consensus 13 ~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~-----l~~iv~~l~~~--g~ 85 (302)
T TIGR02668 13 RISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKD-----LIEIIRRIKDY--GI 85 (302)
T ss_pred EEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccC-----HHHHHHHHHhC--CC
Confidence 45679999999999987643222 24899999999999999999999999997322222 67788888764 23
Q ss_pred -EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecC
Q 017179 210 -LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCG 286 (376)
Q Consensus 210 -~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlG 286 (376)
.+.+.+-... ..+.+..|+++|++.+++++|+.+ +.|+.++ ++.++++.++.++.+++ .|+. ++..+++--|
T Consensus 86 ~~v~i~TNG~l-l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~-~~~~~~~vl~~i~~~~~---~G~~~v~i~~v~~~g 160 (302)
T TIGR02668 86 KDVSMTTNGIL-LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKIT-GRGALDRVIEGIESAVD---AGLTPVKLNMVVLKG 160 (302)
T ss_pred ceEEEEcCchH-HHHHHHHHHHCCCCEEEEEecCCCHHHhhhcc-CCCcHHHHHHHHHHHHH---cCCCcEEEEEEEeCC
Confidence 5555553221 356788899999999999999875 8999998 57899999999999999 4664 7777776558
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++++++.+.+++++++++++ .+..|+
T Consensus 161 ~n~~ei~~~~~~~~~~g~~~-~~ie~~ 186 (302)
T TIGR02668 161 INDNEIPDMVEFAAEGGAIL-QLIELM 186 (302)
T ss_pred CCHHHHHHHHHHHHhcCCEE-EEEEEe
Confidence 99999999999999999974 444555
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.55 E-value=3.3e-13 Score=139.11 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=133.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC-CCCCC---chhHHHHHHHHHH-----CCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRA-PPPPD---PDEPTNVAEAIAS-----WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~-~~~l~---~eEi~~~a~al~~-----~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ .-|+..|.||.+..... ..... .+.++++++.... .++..|.|.||+..-++ ..++.+++
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---~~~l~~ll 126 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---PDQFERLM 126 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC---HHHHHHHH
Confidence 3445544 45999999999875321 11111 2333333333222 35789999998755444 46789999
Q ss_pred HHHHhhCC---C--cEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP---N--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p---~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.++ + +.++ ..|+.. +++.++.|+++|++.+..++|+.+ ++++.++ |.++.++.++.++.+++ .
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~l-t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~-R~~~~~~~~~ai~~lr~---~ 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTV-TAEMLQALAALGFNRASFGVQDFDPQVQKAIN-RIQPEEMVARAVELLRA---A 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccC-CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---c
Confidence 99988653 2 3444 345433 789999999999999999999765 9999999 88999999999999999 4
Q ss_pred Cce-EEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 GTL-TKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 Gi~-tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
|+. +..++|+|+ |+|.+++.++++.+.+++++.+.+..|.
T Consensus 201 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 201 GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 675 899999999 9999999999999999999999998774
No 83
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.55 E-value=1.5e-13 Score=141.48 Aligned_cols=175 Identities=16% Similarity=0.260 Sum_probs=133.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCC---CCchhHHHHHHHHHH------CCCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS------WGLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~---l~~eEi~~~a~al~~------~G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|...|.||.+.+...... .-.+.++++++...+ ..++.|.|-||+...++ .+.+.+++
T Consensus 62 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~---~~~l~~ll 137 (449)
T PRK09058 62 RLLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALS---AEDLARLI 137 (449)
T ss_pred eEEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCC---HHHHHHHH
Confidence 4555544 46999999999875311111 233455555555443 23567777676655454 56788888
Q ss_pred HHHHhhCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 200 RKLKELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 200 r~Ik~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.|++.+| .+.+++-...+ +.+.++.++++|++.+..++|+.+ ++++.|+ |.++.++.++.++.+++.
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~--t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~~~~~~~~~i~~l~~~--- 211 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGF--DDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKDDREEVLARLEELVAR--- 211 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcC--CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHhC---
Confidence 88888764 24455433344 789999999999999999999764 9999999 899999999999999994
Q ss_pred C-ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 274 G-TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 274 G-i~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
| ..+..++|+|+ |||.+++.++++++.+++++.|.+.++.
T Consensus 212 g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~ 253 (449)
T PRK09058 212 DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALN 253 (449)
T ss_pred CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 5 57999999999 9999999999999999999999987763
No 84
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.54 E-value=3.8e-13 Score=136.65 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=127.3
Q ss_pred CccCCCCcCCCCCCCC-CCC--CCCc-------hhHHHHHHHHHH--CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 137 DTCTRGCRFCNVKTSR-APP--PPDP-------DEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r-~~~--~l~~-------eEi~~~a~al~~--~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
--|...|.||.++... +.. ..+. +.+.++++.... .+++.|.|-||+..-++ .+++.++++.|++
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~---~~~l~~ll~~i~~ 94 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLS---VEQLERILTTLDQ 94 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCC---HHHHHHHHHHHHH
Confidence 4799999999997531 110 1111 223333332222 24678888777654443 5778889988887
Q ss_pred hCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-E
Q 017179 205 LKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-T 277 (376)
Q Consensus 205 ~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-t 277 (376)
.++ .+.+++ .|+-. +.+.++.|+++|++.+..++|+. +++++.|+ |+++.++.++.++.+++ .|+. +
T Consensus 95 ~~~~~~~~eit~E~-~P~~l-t~e~l~~l~~~GvnrislGvQS~~d~~L~~l~-R~~~~~~~~~ai~~l~~---~G~~~v 168 (400)
T PRK07379 95 RFGIAPDAEISLEI-DPGTF-DLEQLQGYRSLGVNRVSLGVQAFQDELLALCG-RSHRVKDIFAAVDLIHQ---AGIENF 168 (400)
T ss_pred hCCCCCCCEEEEEe-CCCcC-CHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCCeE
Confidence 653 244443 44332 78999999999999999999976 49999999 89999999999999999 4776 8
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.++|+|+ |||.+++.++++.+.+++++.|.+..+.
T Consensus 169 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 169 SLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 99999999 9999999999999999999999987553
No 85
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=9.1e-13 Score=133.61 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=129.7
Q ss_pred CccCCCCcCCCCCCCCCC-C-CC----CchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 137 DTCTRGCRFCNVKTSRAP-P-PP----DPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~~-~-~l----~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
--|...|.||.+...... . .. =.+.+.+.++.... ..++-|.|-||+..-++ .+.+.++++.|++.+
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~---~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLS---AAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCC---HHHHHHHHHHHHHhC
Confidence 469999999999864211 1 11 12344444443322 23678888888766555 567889999998877
Q ss_pred CC-----cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 PN-----MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 p~-----i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
|. +.+++ .|+.. +.+.++.|+++|++.+..++|+. +++++.|+ |.++.++..++++.+++. +..+..+
T Consensus 104 ~~~~~~eit~E~-~p~~~-~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~-R~~~~~~~~~~i~~~~~~---~~~v~~d 177 (394)
T PRK08898 104 PLDPDAEITLEA-NPGTF-EAEKFAQFRASGVNRLSIGIQSFNDAHLKALG-RIHDGAEARAAIEIAAKH---FDNFNLD 177 (394)
T ss_pred CCCCCCeEEEEE-CCCCC-CHHHHHHHHHcCCCeEEEecccCCHHHHHHhC-CCCCHHHHHHHHHHHHHh---CCceEEE
Confidence 42 44454 34432 68999999999999999999976 59999998 899999999999999984 3468999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+|+|+ |+|.+++.++++.+.+++++.|.+..+.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~ 211 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLT 211 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeE
Confidence 99999 9999999999999999999999987764
No 86
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=7.5e-13 Score=133.59 Aligned_cols=173 Identities=12% Similarity=0.148 Sum_probs=133.0
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCC---CCchhHHHHHHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPP---PDPDEPTNVAEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~---l~~eEi~~~a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
-|+-+ --|...|.||.+.+...... .-.+.+.++++...+ ..++.|.|.||+..-++ .+.+.++++.|+
T Consensus 7 lYiHI-PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~L~~ll~~i~ 82 (380)
T PRK09057 7 LYVHW-PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQ---PETVAALLDAIA 82 (380)
T ss_pred EEEEe-CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCC---HHHHHHHHHHHH
Confidence 34433 46999999999986421111 112334444443332 34788988888765554 567888999998
Q ss_pred hhCC-----CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELKP-----NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~p-----~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+.+| .+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.|+ |+++.++..+.++.+++. +..+
T Consensus 83 ~~f~~~~~~eit~E~~P~~i--~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~-R~~~~~~~~~ai~~~~~~---~~~v 156 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSV--EAGRFRGYRAAGVNRVSLGVQALNDADLRFLG-RLHSVAEALAAIDLAREI---FPRV 156 (380)
T ss_pred HhCCCCCCccEEEEECcCcC--CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---CccE
Confidence 8653 24555533344 789999999999999999999765 9999999 899999999999999994 4679
Q ss_pred EEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 278 KTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..++|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 99999999 9999999999999999999999987664
No 87
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.51 E-value=8.8e-13 Score=129.54 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=134.3
Q ss_pred EEEEe--eeCCccCCCCcCCCCCC-C-CCCC--CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIM--ILGDTCTRGCRFCNVKT-S-RAPP--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m--~i~d~C~~~C~FC~v~~-~-r~~~--~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
..+++ .++|.|+.+|.||...- . -.|. .+++||+.+.++...+.|++.|.||||+.- +. ..+.++|+.|
T Consensus 9 ~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPl-lR----~dl~eIi~~l 83 (322)
T COG2896 9 PVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPL-LR----KDLDEIIARL 83 (322)
T ss_pred EeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCch-hh----cCHHHHHHHH
Confidence 55665 36899999999999876 2 1232 489999999999999999999999999731 21 1266788888
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEe
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTS 280 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~ 280 (376)
++. .--.|.+-+-.+. -....+.|++||++.++..+++.+ +.|.+|. +...+++.++-|+.|.+ .|+ ++|-+
T Consensus 84 ~~~-~~~~islTTNG~~-L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT-~~~~~~~Vl~GI~~A~~---~Gl~pVKlN 157 (322)
T COG2896 84 ARL-GIRDLSLTTNGVL-LARRAADLKEAGLDRVNVSLDSLDPEKFRKIT-GRDRLDRVLEGIDAAVE---AGLTPVKLN 157 (322)
T ss_pred hhc-ccceEEEecchhh-HHHHHHHHHHcCCcEEEeecccCCHHHHHHHh-CCCcHHHHHHHHHHHHH---cCCCceEEE
Confidence 764 1112332221111 356789999999999999999886 9999999 56669999999999999 578 49999
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
++|==|-+++|+.+.+++.++.+++. .|-.||.
T Consensus 158 ~Vv~kgvNd~ei~~l~e~~~~~~~~l-rfIE~m~ 190 (322)
T COG2896 158 TVLMKGVNDDEIEDLLEFAKERGAQL-RFIELMP 190 (322)
T ss_pred EEEecCCCHHHHHHHHHHHhhcCCce-EEEEEee
Confidence 98877999999999999999999843 3335553
No 88
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.49 E-value=7.8e-12 Score=125.70 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=133.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
...++.+++.|+.+|.||..... +....++.+++.+.++.+.+.|+..|.||||+---.+ .|.++++.+++.
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~il~~~~~~- 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRK-----DLEELVAHAREL- 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCch-----hHHHHHHHHHHc-
Confidence 55566789999999999986532 2223589999999999999999999999999742222 377889888764
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
++.+.+.+--..-+++.++.|+++|++.+...+++. ++.+..++..+.+|++.++.++.+++ .|+.+...+++ .
T Consensus 90 -g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~---~g~~v~i~~vv-~ 164 (378)
T PRK05301 90 -GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKA---HGYPLTLNAVI-H 164 (378)
T ss_pred -CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHH---CCCceEEEEEe-e
Confidence 355555554332267889999999999999999986 58899998444589999999999998 46655444433 3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 286 GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
..+.+++.+.++++.+++++.+.+.
T Consensus 165 ~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 165 RHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7899999999999999999988874
No 89
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.49 E-value=3.1e-12 Score=126.12 Aligned_cols=198 Identities=16% Similarity=0.278 Sum_probs=139.7
Q ss_pred cEEEEeeeCCccCC----CCcCCCCCCCCCCCCCCchhHHHHHHHHHH-CCCcE-----EEEEeee---CCCCCcccHHH
Q 017179 128 ATATIMILGDTCTR----GCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WGLDY-----VVITSVD---RDDLADQGSGH 194 (376)
Q Consensus 128 ~tat~m~i~d~C~~----~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~G~~e-----IvLTsg~---r~dl~d~g~~~ 194 (376)
.+.+++..+.||+. +|.||++.... ....+++++.+.++.+.+ .+.++ -++|+|. ...++ .+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~---~~~ 89 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP---KET 89 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC---HHH
Confidence 35566777999999 69999866432 123688888888777654 34332 2356662 22233 456
Q ss_pred HHHHHHHHHhhCC--CcEEEEecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHH-hhcCCCCCHHHHHHHHHHHHH
Q 017179 195 FAQTVRKLKELKP--NMLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQS-AVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 195 ~~elvr~Ik~~~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv-~~l~~-~vr~r~~t~e~~L~vl~~ak~ 269 (376)
+.++++.|++... .+.+++ -|+.. +++.|+.|+++|.+ .+..++|+. +++++ .|+ ++++.++..++++.+++
T Consensus 90 ~~~i~~~l~~~~~~~~i~~es-rpd~i-~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg~t~~~~~~ai~~~~~ 166 (313)
T TIGR01210 90 RNYIFEKIAQRDNLKEVVVES-RPEFI-DEEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KGSTFEDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHHhcCCcceEEEEe-CCCcC-CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CCCCHHHHHHHHHHHHH
Confidence 7788888876321 234443 56654 78999999999998 699999985 59995 798 89999999999999999
Q ss_pred hCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCc------ccCCh---HHHHHHH
Q 017179 270 YVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVS------EYITP---EAFERYR 335 (376)
Q Consensus 270 ~~p~Gi~tkt~imvGl-GE----T~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~------~~v~p---e~~~~l~ 335 (376)
.|+.++.++|+|+ |+ +.+++.++++.+.+++ +.+.+.+. .| .+++++. .|.+| ...+.|+
T Consensus 167 ---~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l-~v-~~gT~l~~~~~~G~~~pp~lws~~e~l~ 240 (313)
T TIGR01210 167 ---YGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPT-NV-QKGTLVEFLWNRGLYRPPWLWSVAEVLK 240 (313)
T ss_pred ---cCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECC-EE-eCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5899999999999 64 5567778999999998 88887533 23 2344432 23445 4556666
Q ss_pred HHH
Q 017179 336 ALG 338 (376)
Q Consensus 336 ~~a 338 (376)
+..
T Consensus 241 e~~ 243 (313)
T TIGR01210 241 EAK 243 (313)
T ss_pred HHH
Confidence 664
No 90
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.49 E-value=5.4e-13 Score=134.21 Aligned_cols=174 Identities=13% Similarity=0.236 Sum_probs=128.0
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCC-CCCC--chhHHHH-HHHHHH----CCCcEEEEEeeeCCCCCcccHHHHHHHHHH
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAP-PPPD--PDEPTNV-AEAIAS----WGLDYVVITSVDRDDLADQGSGHFAQTVRK 201 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~-~~l~--~eEi~~~-a~al~~----~G~~eIvLTsg~r~dl~d~g~~~~~elvr~ 201 (376)
.-|+-+ --|...|.||.+...... ...+ .+.+.++ .+.... ..++.|.+.||+..-++ .+.+.++++.
T Consensus 8 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~---~~~l~~ll~~ 83 (370)
T PRK06294 8 ALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVP---PALIQDILKT 83 (370)
T ss_pred EEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCC---HHHHHHHHHH
Confidence 444443 579999999998764211 1111 1112222 221221 23577888888765444 4678888888
Q ss_pred HHhh-CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-EE
Q 017179 202 LKEL-KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-TK 278 (376)
Q Consensus 202 Ik~~-~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-tk 278 (376)
|++. ...+.+++ .|+.. +.+.++.|+++|++.+..++|+.+ ++++.++ |+++.++.++.++.+++ .|+. ++
T Consensus 84 i~~~~~~eit~E~-~P~~~-~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~-R~~~~~~~~~ai~~~~~---~g~~~v~ 157 (370)
T PRK06294 84 LEAPHATEITLEA-NPENL-SESYIRALALTGINRISIGVQTFDDPLLKLLG-RTHSSSKAIDAVQECSE---HGFSNLS 157 (370)
T ss_pred HHhCCCCeEEEEe-CCCCC-CHHHHHHHHHCCCCEEEEccccCCHHHHHHcC-CCCCHHHHHHHHHHHHH---cCCCeEE
Confidence 8653 12456654 44432 789999999999999999999765 9999999 89999999999999999 4674 89
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.++|+|+ |||.+++.++++.+.+++++.+.+..+.
T Consensus 158 ~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 193 (370)
T PRK06294 158 IDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLT 193 (370)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeE
Confidence 9999999 9999999999999999999999886664
No 91
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.47 E-value=5.5e-13 Score=131.51 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=140.4
Q ss_pred EEEeeeCCccCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p 207 (376)
.-++.+.-+|-+.|.||--+..++.. +.+++++++.++..-+.|+.+|.+|+-|...+ .|-| ..+..++.++.+..|
T Consensus 188 ieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig-~slp~ll~klv~~iP 266 (547)
T KOG4355|consen 188 IEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG-KSLPKLLWKLVEVIP 266 (547)
T ss_pred eEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh-hhhHHHHHHHHHhcc
Confidence 34566788999999999988877654 58999999999999999999999999874433 2223 235666777766666
Q ss_pred C---cEEEEecCCCCCChHHHHHHHH--cCccccccc---cc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 208 N---MLIEALVPDFRGNNGCVREVAK--SGLNVFAHN---IE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 208 ~---i~Ie~l~pd~~g~~e~l~~L~~--aGld~i~h~---lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
. +++..-.|.+ -.+.+..++. -.+.+|... ++ .++.++-.|+ |-+...++-.+.+.+.+..|+ +.+.
T Consensus 267 e~cmlr~gmTnpP~--ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emk-reyc~~dfk~Vvd~LterVPg-i~IA 342 (547)
T KOG4355|consen 267 ESCMLRAGMTNPPY--ILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMK-REYCNFDFKIVVDFLTERVPG-ITIA 342 (547)
T ss_pred hhhhhhhcCCCCch--HHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHH-HHHhhhhHHHHHHHHHhhCCC-cEEe
Confidence 2 3333333433 2344443332 123444332 34 6789999999 888889999999999999985 9999
Q ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CCCCCCCCCcc
Q 017179 279 TSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RPSKRHMPVSE 324 (376)
Q Consensus 279 t~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~~~~~~v~~ 324 (376)
|+||.|| |||+|||.++|+.+++..+-.+.|.||+ ||+....++..
T Consensus 343 TDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkk 390 (547)
T KOG4355|consen 343 TDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKK 390 (547)
T ss_pred eeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhc
Confidence 9999999 9999999999999999999999999998 55433333433
No 92
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.45 E-value=2.7e-12 Score=130.06 Aligned_cols=174 Identities=10% Similarity=0.154 Sum_probs=130.0
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCc----hhHHHHHHHHH----HCCCcEEEEEeeeCCCCCcccHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDP----DEPTNVAEAIA----SWGLDYVVITSVDRDDLADQGSGHFAQTVR 200 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~----eEi~~~a~al~----~~G~~eIvLTsg~r~dl~d~g~~~~~elvr 200 (376)
..-|+-+ --|...|.||.+.+..... ... +-+.++++... ...++.|.|.||+..-++ .+.+.++++
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~---~~~l~~ll~ 86 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMN---PVIVEGIIN 86 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCC---HHHHHHHHH
Confidence 3444433 5899999999997642111 111 11222222222 234788999888765444 466777888
Q ss_pred HHHhhC--C---CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCC
Q 017179 201 KLKELK--P---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 201 ~Ik~~~--p---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G 274 (376)
.|++.+ + .+.+++-..++ +.+.++.|+++|++.+..++|+.+ ++++.+. |.++.++.++.++.+++. +
T Consensus 87 ~i~~~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~---~ 160 (390)
T PRK06582 87 KISNLAIIDNQTEITLETNPTSF--ETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG-RTHDCMQAIKTIEAANTI---F 160 (390)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcC--CHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC-CCCCHHHHHHHHHHHHHh---C
Confidence 887753 2 35566533234 789999999999999999999764 9999999 899999999999999984 3
Q ss_pred ceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 275 TLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 275 i~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..++.++|+|+ |+|.+++.++++.+.+++++.|.+.++.
T Consensus 161 ~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~ 200 (390)
T PRK06582 161 PRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLT 200 (390)
T ss_pred CcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCE
Confidence 56999999999 9999999999999999999999987664
No 93
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.43 E-value=2.1e-12 Score=131.72 Aligned_cols=190 Identities=20% Similarity=0.259 Sum_probs=131.9
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc--HHHHHHHHH-HHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG--SGHFAQTVR-KLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g--~~~~~elvr-~Ik~~ 205 (376)
....+.++.||+++|+||.+.........+++.+++.++.+.+.|++.+.+..++.-.+...+ .....+++. .+.+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLELIER 277 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHHHHHH
Confidence 466777899999999999998642123577888888888888888877664444321111100 112233332 23322
Q ss_pred C-C-CcEEEEec----CCCCCChHHHHHHHHcCcccccccccc-hHHHHHhhcCCCCCHHHHHH-HHHHHHHhCCCCceE
Q 017179 206 K-P-NMLIEALV----PDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLD-VLMMAKDYVPAGTLT 277 (376)
Q Consensus 206 ~-p-~i~Ie~l~----pd~~g~~e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~-vl~~ak~~~p~Gi~t 277 (376)
. + .-.+.... +|...+++.+..+..+|...+..++|+ ++++++.++ ++.+.++.++ .++.+++ .|+.+
T Consensus 278 ~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~-k~~~~~~~~~~a~~~~~~---~~~~~ 353 (490)
T COG1032 278 GLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN-KGITTEEVLEEAVKIAKE---HGLRV 353 (490)
T ss_pred hcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh-CCCChHHHHHHHHHHHHh---CCcee
Confidence 2 1 11223333 344323778888999999999999996 469999999 8999999995 9999988 57889
Q ss_pred EEeEEEec-CCCHHHHHHH---HHHHHHcCCc-EEEeecCCCCCCCCCCCcc
Q 017179 278 KTSIMLGC-GETPDQVVST---MEKVRAAGVD-VMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 278 kt~imvGl-GET~ee~~e~---L~~Lrel~vd-~v~~~qY~~P~~~~~~v~~ 324 (376)
+.++|+|+ |||++|+.++ ++++++.+.. .+.+ .++.| ..+++...
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~-~~~~p-~p~t~~~~ 403 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP-SPFVP-LPGTPLQE 403 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEE-eeeeC-CCCCchhh
Confidence 99999999 9999999999 8899999986 5655 44566 44555444
No 94
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.43 E-value=3.2e-11 Score=124.14 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=149.1
Q ss_pred ccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCC-----CC---CCCCCchhHHHHHHHHHHC--CCcEEEEEe-eeCC
Q 017179 117 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTS-----RA---PPPPDPDEPTNVAEAIASW--GLDYVVITS-VDRD 185 (376)
Q Consensus 117 ~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~-----r~---~~~l~~eEi~~~a~al~~~--G~~eIvLTs-g~r~ 185 (376)
..||+...|...-.-.+.++.+|+.+|.||.-... +. ...++++|+++.++.+... +++.|.|+| |+.-
T Consensus 12 hpc~~~~~~~~~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPL 91 (442)
T TIGR01290 12 HPCYSVEAHHYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPL 91 (442)
T ss_pred CCCCChhhccCcCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 46887544444344457789999999999986532 21 1238999999999988764 678899998 7532
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhh----cCC--CCC--
Q 017179 186 DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAV----RDH--RAN-- 256 (376)
Q Consensus 186 dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~v----r~r--~~t-- 256 (376)
..+ +...++++.+++..|++.+.+.|-.+. .++.++.|++.|+|.+...+..++ +++.++ +.+ +++
T Consensus 92 l~~----e~~~~~l~~~~~~~~~i~i~lsTNG~~-l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~ 166 (442)
T TIGR01290 92 ANI----GKTFQTLELVARQLPDVKLCLSTNGLM-LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGR 166 (442)
T ss_pred cCc----cccHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCc
Confidence 212 235678888888888888887775543 478899999999999998888654 666654 111 111
Q ss_pred ------HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC-CCC-CCCCCCc--ccC
Q 017179 257 ------FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM-RPS-KRHMPVS--EYI 326 (376)
Q Consensus 257 ------~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~-~P~-~~~~~v~--~~v 326 (376)
++..++.|+.+.+ .|+.++..+++=-|.+++|+.+..+++++++++.+.+-+|. .|. ....++. +.+
T Consensus 167 ~~~~il~e~~l~~l~~l~~---~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~p 243 (442)
T TIGR01290 167 EAADLLIERQLEGLEKLTE---RGILVKVNSVLIPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREP 243 (442)
T ss_pred chHHHHHHHHHHHHHHHHh---CCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCc
Confidence 5566788888887 46766666665557788999999999999999888776664 231 0111222 345
Q ss_pred ChHHHHHHHHHHH
Q 017179 327 TPEAFERYRALGM 339 (376)
Q Consensus 327 ~pe~~~~l~~~a~ 339 (376)
++++++.+++...
T Consensus 244 s~e~l~~~~~~~~ 256 (442)
T TIGR01290 244 DPDELAALRDRLE 256 (442)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777766543
No 95
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.41 E-value=2e-11 Score=125.40 Aligned_cols=178 Identities=10% Similarity=0.143 Sum_probs=125.1
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CCCC--CCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR-APPP--PDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r-~~~~--l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
..-|+-+ --|...|.||.+.+.. .... .-.+.+.++++.+.+.|. ..|.|-||+ +.+. .+.+.++++.|+
T Consensus 53 ~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l---~~~L~~ll~~i~ 127 (433)
T PRK08629 53 YMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL---EDELAKTLELAK 127 (433)
T ss_pred EEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC---HHHHHHHHHHHH
Confidence 3444444 4699999999998632 1111 124666666666666553 455555554 3332 356888888888
Q ss_pred hhCCC--cEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 204 ELKPN--MLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 204 ~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
+.++- +.+++ .|+.. +++.++.|+++ ++.+..++|+. +++++.|+ |.+++.+..++++.+++....+..+..+
T Consensus 128 ~~f~i~eis~E~-~P~~l-t~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~g-R~h~~~~~~~~~~~l~~~~~~~~~v~~D 203 (433)
T PRK08629 128 KLFSIKEVSCES-DPNHL-DPPKLKQLKGL-IDRLSIGVQSFNDDILKMVD-RYEKFGSGQETFEKIMKAKGLFPIINVD 203 (433)
T ss_pred HhCCCceEEEEe-CcccC-CHHHHHHHHHh-CCeEEEecCcCCHHHHHHcC-CCCChhHHHHHHHHHHHHhccCCeEEEE
Confidence 77642 44443 55543 78999999999 99999999976 59999998 8887766644444444431122347999
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
+|+|| |||.+++.++++.+.+++++.|++.+++ .|
T Consensus 204 lI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~ 240 (433)
T PRK08629 204 LIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSH 240 (433)
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceecc
Confidence 99999 9999999999999999999999998775 44
No 96
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.41 E-value=4.5e-11 Score=119.18 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=131.1
Q ss_pred EEEeeeCCccCCCCcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 130 ATIMILGDTCTRGCRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 130 at~m~i~d~C~~~C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
..++.+++.|+.+|.||..... +....++.+++.+.++++.+.|+..|.||||+.--.+ +|.++++.+++.
T Consensus 8 ~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~-----~~~~ii~~~~~~-- 80 (358)
T TIGR02109 8 WLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARP-----DLVELVAHARRL-- 80 (358)
T ss_pred EEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCccccccc-----cHHHHHHHHHHc--
Confidence 3446689999999999986532 1123589999999999999999999999999743222 267888888775
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG 286 (376)
++.+.+.+-...-+++.++.|+++|++.+...+++.+ +.+.+++....++++.++.++.+++ .|+.+...+++ ..
T Consensus 81 g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~---~g~~v~v~~vv-~~ 156 (358)
T TIGR02109 81 GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKA---AGLPLTLNFVI-HR 156 (358)
T ss_pred CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHh---CCCceEEEEEe-cc
Confidence 3556656543333688999999999999999999874 8888888434579999999999998 46655443333 27
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+.+++.+.++++++++++.+.+.
T Consensus 157 ~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 157 HNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999988763
No 97
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.29 E-value=3.8e-10 Score=102.60 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=115.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..++++.+++|+.+|+||..+... ....++++++.+.++.. ...++.|.|+||+.--.+ ++.++++.+++.
T Consensus 16 ~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~~-----~l~~li~~~~~~ 89 (191)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQA-----GLPDFLRKVREL 89 (191)
T ss_pred CeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCcH-----hHHHHHHHHHHC
Confidence 556667799999999999887421 11248888888877764 234789999998742212 277888888774
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcC-cccccccccchHHHHHhhcCCCCCHH-HHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFK-QSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ld~i~h~lEtv~~l~~~vr~r~~t~e-~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
++.+.+.+.-. .++.++.+.++| ++.+...++..++.+..+..+..+++ +.++.++.+++.... +.+.+.++-
T Consensus 90 --g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~~ 164 (191)
T TIGR02495 90 --GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVHR 164 (191)
T ss_pred --CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEeC
Confidence 56666655443 577888999988 58888888876666666653445665 899999999984222 345555555
Q ss_pred ecCCCHHHHHHHHHHHHHcC
Q 017179 284 GCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 284 GlGET~ee~~e~L~~Lrel~ 303 (376)
|.-. ++|+.+.++++++.+
T Consensus 165 ~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 165 GFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred CCCC-HHHHHHHHHHhccCC
Confidence 6633 779999999999887
No 98
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=113.45 Aligned_cols=202 Identities=18% Similarity=0.293 Sum_probs=135.0
Q ss_pred EEEEeeeC--CccCCCCcCCCCCCCCC--CCC-------CCchhHHHHHHHHHH-C-CCcEEEEEeeeCCCCCcccHHHH
Q 017179 129 TATIMILG--DTCTRGCRFCNVKTSRA--PPP-------PDPDEPTNVAEAIAS-W-GLDYVVITSVDRDDLADQGSGHF 195 (376)
Q Consensus 129 tat~m~i~--d~C~~~C~FC~v~~~r~--~~~-------l~~eEi~~~a~al~~-~-G~~eIvLTsg~r~dl~d~g~~~~ 195 (376)
+..|+..+ .+|..+|+||.+.++.. |+. +..-.+....+.+.. . .++.|+++-.+.+... ...
T Consensus 29 ~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~~~----~d~ 104 (339)
T COG2516 29 TTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPRAL----NDL 104 (339)
T ss_pred ceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeecccccc----chh
Confidence 44445445 89999999999987431 211 111111122222222 2 3588888877654321 124
Q ss_pred HHHHHHHHhhC-CCcEEE-EecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhc-CCC--CCHHHHHHHHHHHHH
Q 017179 196 AQTVRKLKELK-PNMLIE-ALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVR-DHR--ANFKQSLDVLMMAKD 269 (376)
Q Consensus 196 ~elvr~Ik~~~-p~i~Ie-~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr-~r~--~t~e~~L~vl~~ak~ 269 (376)
..+++.+.-.. -.+.|. ++++-- ..+.+...+..|.|.+...+|.++ ++|++|+ .-+ ++|++.++.|+.+..
T Consensus 105 ~~i~~~~~~~~~~~itiseci~~~~--~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~ 182 (339)
T COG2516 105 KLILERLHIRLGDPITISECITAVS--LKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAE 182 (339)
T ss_pred hhhhhhhhhccCCceehhhhhhccc--chHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 45666665221 123333 233321 267788999999999999999775 9999884 223 789999999999999
Q ss_pred hCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 270 YVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 270 ~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
.++.| .+..+++||+||||.++++++...+..+.-+--+. +-| .+++++..+.++ ..+++++++...
T Consensus 183 ~~~k~-rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfa--f~P-~~gt~me~r~~~-pve~Yrk~q~a~ 249 (339)
T COG2516 183 AFGKG-RVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFA--FTP-LKGTQMENRKPP-PVERYRKIQVAR 249 (339)
T ss_pred HhccC-CcceeEEeccCCchHHHHHHHHHHHhcCceEEEEE--ecc-cccccccCCCCC-cHHHHHHHHHHH
Confidence 99875 79999999999999999999999999987554443 347 578888776443 566666665554
No 99
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.26 E-value=9.5e-10 Score=108.66 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=123.1
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
-.+.+++.|+.+|.||.......+ ..++++++.+.++ +.|+..|.|+||+.--.+| +.++++.+++.
T Consensus 30 l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~pd-----l~eiv~~~~~~-- 99 (318)
T TIGR03470 30 LMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLHPE-----IDEIVRGLVAR-- 99 (318)
T ss_pred EEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccccc-----HHHHHHHHHHc--
Confidence 335679999999999976532211 2378888776544 5799999999997322233 66788888764
Q ss_pred CcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC
Q 017179 208 NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE 287 (376)
Q Consensus 208 ~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGE 287 (376)
+..+.+.+--.. -.+.+..++++|.+.+...++..++.+.+++.++.+|+..++.|+.+++ .|+.+...+.+=-++
T Consensus 100 g~~v~l~TNG~l-l~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~---~G~~v~v~~tv~~~~ 175 (318)
T TIGR03470 100 KKFVYLCTNALL-LEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKA---RGFRVTTNTTLFNDT 175 (318)
T ss_pred CCeEEEecCcee-hHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHH---CCCcEEEEEEEeCCC
Confidence 345555553222 2455788999998888888888776666665467899999999999998 467666655443479
Q ss_pred CHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 288 TPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 288 T~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.+++.+.++++.++|++.+.+.+.+
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 99999999999999999988885443
No 100
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.26 E-value=3e-10 Score=116.08 Aligned_cols=177 Identities=16% Similarity=0.295 Sum_probs=131.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCC-CC-CCCC--chhHHHHHHHHHHC-----CCcEEEEEeeeCCCCCcccHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSR-AP-PPPD--PDEPTNVAEAIASW-----GLDYVVITSVDRDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r-~~-~~l~--~eEi~~~a~al~~~-----G~~eIvLTsg~r~dl~d~g~~~~~elv 199 (376)
..-|+-+ --|...|.||.+.+.- .. .+.+ .+-+.++.+..... -++.|.+=||+..-+. .+.+..++
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~---~~~l~~ll 110 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLS---PEQLERLL 110 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCC---HHHHHHHH
Confidence 3444433 5899999999999632 11 1111 11222333333222 2567777666644443 46677777
Q ss_pred HHHHhhCC------CcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 017179 200 RKLKELKP------NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVP 272 (376)
Q Consensus 200 r~Ik~~~p------~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p 272 (376)
..|++.++ .+.||+-..++ +.+.++.++++|++++..++++.+ ++++.++ |.++.++..++++.+++.
T Consensus 111 ~~l~~~~~~~~~~~EitiE~nP~~~--~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg-R~h~~~~~~~a~~~~~~~-- 185 (416)
T COG0635 111 KALRELFNDLDPDAEITIEANPGTV--EAEKFKALKEAGVNRISLGVQSFNDEVLKALG-RIHDEEEAKEAVELARKA-- 185 (416)
T ss_pred HHHHHhcccCCCCceEEEEeCCCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhc-CCCCHHHHHHHHHHHHHc--
Confidence 77776662 35666633345 789999999999999999999765 9999999 999999999999999994
Q ss_pred CCc-eEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC-CC
Q 017179 273 AGT-LTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM-RP 315 (376)
Q Consensus 273 ~Gi-~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~-~P 315 (376)
|+ .++.++|+|+ |+|.+++.++++.+.++++|.|++.+|. -|
T Consensus 186 -g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p 230 (416)
T COG0635 186 -GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEP 230 (416)
T ss_pred -CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCC
Confidence 44 5899999999 9999999999999999999999999884 45
No 101
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.25 E-value=3.8e-10 Score=104.91 Aligned_cols=203 Identities=12% Similarity=0.142 Sum_probs=149.8
Q ss_pred cEEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeC--CCCCcccHHHHHHHHHHHHhh
Q 017179 128 ATATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDR--DDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 128 ~tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r--~dl~d~g~~~~~elvr~Ik~~ 205 (376)
++..+-+.|+.|..+|..|.-.......+.+..+++....++.+.|+.-++|+||.. .+.| ...|-+.++++|+.
T Consensus 10 k~~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VP---l~kf~d~lK~lke~ 86 (275)
T COG1856 10 KFISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP---LWKFKDELKALKER 86 (275)
T ss_pred CCceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCcc---HHHHHHHHHHHHHh
Confidence 466777889999999999987765545556668899999999999999999999963 3444 78899999999987
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
. ++.+.+=++-. +++.++.|+.+++|++..-+=..+++.++|-.-..+.+++++.++.+++ .|+.+--||++|+
T Consensus 87 ~-~l~inaHvGfv--dE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e---~~irvvpHitiGL 160 (275)
T COG1856 87 T-GLLINAHVGFV--DESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE---NGIRVVPHITIGL 160 (275)
T ss_pred h-CeEEEEEeeec--cHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH---cCceeceeEEEEe
Confidence 5 46665555433 6788999999999987654322334444443235688999999999999 5899999999999
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc--cCChHHHHHHHHHHHHH
Q 017179 286 -GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE--YITPEAFERYRALGMEM 341 (376)
Q Consensus 286 -GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~--~v~pe~~~~l~~~a~~~ 341 (376)
+-..+.=.+.++.|.+...|.+-+.-++ |+ .++++.. .+++++....-+.|++.
T Consensus 161 ~~gki~~e~kaIdiL~~~~~DalVl~vli-Pt-pGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 161 DFGKIHGEFKAIDILVNYEPDALVLVVLI-PT-PGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred ccCcccchHHHHHHHhcCCCCeEEEEEEe-cC-CchhccCCCCcCHHHHHHHHHHHHHh
Confidence 5555666788999999999976664334 53 3455443 34556666666666653
No 102
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.25 E-value=9.2e-10 Score=103.28 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=130.8
Q ss_pred EEeeeCCccCCCCcCCCCCCCC-C--CCCCCchhHHHHHHHHHHCC---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 131 TIMILGDTCTRGCRFCNVKTSR-A--PPPPDPDEPTNVAEAIASWG---LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r-~--~~~l~~eEi~~~a~al~~~G---~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.+++.+.+|+.+|.||...... . ...++++++.+.++.+...+ .+.|.||||+.- + . .+.+.++++.+++
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPl-l-~--~~~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPL-L-Q--PEFLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccc-c-C--HHHHHHHHHHHHH
Confidence 4557789999999999865321 1 12489999988887766542 258999998632 2 1 3345688998887
Q ss_pred hCCCcEEEEecCCCC-CChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 205 LKPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 205 ~~p~i~Ie~l~pd~~-g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
. ++.+.+.+..+. ...+.+..+.+ .+|.+...+++. ++.+.+++ + .++++.++.++.+++. |+.+...++
T Consensus 93 ~--g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~-g-~~~~~v~~~i~~l~~~---g~~~~v~~v 164 (235)
T TIGR02493 93 L--GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLT-G-VSLQPTLDFAKYLAKR---NKPIWIRYV 164 (235)
T ss_pred C--CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHH-C-CCcHHHHHHHHHHHhC---CCcEEEEEe
Confidence 4 455555554432 12456676666 467788888876 58888887 3 3899999999999984 555544444
Q ss_pred E--ecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCC--------CCCCCc--ccCChHHHHHHHHHHHH
Q 017179 283 L--GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK--------RHMPVS--EYITPEAFERYRALGME 340 (376)
Q Consensus 283 v--GlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~--------~~~~v~--~~v~pe~~~~l~~~a~~ 340 (376)
+ |..++.+|+.+..+++++++ +..+.+.+| +|.. ...+.. ..++.++.+++++++.+
T Consensus 165 v~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 165 LVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY-HQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred eeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC-CcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 4 44568899999999999999 567777444 3311 111111 22445667777776653
No 103
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.25 E-value=6.6e-10 Score=116.36 Aligned_cols=176 Identities=15% Similarity=0.232 Sum_probs=131.8
Q ss_pred cEEEEeeeCCccC-CCCcCCCC-------CC---CCCCCC--------CCchhHHHHHHHHHHCC--Cc--EEEEEeeeC
Q 017179 128 ATATIMILGDTCT-RGCRFCNV-------KT---SRAPPP--------PDPDEPTNVAEAIASWG--LD--YVVITSVDR 184 (376)
Q Consensus 128 ~tat~m~i~d~C~-~~C~FC~v-------~~---~r~~~~--------l~~eEi~~~a~al~~~G--~~--eIvLTsg~r 184 (376)
++++.|-----|+ ..|.||-- +. +..|.. -+..++...++++...| ++ |+.|-||+-
T Consensus 67 ~~v~vm~~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTf 146 (522)
T TIGR01211 67 AVVAVMTSPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTF 146 (522)
T ss_pred EEEEEecCCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCc
Confidence 4555553346899 57999953 11 112221 24577788888999887 33 558888886
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCC---------------------------cEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 185 DDLADQGSGHFAQTVRKLKELKPN---------------------------MLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 185 ~dl~d~g~~~~~elvr~Ik~~~p~---------------------------i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
..++ .++...+|+.+.+..++ +.|+ .-||.. +++.|+.|+++|.+.+.
T Consensus 147 t~l~---~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i-~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 147 PARD---LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYC-REEHIDRMLKLGATRVE 221 (522)
T ss_pred ccCC---HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcC-CHHHHHHHHHcCCCEEE
Confidence 6666 34444555554443322 2233 246655 78999999999999999
Q ss_pred ccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH---cCCcEEEeecC
Q 017179 238 HNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQY 312 (376)
Q Consensus 238 h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lre---l~vd~v~~~qY 312 (376)
.++|+.+ ++++.|+ |+++.++..+.++.+++ .|+.+..++|+|+ |||.+++.++++.+.+ +++|.+.+.+.
T Consensus 222 lGVQS~~d~VL~~in-Rght~~~v~~Ai~~lr~---~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl 297 (522)
T TIGR01211 222 LGVQTIYNDILERTK-RGHTVRDVVEATRLLRD---AGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPT 297 (522)
T ss_pred EECccCCHHHHHHhC-CCCCHHHHHHHHHHHHH---cCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecc
Confidence 9999764 9999999 89999999999999999 5899999999999 9999999999999985 89999998643
No 104
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.22 E-value=4.9e-10 Score=107.22 Aligned_cols=194 Identities=21% Similarity=0.312 Sum_probs=118.5
Q ss_pred ccHHHHHHHHhhc---Ch--hhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--C-CCc-h
Q 017179 90 DKYVQIKKKLREL---KL--HTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--P-PDP-D 160 (376)
Q Consensus 90 ~~~~~~~~~l~~~---~L--~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~--~-l~~-e 160 (376)
..|..+...|++. ++ .+|--...|||+.-..+ ..+|.||+...+.... + .+. +
T Consensus 6 k~y~t~~~~lr~~fg~Kv~Kv~ld~GF~CPNRDGti~------------------rGGCtFC~~~g~~d~~~~~~~~i~~ 67 (312)
T COG1242 6 KLYYTLNDYLREKFGEKVFKVTLDGGFSCPNRDGTIG------------------RGGCTFCSVAGSGDFAGQPKISIAE 67 (312)
T ss_pred hHHHHHHHHHHHHhCCeeEEEeccCCCCCCCCCCccc------------------CCceeeecCCCCCccccCcccCHHH
Confidence 3455555555533 22 34445678999974333 4579999887543111 1 233 3
Q ss_pred hHHHHHHHHH-HCCC-cEEE-EEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEec-CCCCCChHHHHHHHHcC--c
Q 017179 161 EPTNVAEAIA-SWGL-DYVV-ITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALV-PDFRGNNGCVREVAKSG--L 233 (376)
Q Consensus 161 Ei~~~a~al~-~~G~-~eIv-LTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~-pd~~g~~e~l~~L~~aG--l 233 (376)
++.+.++.+. +|+- +++. ++....- +.+ .+.+.+.-+..-.. ++ +-+.+-+ ||-. .++.++.|.+-. .
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNT-yAp--vevLre~ye~aL~~-~~VVGLsIgTRPDCl-pd~VldlL~e~~~r~ 142 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNT-YAP--VEVLREMYEQALSE-AGVVGLSIGTRPDCL-PDDVLDLLAEYNKRY 142 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccc-cCc--HHHHHHHHHHHhCc-CCeeEEeecCCCCCC-cHHHHHHHHHHhhhe
Confidence 4444555332 4554 4443 3444332 222 23333333222221 22 2333322 3432 244444444331 2
Q ss_pred cc-ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 234 NV-FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 234 d~-i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++ +..+++|+. +..+.|+ |+++++.+.+.++.+++ .||.+++|+|+|| |||.+|++++++.+.++++|-|.+-
T Consensus 143 ~vWvELGLQT~h~~Tlk~iN-RgHd~~~y~dav~r~rk---rgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH 218 (312)
T COG1242 143 EVWVELGLQTAHDKTLKRIN-RGHDFACYVDAVKRLRK---RGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLH 218 (312)
T ss_pred EEEEEeccchhhHHHHHHHh-cccchHHHHHHHHHHHH---cCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 21 355677776 9999999 99999999999999999 5899999999999 9999999999999999999987774
No 105
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.21 E-value=1.4e-09 Score=103.12 Aligned_cols=205 Identities=11% Similarity=0.166 Sum_probs=135.1
Q ss_pred EeeeCCccCCCCcCCCCCCC---CCCCCCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 132 IMILGDTCTRGCRFCNVKTS---RAPPPPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~---r~~~~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
+++...+|+.+|.||.-+.. .....++++|+++.+.....+ ..+.|++|||+.- + . .+.+.++++.+++.
T Consensus 23 ~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPl-l-~--~~~~~~l~~~~k~~ 98 (246)
T PRK11145 23 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAI-L-Q--AEFVRDWFRACKKE 98 (246)
T ss_pred EEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHh-c-C--HHHHHHHHHHHHHc
Confidence 44567899999999986532 111248899998887765433 3467999998742 1 1 34456888999874
Q ss_pred CCCcEEEEecCCCC-CChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE
Q 017179 206 KPNMLIEALVPDFR-GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML 283 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~-g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv 283 (376)
++.+.+.+-.+. ...+.++.+.+ .+|.+...+++.+ +.++.+++ .+.+..++.++.+++.... +.+.+-+|=
T Consensus 99 --g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g--~~~~~~l~~i~~l~~~g~~-v~i~~~li~ 172 (246)
T PRK11145 99 --GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVG--VSNHRTLEFARYLAKRNQK-TWIRYVVVP 172 (246)
T ss_pred --CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccC--CChHHHHHHHHHHHhCCCc-EEEEEEEEC
Confidence 455555553332 12466777765 3787788888764 78888873 3557888888888874322 456666666
Q ss_pred ecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCC-------CCCCCc--ccCChHHHHHHHHHHHHHhhhhh
Q 017179 284 GCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSK-------RHMPVS--EYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 284 GlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~-------~~~~v~--~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|+.++++|+.++.+++++++ +..+.+-+|-+++. ...++. +.+++++.+.+++++.+.|+.++
T Consensus 173 g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 173 GWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 77777889999999999885 55666644432210 111222 23567788888888888887654
No 106
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.19 E-value=2.2e-09 Score=106.31 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=136.3
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCC---CCCCchhHHHHHHHHHH-CCCcEEE
Q 017179 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAP---PPPDPDEPTNVAEAIAS-WGLDYVV 178 (376)
Q Consensus 103 ~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~---~~l~~eEi~~~a~al~~-~G~~eIv 178 (376)
...-++|+...|--+-. |-+.....+.++++|+.+|+||..+...++ ..++.+++.+.++.+++ .|+.+|+
T Consensus 67 ~~dp~~e~~~~~~~gl~-----hkyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~Vi 141 (321)
T TIGR03822 67 RADPIGDDAHSPVPGIV-----HRYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVI 141 (321)
T ss_pred CCCCcccccCCCCCCcc-----cCCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEE
Confidence 45667777655544321 112234445579999999999987642221 23677899998888875 4999999
Q ss_pred EEeeeCCCCCcccHHHHHHHHHHHHhhCCCc---EEEE----ecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhc
Q 017179 179 ITSVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEA----LVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR 251 (376)
Q Consensus 179 LTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i---~Ie~----l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr 251 (376)
|||||.--+. ...+.++++.+++. |.+ ++.. ..|... +++.++.|+++|.. +..+++...
T Consensus 142 lSGGDPl~~~---~~~L~~ll~~l~~i-~~v~~iri~Tr~~v~~p~ri-t~ell~~L~~~g~~-v~i~l~~~h------- 208 (321)
T TIGR03822 142 LTGGDPLVLS---PRRLGDIMARLAAI-DHVKIVRFHTRVPVADPARV-TPALIAALKTSGKT-VYVALHANH------- 208 (321)
T ss_pred EeCCCcccCC---HHHHHHHHHHHHhC-CCccEEEEeCCCcccChhhc-CHHHHHHHHHcCCc-EEEEecCCC-------
Confidence 9999754333 34688888888764 443 3332 123322 68899999999954 456666532
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChH
Q 017179 252 DHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPE 329 (376)
Q Consensus 252 ~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv--GlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe 329 (376)
++.. .++.++.++.+++ .|+.+....++ |..++.+++.++++++.++++....+.++ .|. .+....+ ++++
T Consensus 209 ~~el-~~~~~~ai~~L~~---~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~-~p~-~g~~~f~-~~~~ 281 (321)
T TIGR03822 209 AREL-TAEARAACARLID---AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL-DLA-PGTAHFR-VTIE 281 (321)
T ss_pred hhhc-CHHHHHHHHHHHH---cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec-CCC-CCccccc-CcHH
Confidence 1111 3788899999998 57777554444 88999999999999999999988777544 463 2333222 4454
Q ss_pred HHHHH
Q 017179 330 AFERY 334 (376)
Q Consensus 330 ~~~~l 334 (376)
+...+
T Consensus 282 ~~~~i 286 (321)
T TIGR03822 282 EGQAL 286 (321)
T ss_pred HHHHH
Confidence 44333
No 107
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.14 E-value=9.8e-09 Score=103.43 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=136.0
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHH--------HHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI--------ASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al--------~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.+.+|+.+|.||.-....-...++.+|+...+..+ ...|++.|+++| |+.-.. .+.+.+.|+.+++.
T Consensus 127 sq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln----~d~v~~~i~~l~~~ 202 (368)
T PRK14456 127 SQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN----TDNVFEAVLTLSTR 202 (368)
T ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC----HHHHHHHHHHHhcc
Confidence 47899999999987653222248899998876433 235789999999 764221 23577888888764
Q ss_pred -CC-C---cEEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCc
Q 017179 206 -KP-N---MLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD---HRANFKQSLDVLMMAKDYVPAGT 275 (376)
Q Consensus 206 -~p-~---i~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi 275 (376)
.. + -.|.+.+-. -.+.++.|.++|++ .++..+++.+ +.+.++.| +++.+++.++.++...+..+.-+
T Consensus 203 ~~~~~is~r~ItisT~G---l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 203 KYRFSISQRKITISTVG---ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred ccccCcCcCeeEEECCC---ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 11 1 144444432 24568999999997 6899999864 99998853 36799999999985444332224
Q ss_pred eEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 276 LTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 276 ~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.+..-+|=|+-.+++|+.++.++++++.+ .|.+-+|. |. ...+. +.+.++..+.++++..+.|+...
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~~-~VnlIpyn-~~-~~~~~-~~ps~e~i~~F~~~L~~~Gi~vt 346 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFFC-KINLIDYN-SI-VNIKF-EPVCSSTRERFRDRLLDAGLQVT 346 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCCC-eeEEeeec-cC-CCCCC-CCCCHHHHHHHHHHHHHCCCcEE
Confidence 45666777888999999999999999754 23333443 31 12221 23456778888888888887654
No 108
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.12 E-value=6.4e-09 Score=103.86 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=133.3
Q ss_pred eeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH---HCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 133 MILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA---SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~---~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+-.+.||+.+|.||.-....-...++.+||++.+..+. ..+++.|+++| |+.-.- .+.+.+.++.++...
T Consensus 105 issq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln----~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 105 ISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN----YENVIKSIKILNHKKMK 180 (343)
T ss_pred EEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh----HHHHHHHHHHHhchhcc
Confidence 44579999999999865422112488999988775543 24689999999 763211 334667777765321
Q ss_pred --CCcEEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 207 --PNMLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 207 --p~i~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
+.-.|.+.+- |..+.++.|.++|+++ ++..+++.+ +.+.++.| +++++++.++.++...+.....+.+..-
T Consensus 181 ~~g~~~itisTn---G~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yv 257 (343)
T PRK14469 181 NIGIRRITISTV---GIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYI 257 (343)
T ss_pred cCCCCeEEEECC---CChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 1114554443 3467889999999994 888888764 87887653 4789999999988766542222444455
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+|-|+..+++|+.+..++++.+++. |.+-+|- |... . .+.+.++..+.+.++..+.|+..
T Consensus 258 lI~g~NDs~ed~~~La~llk~~~~~-VnLIpyn-p~~~--~-~~~ps~e~l~~f~~~l~~~gi~v 317 (343)
T PRK14469 258 LIKGFNDEIEDAKKLAELLKGLKVF-VNLIPVN-PTVP--G-LEKPSRERIERFKEILLKNGIEA 317 (343)
T ss_pred EECCCCCCHHHHHHHHHHHhccCcE-EEEEecC-CCCc--c-CCCCCHHHHHHHHHHHHHCCCeE
Confidence 6668899999999999999998764 5554552 3211 1 12234567777777777777644
No 109
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.11 E-value=8e-09 Score=105.21 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=139.9
Q ss_pred CCccCC---CCcCCCCCCCC-CCCCCCchhHHHHHHHHHH-C--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 136 GDTCTR---GCRFCNVKTSR-APPPPDPDEPTNVAEAIAS-W--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 136 ~d~C~~---~C~FC~v~~~r-~~~~l~~eEi~~~a~al~~-~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
-..|.. +|.||.-.... ....++++|+++.+..... . ....|.|+||.-+-+. .++.++++.+++..
T Consensus 29 c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----~~l~eLl~~lk~~g-- 102 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----PELEELTKGLSDLG-- 102 (404)
T ss_pred CCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----HHHHHHHHHHHhCC--
Confidence 356734 88888443211 1224899999999887654 2 4688999998654332 46889999999863
Q ss_pred cEEEEe-cC-CCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 209 MLIEAL-VP-DFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 209 i~Ie~l-~p-d~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
+.+.+. +. ....+.+.++++++.|+|.+...+.+.+ ++++++. +..+.+..++.++.+.+. +.+..-+++=-
T Consensus 103 i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~-G~~~a~~ILe~L~~L~e~----~~v~~~ivlIP 177 (404)
T TIGR03278 103 LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWM-KDPTPEASLQCLRRFCES----CEVHAASVIIP 177 (404)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHh-CCCCHHHHHHHHHHHHhc----CCEEEEEEEeC
Confidence 444432 43 2233788999999999999999999764 9999987 344558999999998882 33444444433
Q ss_pred CCCH-HHHHHHHHHHHHcCCcEEEeecCCCCCC-C----CC-C-Cc--ccCChHHHHHH-HHHHHHHhhhhhccchhHhh
Q 017179 286 GETP-DQVVSTMEKVRAAGVDVMTFGQYMRPSK-R----HM-P-VS--EYITPEAFERY-RALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 286 GET~-ee~~e~L~~Lrel~vd~v~~~qY~~P~~-~----~~-~-v~--~~v~pe~~~~l-~~~a~~~gf~~~~sgp~vrs 354 (376)
|-++ ++..+++++|.++++.-+.+.+| ++.. . ++ + +. +..+.+++..+ ++++.+.++...-+ |+|.-
T Consensus 178 GiND~eel~~ti~~L~~lg~~~V~L~~y-~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~g~-~~~~~ 255 (404)
T TIGR03278 178 GVNDGDVLWKTCADLESWGAKALILMRF-ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVTGT-PLCDP 255 (404)
T ss_pred CccCcHHHHHHHHHHHHCCCCEEEEEec-ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCcccCC-ccccc
Confidence 5555 45569999999999998888666 2210 1 11 1 11 12345666666 78888877665544 68887
Q ss_pred hhhhcH
Q 017179 355 SYKAGE 360 (376)
Q Consensus 355 sy~a~~ 360 (376)
| ||.
T Consensus 256 ~--ag~ 259 (404)
T TIGR03278 256 E--TGA 259 (404)
T ss_pred C--CCC
Confidence 7 665
No 110
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.09 E-value=1.9e-08 Score=98.46 Aligned_cols=190 Identities=18% Similarity=0.294 Sum_probs=140.0
Q ss_pred eeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 133 MILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 133 m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
+.++..|+.+|.||....... +..++.++..+....+.+.| ...+.++||+.--.+| +.++++.+++. +.+.
T Consensus 23 ~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d-----~~ei~~~~~~~-~~~~ 96 (347)
T COG0535 23 IELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPD-----LLEIVEYARKK-GGIR 96 (347)
T ss_pred EeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccccc-----HHHHHHHHhhc-CCeE
Confidence 447999999999998887653 45689999998899999999 8888899987432233 67788888765 5566
Q ss_pred EEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GET 288 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET 288 (376)
+.+.+--..-+.+.++.++++|++.+.+.++..+ +.+..+++....++..++.++.+++ .|+. ..+-+.+ +.+
T Consensus 97 ~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~---~g~~--~~~~~~v~~~n 171 (347)
T COG0535 97 VSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKE---AGIL--VVINTTVTKIN 171 (347)
T ss_pred EEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHH---cCCe--eeEEEEEecCc
Confidence 6655533112578999999999999999999876 7767787567899999999999998 4654 2222223 788
Q ss_pred HHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCC-CcccCChHHHHHH
Q 017179 289 PDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMP-VSEYITPEAFERY 334 (376)
Q Consensus 289 ~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~-v~~~v~pe~~~~l 334 (376)
.+++.+.++.+.+++++.+.+.++. |..++.. .....+|+..+..
T Consensus 172 ~~~l~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 217 (347)
T COG0535 172 YDELPEIADLAAELGVDELNVFPLI-PVGRGEENLELDLTPEEEELL 217 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEe-ecccccccccccCCHHHHHHH
Confidence 9999999999999999877776554 4223332 3455566544433
No 111
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=2.7e-08 Score=99.68 Aligned_cols=203 Identities=12% Similarity=0.122 Sum_probs=129.0
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH-HCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC---
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--- 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~-~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~--- 206 (376)
.+-.+.+|+.+|.||.-........++++||++.+..+. ..++++|+++| |+ | +.. .+.+.+.++.+++..
T Consensus 106 cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n--~~~vi~~l~~l~~~~gl~ 181 (349)
T PRK14463 106 CISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LAN--LDNVIPALQILTDPDGLQ 181 (349)
T ss_pred EEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhc--HHHHHHHHHHhhcccccC
Confidence 345789999999999755422123489999998777654 45799999999 65 3 222 344555566654321
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
+.-.|.+.+-.. .+.+..+.....-.+..++++. ++++++|.| ++++.++.++.++...+....-+.+..-+|
T Consensus 182 ~s~r~itVsTnGl---~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI 258 (349)
T PRK14463 182 FSTRKVTVSTSGL---VPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMI 258 (349)
T ss_pred cCCceEEEECCCc---hHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEe
Confidence 112455555333 2344555443311244668876 499998743 578888888888776654322244455566
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
=|+.++++|+.++.++++++++ .|.+-+| .|. .+.. .+.+++++.+.++++..+.|+..
T Consensus 259 ~GvNDs~e~~~~L~~ll~~l~~-~vnlIPy-n~~-~~~~-~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 259 RGLNDSLEDAKRLVRLLSDIPS-KVNLIPF-NEH-EGCD-FRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred CCCCCCHHHHHHHHHHHhccCc-eEEEEec-CCC-CCCC-CCCCCHHHHHHHHHHHHHCCceE
Confidence 6779999999999999999876 5666566 342 1221 12245677888888877777654
No 112
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.07 E-value=3.1e-08 Score=99.51 Aligned_cols=199 Identities=11% Similarity=0.132 Sum_probs=132.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~------~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
.+-||+.+|.||+.........++++||++.+..+.. .|++.|+++| |+.- + . .+.+.++++.+++..
T Consensus 115 sqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPL-l-n--~~~v~~~l~~l~~~~- 189 (356)
T PRK14455 115 TQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPF-D-N--YDNVMDFLRIINDDK- 189 (356)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecccccc-C-C--HHHHHHHHHHHhccc-
Confidence 4679999999998886543335999999997765322 3688999999 5532 1 1 456788888887532
Q ss_pred Cc-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 208 NM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 208 ~i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
++ ++.+.+-.+ ...+..+.+.+++. +...+++.+ ++++++.| ++++.++.++.++.+.+....-+.+.
T Consensus 190 g~~~s~r~itvsT~G~---~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~ie 266 (356)
T PRK14455 190 GLAIGARHITVSTSGI---APKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFE 266 (356)
T ss_pred CcccCCCceEEEecCc---hHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 22 434444322 23566777877652 345677654 88887553 56788999999998766321114445
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.-+|=|+.++++|+.+..++++.+++ .|.+-+|. |.. ..+. +.+++++...+.++..+.|+..
T Consensus 267 y~lI~gvNDs~ed~~~La~ll~~l~~-~VnLIPyn-p~~-~~ky-~~ps~e~l~~f~~~L~~~gi~v 329 (356)
T PRK14455 267 YILLGGVNDQVEHAEELADLLKGIKC-HVNLIPVN-PVP-ERDY-VRTPKEDIFAFEDTLKKNGVNC 329 (356)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-cEEEEecC-cCC-CCCC-cCCCHHHHHHHHHHHHHCCCcE
Confidence 55666789999999999999999874 45554443 421 1121 2245677888888888888765
No 113
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=5.8e-08 Score=97.10 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=131.8
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-C-----CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-G-----LDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G-----~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
.+..+.+|+.+|.||.-....-...++++|+++.+..+... | ++.|+++| |+.-. . .+.+.+.++.+..
T Consensus 96 cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll--n--~~~v~~~i~~l~~ 171 (343)
T PRK14468 96 CVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL--N--YENVLKAARIMLH 171 (343)
T ss_pred EEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc--C--HHHHHHHHHHhcc
Confidence 34468999999999986543212358999999887665443 2 67999998 66321 1 3445555555532
Q ss_pred hCC-Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCce
Q 017179 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTL 276 (376)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~ 276 (376)
... ++ .|.+.+- |....++.|.+++++ .+...+.+.+ +.++++.| ++++.++.++.++...+....-+.
T Consensus 172 ~~g~~l~~r~itvST~---G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ 248 (343)
T PRK14468 172 PQALAMSPRRVTLSTV---GIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVT 248 (343)
T ss_pred cccccccCceEEEECC---CChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 210 11 3444442 235678889998887 3677777665 88988874 356889999999866554322244
Q ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 277 TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 277 tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+..-+|=|+-.++||+.+..++++++.+ .|.+-+|. |.. . .-.+.+++++.+.++++..+.|+..
T Consensus 249 ieyvLI~GvNDs~e~~~~L~~ll~~~~~-~VnLIPyn-p~~-~-~~~~~ps~e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 249 LEYTMLKGVNDHLWQAELLADLLRGLVS-HVNLIPFN-PWE-G-SPFQSSPRAQILAFADVLERRGVPV 313 (343)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHhcCCc-EEEEEcCC-CCC-C-CCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 5566666889999999999999999865 45555554 311 1 1122355677777777767667644
No 114
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.00 E-value=2.1e-08 Score=99.31 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=118.3
Q ss_pred EEeeeCCccCCCCcCCCCCCCCC-CCCCCchhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRA-PPPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~-~~~l~~eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+.++++++|+.+|+||.-..... ...++.+++.+.++.+.+ .|+++|+||||+.-..+| ..+.++++.+....
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d---~~L~~ll~~l~~i~~~ 174 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKD---HRLDWLLNLLEQIPHL 174 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCc---hHHHHHHHHHHhCCCC
Confidence 45668999999999998654321 123566777777777774 489999999997433333 23556666665421
Q ss_pred CCcEEE----EecCCCCCChHHHHHHHHcCccccc-ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EE
Q 017179 207 PNMLIE----ALVPDFRGNNGCVREVAKSGLNVFA-HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KT 279 (376)
Q Consensus 207 p~i~Ie----~l~pd~~g~~e~l~~L~~aGld~i~-h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt 279 (376)
..+.|. ++.|... +++.++.|+++|...+. ..++..+++. +...+.++.+++ .|+.+ .|
T Consensus 175 ~~iri~tr~~~~~p~ri-t~el~~~L~~~~~~~~~~~h~dh~~Ei~----------d~~~~ai~~L~~---~Gi~v~~qt 240 (321)
T TIGR03821 175 KRLRIHTRLPVVIPDRI-TSGLCDLLANSRLQTVLVVHINHANEID----------AEVADALAKLRN---AGITLLNQS 240 (321)
T ss_pred cEEEEecCcceeeHHHh-hHHHHHHHHhcCCcEEEEeeCCChHhCc----------HHHHHHHHHHHH---cCCEEEecc
Confidence 234444 2444432 67888999999876653 2344434433 335568888888 46655 44
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHH
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYR 335 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~ 335 (376)
.++=|+-.+.+++.++++.+.++++.-..+++ +.|.. +..- -.+++++..++.
T Consensus 241 vllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~-~~p~g-g~~~-f~v~~~~~~~i~ 293 (321)
T TIGR03821 241 VLLRGVNDNADTLAALSERLFDAGVLPYYLHL-LDKVQ-GAAH-FDVDDERARALM 293 (321)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHcCCeeCcccc-cCCCC-Cccc-ccCCHHHHHHHH
Confidence 45557778999999999999999998777643 35643 2221 235555544443
No 115
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.00 E-value=2.7e-08 Score=98.60 Aligned_cols=205 Identities=12% Similarity=0.160 Sum_probs=131.5
Q ss_pred CccCCCCcCCCCCCCCC--C-----CCCCchhHHHHHHHHHH---C---C--------------CcEEEEEeeeCCCCCc
Q 017179 137 DTCTRGCRFCNVKTSRA--P-----PPPDPDEPTNVAEAIAS---W---G--------------LDYVVITSVDRDDLAD 189 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~--~-----~~l~~eEi~~~a~al~~---~---G--------------~~eIvLTsg~r~dl~d 189 (376)
.+|+.+|.||.-+.... . ...+++||++.+..... . | .+++.|+++--|-+
T Consensus 66 ~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL-- 143 (322)
T PRK13762 66 AWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL-- 143 (322)
T ss_pred HHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc--
Confidence 46999999998764321 1 12577888777654321 1 3 35788885422222
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC--CCCCHHHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMM 266 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ 266 (376)
..++.++++.+++. ++.+.+.+-.. .++.++.| ++++|.+...++..+ +.|++++. .+.+++..++.|+.
T Consensus 144 --~p~l~eli~~~k~~--Gi~~~L~TNG~--~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 144 --YPYLPELIEEFHKR--GFTTFLVTNGT--RPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred --hhhHHHHHHHHHHc--CCCEEEECCCC--CHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 12588999999875 46666656443 36788888 788999999999765 89999973 24689999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCC--CCCCcccCChHHHHHHHHHHHHH-hh
Q 017179 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR--HMPVSEYITPEAFERYRALGMEM-GF 343 (376)
Q Consensus 267 ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~--~~~v~~~v~pe~~~~l~~~a~~~-gf 343 (376)
+++..-. +.+.+.++- |.++.+..+..+++++++++.|-+-+|+.-+.. .+.....+++++...+.+...+. |+
T Consensus 217 l~~~~~~-~~ir~tlv~--g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~ 293 (322)
T PRK13762 217 LPSKKTR-TVIRITLVK--GYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGY 293 (322)
T ss_pred HHhCCCC-EEEEEEEEC--CcCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCC
Confidence 9985211 334544444 455555558888899999999988777522211 12223345666666665554444 55
Q ss_pred hhhccchhHh
Q 017179 344 RYVASGPMVR 353 (376)
Q Consensus 344 ~~~~sgp~vr 353 (376)
..+...|..|
T Consensus 294 ~i~~~~~~s~ 303 (322)
T PRK13762 294 EILDESEPSR 303 (322)
T ss_pred eEEecCCCce
Confidence 5444444443
No 116
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.99 E-value=7.9e-08 Score=96.52 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=133.5
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHH---H-HC--C---CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAI---A-SW--G---LDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al---~-~~--G---~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-+.+|+.+|.||+-....-...++++||++.+... . .. | ++.|+++| |+.- + . .+.+.+.++.+++
T Consensus 108 sq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPL-l-n--~~~v~~~l~~l~~ 183 (354)
T PRK14460 108 CQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPL-L-N--LDEVMRSLRTLNN 183 (354)
T ss_pred CCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCccc-C-C--HHHHHHHHHHHhh
Confidence 47899999999975543212248999999988433 2 22 3 78999999 5532 1 1 4556677777765
Q ss_pred hC----CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHhCCCCceE
Q 017179 205 LK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 205 ~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
.. +...+.+.+-. ..+.++.|.++|+..++..+++.+ +.++++.|. +++.++.++.++.........+.+
T Consensus 184 ~~Gl~~~~r~itvsT~G---~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~i 260 (354)
T PRK14460 184 EKGLNFSPRRITVSTCG---IEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTF 260 (354)
T ss_pred hhccCCCCCeEEEECCC---ChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 32 11245555533 357788999999877888888765 999998743 367888888776543322222555
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
..-+|=|+.++++|+.+..++++.+++ .|.+-+|- |. .+.+. +.+.+++.+.+.++..+.|+..
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~~~-~VnLIpyn-~~-~g~~y-~~p~~e~v~~f~~~l~~~Gi~v 324 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRTKC-KLNLIVYN-PA-EGLPY-SAPTEERILAFEKYLWSKGITA 324 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-cEEEEcCC-CC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 666777889999999999999999875 35554553 31 23332 2355677888888877777644
No 117
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=1e-07 Score=95.17 Aligned_cols=204 Identities=10% Similarity=0.043 Sum_probs=134.1
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC-
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP- 207 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p- 207 (376)
-.+-.+.||+.+|.||.-........++.+||+..+..+.+. +++.|+++| |+.- .. .+.+.+.++.++....
T Consensus 105 ~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~N--~d~vi~al~~l~~~~g~ 180 (345)
T PRK14466 105 LCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--DN--LDEVLKALEILTAPYGY 180 (345)
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--cc--HHHHHHHHHHHhhcccc
Confidence 344457899999999986653222348999999998877543 689999999 7642 11 3455666666654321
Q ss_pred ---CcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 208 ---NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 208 ---~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
...|.+.+-. ....+..+.+...-.++..+.+. +++++++.| ++++.++.++.++...+....-+.+.--+
T Consensus 181 ~~s~r~ItVsT~G---~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 181 GWSPKRITVSTVG---LKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred CcCCceEEEEcCC---CchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 1255555533 23335555554333445667755 499999886 45778999999988655433224555666
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|=|+-.++||..+..+.++.++ ..|++-+|- |. .+.+ .+.+..++.+.+.++-.+.|+..
T Consensus 258 i~gvND~~e~a~~L~~ll~~~~-~~VNLIp~N-p~-~~~~-~~~~s~~~~~~F~~~L~~~gi~~ 317 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGID-CRVNLIRFH-AI-PGVD-LEGSDMARMEAFRDYLTSHGVFT 317 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCCC-ceEEEEecC-CC-CCCC-CcCCCHHHHHHHHHHHHHCCCcE
Confidence 6688999999999999999887 456666664 31 1222 23355677888888777777643
No 118
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.98 E-value=1.1e-07 Score=95.04 Aligned_cols=204 Identities=11% Similarity=0.138 Sum_probs=134.4
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~---G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
+..++.-+-||+.+|.||.-....-...++++||+..+..+.+. +++.|+++| |+.-. . .+.+.+.++.++.
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPll--n--~~~v~~~i~~l~~ 176 (345)
T PRK14457 101 LTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLL--N--IDEVLAAIRCLNQ 176 (345)
T ss_pred CEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcccc--C--HHHHHHHHHHHhc
Confidence 34455556799999999976653212248999999988776542 589999999 76321 1 3446666666654
Q ss_pred hCCCc---EEEEecCCCCCChHHHHHHHHcC------cc-cccccccch-HHHHHhhcC--CCCCHHHHHHHHHH-HHHh
Q 017179 205 LKPNM---LIEALVPDFRGNNGCVREVAKSG------LN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMM-AKDY 270 (376)
Q Consensus 205 ~~p~i---~Ie~l~pd~~g~~e~l~~L~~aG------ld-~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~-ak~~ 270 (376)
.. ++ .|.+++- |..+.+..|.+.+ ++ .+...+... +++++++.| +++..++.++.++. +.+.
T Consensus 177 ~~-~i~~r~itvST~---G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~ 252 (345)
T PRK14457 177 DL-GIGQRRITVSTV---GVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT 252 (345)
T ss_pred cc-CCccCceEEECC---CchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh
Confidence 32 33 5555552 2455688888776 23 245556655 488988875 46778888866655 4442
Q ss_pred CCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 271 VPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 271 ~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.-+.+..-+|=|+-.++|++.++.++++.+++ .|.+-+| .|. ...+. +.+++++.+.+.++..+.|+..
T Consensus 253 -gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPy-np~-~~~~~-~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 253 -GRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPY-NPI-DEVEF-QRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred -CCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 222667788888999999999999999999876 4665555 231 11222 2345677888888877777754
No 119
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.97 E-value=2.7e-08 Score=99.02 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=113.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC-CCCCchhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP-PPPDPDEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~-~~l~~eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
...++.++++|+.+|+||..+..... .....+++.+.++.+.+ .|+++|+||||+.-.++| ..+.++++.|++..
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~~i~ 189 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLEEIP 189 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHHhcC
Confidence 34467789999999999987543221 12236778887777764 589999999998544443 34777788877642
Q ss_pred --CCcEEEEecCCCC---CChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc--eEE
Q 017179 207 --PNMLIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LTK 278 (376)
Q Consensus 207 --p~i~Ie~l~pd~~---g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi--~tk 278 (376)
..+++..-+|... -+++.++.|+++|+..+-..+...+ ++ .++..+.++.+++ .|+ .+.
T Consensus 190 ~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei----------~~~~~~ai~~L~~---aGi~v~~q 256 (331)
T TIGR00238 190 HLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI----------TEEFAEAMKKLRT---VNVTLLNQ 256 (331)
T ss_pred CccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC----------CHHHHHHHHHHHH---cCCEEEee
Confidence 1244544444321 1688889999988776544333221 22 2556678888877 455 456
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+.++=|.-.+.+++.++++.+.++++.-..+++ +.|
T Consensus 257 tvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~-~~~ 292 (331)
T TIGR00238 257 SVLLRGVNDRAQILAKLSIALFKVGIIPYYLHY-LDK 292 (331)
T ss_pred cceECCcCCCHHHHHHHHHHHhhcCeecCeecC-cCC
Confidence 777778888888999999999999987666643 345
No 120
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.95 E-value=1.2e-07 Score=94.46 Aligned_cols=191 Identities=9% Similarity=0.006 Sum_probs=129.5
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC---CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhh----C
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW---GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKEL----K 206 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~---G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~----~ 206 (376)
-+.+|+.+|.||......-...++.+|++..+..+.+. .++.|+++| |+.-.- .+.+.+.++.++.. .
T Consensus 103 sq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN----~d~v~~~i~~l~~~~~~~~ 178 (336)
T PRK14470 103 SQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN----YDEVLRAAYALCDPAGARI 178 (336)
T ss_pred CCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC----HHHHHHHHHHHhCcccccc
Confidence 46799999999987753222247888888777665432 579999999 764221 23466677777643 2
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-d~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
+...|.+.|-.. ...+..+.+.++ +.+...+++.+ +.+.++.|. +++.++.++.++...+.. .-+.+.--+|
T Consensus 179 ~~~~ItVsTnG~---~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~-rri~ieyvLI 254 (336)
T PRK14470 179 DGRRISISTAGV---VPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALR-GRVTLEYVMI 254 (336)
T ss_pred CCCceEEEecCC---hHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhC-CCeEEEEEEE
Confidence 345666666432 345677777776 66888888765 888888643 578999999999988762 2245566677
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHH
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALG 338 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a 338 (376)
-|+..+++|+.+..++++.+.+.+ .+-+|-.| . + .+ +.++.++.+.+.++-
T Consensus 255 ~GvNDseeda~~La~llk~l~~~v-nlI~~N~~-~-~-~~-~~p~~~~i~~f~~~l 305 (336)
T PRK14470 255 SGVNVGEEDAAALGRLLAGIPVRL-NPIAVNDA-T-G-RY-RPPDEDEWNAFRDAL 305 (336)
T ss_pred ecccCCHHHHHHHHHHHhcCCCeE-EEeccCCC-C-C-Cc-cCCCHHHHHHHHHHH
Confidence 788999999999999999887643 33355433 2 2 22 224456666666665
No 121
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.91 E-value=2.2e-07 Score=93.07 Aligned_cols=193 Identities=9% Similarity=0.112 Sum_probs=125.4
Q ss_pred EeeeCCccCCCCcCCCCCCCC-C-----CCCCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHH
Q 017179 132 IMILGDTCTRGCRFCNVKTSR-A-----PPPPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLK 203 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r-~-----~~~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik 203 (376)
++..++.|+.+|.||...... . ...++.+.+...++.+.+. +...|.+|||+.--.+ .+.+.++++.++
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~---~~~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG---LEFFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC---hHHHHHHHHHHH
Confidence 334458999999999876421 1 1237777777777765554 4467899999632111 234567777776
Q ss_pred hhC-CCcE--EEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 204 ELK-PNML--IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 204 ~~~-p~i~--Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
+.. .++. +.+.|--..-+++.++.|.+.++ .+...+|..++++..+|. .+.+|+..++.|+.+++. |+.+
T Consensus 85 ~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~---~~~~ 160 (370)
T PRK13758 85 KHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKY---KVEF 160 (370)
T ss_pred HhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHh---CCCc
Confidence 652 2232 34445332226788899988885 788889987777777762 357899999999999984 4555
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcc-cCChHHHH
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSE-YITPEAFE 332 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~-~v~pe~~~ 332 (376)
...+++.- .+.+++.+.++++++++++.+.+...+.|...+..... .+.|+.+.
T Consensus 161 ~i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 215 (370)
T PRK13758 161 NILCVVTS-NTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYT 215 (370)
T ss_pred eEEEEecc-ccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHH
Confidence 55555554 46778888999999999988766444445332322222 24565443
No 122
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.91 E-value=6.5e-08 Score=94.50 Aligned_cols=200 Identities=21% Similarity=0.269 Sum_probs=135.9
Q ss_pred CCccCCCCcCCCCCCC---CCCC---CCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 136 GDTCTRGCRFCNVKTS---RAPP---PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~---r~~~---~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+.+|+.+|-||++..+ |... -.++|-+++-.+.+++. +.=|++|-|+--+-+ .-|+.++|+++++. |
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~l----YP~l~~lVqalk~~-~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLL----YPHLVDLVQALKEH-K 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCcc----chhHHHHHHHHhcC-C
Confidence 5699999999998753 2111 26888777777666654 235888888754433 24789999999886 4
Q ss_pred Cc-EEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 208 NM-LIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 208 ~i-~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
++ .|..-+-...-+.+.+++|.+||+|.+|.+++..| ++-+.+.+ +.++.+..+++.+.+.+ .|+.+-..=++=
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~---a~idvlIaPv~l 265 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN---AGIDVLIAPVWL 265 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh---CCCCEEEeeeec
Confidence 54 33333322222789999999999999999999876 66666553 25788999999999988 455544444444
Q ss_pred cCCCHHHHHHHHHHHHHcCC----cEEEeecCCCCCCCCC-CC-cccCChHHH-HHHHHHHHHHhhh
Q 017179 285 CGETPDQVVSTMEKVRAAGV----DVMTFGQYMRPSKRHM-PV-SEYITPEAF-ERYRALGMEMGFR 344 (376)
Q Consensus 285 lGET~ee~~e~L~~Lrel~v----d~v~~~qY~~P~~~~~-~v-~~~v~pe~~-~~l~~~a~~~gf~ 344 (376)
.|-+|+|+...+.+.++++. -.+++ |-+.|.+.+- |+ .+-++=.+| ..|+++-.+.|.+
T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgi-Qkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~k 331 (414)
T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGI-QKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVK 331 (414)
T ss_pred CCcChHHHHHHHHHHHHhCCCCCCCCcce-EEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCC
Confidence 58899999999999999986 24555 4444643332 22 222222444 4557777788877
No 123
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.89 E-value=4.3e-07 Score=91.62 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=132.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH---C------C--CcEEEEEe-eeCCCCCcccHHHHHHHHHHH
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---W------G--LDYVVITS-VDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~---~------G--~~eIvLTs-g~r~dl~d~g~~~~~elvr~I 202 (376)
.+.||+.+|.||+-....-...++++||+..+..+.+ . | ++.|++.| |+.-+ ..+.+.+.++.|
T Consensus 127 sQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl----N~d~V~~~i~~l 202 (373)
T PRK14459 127 SQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA----NYKRVVAAVRRI 202 (373)
T ss_pred ecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh----hHHHHHHHHHHH
Confidence 4789999999998554221224999999998876642 1 2 67899999 65321 134577777777
Q ss_pred HhhCC---Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCC
Q 017179 203 KELKP---NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVP 272 (376)
Q Consensus 203 k~~~p---~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p 272 (376)
++..| ++ +|.+.+-.+ ...+..|.+.+++ .++..+.+.+ ++++++.| ++++.++.++.++...+...
T Consensus 203 ~~~~~~g~gis~r~ITvST~Gl---~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 203 TAPAPEGLGISARNVTVSTVGL---VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred hCcccccCCccCCEEEEECcCc---hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 66211 23 555554322 3567889998887 5677777765 99999885 46889999999766654321
Q ss_pred CCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 273 AGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 273 ~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~--vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.-+.+.--+|=|+-.+++|..+..++++.++ ...|.+-+|- |. .+.+. +....+..+.+.++-.+.|+..
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyN-p~-~~~~y-~~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLN-PT-PGSKW-TASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccC-CC-CCCCC-cCCCHHHHHHHHHHHHHCCCeE
Confidence 1134455566688999999999999999884 3456665664 31 12221 2234466777777767777644
No 124
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.84 E-value=7.5e-07 Score=89.51 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=129.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH------CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS------WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~------~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
-+.+|+.+|.||+.....-...++.+|+++.+..+.. .+++.|++.| |+.- + ..+.+.+.++.+++...
T Consensus 111 sQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPL-l---n~d~v~~~l~~l~~~~g 186 (355)
T TIGR00048 111 SQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPL-L---NLNEVVKAMEIMNDDFG 186 (355)
T ss_pred cCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchh-h---CHHHHHHHHHHhhcccc
Confidence 4678999999998765322234899999987655432 2478899999 6532 1 13456677777764321
Q ss_pred -Cc---EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 208 -NM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 208 -~i---~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
++ ++.+.+-. ....+..|.+.+++. +...+...+ +.++++.| +++++++.++.++...+..+.-+.+..
T Consensus 187 ~~i~~~~itisT~G---~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtiey 263 (355)
T TIGR00048 187 LGISKRRITISTSG---VVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEY 263 (355)
T ss_pred cCcCCCeEEEECCC---chHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEE
Confidence 23 55555533 346788898888884 567777665 88888753 457789999888755443222244455
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+|=|+-.+++|+.+..++++.+++ .|.+-+|- |. ...+.. .+.+++.+.++++-.+.|+..
T Consensus 264 vLI~GvNDs~e~a~~La~llk~l~~-~VnLIPyn-p~-~~~~~~-~ps~e~i~~f~~~L~~~gi~v 325 (355)
T TIGR00048 264 VLLDGVNDQVEHAEELAELLKGTKC-KVNLIPWN-PF-PEADYE-RPSNEQIDRFAKTLMSYGFTV 325 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCC-ceEEEecc-cC-CCCCCC-CCCHHHHHHHHHHHHHCCCeE
Confidence 5666888899999999999999875 34443442 31 122221 245677777887777777755
No 125
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.75 E-value=1.5e-06 Score=87.11 Aligned_cols=201 Identities=11% Similarity=0.109 Sum_probs=126.4
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHCC--CcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC-CC--
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASWG--LDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PN-- 208 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G--~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-p~-- 208 (376)
-+.||+.+|.||+.....-...++.+||++.+..+...| ++.|+++| |+.-.-. .+.+.|+.|++.. .+
T Consensus 106 sqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~-----~v~~~i~~l~~~~~~~~~ 180 (347)
T PRK14453 106 SQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANP-----ELFDALKILTDPNLFGLS 180 (347)
T ss_pred cCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCH-----HHHHHHHHHhcccccCCC
Confidence 478999999999887643223599999999988776665 89999999 7643221 2666676666522 11
Q ss_pred -cEEEEecCCCCCChHHHHHHHHcCcccccc--cccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 209 -MLIEALVPDFRGNNGCVREVAKSGLNVFAH--NIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 209 -i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h--~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
-.|.+.+-.+. ..++.+.+.... ++. .+.+. ++...++.| +++..++.++.++........-+.+..-+|
T Consensus 181 ~r~itVsT~G~~---~~i~~l~~~~~~-v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI 256 (347)
T PRK14453 181 QRRITISTIGII---PGIQRLTQEFPQ-VNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIML 256 (347)
T ss_pred CCcEEEECCCCc---hhHHHHHhhccC-cCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeE
Confidence 23455554331 224555444222 333 34443 366666553 356667776666555443222266788888
Q ss_pred EecCCCHHHHHHHHHHHHHcC----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAG----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
=|+-.+++|+.+..++++.++ +..|.+-+|. |......-.+.+..++.+.+.++..+.|+..
T Consensus 257 ~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~v 322 (347)
T PRK14453 257 EGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYN-STDKTPFKFQSSSAGQIKQFCSTLKSAGISV 322 (347)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCcceEEEecCC-CCCCCCccCCCCCHHHHHHHHHHHHHCCCcE
Confidence 899999999999999999873 4567776664 3211110123355677888888888888754
No 126
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.72 E-value=8.6e-07 Score=90.55 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=120.5
Q ss_pred hhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCC--CCCCCchhHHHHHHHHHH-CCCcEEEEE
Q 017179 104 LHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRA--PPPPDPDEPTNVAEAIAS-WGLDYVVIT 180 (376)
Q Consensus 104 L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~--~~~l~~eEi~~~a~al~~-~G~~eIvLT 180 (376)
..-++|+...|--+- -|-+.....+.+++.|+..|+||..+...+ ...++.+++.+.++.+++ .++++|+||
T Consensus 88 ~Dpl~E~~~spvpGl-----~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLS 162 (417)
T TIGR03820 88 EDPLAEDEDSPVPGI-----THRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLS 162 (417)
T ss_pred cCcccccccCCCCCc-----eeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345566655553321 122334455567999999999998765211 124788999998888887 499999999
Q ss_pred eeeCCCCCcccHHHHHHHHHHHHhhCCCc---EEEEecCCCC---CChHHHHHHHHcCcccccccccchHHHHHhhcCCC
Q 017179 181 SVDRDDLADQGSGHFAQTVRKLKELKPNM---LIEALVPDFR---GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHR 254 (376)
Q Consensus 181 sg~r~dl~d~g~~~~~elvr~Ik~~~p~i---~Ie~l~pd~~---g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~ 254 (376)
|||.--++| ..+..+++.|++. |++ +|..-+|.+. -+++.++.|++.+...+...+...+++
T Consensus 163 GGDPLll~d---~~L~~iL~~L~~I-phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei-------- 230 (417)
T TIGR03820 163 GGDPLLLSD---DYLDWILTELRAI-PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI-------- 230 (417)
T ss_pred CCccccCCh---HHHHHHHHHHhhc-CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC--------
Confidence 998544444 3344556777653 444 3433333322 168899999999865554444433333
Q ss_pred CCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd 305 (376)
.++..+.++.+++ .|+.+ .|-++=|.-.+.+-+.++++.|.+++|.
T Consensus 231 --t~~a~~Al~~L~~---aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~ 278 (417)
T TIGR03820 231 --TASSKKALAKLAD---AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVR 278 (417)
T ss_pred --hHHHHHHHHHHHH---cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCe
Confidence 4677788888888 47654 5667778888999999999999999974
No 127
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-06 Score=81.71 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=135.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCC---CCC---CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRA---PPP---PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~---~~~---l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
...+.+..-||+.+|.||.=+.... +.. ++++++.+.+ ....+++-|++|||+.- + ..+.+.++++..
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGGEP~-~---q~e~~~~~~~~a 108 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGGEPT-L---QAEFALDLLRAA 108 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECCcch-h---hHHHHHHHHHHH
Confidence 3445555679999999997664321 111 3434333322 23347899999999742 2 156788899999
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc-hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET-VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI 281 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i 281 (376)
|+. ++.+.+-+--|. .++.++.|.+. +|.+..-+=. .+++|+.+. +.+.+..++.++.+.+.... +.+++-+
T Consensus 109 ke~--Gl~~~l~TnG~~-~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t--g~~~~~vl~~~~~l~~~g~~-ve~r~lv 181 (260)
T COG1180 109 KER--GLHVALDTNGFL-PPEALEELLPL-LDAVLLDLKAFDDELYRKLT--GADNEPVLENLELLADLGVH-VEIRTLV 181 (260)
T ss_pred HHC--CCcEEEEcCCCC-CHHHHHHHHhh-cCeEEEeeccCChHHHHHHh--CCCcHHHHHHHHHHHcCCCe-EEEEEEE
Confidence 886 677776665443 56667777776 6766554433 457799988 45559999999999984222 4567777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCC-cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGV-DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~v-d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+=|+...++|+.+..+++.++.. .-+.+-+|.++.. +.....-..+..+...+.+.+.|..++.-|
T Consensus 182 iPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~--~~~~p~~~~~~le~~~~~a~~~~~~~v~~~ 248 (260)
T COG1180 182 IPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYK--LKDLPPTPVETLEEAKKLAKEEGLKFVYIG 248 (260)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCcc--ccccCCCcHHHHHHhHhhhHHHHHHhHhhh
Confidence 77888999999999999998543 3466656643322 111112234667788888888887777543
No 128
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.68 E-value=3.1e-07 Score=89.81 Aligned_cols=164 Identities=16% Similarity=0.273 Sum_probs=114.5
Q ss_pred EeeeCCccCCCCcCCCCCCCCC-CC-----CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 132 IMILGDTCTRGCRFCNVKTSRA-PP-----PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~-~~-----~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.+-+++.|+++|-||.++..|. .. ..+.....++.+.+..++..-+-||||+. +.. .+...++++.+|+.
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdP--l~~--ieR~~~~ir~LK~e 106 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDP--LLE--IERTVEYIRLLKDE 106 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCCh--HHH--HHHHHHHHHHHHHh
Confidence 3445899999999999986431 11 13444445555555566667778899863 211 56788899999988
Q ss_pred C-CCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 206 K-PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 206 ~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
+ .+.+|++.++....+++.++.|.+||+|-+-.+.. .+.....+.+++.|..|++. |+.+.-- |=.
T Consensus 107 fG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~---------~~~~~~~e~~i~~l~~A~~~---g~dvG~E-iPa 173 (353)
T COG2108 107 FGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP---------RPGSKSSEKYIENLKIAKKY---GMDVGVE-IPA 173 (353)
T ss_pred hccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC---------CccccccHHHHHHHHHHHHh---Cccceee-cCC
Confidence 8 46899999976666899999999999998765422 11223468889999999985 3322111 112
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 285 CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 285 lGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+=.-++.+.+..+.+.+.+.+++++.+.
T Consensus 174 ipg~e~~i~e~~~~~~~~~~~FlNiNEL 201 (353)
T COG2108 174 IPGEEEAILEFAKALDENGLDFLNINEL 201 (353)
T ss_pred CcchHHHHHHHHHHHHhcccceeeeeee
Confidence 2345678889999999999999998544
No 129
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.68 E-value=4.4e-06 Score=83.81 Aligned_cols=202 Identities=11% Similarity=0.169 Sum_probs=126.3
Q ss_pred EeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH----CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 132 IMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS----WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 132 ~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~----~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
.+-.+.||+.+|.||+-....-...++.+||+..+..+.. .++..|++.| |+.-. ..+.+.+.++.+++..
T Consensus 102 cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~----N~d~v~~~l~~l~~~~ 177 (348)
T PRK14467 102 CVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA----NYENVRKAVQIMTSPW 177 (348)
T ss_pred EEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc----CHHHHHHHHHHHcChh
Confidence 3445899999999998765321125899999988766554 3579999999 75321 1456777777776532
Q ss_pred CCc-----EEEEecCCCCCChHHHHHHHHcC----cccccccccch-HHHHHhhcCC--CCCHHHHHHHHHHHHHhCCCC
Q 017179 207 PNM-----LIEALVPDFRGNNGCVREVAKSG----LNVFAHNIETV-EELQSAVRDH--RANFKQSLDVLMMAKDYVPAG 274 (376)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aG----ld~i~h~lEtv-~~l~~~vr~r--~~t~e~~L~vl~~ak~~~p~G 274 (376)
++ ++.+.|-.+ ...+..+.... ++ +...+... ++.++++.|. ++.++..++.++...+....-
T Consensus 178 -gl~~~~r~itvsT~G~---~~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 178 -GLDLSKRRITISTSGI---IHQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred -ccCcCCCcEEEECCCC---hhHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 23 555555433 23345555432 23 22456655 5889988852 356677777776544322112
Q ss_pred ceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 275 TLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 275 i~tkt~imvGlGET~ee~~e~L~~Lrel~-vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
+.+..-+|=|+-.+++++.++.++++.++ +..|.+-+| .|. ...+. +.+.+++.+.+.++..+.|+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPy-np~-~~~~~-~~ps~e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPF-NPD-PELPY-ERPELERVYKFQKILWDNGIST 321 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 55566677788899999999999999885 445666555 231 11222 2244567777777777777654
No 130
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=98.67 E-value=1.7e-06 Score=88.20 Aligned_cols=178 Identities=15% Similarity=0.252 Sum_probs=128.3
Q ss_pred cEEEEeeeCCccCC-CCcCCCCCC------CC---CCCC-------C-CchhHHHHHHHHHHCCC---c-EEEEEeeeCC
Q 017179 128 ATATIMILGDTCTR-GCRFCNVKT------SR---APPP-------P-DPDEPTNVAEAIASWGL---D-YVVITSVDRD 185 (376)
Q Consensus 128 ~tat~m~i~d~C~~-~C~FC~v~~------~r---~~~~-------l-~~eEi~~~a~al~~~G~---~-eIvLTsg~r~ 185 (376)
+.+..|.--.+|+. .|-||...- +. .|.. . +..+....++++...|- + ++.|-||.=.
T Consensus 66 aVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFt 145 (515)
T COG1243 66 AVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFT 145 (515)
T ss_pred eEEEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEeccccc
Confidence 35555555679997 999997661 11 1111 2 23566677888888885 3 8888999755
Q ss_pred CCCcccHHHHHHHH-HHHH----------hhC--CCcE---EEEe-cCCCCCChHHHHHHHHcCcccccccccchH-HHH
Q 017179 186 DLADQGSGHFAQTV-RKLK----------ELK--PNML---IEAL-VPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQ 247 (376)
Q Consensus 186 dl~d~g~~~~~elv-r~Ik----------~~~--p~i~---Ie~l-~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~ 247 (376)
.++..--++|...+ +++. ..+ ...+ |.+. -||+. +++.+..|+..|+..+..+++++. +++
T Consensus 146 a~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~-~ee~ld~mlkyG~TrVELGVQSiyd~Vl 224 (515)
T COG1243 146 ALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYI-DEEHLDQMLKYGVTRVELGVQSIYDDVL 224 (515)
T ss_pred CCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCcccc-CHHHHHHHHhcCCcEEEEeeeeHHHHHH
Confidence 44422223344333 3332 011 0112 2222 37776 789999999999999999999875 999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcC---CcEEEee
Q 017179 248 SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAG---VDVMTFG 310 (376)
Q Consensus 248 ~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~---vd~v~~~ 310 (376)
++++ |+|+.++..+.-+.+|. .|+.+..+||.|| |-+.|-=+++.+.+-+.+ .|++-|-
T Consensus 225 ~~~~-RGHtvedv~~a~rLlKd---~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIY 287 (515)
T COG1243 225 ERTK-RGHTVEDVVEATRLLKD---AGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIY 287 (515)
T ss_pred HHhc-CCccHHHHHHHHHHHHh---cCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 9999 99999999999999999 6899999999999 999888888888888887 8998885
No 131
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.66 E-value=4e-07 Score=88.15 Aligned_cols=170 Identities=16% Similarity=0.307 Sum_probs=114.8
Q ss_pred eeCCccCCCCcCCCCCCCC-CC-CCCCchhHHHHHHHHHHCCC-cEEEEEeee--CCCCCcccHHHHHHHHHHHHhh--C
Q 017179 134 ILGDTCTRGCRFCNVKTSR-AP-PPPDPDEPTNVAEAIASWGL-DYVVITSVD--RDDLADQGSGHFAQTVRKLKEL--K 206 (376)
Q Consensus 134 ~i~d~C~~~C~FC~v~~~r-~~-~~l~~eEi~~~a~al~~~G~-~eIvLTsg~--r~dl~d~g~~~~~elvr~Ik~~--~ 206 (376)
+++|.|..+|.||+-..+. .| ..++|+|++...-...+..+ .-..|+||- .+|+. -+.+.++.+.++-. +
T Consensus 59 LlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyT---mE~mi~var~LRle~~f 135 (404)
T COG4277 59 LLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYT---MEEMIEVARILRLEHKF 135 (404)
T ss_pred HHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccccccCcchH---HHHHHHHHHHHhhcccc
Confidence 4799999999999876543 23 24999999998766665554 667788774 34433 45666666666532 2
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHH---------------
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKD--------------- 269 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~--------------- 269 (376)
.-|+.. ++|.- +++.+++.--. +|.+.+|||+. ++-++.+.| ..++.+.++-+..++.
T Consensus 136 ~GYIHlK-~IPga--s~~li~eagly-adRvSiNIElp~~~~lk~lap-~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~t 210 (404)
T COG4277 136 RGYIHLK-IIPGA--SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAP-EKDPTDILRSMGWIRLKILENAEDKRRKRHT 210 (404)
T ss_pred CcEEEEE-ecCCC--CHHHHHHHhhh-hheeEEeEecCCcchhhhhCC-CCChHHHHHHHHHHHHHHhhcccchhhhccC
Confidence 224444 44443 56666655433 68999999975 366677773 5556666665555544
Q ss_pred --hCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH-cCCcEEEeecCC
Q 017179 270 --YVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA-AGVDVMTFGQYM 313 (376)
Q Consensus 270 --~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lre-l~vd~v~~~qY~ 313 (376)
..|.| -+|.||||- ||||++++..-..|.. .....|-+..|+
T Consensus 211 p~fapaG--QSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~ 256 (404)
T COG4277 211 PEFAPAG--QSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFS 256 (404)
T ss_pred ccccCCC--CceEEEEecCCCchHHHHHHHHHHhhccceeEEEeeccc
Confidence 12444 478999999 9999999999888874 466777776554
No 132
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.66 E-value=1.7e-06 Score=88.36 Aligned_cols=170 Identities=9% Similarity=0.128 Sum_probs=115.6
Q ss_pred eCCccCCCCcCCCCCCCC-----CC-CCCCchhHHHHHHHHHHC-CCcEE--EEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSR-----AP-PPPDPDEPTNVAEAIASW-GLDYV--VITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r-----~~-~~l~~eEi~~~a~al~~~-G~~eI--vLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.++.|+.+|.||...... .+ ..++.+++.+.++.+.+. |...+ .++||+.- +. +...|.++++.+++.
T Consensus 20 ~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPl-L~--~~~~~~~~~~~~~~~ 96 (412)
T PRK13745 20 VGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETL-MR--PLSFYKKALELQKKY 96 (412)
T ss_pred cCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccC-CC--cHHHHHHHHHHHHHH
Confidence 457999999999875321 12 238999999988887754 66554 44788632 21 123455555544432
Q ss_pred CC--CcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcC---CCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 206 KP--NMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRD---HRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 206 ~p--~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~---r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
.. ++.+.+.|-...-+++.++.|++.+. .+...||..+++....|. .+.+|++.++.|+.+++ .|+.+..
T Consensus 97 ~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~---~gi~~~i- 171 (412)
T PRK13745 97 ARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKK---HGVEWNA- 171 (412)
T ss_pred cCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHH---cCCCEEE-
Confidence 22 34444544332226888999999986 788889987777766652 24689999999999998 4654433
Q ss_pred EEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 281 IMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 281 imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.=+ .++.++..+.++++++++++.+.|.+++
T Consensus 172 -~~vv~~~n~~~~~e~~~~~~~lg~~~~~~~p~~ 204 (412)
T PRK13745 172 -MAVVNDFNADYPLDFYHFFKELDCHYIQFAPIV 204 (412)
T ss_pred -EEEEcCCccccHHHHHHHHHHcCCCeEEEEecc
Confidence 3333 6777888999999999999988776555
No 133
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.64 E-value=2e-06 Score=84.01 Aligned_cols=212 Identities=15% Similarity=0.230 Sum_probs=143.0
Q ss_pred CccCCCCcCCCCCCCC-----CCCCCCchhHHHHHHHHHHC------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 137 DTCTRGCRFCNVKTSR-----APPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r-----~~~~l~~eEi~~~a~al~~~------G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..|+.+|-||-..... .|....+++|.+..+.+... ..++|-|++.--|-|. .++-++|+.+|+.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy----~~L~elI~~~k~~ 107 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY----PNLGELIEEIKKR 107 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc----cCHHHHHHHHHhc
Confidence 3899999999774321 12236788888888887766 5689999876545542 2477888888876
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCC--CCCHHHHHHHHHHHHHh-CCCCceEEEeE
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDH--RANFKQSLDVLMMAKDY-VPAGTLTKTSI 281 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r--~~t~e~~L~vl~~ak~~-~p~Gi~tkt~i 281 (376)
.. ..+-+++-.- .++.++.|. -+|.+-..+++.+ ..|++|+-+ +..++..++.|+..++. ... +.+.+.+
T Consensus 108 g~-~~tflvTNgs--lpdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~-~vir~tl 181 (296)
T COG0731 108 GK-KTTFLVTNGS--LPDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR-TVIRTTL 181 (296)
T ss_pred CC-ceEEEEeCCC--hHHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc-EEEEEEE
Confidence 32 4444455322 256777776 3688888899876 999999822 35799999999999986 333 5677777
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCC--CCCcccCChHH-HHHHHHHHHHHhhhhhccchhHhhhhhh
Q 017179 282 MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH--MPVSEYITPEA-FERYRALGMEMGFRYVASGPMVRSSYKA 358 (376)
Q Consensus 282 mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~--~~v~~~v~pe~-~~~l~~~a~~~gf~~~~sgp~vrssy~a 358 (376)
+=|+--++|++.+..++|+.+..|+|-+--|++|+... ++..+.+.-++ .+.-+.++...|+.++..-.-.|....+
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~l~~~~~sr~~ll~ 261 (296)
T COG0731 182 VKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVLLA 261 (296)
T ss_pred eccccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeeeeeccCCceEEEcc
Confidence 77787788889999999999999999999999985322 33333222222 2233344444456665444444554444
No 134
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.56 E-value=4.7e-06 Score=83.37 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=123.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-CCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC--CCcE
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-GLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK--PNML 210 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~--p~i~ 210 (376)
-+.+|+.+|.||......-...++.+||++.+..+.+. .+++|+++| |+.-+. .+...+.++.|.+.. +.-.
T Consensus 102 sQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N----~d~vl~ai~~l~~~~~i~~r~ 177 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHN----LDNVLEAIDLLGTEGGIGHKN 177 (344)
T ss_pred ccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCC----HHHHHHHHHHhhchhcCCCce
Confidence 47899999999976543212248899999988776654 589999999 764322 234445444444321 2222
Q ss_pred EEEecCCCCCChHHHHHHHHcCcc-cccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLN-VFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG 286 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG 286 (376)
|-+++ .|..+.+.+|.+.++. .+...+++. ++++.++.| ++++.++.++.++...+....-+.+-.-+|=|+-
T Consensus 178 itiST---~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVN 254 (344)
T PRK14464 178 LVFST---VGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVN 254 (344)
T ss_pred EEEec---ccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCC
Confidence 22222 1245567777765433 234456655 488887775 4678899989888776653221222333444789
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.+.|+..++.+.|+.+.+. |.+-+| .|. .+.... .+.+++.+.+++.-.+.|+..
T Consensus 255 Ds~e~a~~L~~~l~~~~~~-vNLIPy-N~v-~g~~~~-rp~~~~i~~f~~~L~~~gi~~ 309 (344)
T PRK14464 255 DSDEEMDGIVRLLKGKYAV-MNLIPY-NSV-DGDAYR-RPSGERIVAMARYLHRRGVLT 309 (344)
T ss_pred CCHHHHHHHHHHHhccccc-cceecC-Ccc-CCCCcc-CCCHHHHHHHHHHHHHCCceE
Confidence 9999999999999977653 333344 331 222222 244667777777767777644
No 135
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=98.55 E-value=2.3e-06 Score=87.04 Aligned_cols=189 Identities=18% Similarity=0.270 Sum_probs=129.5
Q ss_pred eeeCCccCCC----CcCCCCCCCCCCCCCCchhHHHHHHHHHHCCCcEEEEEeee------CCC----CCcccHHHHHHH
Q 017179 133 MILGDTCTRG----CRFCNVKTSRAPPPPDPDEPTNVAEAIASWGLDYVVITSVD------RDD----LADQGSGHFAQT 198 (376)
Q Consensus 133 m~i~d~C~~~----C~FC~v~~~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~------r~d----l~d~g~~~~~el 198 (376)
|-...+|.+. |+||.=+.-..+...++|.++++++++.+.|++++.|-=+. .++ .|.-..+-+.++
T Consensus 187 iETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL 266 (560)
T COG1031 187 IETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKL 266 (560)
T ss_pred EeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHH
Confidence 4457899987 99998775433445899999999999999999999874331 111 111125678888
Q ss_pred HHHHHhhCCCcEE-EE--ecCCCCC-----ChHHHHHHHHcC--cccccccccchH-HHHHhhcCCCCCHHHHHHHHHHH
Q 017179 199 VRKLKELKPNMLI-EA--LVPDFRG-----NNGCVREVAKSG--LNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 199 vr~Ik~~~p~i~I-e~--l~pd~~g-----~~e~l~~L~~aG--ld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
.+.|+...|++.+ ++ .-|.... +.+.++.+..-| -|+.+.++||.| ++.+.=+ -..+.++.++.++..
T Consensus 267 ~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~Nn-L~~spEEvl~AV~iv 345 (560)
T COG1031 267 FRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNN-LNASPEEVLEAVEIV 345 (560)
T ss_pred HHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhcc-ccCCHHHHHHHHHHH
Confidence 9999988887643 21 1221111 244555555443 377888899987 7766544 688999999999999
Q ss_pred HHhCC----CCc---eEEEeEEEec-CCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcc
Q 017179 268 KDYVP----AGT---LTKTSIMLGC-GETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSE 324 (376)
Q Consensus 268 k~~~p----~Gi---~tkt~imvGl-GET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~ 324 (376)
-++.. +|+ .-..++++|| |||.|-+.-..++|+++= +..|++-|-+ + ..++++.+
T Consensus 346 n~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~-~-fpgT~~~~ 413 (560)
T COG1031 346 NEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVV-V-FPGTPMWE 413 (560)
T ss_pred HHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEe-e-cCCCchhh
Confidence 88743 133 3478999999 999999998888888763 2456665553 2 23555554
No 136
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.54 E-value=4.7e-06 Score=81.04 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHH---CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~---~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
++.+++.+.++.... .+...|.||||+.--. .+.+.++++.+++. ++.+.+.+--+. ..+.+..+... +
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~----~~~l~~l~~~~k~~--g~~~~i~TnG~~-~~~~~~~ll~~-~ 177 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ----PEFALALLQACHER--GIHTAVETSGFT-PWETIEKVLPY-V 177 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch----HHHHHHHHHHHHHc--CCcEeeeCCCCC-CHHHHHHHHhh-C
Confidence 567777776655432 2456899999874311 23346889998875 355555554332 34667776653 6
Q ss_pred ccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC--CcEEEee
Q 017179 234 NVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG--VDVMTFG 310 (376)
Q Consensus 234 d~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~--vd~v~~~ 310 (376)
|.+...++.. ++.|.+++ +.+++..++.|+.+.+.... +.+.+.+|-|+-.+.+|+.+.++++++++ ++.+.+.
T Consensus 178 d~~~isl~~~~~~~~~~~~--g~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~ 254 (295)
T TIGR02494 178 DLFLFDIKHLDDERHKEVT--GVDNEPILENLEALAAAGKN-VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLL 254 (295)
T ss_pred CEEEEeeccCChHHHHHHh--CCChHHHHHHHHHHHhCCCc-EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEec
Confidence 7777777765 48888887 35789999999999884222 44555566677788899999999999998 7788886
Q ss_pred cCC
Q 017179 311 QYM 313 (376)
Q Consensus 311 qY~ 313 (376)
+|.
T Consensus 255 ~~~ 257 (295)
T TIGR02494 255 PYH 257 (295)
T ss_pred CCC
Confidence 664
No 137
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.52 E-value=1.4e-05 Score=80.38 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=126.6
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC------CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW------GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN 208 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~------G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~ 208 (376)
-+.||..+|.||+-....-...++++||++.+..+... .+..||+.|+--+ +. ..+.+.+.++.+++.. +
T Consensus 116 sQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP-L~--N~d~v~~~l~~l~~~~-G 191 (356)
T PRK14462 116 SQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP-LD--NLDNVSKAIKIFSEND-G 191 (356)
T ss_pred ccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc-cc--CHHHHHHHHHHhcCcc-C
Confidence 46799999999976543212248999999988765442 2568888844222 21 2456778888887642 2
Q ss_pred c-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 209 M-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 209 i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
+ +|.+.|-.+ .+.+++|.+.++.+ +.+.+... ++.++++.| +++..++.++.++...+....-+.+.-
T Consensus 192 l~~~~r~itVsTsG~---~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~iey 268 (356)
T PRK14462 192 LAISPRRQTISTSGL---ASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEY 268 (356)
T ss_pred CCcCCCceEEECCCC---hHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 3 444455333 35677787764421 34445544 488888875 345668888877644322222256677
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+|=|+-.++||..++.++++.+++ .|.+-+| .|. ...+. +.+.+++.+.++++..+.|+..
T Consensus 269 vLI~GvNDs~e~a~~La~llk~l~~-~VnLIPy-n~~-~~~~~-~~ps~e~i~~f~~~l~~~gi~v 330 (356)
T PRK14462 269 LVIKDVNDDLKSAKKLVKLLNGIKA-KVNLILF-NPH-EGSKF-ERPSLEDMIKFQDYLNSKGLLC 330 (356)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCc-EEEEEeC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 7888999999999999999999875 5666554 231 11122 2345677888887777666644
No 138
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.47 E-value=5.2e-05 Score=76.78 Aligned_cols=200 Identities=11% Similarity=0.135 Sum_probs=124.1
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC--------C--CcEEEEEeeeCCCCCcccHHHHHHHHHHHHh
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW--------G--LDYVVITSVDRDDLADQGSGHFAQTVRKLKE 204 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~--------G--~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~ 204 (376)
-+-||+.+|.||+-+...-...++.+||++.+..+... | ++.||+.|+--|-+ ..+.+.+.++.+++
T Consensus 109 sQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~---N~d~v~~al~~l~~ 185 (372)
T PRK11194 109 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL---NLNNVVPAMEIMLD 185 (372)
T ss_pred cCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc---CHHHHHHHHHHHhh
Confidence 35899999999986643212248999999887655421 2 78999988532211 13455666777764
Q ss_pred hCC-Cc---EEEEecCCCCCChHHHHHHHHcCcc-cccccccc-hHHHHHhhcCC--CCCHHHHHHHHHHHHHhCC---C
Q 017179 205 LKP-NM---LIEALVPDFRGNNGCVREVAKSGLN-VFAHNIET-VEELQSAVRDH--RANFKQSLDVLMMAKDYVP---A 273 (376)
Q Consensus 205 ~~p-~i---~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lEt-v~~l~~~vr~r--~~t~e~~L~vl~~ak~~~p---~ 273 (376)
... ++ +|.+.|-. ....+..|.+.. + .+...+.. .++.++++.|. ++..++.++.++...+..+ .
T Consensus 186 ~~g~~i~~r~itVsTsG---~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 186 DFGFGLSKRRVTLSTSG---VVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred hhccCcCCCeEEEECCC---CchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 331 12 55555432 234566676543 3 23334554 45888888753 3455777766555444321 1
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 274 Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+.+..-+|=|+-.+++++.++.++++.+++ .|.+-+| .|. .+.+. +.+.++..+.+.++..+.|+..
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~~-~VnLIPY-N~~-~~~~~-~~ps~e~v~~f~~~L~~~Gi~v 329 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTPC-KINLIPW-NPF-PGAPY-GRSSNSRIDRFSKVLMEYGFTV 329 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEecC-CCC-CCCCC-CCCCHHHHHHHHHHHHHCCCeE
Confidence 2678888899999999999999999999864 5555444 231 12222 2345667788888877777754
No 139
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.43 E-value=2.6e-07 Score=88.13 Aligned_cols=172 Identities=19% Similarity=0.242 Sum_probs=119.2
Q ss_pred EEEEee--eCCccCCCCcCCCCCCCC--CCC--CCCchhHHHHHHHHHHCCCcEEEEEeee---CCCCCcccHHHHHHHH
Q 017179 129 TATIMI--LGDTCTRGCRFCNVKTSR--APP--PPDPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQGSGHFAQTV 199 (376)
Q Consensus 129 tat~m~--i~d~C~~~C~FC~v~~~r--~~~--~l~~eEi~~~a~al~~~G~~eIvLTsg~---r~dl~d~g~~~~~elv 199 (376)
.-||+- +++.|+.+|.||++..++ .|. .+...||++++...+..|++.+.||||+ +.|..+ .+
T Consensus 9 ~htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~--------i~ 80 (323)
T KOG2876|consen 9 EHTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVP--------IV 80 (323)
T ss_pred hhhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccc--------hh
Confidence 345554 579999999999999876 232 2788999999999999999999999997 344322 22
Q ss_pred HHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE
Q 017179 200 RKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK 278 (376)
Q Consensus 200 r~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk 278 (376)
..+.. .|++.--..++.-.-....+-.+.++|++.++..+++.. .-+.++. ++.++...+.-++.+.+..-+ +++
T Consensus 81 ~g~~~-l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~-rr~g~v~V~~~iq~a~~lgy~--pvk 156 (323)
T KOG2876|consen 81 AGLSS-LPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLT-RRKGFVKVWASIQLAIELGYN--PVK 156 (323)
T ss_pred hhhhc-ccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHh-hhccHHHHHHHHhHHhhhCCC--Ccc
Confidence 22211 122211112221111345678899999999999999754 7777777 688999999999999875332 356
Q ss_pred EeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 279 TSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 279 t~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++..+-=|-.+.|+.+....=+..++|+..+ .||
T Consensus 157 vn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfI-e~m 190 (323)
T KOG2876|consen 157 VNCVVMKGLNEDEVFDFVLLTRMRPLDVRFI-EFM 190 (323)
T ss_pred eeeEEEeccCCCcccceeeecCCCCcceEEE-Eec
Confidence 6665555666677777777777777777666 555
No 140
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.41 E-value=4.8e-05 Score=76.24 Aligned_cols=203 Identities=10% Similarity=0.137 Sum_probs=123.4
Q ss_pred EEeeeCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH-C--CCcEEE-EEeeeCCCCCcccHHHHHHHHHHHHhhC
Q 017179 131 TIMILGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-W--GLDYVV-ITSVDRDDLADQGSGHFAQTVRKLKELK 206 (376)
Q Consensus 131 t~m~i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~--G~~eIv-LTsg~r~dl~d~g~~~~~elvr~Ik~~~ 206 (376)
..+..+.||+.+|.||+-....-...++++||++.+..... + .++.|| +.||+.-. ..+.+.++++.+++..
T Consensus 103 ~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLl----n~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 103 ICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLD----NYENVMKFLKIVNSPY 178 (342)
T ss_pred EEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhc----CHHHHHHHHHHHhccc
Confidence 34556789999999997654321224899999998877654 2 355655 45554321 1455777888887532
Q ss_pred CCc-----EEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 207 PNM-----LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 207 p~i-----~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
++ ++.+.|-.+ ...+..+.+.++.+ +...+-.. ++.++++.| .++..++.++.++........-+.+
T Consensus 179 -gi~~~~r~itvsTsG~---~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~i 254 (342)
T PRK14454 179 -GLNIGQRHITLSTCGI---VPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITF 254 (342)
T ss_pred -ccCcCCCceEEECcCC---hhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEE
Confidence 23 445555333 22366777654321 34445444 477888775 3455666666665422221111445
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.--+|=|+-.+++|+.+..++++.+.+ .|.+-+| .|.. ..+. +.+.+++.+.+.++..+.|+..
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~~-~VnLiPy-n~~~-~~~~-~~ps~e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGMLC-HVNLIPV-NEVK-ENGF-KKSSKEKIKKFKNILKKNGIET 318 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCCc-eEEEEec-CCCC-CCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 666777899999999999999998753 4555444 2311 1121 2345678888888888878755
No 141
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.34 E-value=0.00011 Score=73.69 Aligned_cols=198 Identities=10% Similarity=0.057 Sum_probs=123.8
Q ss_pred eCCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHH---CCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC----
Q 017179 135 LGDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS---WGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK---- 206 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~---~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~---- 206 (376)
-+.||+.+|+||+-....-...++.+||+..+-.+.+ ..+..||+-| |+.-+ ..+.+.+.++.|+...
T Consensus 111 sQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~----N~d~V~~~~~~l~~~~~~~~ 186 (342)
T PRK14465 111 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMH----NYFNVIRAASILHDPDAFNL 186 (342)
T ss_pred ecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchh----hHHHHHHHHHHHhChhhhcC
Confidence 4679999999998765432234889999988766654 3589999999 65321 1344555666665431
Q ss_pred CCcEEEEecCCCCCChHHHHHHHHcCc-ccccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 207 PNMLIEALVPDFRGNNGCVREVAKSGL-NVFAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 207 p~i~Ie~l~pd~~g~~e~l~~L~~aGl-d~i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
..-+|.+.+-. ....+..+.+... -.++..+...+ +.+.++-| +++..++.++.++...+....-+.+.--+|
T Consensus 187 ~~r~itvST~G---~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI 263 (342)
T PRK14465 187 GAKRITISTSG---VVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMI 263 (342)
T ss_pred CCCeEEEeCCC---chHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 11255555532 2344566664322 24566677654 88888754 578899999999866643322133344455
Q ss_pred EecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 283 LGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 283 vGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
=|+-.++||+.+..++++.+++. |.+-+|= |. .... +.+++++.+.++++-.+.|+.
T Consensus 264 ~GvNDs~eda~~L~~ll~~l~~k-VnLIPyN-~~--~~~~-~~ps~e~i~~F~~~L~~~Gi~ 320 (342)
T PRK14465 264 PGVNMGRENANKLVKIARSLDCK-INVIPLN-TE--FFGW-RRPTDDEVAEFIMLLEPAGVP 320 (342)
T ss_pred CCccCCHHHHHHHHHHHhhCCCc-EEEEccC-CC--CCCC-CCCCHHHHHHHHHHHHHCCCe
Confidence 57788999999999999997643 4443442 31 2222 224566777777776666654
No 142
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.27 E-value=9.8e-05 Score=69.27 Aligned_cols=180 Identities=8% Similarity=0.059 Sum_probs=127.0
Q ss_pred CCCchhHHHHHHHHHH---CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIAS---WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~---~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
.++++|+++.+..-.. .+-.-|++|||+.--. .+.+.++++.+|+. ++.+.+-+.-+. +.+.++.+...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq----~~fl~~l~~~~k~~--gi~~~leTnG~~-~~~~~~~l~~~- 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ----AEFATRFLQRLRLW--GVSCAIETAGDA-PASKLLPLAKL- 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC----HHHHHHHHHHHHHc--CCCEEEECCCCC-CHHHHHHHHHh-
Confidence 3889999988776433 2556899999974211 45567899999875 466665554332 56677777654
Q ss_pred cccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 233 LNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 233 ld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+|.+..-+=.. ++.|+++. +.+.+..++.++.+.+.... +.+.+-+|=|+--++|++....+++++++++-+.+-+
T Consensus 90 ~D~~l~DiK~~d~~~~~~~t--G~~~~~il~nl~~l~~~g~~-v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llp 166 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVV--KMNLPRVLENLRLLVSEGVN-VIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLP 166 (213)
T ss_pred cCEEEEeeccCCHHHHHHHH--CCCHHHHHHHHHHHHhCCCc-EEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 56555444444 48888887 47789999999999885433 6789999999988999999999999999888777766
Q ss_pred CCCCCC--------CCCCCcc--cCChHHHHHHHHHHHHHhhhhhc
Q 017179 312 YMRPSK--------RHMPVSE--YITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 312 Y~~P~~--------~~~~v~~--~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
|- |.. ...++.. ..+++..+.+++++.+.|+.++.
T Consensus 167 yh-~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 167 FH-QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CC-ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 53 310 0122322 24567788889999988887653
No 143
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.26 E-value=0.00015 Score=73.02 Aligned_cols=198 Identities=13% Similarity=0.171 Sum_probs=125.0
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHHHC-----------------CCcEEEEEeeeCCCCCcccHHHHHHH
Q 017179 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIASW-----------------GLDYVVITSVDRDDLADQGSGHFAQT 198 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~~-----------------G~~eIvLTsg~r~dl~d~g~~~~~el 198 (376)
+-||.-+|+||+-...+-..-|+..||+..+..+.+. .++.||+-|---| ...|-++
T Consensus 114 QvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP------L~NydnV 187 (371)
T PRK14461 114 QAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP------FANYDRW 187 (371)
T ss_pred cCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc------hhhHHHH
Confidence 5699999999976654322349999999887665421 2678888765222 3345555
Q ss_pred HHHHHhhC-C------CcEEEEecCCCCCChHHHHHHHHcCccc-ccccccch-HHHHHhhcC--CCCCHHHHHHHHHHH
Q 017179 199 VRKLKELK-P------NMLIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETV-EELQSAVRD--HRANFKQSLDVLMMA 267 (376)
Q Consensus 199 vr~Ik~~~-p------~i~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~a 267 (376)
+++|+-.. | .-+|-+++-. ....+++|.+.++.+ ++..+... ++++.++-| +++..++.++.++..
T Consensus 188 ~~ai~il~d~~g~~is~R~ITVST~G---ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y 264 (371)
T PRK14461 188 WQAVERLHDPQGFNLGARSMTVSTVG---LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDY 264 (371)
T ss_pred HHHHHHhcCccccCcCCCceEEEeec---chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 65555332 2 1133344422 345678888766542 45556654 488888776 688899999998887
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-----CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-----VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-----vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
-+....-+.+-=-+|=|+-.++||..++.+.|+.++ ...|++-+| .|. .+.+.. .+.+++.+.+.++-.+.|
T Consensus 265 ~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~-Np~-~~~~~~-~ps~~~i~~F~~~L~~~g 341 (371)
T PRK14461 265 IAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW-NPV-PGTPLG-RSERERVTTFQRILTDYG 341 (371)
T ss_pred HHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC-CCC-CCCCCC-CCCHHHHHHHHHHHHHCC
Confidence 654333233444556677999999999999999872 235555444 342 233322 245677777777777777
Q ss_pred hhh
Q 017179 343 FRY 345 (376)
Q Consensus 343 f~~ 345 (376)
+..
T Consensus 342 i~v 344 (371)
T PRK14461 342 IPC 344 (371)
T ss_pred ceE
Confidence 643
No 144
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.24 E-value=3.2e-05 Score=76.00 Aligned_cols=173 Identities=18% Similarity=0.343 Sum_probs=117.7
Q ss_pred cEEEEeeeCCccC----CCCcCCCCCCCCCCCCCCchhHHHHHHHHHH-CC--CcE---EEEEeee---CCCCCcccHHH
Q 017179 128 ATATIMILGDTCT----RGCRFCNVKTSRAPPPPDPDEPTNVAEAIAS-WG--LDY---VVITSVD---RDDLADQGSGH 194 (376)
Q Consensus 128 ~tat~m~i~d~C~----~~C~FC~v~~~r~~~~l~~eEi~~~a~al~~-~G--~~e---IvLTsg~---r~dl~d~g~~~ 194 (376)
++.|++.-+.||. .+|.+|+......+.+.+.+++.+....+.+ .. ..+ -++|||- ....|+. -
T Consensus 46 k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e---~ 122 (358)
T COG1244 46 KSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPRE---A 122 (358)
T ss_pred ceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHH---H
Confidence 3666666688885 4699999987644567888999887765543 22 233 3569984 2234432 2
Q ss_pred HHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHHHc--Ccc-cccccccchH-HHH-HhhcCCCCCHHHHHHHHHHH
Q 017179 195 FAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKS--GLN-VFAHNIETVE-ELQ-SAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 195 ~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld-~i~h~lEtv~-~l~-~~vr~r~~t~e~~L~vl~~a 267 (376)
-..+++.|.+.. -.+.|| .-|+|. ++|.|..+.+- |.. -+++++||++ ++. ..|+ .+.+++++++..+.+
T Consensus 123 R~~Il~~is~~~~v~~vvvE-SRpE~I-~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sIN-KGftF~df~~A~~~i 199 (358)
T COG1244 123 RRYILERISENDNVKEVVVE-SRPEFI-REERLEEITEILEGKIVEVAIGLETANDKIREDSIN-KGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHHHHhhccceeEEEee-cCchhc-CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhh-cCCcHHHHHHHHHHH
Confidence 233455555432 124444 456776 68888888866 432 2688899986 776 5688 799999999999999
Q ss_pred HHhCCCCceEEEeEEEec-----CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 268 KDYVPAGTLTKTSIMLGC-----GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGl-----GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++ .|+.++|.+|+=. .|..+|++.++. ..+-+.|.|.|-
T Consensus 200 r~---~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSin 243 (358)
T COG1244 200 RN---YGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISIN 243 (358)
T ss_pred HH---cCCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEec
Confidence 98 4789999999865 455667777777 445567888874
No 145
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.21 E-value=7.2e-05 Score=71.06 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=115.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|+++|-++++..+..... .....+.++++++..+++.+.++... ..+.++.++++|++.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~-~~~~~~~i~~l~~~~~~~~~~~l~~~---~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ-MEDDWEVLRAIRKLVPNVKLQALVRN---REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCcccccc-CCCHHHHHHHHHhccCCcEEEEEccC---chhhHHHHHhCCcCE
Confidence 47999999999999999999999999875422100 12256788888887777888777653 267899999999999
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+.+++ ....+.+ ++...++..++.++.+++ .|+.+..+++.-++ .+.+++.+.++.+.+++++.+.+.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 999888776 2222222 122367888899999998 57888888888888 999999999999999999998874
No 146
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.20 E-value=3.4e-05 Score=74.82 Aligned_cols=199 Identities=14% Similarity=0.237 Sum_probs=119.9
Q ss_pred CccCCCCcCCCCCC---CCCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE
Q 017179 137 DTCTRGCRFCNVKT---SRAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA 213 (376)
Q Consensus 137 d~C~~~C~FC~v~~---~r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~ 213 (376)
.+|+.+|-||--.- .+.....+++++.++...+.+.|.+-|-+.||+..- . ...+++.++.+....|.++..-
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp--~--lp~Ile~l~~~~~~iPvvwNSn 201 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP--H--LPFILEALRYASENIPVVWNSN 201 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC--c--hHHHHHHHHHHhcCCCEEEecC
Confidence 49999999995332 221224899999999999999999999999997421 1 3357777777766556555432
Q ss_pred ecCCCCCChHHHHHHHHcCccccccccc-chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHH
Q 017179 214 LVPDFRGNNGCVREVAKSGLNVFAHNIE-TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQ 291 (376)
Q Consensus 214 l~pd~~g~~e~l~~L~~aGld~i~h~lE-tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET-~ee 291 (376)
. + -+.|.++.|... +|++-.-+- .-++.-.+...-+.=++-..+.+..+.+..+ |+.+.--+|=|+-|. -..
T Consensus 202 m---Y-~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPghlecCTkp 275 (335)
T COG1313 202 M---Y-MSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPGHLECCTKP 275 (335)
T ss_pred C---c-cCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCCchhhccHH
Confidence 1 1 156666655332 565532221 1122222222111224444555666666433 488888888888776 555
Q ss_pred HHHHHHHHHHcCCcEEEeecCCCCCCCC--C-CCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 292 VVSTMEKVRAAGVDVMTFGQYMRPSKRH--M-PVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 292 ~~e~L~~Lrel~vd~v~~~qY~~P~~~~--~-~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+++-+...-...+-+=-++|| +|.-+. . .+.+.++.++.+...++|++.||...
T Consensus 276 I~~wiae~~g~~~~vNiM~QY-~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~ 332 (335)
T COG1313 276 ILRWIAENLGNDVRVNIMFQY-RPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNI 332 (335)
T ss_pred HHHHHHHhCCCCeeEEehhhc-cchhhhhhchhhcccCCHHHHHHHHHHHHHcCCcee
Confidence 554443332222222223577 575333 2 26677899999999999999998653
No 147
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.16 E-value=0.00011 Score=72.24 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=106.1
Q ss_pred eCCccCCCCcCCCCCCCCC--CC---CCCchh-HHHHHHH-HHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 135 LGDTCTRGCRFCNVKTSRA--PP---PPDPDE-PTNVAEA-IASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~--~~---~l~~eE-i~~~a~a-l~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..-||..+|.||-...... +. .+..++ +.+.++. +.+-|. ..|.+.+...+..+.--...+..-+.++...
T Consensus 35 py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~ 114 (297)
T COG1533 35 PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK 114 (297)
T ss_pred CcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3469999999997764321 11 234555 5555543 443344 4555544444444421111222222223222
Q ss_pred CCCcEEEEec--CCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 206 KPNMLIEALV--PDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 206 ~p~i~Ie~l~--pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
. +..+.+.| +-...+.+.+..+..-+.-.+...+-|.+ ++-+.+-|+..+.+.++++++.+.+ .|+ .++++
T Consensus 115 ~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~e---aGi--~~~v~ 188 (297)
T COG1533 115 Y-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSE---AGI--PVGLF 188 (297)
T ss_pred c-CCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHH---CCC--eEEEE
Confidence 2 34444444 21222456677776666555666677765 6888888888899999999999999 674 66666
Q ss_pred Eec---CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 283 LGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 283 vGl---GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|+= |.+|+|+.+.+..+.+.++..+..+
T Consensus 189 v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~ 219 (297)
T COG1533 189 VAPIIPGLNDEELERILEAAAEAGARVVVYG 219 (297)
T ss_pred EecccCCCChHHHHHHHHHHHHcCCCeeEee
Confidence 664 9999999999999999999876653
No 148
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.03 E-value=0.0005 Score=69.83 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCc-cCCCCcCCCCCCCCCCC-CCCchhHHHHHHHHHHC-CCcE--EEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCc
Q 017179 136 GDT-CTRGCRFCNVKTSRAPP-PPDPDEPTNVAEAIASW-GLDY--VVITSVDRDDLADQGSGHFAQTVRKLKELK-PNM 209 (376)
Q Consensus 136 ~d~-C~~~C~FC~v~~~r~~~-~l~~eEi~~~a~al~~~-G~~e--IvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i 209 (376)
+.. |+.+|.||-........ .++.+.+++.++.+.+. +.+. |...||+.- +. | ..|.+.+..+.+++ .+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPl-L~--~-~~f~~~~~~l~~k~~~~~ 89 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPL-LA--G-LDFYRKAVALQQKYANGK 89 (378)
T ss_pred ccCccCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccc-cc--h-HHHHHHHHHHHHHHhcCC
Confidence 344 99999999888643222 38888888888877654 4466 777888742 21 1 23445454444333 244
Q ss_pred EEE--EecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhc---CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 210 LIE--ALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 210 ~Ie--~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr---~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
.|. +.+-...-+++..+.|++.+. .+.+.||..+++..+.| ..+.|++..++.|+.+++. ++.+.+.++
T Consensus 90 ~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~---~v~~~~~~v-- 163 (378)
T COG0641 90 TISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH---GVDFNTLTV-- 163 (378)
T ss_pred eeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc---CCcEEEEEE--
Confidence 444 334322227888999999998 78888988766665554 2478999999999999993 455555555
Q ss_pred c-CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCC-C-CcccCChHHHHHH
Q 017179 285 C-GETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHM-P-VSEYITPEAFERY 334 (376)
Q Consensus 285 l-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~-~-v~~~v~pe~~~~l 334 (376)
+ -++.+...+.+++|.+.++..+-|-+-+ ++.... + ....++++++..+
T Consensus 164 v~~~n~~~~~ei~~~l~~~g~~~i~fip~~-~~~~~~~~~~~~~~~~~~~~~f 215 (378)
T COG0641 164 VNRQNVLHPEEIYHFLKSEGSKFIQFIPLV-ESDNRGDSLLEFSVTAEEYGQF 215 (378)
T ss_pred EchhHhhCHHHHHHHHHHcccceEEEEecc-cCCCCCccccccccCHHHHHHH
Confidence 4 6888888889999999886666552222 222222 2 2344666665444
No 149
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.99 E-value=0.00015 Score=73.38 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=130.0
Q ss_pred ccCCC---CcCCCCCCC--CCCCCCCchhHHHHHHHHHHCCCc-----EEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-
Q 017179 138 TCTRG---CRFCNVKTS--RAPPPPDPDEPTNVAEAIASWGLD-----YVVITSVDRDDLADQGSGHFAQTVRKLKELK- 206 (376)
Q Consensus 138 ~C~~~---C~FC~v~~~--r~~~~l~~eEi~~~a~al~~~G~~-----eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~- 206 (376)
-|... |.||..... ++ ....+..+++... .++|++ .+..+ +.++..- .-++.+.++.....+
T Consensus 36 ~c~~~~~~C~~cy~~v~~~~~-~~~~~~~v~~e~~--~~lg~~~e~~~~~~~~-~~~d~~c---~p~le~~~~r~~~~~~ 108 (414)
T COG1625 36 DCIPYRFGCDDCYLSVNELDT-GFIPPLMVEKEPD--EDLGLEFEEVLGAKQC-GNGDTFC---YPDLEPRGRRARLYYK 108 (414)
T ss_pred cCCCccccccceeeEEecccC-CCCCHhHhhcccc--cccccccccccceeec-CCCCccc---CcchhhhhhHHHhhcC
Confidence 34455 888876642 22 2244455544433 234442 22222 2233222 234667788777766
Q ss_pred -CCcEEEEecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 207 -PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 207 -p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
+++++..+.+.+.-+.+..+.+.++|+|-+...+.|. +++++++- +....++.++.|+...+ .++.+-+.+++=
T Consensus 109 d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm-~n~~A~~~le~L~~f~~---~~~~v~a~iVl~ 184 (414)
T COG1625 109 DDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLM-KNPNAEQLLELLRRFAE---RCIEVHAQIVLC 184 (414)
T ss_pred CccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHh-cCCcHHHHHHHHHHHHH---hhhheeeEEEEc
Confidence 3467776777665567788889999999999998865 49998876 57788999999999988 457889999887
Q ss_pred cCCC-HHHHHHHHHHHHHcCCcEEEeecCCCC---CCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 285 CGET-PDQVVSTMEKVRAAGVDVMTFGQYMRP---SKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 285 lGET-~ee~~e~L~~Lrel~vd~v~~~qY~~P---~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
=|-+ -+++.+++.+|.+.+...+.+.. ..| +....++-+.++|+..++++.+++++
T Consensus 185 PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~ 244 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRPGIRPPTPHELEEFKEIVREF 244 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhCcCceeEEE-eecceeeecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 7888 89999999999999987666643 235 12223366778888888887666543
No 150
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00027 Score=70.51 Aligned_cols=180 Identities=17% Similarity=0.283 Sum_probs=114.9
Q ss_pred ChhhhhhhcCCCCcccccCCCCCCccEEEEeeeCCccCCCCcCCCCCCCCCCC--CCCchhHHHHHHHHHHC-CCcEEEE
Q 017179 103 KLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAPP--PPDPDEPTNVAEAIASW-GLDYVVI 179 (376)
Q Consensus 103 ~L~tvce~A~cpn~~ec~~~~~~~~~tat~m~i~d~C~~~C~FC~v~~~r~~~--~l~~eEi~~~a~al~~~-G~~eIvL 179 (376)
..--++|...+|--+- .|-+.....|+.+++|.-.|+||--+..-+.. .+..+++....+.+++- -+++|+|
T Consensus 90 ~~Dpl~E~~~s~Vpgl-----~HrY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVll 164 (369)
T COG1509 90 SEDPLGEDDSSPVPGL-----THRYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLL 164 (369)
T ss_pred ccCcccccccCCCCCc-----eeecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEe
Confidence 3445566666665541 23355677788899999999999766542221 26888888888888765 4799999
Q ss_pred EeeeCCCCCcccHHHHHHHHHHHHhhCC--CcEEEE----ecCCCCCChHHHHHHHHcCcccc--cccccchHHHHHhhc
Q 017179 180 TSVDRDDLADQGSGHFAQTVRKLKELKP--NMLIEA----LVPDFRGNNGCVREVAKSGLNVF--AHNIETVEELQSAVR 251 (376)
Q Consensus 180 Tsg~r~dl~d~g~~~~~elvr~Ik~~~p--~i~Ie~----l~pd~~g~~e~l~~L~~aGld~i--~h~lEtv~~l~~~vr 251 (376)
||||.--+.| ..+..++++|.+... .++|.. ..|.-. +++..+.|.+++..++ .| +....++.+..
T Consensus 165 SGGDPL~ls~---~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RI-t~~L~~~l~~~~~~v~~~tH-~NHp~Eit~e~- 238 (369)
T COG1509 165 SGGDPLSLSD---KKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRI-TDELCEILGKSRKPVWLVTH-FNHPNEITPEA- 238 (369)
T ss_pred cCCCccccCH---HHHHHHHHHHhcCCceeEEEeecccceechhhc-cHHHHHHHhccCceEEEEcc-cCChhhcCHHH-
Confidence 9998766665 457777777766431 134433 344332 5667777776554432 22 22223333322
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017179 252 DHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 252 ~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd 305 (376)
.+.++.++. .|+.+ -|=++=|...+.+-+.++++.|.+++|-
T Consensus 239 ---------~~A~~~L~~---aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 239 ---------REACAKLRD---AGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred ---------HHHHHHHHH---cCceeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 255555665 46654 3445668889999999999999999964
No 151
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.94 E-value=0.00013 Score=69.35 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=81.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-C--CC-C--CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS-R--AP-P--PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~-r--~~-~--~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
.+.|+- ..+|+.+|.||..+.. . .. . .++.+|+++.++.+...|++.|+||||+.- +. .++.++++.+
T Consensus 23 ~~~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPl-l~----~~l~~li~~l 96 (238)
T TIGR03365 23 KTMFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPA-LQ----KPLGELIDLG 96 (238)
T ss_pred eEEEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchh-hh----HhHHHHHHHH
Confidence 455554 5799999999986642 1 11 1 278899999988887778999999999742 11 2478899999
Q ss_pred HhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE
Q 017179 203 KELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM 282 (376)
Q Consensus 203 k~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im 282 (376)
++. ++.+.+.+-... ..+ .+.+ +|.+...+...+. . ....++...+.++.+++ |..+...++
T Consensus 97 ~~~--g~~v~leTNGtl-~~~---~l~~--~d~v~vs~K~~~s-----g-~~~~~~~~~~~ik~l~~----~~~~~vK~V 158 (238)
T TIGR03365 97 KAK--GYRFALETQGSV-WQD---WFRD--LDDLTLSPKPPSS-----G-METDWQALDDCIERLDD----GPQTSLKVV 158 (238)
T ss_pred HHC--CCCEEEECCCCC-cHH---HHhh--CCEEEEeCCCCCC-----C-CCCcHHHHHHHHHHhhh----cCceEEEEE
Confidence 875 456655553321 112 2322 4455444433221 1 12347777777777776 245566666
Q ss_pred Ee
Q 017179 283 LG 284 (376)
Q Consensus 283 vG 284 (376)
|+
T Consensus 159 v~ 160 (238)
T TIGR03365 159 VF 160 (238)
T ss_pred EC
Confidence 66
No 152
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=97.86 E-value=4.5e-05 Score=65.39 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCccCCCCcCCCCCCCCCCC---CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 136 GDTCTRGCRFCNVKTSRAPP---PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~---~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
+++|+.+|.||..+...... .++.+.+.+.++.+...++..|.|+||+. -+. .....+.++++.+++..+
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEP-ll~-~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEP-LLH-ENYDELLEILKYIKEKFP 84 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTG-GGH-HSHHHHHHHHHHHHHTT-
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCe-eee-ccHhHHHHHHHHHHHhCC
Confidence 78899999999876543211 26777777778888889999999999873 231 125679999999999876
No 153
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=97.71 E-value=4.5e-05 Score=63.87 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=45.2
Q ss_pred eCCccCCCCcCCCCCCCCC---CCCCCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc
Q 017179 135 LGDTCTRGCRFCNVKTSRA---PPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM 209 (376)
Q Consensus 135 i~d~C~~~C~FC~v~~~r~---~~~l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i 209 (376)
.+++|+.+|.||....... ...++.+++.+.++.+...+. ..|.||||+.--..+ .+.+.++++.+++..|..
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~--~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLN--PEDLIELIEYLKERGPEI 81 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTT--HHHHHHHHCTSTT-----
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccC--HHHHHHHHHHHHhhCCCc
Confidence 4789999999999754221 124788899999888888877 679999987321122 456889999998887778
Q ss_pred EEEEecC
Q 017179 210 LIEALVP 216 (376)
Q Consensus 210 ~Ie~l~p 216 (376)
.|.+.+-
T Consensus 82 ~i~i~TN 88 (119)
T PF13394_consen 82 KIRIETN 88 (119)
T ss_dssp EEEEEE-
T ss_pred eEEEEeC
Confidence 8877774
No 154
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=97.66 E-value=0.00034 Score=61.96 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=63.6
Q ss_pred EEEEeeeCCccCCCCcCCCCCCC-CC--CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 129 TATIMILGDTCTRGCRFCNVKTS-RA--PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~-r~--~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
..++++.-.+|+.+|.||.-+.. .. ...++.+++.+.++... ..+..|+||||+ +- .+.+.++++.+++.
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE---l~---~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE---WN---REALLSLLKIFKEK 87 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh---cC---HHHHHHHHHHHHHC
Confidence 45555566799999999987743 21 23588999988877754 236899999998 22 45688999999876
Q ss_pred CCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 206 KPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 206 ~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
++.+.+.+... .++..+.+.+. +|.+
T Consensus 88 --Gl~i~l~Tg~~--~~~~~~~il~~-iD~l 113 (147)
T TIGR02826 88 --GLKTCLYTGLE--PKDIPLELVQH-LDYL 113 (147)
T ss_pred --CCCEEEECCCC--CHHHHHHHHHh-CCEE
Confidence 45666566532 33344444332 4443
No 155
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.60 E-value=0.003 Score=61.90 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=105.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++.+.+.|+++|=+++-..+. .|..+ .-.+.++.|.+ .++..+..+.+ +.+.++...++|++
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~--d~~e~~~~l~~-~~~~~~~~l~~----~~~~ie~A~~~g~~ 94 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA--DAAEVMAGIQR-RPGVTYAALTP----NLKGLEAALAAGAD 94 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc--cHHHHHHhhhc-cCCCeEEEEec----CHHHHHHHHHcCCC
Confidence 4899999999999999999999988655444 33211 12567777765 46677777775 56778999999999
Q ss_pred cccccccchHH-HHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecC---C---CHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCG---E---TPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~-l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlG---E---T~ee~~e~L~~Lrel~ 303 (376)
.+...+.+++. ...+++ .+.++ ..++++.|++ .|+.+..+|..-|| + +++.+.+..+.+.+.|
T Consensus 95 ~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~---~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 95 EVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQ---AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG 168 (287)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99888877773 444443 45665 4456777777 47888888887664 2 6789999999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
+|.|.+.
T Consensus 169 ~d~i~l~ 175 (287)
T PRK05692 169 CYEISLG 175 (287)
T ss_pred CcEEEec
Confidence 9998873
No 156
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.41 E-value=0.0023 Score=65.78 Aligned_cols=78 Identities=9% Similarity=0.097 Sum_probs=64.9
Q ss_pred ChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH-HHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP-DQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~-ee~~e~L~~ 298 (376)
+++.++++.+.+++-++..+.+.+ ++..+|- +.....+.++.++.+.+ .||.+.+.+++==|-++ +++.+|+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll-~n~~a~~il~~l~~l~~---~~I~~h~qiVlcPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLL-KNPRAGLILEQLKWFQE---RRLQLHAQVVVCPGINDGKHLERTLRD 202 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHh-CCCCHHHHHHHHHHHHH---cCCeEEEEEEEcCCcCCHHHHHHHHHH
Confidence 467788888888888888888654 8888876 45578999999999988 57999999988778777 689999999
Q ss_pred HHHc
Q 017179 299 VRAA 302 (376)
Q Consensus 299 Lrel 302 (376)
|.++
T Consensus 203 L~~~ 206 (433)
T TIGR03279 203 LAQF 206 (433)
T ss_pred HHhh
Confidence 9988
No 157
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=97.39 E-value=0.0018 Score=57.54 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=50.6
Q ss_pred CccCCCCcCCCCCCCC---CCCCCCchhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC
Q 017179 137 DTCTRGCRFCNVKTSR---APPPPDPDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r---~~~~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p 207 (376)
.+|+.+|.||.-+... ....++.+++.++++.+.+.+ +..|.||||+.-..++ .+.+.++++.+++..+
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~~~ 95 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRN--VEELIELVKKIKAEFP 95 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCC--HHHHHHHHHHHHHhCC
Confidence 6899999999877532 123588777877788877775 6789999997432222 4678899999987654
No 158
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.38 E-value=0.0054 Score=59.64 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++++.+.|+++|-+.+.-.+. .|-. ....++++.|... ++..+.++.+ +.+.++...++|++
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~--~d~~~~~~~l~~~-~~~~~~~~~~----~~~dv~~A~~~g~~ 88 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM--ADAEEVLAGLPRR-PGVRYSALVP----NLRGAERALAAGVD 88 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCHHHHHhhcccC-CCCEEEEECC----CHHHHHHHHHcCcC
Confidence 4889999999999999999999998654433 3321 1123456666543 3577777764 56779999999999
Q ss_pred cccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-----C-CHHHHHHHHHHHHHcCCcE
Q 017179 235 VFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-----E-TPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 235 ~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-----E-T~ee~~e~L~~Lrel~vd~ 306 (376)
.+...+-+++ -+..+++. +....+...+.++.+++ .|+.+..+++.-|| . +.+.+.+.++.+.+.+++.
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~---~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA---AGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9888877777 44455541 11234566677788888 57888888886663 3 5677889999999999999
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
|.+.
T Consensus 166 i~l~ 169 (274)
T cd07938 166 ISLG 169 (274)
T ss_pred EEEC
Confidence 8873
No 159
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.34 E-value=0.001 Score=60.41 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=91.3
Q ss_pred CccCCCCcCCCCCCCCC-CC----CCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcE
Q 017179 137 DTCTRGCRFCNVKTSRA-PP----PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNML 210 (376)
Q Consensus 137 d~C~~~C~FC~v~~~r~-~~----~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~ 210 (376)
-+|+..|.||-....+. +. -++|+|+.+...++ ++.|.+.+.|+|++. - .+.+|+.++|+-+.... ..
T Consensus 49 VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP-~---l~~EHvlevIeLl~~~t--Fv 122 (228)
T COG5014 49 VGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEP-I---LGREHVLEVIELLVNNT--FV 122 (228)
T ss_pred cccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCc-c---ccHHHHHHHHHhccCce--EE
Confidence 48999999997653221 11 27888877665554 577999999998863 2 34689999987763311 12
Q ss_pred EEE--ecCCCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-
Q 017179 211 IEA--LVPDFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC- 285 (376)
Q Consensus 211 Ie~--l~pd~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r-~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl- 285 (376)
++. +.-.| +...+++|.+----.+-..+-.. ++-|.+|..- ..-+..-|+.|+.+++ .|+.+-.-+|.||
T Consensus 123 lETNG~~~g~--drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~---~g~rf~pA~~~~f~ 197 (228)
T COG5014 123 LETNGLMFGF--DRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHG---KGHRFWPAVVYDFF 197 (228)
T ss_pred EEeCCeEEec--CHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHh---cCceeeehhhhccc
Confidence 221 11112 56667777542111122334433 3667777621 1125566888888877 6888899999988
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 017179 286 GETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~ 303 (376)
-|.-+- ++.+.|-+++
T Consensus 198 ~Ed~~k--~Lak~Lgehp 213 (228)
T COG5014 198 REDGLK--ELAKRLGEHP 213 (228)
T ss_pred hhhhHH--HHHHHhccCC
Confidence 443221 2344454544
No 160
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=97.33 E-value=0.011 Score=59.23 Aligned_cols=196 Identities=14% Similarity=0.207 Sum_probs=110.2
Q ss_pred CCccCCCCcCCCCCCCCCCCCCCchhHHHHHHHHH-HCC------CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--
Q 017179 136 GDTCTRGCRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWG------LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-- 206 (376)
Q Consensus 136 ~d~C~~~C~FC~v~~~r~~~~l~~eEi~~~a~al~-~~G------~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-- 206 (376)
+-||.-+|+||+.....--.-|+..||+..+..+. ..| +..||+-|---| +..|..++.++.-..
T Consensus 108 QvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP------l~N~dnV~~a~~i~~~~ 181 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP------LLNLDNVVKALEIINDD 181 (349)
T ss_pred CCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch------hhhHHHHHHHHHhhcCc
Confidence 45999999999877643222489999998877655 223 456776653222 223444555444322
Q ss_pred --CCc---EEEEecCCCCCChHHHHHHHHcCccc-ccccccchH-HHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceE
Q 017179 207 --PNM---LIEALVPDFRGNNGCVREVAKSGLNV-FAHNIETVE-ELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLT 277 (376)
Q Consensus 207 --p~i---~Ie~l~pd~~g~~e~l~~L~~aGld~-i~h~lEtv~-~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~t 277 (376)
.++ +|-+.+..+ ...|.++.+..+++ ++.++.+.+ ++...+-| ++++.++.++.++.-.+.....+..
T Consensus 182 ~G~~ls~R~iTvSTsGi---~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~ 258 (349)
T COG0820 182 EGLGLSKRRITVSTSGI---VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTF 258 (349)
T ss_pred ccccccceEEEEecCCC---chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEE
Confidence 112 233344333 34566676543432 455666554 77666543 5678888888888777653322333
Q ss_pred EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 278 KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 278 kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
-=.++=|.-.+.++-.++.+.|+.+.+ .|++-+| .|. .+... +..+-++.+...++-.+.|+.
T Consensus 259 EY~Ll~~VND~~e~A~~L~~ll~~~~~-~VNLIP~-Np~-~~~~y-~r~~~~~i~~F~~~L~~~gv~ 321 (349)
T COG0820 259 EYVLLDGVNDSLEHAKELAKLLKGIPC-KVNLIPY-NPV-PGSDY-ERSSKERIRKFLKILKKAGVL 321 (349)
T ss_pred EeeecccccCCHHHHHHHHHHhcCCCc-eEEEeec-CCC-CCCCc-cCCcHHHHHHHHHHHHhCCee
Confidence 444555667778888888888888876 4444333 342 23332 222334444444443344443
No 161
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.33 E-value=0.0098 Score=59.83 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++.++-+++++.+.+.|+++|-+++.-.+. .|-. ..-.+.++.|++ .++..+.++.+ +.+.++...++|++
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqm--ad~~ev~~~i~~-~~~~~~~~l~~----n~~die~A~~~g~~ 136 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQL--ADAKDVMAAVRN-LEGARFPVLTP----NLKGFEAAIAAGAK 136 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCccccccc--ccHHHHHHHHHh-ccCCceeEEcC----CHHHHHHHHHcCcC
Confidence 4899999999999999999999988654332 2321 123456666655 34555656665 67889999999999
Q ss_pred cccccccchHHHH-HhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecC------CCHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEELQ-SAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCG------ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~l~-~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlG------ET~ee~~e~L~~Lrel~ 303 (376)
.+...+-+++... .+++ .+.++.+ ++++.+++ .|+.+..++..-|| -+.+.+++.++.+.+.|
T Consensus 137 ~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~---~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G 210 (347)
T PLN02746 137 EVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKK---HSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG 210 (347)
T ss_pred EEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC
Confidence 9988887777433 3333 4566666 57778877 47888877765443 25677889999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
++.|.|.
T Consensus 211 ad~I~l~ 217 (347)
T PLN02746 211 CYEISLG 217 (347)
T ss_pred CCEEEec
Confidence 9998874
No 162
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=97.21 E-value=0.0021 Score=57.20 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred CccCCCCcCCCCCCC-C--CCCCCCchhHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEE
Q 017179 137 DTCTRGCRFCNVKTS-R--APPPPDPDEPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 137 d~C~~~C~FC~v~~~-r--~~~~l~~eEi~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~I 211 (376)
.+|+.+|.||.-+.. . .....+.+.+.++.+.+...+. ..|.||||+.- +. .....+.++++++++..|+..|
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl-~~-~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPL-HP-QNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhCCCCCcEEEECCCcc-ch-hhHHHHHHHHHHHHHHCCCCCE
Confidence 899999999966542 1 1112555555555666666655 78999999752 22 1256788999999988777666
Q ss_pred EEecCC
Q 017179 212 EALVPD 217 (376)
Q Consensus 212 e~l~pd 217 (376)
-+.++-
T Consensus 102 ~~~tGy 107 (154)
T PRK11121 102 WVWTGY 107 (154)
T ss_pred EEecCC
Confidence 556654
No 163
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.20 E-value=0.019 Score=55.40 Aligned_cols=142 Identities=16% Similarity=0.221 Sum_probs=104.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC---
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG--- 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG--- 232 (376)
.++.++....++.+.+.|++.|-+.+... . ...+ +.++.+.+..|++.+.++.. ++.+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---~---~~~~-~~~~~l~~~~~~~~~~~l~r---~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA---S---PGDF-EAVKRIAREVLNAEICGLAR---AVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C---HHHH-HHHHHHHHhCCCCEEEEEcc---CCHhhHHHHHHhCCCC
Confidence 48899999999999999999999875321 1 1122 67888877677888887762 2456678888888
Q ss_pred -cccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 -LNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 -ld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++.+....-+++ .+...++- +....+...+.++.+++ .|+.+.-+.+.+..-+++.+.+.++.+.+++++.+.+
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS---HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 888877666666 55555551 11234556678888888 4777776666666667888899999999999999887
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 163 ~ 163 (268)
T cd07940 163 P 163 (268)
T ss_pred C
Confidence 3
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.17 E-value=0.018 Score=55.23 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|+++|-+.. +...+ . -.+.++.|.+..++..+-.+.. .+.+.++...++|++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~~---~-~~e~~~~l~~~~~~~~~~~~~r---~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMGE---E-EREAIRAIVALGLPARLIVWCR---AVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCCH---H-HHHHHHHHHhcCCCCEEEEecc---CCHHHHHHHHhCCcCE
Confidence 48999999999999999999998852 22221 1 1356777776556666665542 2567788899999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++ .+.+.++ .+.++ ..+.++.+++ .|+.+.-+++.+..-+++.+.+.++.+.+.+++.+.+.
T Consensus 86 i~i~~~~s~~~~~~~~~---~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 86 VHISIPVSDIHLAHKLG---KDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 888777777 5555665 34444 4477788888 57878877777777789999999999999999998773
No 165
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.17 E-value=0.032 Score=53.96 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+.+. ... ....+.++.+.+......+-.. ...+.+.++...++|++.
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~----~~~~~~~~~l~~~~~~~~v~~~---~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP---AAS----PQSRADCEAIAKLGLKAKILTH---IRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC---CCC----HHHHHHHHHHHhCCCCCcEEEE---ecCCHHHHHHHHHcCcCE
Confidence 489999999999999999999998862 221 2234555555443222333222 123677899999999999
Q ss_pred ccccccchHH-HHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEE-LQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~-l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++. ....++ .+.++ ..++++.+++ .|+.+..+++-.++=+++++.+.++.+.+++++.+.+.
T Consensus 88 i~i~~~~S~~~~~~~~~---~~~~e~~~~~~~~i~~a~~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 88 VDLVFGTSPFLREASHG---KSITEIIESAVEVIEFVKS---KGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred EEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 8887777773 333333 34555 5555678877 57999999999998889999999999999999988773
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.02 E-value=0.032 Score=56.37 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=105.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+..-.. ++ .-.+.++.|.+..+...|..+.. .+.+.++...++|++.
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~---~~----~~~e~i~~i~~~~~~~~v~~~~r---~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIA---SE----GEFEAIKKISQEGLNAEICSLAR---ALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC---Ch----HHHHHHHHHHhcCCCcEEEEEcc---cCHHHHHHHHHcCcCE
Confidence 48999999999999999999998754211 11 12467777776655666665553 3678899999999999
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+-+++ .+...++ ++....+...+.++.|++ .|+.+.-+++-..--+.+.+.+.++.+.+.+++.|.+.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888777777 4444554 112235666678888888 57888877776666778999999999999999998774
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.89 E-value=0.052 Score=52.18 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=98.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-----~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.++.++....++.+.+.|+++|-+..... .+ .+. .. =.+.++.+++..+++.+.++...-.++.+.++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~--~~-~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAA--HT-DEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCC--CC-hHHHHHHHHHhccCCEEEEEecCCccCHHHHHHH
Confidence 48899999999999999999998872210 00 111 11 1346677766666777766532112256778999
Q ss_pred HHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEE
Q 017179 229 AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~ 308 (376)
.++|+|.+....-..+ .+...+.++.+++ .|+.+..+++-...-+++.+.+.++.+.+.+++.+.
T Consensus 95 ~~~g~~~iri~~~~s~------------~~~~~~~i~~ak~---~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 95 ADLGVDVVRVATHCTE------------ADVSEQHIGAARK---LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred HHcCCCEEEEEechhh------------HHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999998766432222 2356788999998 578888888777778999999999999999999987
Q ss_pred ee
Q 017179 309 FG 310 (376)
Q Consensus 309 ~~ 310 (376)
+.
T Consensus 160 l~ 161 (263)
T cd07943 160 VT 161 (263)
T ss_pred Ec
Confidence 73
No 168
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.85 E-value=0.036 Score=55.98 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=101.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++.+++++.+.+.|+++|-+.. +...+ .=.+.++.|.+..+...+..+. +.+.+.++...++|++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~---r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMGE----EERAVIRAIVALGLPARLMAWC---RARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHcCCCcEEEEEc---CCCHHHHHHHHcCCcCE
Confidence 48999999999999999999998742 22221 1235677777665666665554 22678899999999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+...+-+++ .+..+++ .+.++.+ +.++.|++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.+++.+.+
T Consensus 89 i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARD---RGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred EEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 888877777 4555554 3455555 77788887 4777776666655566888899999999999999877
No 169
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.84 E-value=0.054 Score=54.28 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCC---CCCccc--HHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRD---DLADQG--SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~---dl~d~g--~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (376)
.++.++...+++++.+.|++.|-++-++.- .+ +.| ...=.+.++.+.+..++..+.+ +.|.+ ++.+.++...
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~-~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~a~ 98 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSF-NYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI-GTVDDLKMAY 98 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccc-cCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc-ccHHHHHHHH
Confidence 489999999999999999999999744310 00 000 0001356677766566777776 44543 3677889999
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|.+....- ....+...+.++.+|+ .|+.+...+|....-+++++.+.++.+.+.+++.|.+
T Consensus 99 ~~gvd~iri~~~------------~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 99 DAGVRVVRVATH------------CTEADVSEQHIGLARE---LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HcCCCEEEEEEe------------cchHHHHHHHHHHHHH---CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 999998755321 1223567888999999 5788988898888889999999999999999999877
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
.
T Consensus 164 ~ 164 (337)
T PRK08195 164 V 164 (337)
T ss_pred C
Confidence 3
No 170
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.83 E-value=0.042 Score=53.18 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=98.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH--HHHHHHHHhhC-CCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF--AQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~--~elvr~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
.++.++..++++.+.+.|+++|=+.-.....-...|...| .+.+++|.+.. ++..+.++.-....+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999999876221110000000000 23444444332 35677665533323567788888888
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++.+.... +....++.++.++.+++ .|+.+..+++-.++-+++.+.+.++.+.+.+++.+.+.
T Consensus 96 v~~iri~~------------~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 96 VDMIRVAF------------HKHEFDEALPLIKAIKE---KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred cCEEEEec------------ccccHHHHHHHHHHHHH---CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 88765532 23468888999999998 47889999999999999999999999999999998874
No 171
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.81 E-value=0.047 Score=55.51 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..++++.+.+.|+++|-+.. +...+ .-.+.++.|.+......+-++.. ...+.++...++|++.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~----~~~e~i~~i~~~~~~~~i~~~~r---~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF---PAVSE----DEKEAIKAIAKLGLNASILALNR---AVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC---CCcCh----HHHHHHHHHHhcCCCeEEEEEcc---cCHHHHHHHHhCCcCE
Confidence 48999999999999999999998642 22222 12456777766443444444432 1467789999999999
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHH----HHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~----vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+...+.+++ .+..+++ .+.++.++ .++.|++ .|+.+..+.+-+.--+.+.+.+.++.+.+.+++.|.+.
T Consensus 92 i~i~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 92 VHIFIATSDIHIKHKLK---KTREEVLERMVEAVEYAKD---HGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 888888877 4555554 45666655 7777777 47777777777777789999999999999999998774
No 172
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.75 E-value=0.07 Score=53.44 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeC-----CC--CCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDR-----DD--LADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVRE 227 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r-----~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~ 227 (376)
.++.++...+++++.+.|++.|-++-++. -+ .+- ... .+.++++.+..++..+.+ +.|.. ++.+.++.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~--~~~-~e~i~~~~~~~~~~~~~~ll~pg~-~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA--HTD-LEYIEAAADVVKRAKVAVLLLPGI-GTVHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC--CCh-HHHHHHHHHhCCCCEEEEEeccCc-cCHHHHHH
Confidence 48899999999999999999999984321 00 110 111 244555555555677764 44543 36788999
Q ss_pred HHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
..++|+|.+..... ....+...+.++.+|+ .|+.+...+|..+.-+++++.+.++.+.+.+++.|
T Consensus 96 a~~~gvd~iri~~~------------~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATH------------CTEADVSEQHIGMARE---LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEec------------cchHHHHHHHHHHHHH---cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 99999998765421 1223567788999998 57888888988888899999999999999999998
Q ss_pred Eee
Q 017179 308 TFG 310 (376)
Q Consensus 308 ~~~ 310 (376)
.+.
T Consensus 161 ~i~ 163 (333)
T TIGR03217 161 YIV 163 (333)
T ss_pred EEc
Confidence 774
No 173
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.16 E-value=0.051 Score=51.04 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC-CCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP-DFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p-d~~g~~e~l~~L~~aGld 234 (376)
.++.++..+.++.+.+.|+++|-+... ...+ . -.+.++.+.+..+...+..+.. ........++.++++|++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP---FASE---D-DFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC---TSSH---H-HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc---ccCH---H-HHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCC
Confidence 378899999999999999999987611 1111 1 1234444444444455554433 111013335556679999
Q ss_pred cccccccchHHHHHhhcCCCCCHH----HHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 235 VFAHNIETVEELQSAVRDHRANFK----QSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e----~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+...+..++...+... +.+.+ ...+.++.+++ .|+.+.-+++-...-+++++.+.++.+.+++++.|.+.
T Consensus 83 ~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNL--NKSREEALERIEEAVKYAKE---LGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEEEEEETSHHHHHHHT--CSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred EEEecCcccHHHHHHhh--cCCHHHHHHHHHHHHHHHHh---cCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 99888777773333322 34544 44566677777 47778777766667789999999999999999999884
No 174
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.12 E-value=0.13 Score=54.10 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=97.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++-+++++.+.+.|+++|-+.+--. + ... .+.++.|.+......|..+..- ..+.++...++|++.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~---~---~~d-~e~v~~i~~~~~~~~i~a~~r~---~~~di~~a~~~g~~~ 89 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAIT---S---EGE-REAIKAVTDEGLNAEICSFARA---VKVDIDAALECDVDS 89 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcC---C---HHH-HHHHHHHHhcCCCcEEEeeccc---CHHHHHHHHhCCcCE
Confidence 58999999999999999999998754321 1 111 3456677655445666665543 356688899999999
Q ss_pred ccccccchHH-HHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 236 FAHNIETVEE-LQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 236 i~h~lEtv~~-l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+...+-+++. +..+++ .+.++.+ +.++.|++ .|+.+.-+++-+.--+.+.+.+.++.+.+.+.+.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLK---KTREEVLETAVEAVEYAKD---HGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred EEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8887777773 333433 3555544 55566766 4677777777665555677779999999999999877
No 175
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.10 E-value=0.22 Score=48.58 Aligned_cols=140 Identities=16% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCCchhHHHHHHHH-HHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC------CCcEEEEecCCCCCChHHHHHH
Q 017179 156 PPDPDEPTNVAEAI-ASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK------PNMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al-~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~------p~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.++.++-+++++.+ .+.|+++|=+++-- .. .+.+ +.++++.+.. +++.+-++.+ +...++..
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~---~s---~~e~-~av~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~A 83 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASAR---VS---EGEF-EAVQKIIDWAAEEGLLDRIEVLGFVD----GDKSVDWI 83 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCC---CC---HHHH-HHHHHHHHHhhhhccccCcEEEEecC----cHHHHHHH
Confidence 48999999999996 77899999887631 11 1112 4555554321 2345544554 44568889
Q ss_pred HHcCcccccccccchH-HHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC----CCHHHHHHHHHHHHHc
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG----ETPDQVVSTMEKVRAA 302 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG----ET~ee~~e~L~~Lrel 302 (376)
+++|++.+...+-+++ ....+++. +....++..++++.+++ .|+.+..+++- +| -+.+.+.+.++.+.+.
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~---~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK---NGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDL 159 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh---CCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHc
Confidence 9999999888887777 55555541 12233444566777777 47888877775 55 3688889999999999
Q ss_pred CCcEEEee
Q 017179 303 GVDVMTFG 310 (376)
Q Consensus 303 ~vd~v~~~ 310 (376)
|++.|.+.
T Consensus 160 G~~~i~l~ 167 (280)
T cd07945 160 PIKRIMLP 167 (280)
T ss_pred CCCEEEec
Confidence 99998874
No 176
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.036 Score=51.96 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred EEEEeeeCCccCCCCcCCCCCCCCCC------CCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHH
Q 017179 129 TATIMILGDTCTRGCRFCNVKTSRAP------PPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKL 202 (376)
Q Consensus 129 tat~m~i~d~C~~~C~FC~v~~~r~~------~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~I 202 (376)
-+-|+-+ .||+.+|.||.-+.+-.+ ..++.+||++.++.+. .+.+.|+||||+. -+. ..+.++++.+
T Consensus 23 ~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP-~~~----~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEP-LLQ----PNLLELLELL 95 (212)
T ss_pred eeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcC-CCc----ccHHHHHHHH
Confidence 4555554 599999999986643211 2355666655554321 2456999999986 222 1256677777
Q ss_pred Hhh
Q 017179 203 KEL 205 (376)
Q Consensus 203 k~~ 205 (376)
++.
T Consensus 96 ~~~ 98 (212)
T COG0602 96 KRL 98 (212)
T ss_pred HhC
Confidence 654
No 177
>PRK00915 2-isopropylmalate synthase; Validated
Probab=95.71 E-value=0.22 Score=52.73 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=94.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHH----HHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR----EVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~----~L~~a 231 (376)
.++.++-+++++.+.+.|+++|-+...- .. ... .+.++.|.+..++..|.++..- ..+.++ .++++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~---~s---~~d-~~~v~~i~~~~~~~~i~a~~r~---~~~did~a~~a~~~~ 91 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA---SS---PGD-FEAVKRIARTVKNSTVCGLARA---VKKDIDAAAEALKPA 91 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC---CC---hHH-HHHHHHHHhhCCCCEEEEEccC---CHHHHHHHHHHhhcC
Confidence 4899999999999999999999875421 11 111 2345777665566777776631 233344 44478
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
|.+.+...+-+++ .+...++ .+.++.+ +.++.|++ .|+.+.-+.+-+.--+.+.+.+.++.+.+.+++.
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~ 165 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLK---MSREEVLEMAVEAVKYARS---YTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATT 165 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 8888888777777 5555554 4566655 67777777 4676665555444445677889999999999998
Q ss_pred EEe
Q 017179 307 MTF 309 (376)
Q Consensus 307 v~~ 309 (376)
+.+
T Consensus 166 i~l 168 (513)
T PRK00915 166 INI 168 (513)
T ss_pred EEE
Confidence 877
No 178
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.57 E-value=0.32 Score=46.23 Aligned_cols=158 Identities=8% Similarity=0.028 Sum_probs=98.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.|+..+.+.++.+.+.|++++++-=-|..-.|...+. ..+|+.|++..| +.+++.+-+ ..+.++.++++|+|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG--p~~i~~i~~~~~-~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG--AIAIKQFPTHCF-KDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHhCCCCC-EEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 5667888899999999999999865554333331111 345666654334 555655532 2457899999999999
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~ 316 (376)
....|... +..++|+.+|+ .|+.+++++.+.-+-..+++...+.. +|.|.+-. ..|+
T Consensus 96 t~H~Ea~~--------------~~~~~l~~Ik~---~g~~~kaGlalnP~Tp~~~i~~~l~~-----vD~VLiMt-V~PG 152 (228)
T PRK08091 96 TLQVEQTH--------------DLALTIEWLAK---QKTTVLIGLCLCPETPISLLEPYLDQ-----IDLIQILT-LDPR 152 (228)
T ss_pred EEcccCcc--------------cHHHHHHHHHH---CCCCceEEEEECCCCCHHHHHHHHhh-----cCEEEEEE-ECCC
Confidence 99888532 12356667777 46667999999998777777665553 55554421 1465
Q ss_pred CCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 317 KRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 317 ~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
..+-+..+. .-++..+++++-.+.|+.
T Consensus 153 fgGQ~f~~~-~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 153 TGTKAPSDL-ILDRVIQVENRLGNRRVE 179 (228)
T ss_pred CCCccccHH-HHHHHHHHHHHHHhcCCC
Confidence 444332211 124556666665555554
No 179
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.40 E-value=0.4 Score=46.57 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=93.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHhhCCCcEEEEecC-----CCC-----CChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVP-----DFR-----GNNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p-----d~~-----g~~e 223 (376)
.++.+|.++++..+.+.|++.|-+.++-..+ +...+.+. .+.++.+.+..|+..+.++.- .+. ..++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3789999999999999999999887643111 00001111 356677776666666654432 110 1466
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lre 301 (376)
.++...++|++.+....- ..+.+...+.++.+++ .|+.+..+++.-. .-+++.+.+.++.+.+
T Consensus 96 di~~~~~~g~~~iri~~~------------~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA------------LNDVRNLEVAIKAVKK---AGKHVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHcCCCEEEEeec------------CChHHHHHHHHHHHHH---CCCeEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 678888888887655322 2336777889999998 4777766665433 4567888899999999
Q ss_pred cCCcEEEee
Q 017179 302 AGVDVMTFG 310 (376)
Q Consensus 302 l~vd~v~~~ 310 (376)
.+++.|.+.
T Consensus 161 ~Ga~~i~l~ 169 (275)
T cd07937 161 MGADSICIK 169 (275)
T ss_pred cCCCEEEEc
Confidence 999998884
No 180
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.31 E-value=0.92 Score=43.98 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEe----cCCCC-CChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEAL----VPDFR-GNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l----~pd~~-g~~e~l~~L~ 229 (376)
.++.++..+.++++.+.|+++|-+.+.--. + .-.+.++.+.+.. ++..+-.+ .+++. .++..++.+.
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--P-----KDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--H-----HHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHH
Confidence 489999999999999999999998653110 1 1133455554432 23333322 12221 1345688899
Q ss_pred HcCcccccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHHHcCC
Q 017179 230 KSGLNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 230 ~aGld~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lrel~v 304 (376)
++|++.+...+-+++ .+...++ ++....+...+.++.+++ .|+.+..+.| -|.--+.+.+.+.++.+.+.++
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS---HGREVIFDAEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH---cCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 999998877666666 3444443 112345555667778887 4676666544 2333467777899999999999
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
+.+.+.
T Consensus 166 ~~i~l~ 171 (273)
T cd07941 166 DWLVLC 171 (273)
T ss_pred CEEEEe
Confidence 988773
No 181
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.08 E-value=0.7 Score=49.88 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=93.5
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC--cccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~--d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (376)
.++.++.+.++.++.+.|+..|-+.||..-|.. -. .+.-.+.++.+++..|++.+.++. ++..| ..+
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 378899999999999999999999887532210 00 012346678888888888888773 33333 245
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~Lre 301 (376)
.++...++|+|++....-..+ .+.....++.+++ .|..+...+-+-++ -|.+.+++.++.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~ 165 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALND------------VRNMEVAIKAAKK---AGAHVQGTISYTTSPVHTIEKYVELAKELEE 165 (592)
T ss_pred HHHHHHHCCCCEEEEEEecCh------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577888999998776433322 1334455677777 46666655533332 367888888888888
Q ss_pred cCCcEEEee
Q 017179 302 AGVDVMTFG 310 (376)
Q Consensus 302 l~vd~v~~~ 310 (376)
.|+|.|.|-
T Consensus 166 ~Gad~I~i~ 174 (592)
T PRK09282 166 MGCDSICIK 174 (592)
T ss_pred cCCCEEEEC
Confidence 888888773
No 182
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=94.93 E-value=0.78 Score=43.37 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=94.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..++++....|.++|-|- .| .++|+.+++. .++.|++..= +++.+-.-.++|+|.+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIA-------ad------p~LV~~~~~~-s~lPICVSaV----ep~~f~~aV~AGAdli 85 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIA-------AD------PELVKLAKSL-SNLPICVSAV----EPELFVAAVKAGADLI 85 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEec-------CC------HHHHHHHHHh-CCCCeEeecC----CHHHHHHHHHhCCCEE
Confidence 688899999999999999998543 12 3566666654 3566765442 4566777788999987
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.++ -.|.+|..= |..+.++.|++-++.|++.|+ +..+- -|=+.-..++-+++..+|.++|+|++--
T Consensus 86 EIG--NfDsFY~qG--r~f~a~eVL~Lt~~tR~LLP~-~~LsV--TVPHiL~ld~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 86 EIG--NFDSFYAQG--RRFSAEEVLALTRETRSLLPD-ITLSV--TVPHILPLDQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred Eec--chHHHHhcC--CeecHHHHHHHHHHHHHhCCC-CceEE--ecCccccHHHHHHHHHHHHHhCCcEEEc
Confidence 554 346777763 578999999999999999987 54333 3344457788889999999999998743
No 183
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.81 E-value=1.2 Score=46.49 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=91.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG-------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g-------- 220 (376)
.++.++.+.+++++.+.|+..|-++||..-| +.+. =.+.++.|++..|++.+..+. +++.|
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~----p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddv 97 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED----PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDV 97 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC----HHHHHHHHHHhCCCCEEEEEeccccccccccCchhh
Confidence 4789999999999999999999998885332 1111 246778888777888877433 22222
Q ss_pred ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~ 298 (376)
..+.++...++|+|++....-..+ + +...+.++.+++ .|+.+...|-.-++ -+.+-+.+..+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd-~-----------~n~~~~v~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~a~~ 162 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALND-V-----------RNLETAVKATKK---AGGHAQVAISYTTSPVHTIDYFVKLAKE 162 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCc-H-----------HHHHHHHHHHHH---cCCeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 245678888999998877543333 1 123446778887 46555444333333 256778888888
Q ss_pred HHHcCCcEEEee
Q 017179 299 VRAAGVDVMTFG 310 (376)
Q Consensus 299 Lrel~vd~v~~~ 310 (376)
+.+.|+|.|.|.
T Consensus 163 l~~~Gad~I~i~ 174 (448)
T PRK12331 163 MQEMGADSICIK 174 (448)
T ss_pred HHHcCCCEEEEc
Confidence 999999888773
No 184
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.66 E-value=0.44 Score=49.11 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC---CcEEEEecCCCCCChHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP---NMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p---~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
+++.++-++++++|.++|+++|-.....-. .+ -.+.++.|....+ ...+.++.++ ....++.+.++|
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s---~~----~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~ea~~~a~ 89 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVAS---PG----DFEFVRAIAEKAGLFICALIAALARA---IKRDIEALLEAG 89 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCC---hh----hHHHHHHHHHhcCcccchhhhhhHHh---HHhhHHHHHhCC
Confidence 589999999999999999999987654321 11 1234444442222 2233333333 355789999999
Q ss_pred cccccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 LNVFAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 ld~i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.+.+...+-+++ -+...++ .+....+...++++.|++ .|+.+.-+..-.+.-+.+.+.+.++.+.+.|++.|.+
T Consensus 90 ~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~---~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 90 VDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD---HGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 999888888887 4433332 122334445556677777 4677777777777888899999999999999999988
No 185
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.63 E-value=1.1 Score=48.26 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=92.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCC--CcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDL--ADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl--~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g--------~~e 223 (376)
.++.++.+.+++++.+.|+..|-+.||..-|. .-.+. .=.+.++.|++..|++.+..|. +...| ..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e-~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNE-DPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCC-CHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 47899999999999999999999988754331 10011 1246788888877888888873 33322 244
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lre 301 (376)
.++...++|+|++....-..+ .+.....++.+++ .|+.+...+-.-+ --|.+.+.+.++.+.+
T Consensus 96 ~v~~a~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFDALND------------PRNLQAAIQAAKK---HGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHCCCCEEEEEEecCc------------HHHHHHHHHHHHH---cCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 577788999998766533222 1334456677777 4665555443222 1367888888888888
Q ss_pred cCCcEEEe
Q 017179 302 AGVDVMTF 309 (376)
Q Consensus 302 l~vd~v~~ 309 (376)
.|+|.+.|
T Consensus 161 ~Gad~I~i 168 (582)
T TIGR01108 161 MGVDSICI 168 (582)
T ss_pred cCCCEEEE
Confidence 88888776
No 186
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=94.48 E-value=1.1 Score=47.38 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=92.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH----Hc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA----KS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~----~a 231 (376)
+++.++-+++++.+.+.|+++|-+..-- .. ...+ +.++.|.+..+...+.++.+- ..+.++... .+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~---~s---~~d~-e~v~~i~~~~~~~~i~al~r~---~~~did~a~~al~~~ 88 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPV---SS---PGDF-EAVQRIARTVKNPRVCGLARC---VEKDIDAAAEALKPA 88 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC---CC---HHHH-HHHHHHHHhCCCCEEEEEcCC---CHHhHHHHHHhcccc
Confidence 4899999999999999999999764321 11 1222 445777655566777777652 234444444 44
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcE
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+.+.+...+-+++ .+..+++ .+.++.+ +.++.+++ .|..+.-+..-+.--+.+.+.+.++.+.+.+++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~---~s~~e~l~~~~~~v~~a~~---~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~ 162 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLK---MTRDEVLERAVGMVKYAKN---FTDDVEFSCEDAGRTEIPFLARIVEAAINAGATT 162 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6666777677777 4444443 4556655 56677777 3566666666555566788889999999999998
Q ss_pred EEe
Q 017179 307 MTF 309 (376)
Q Consensus 307 v~~ 309 (376)
+.+
T Consensus 163 i~l 165 (494)
T TIGR00973 163 INI 165 (494)
T ss_pred EEe
Confidence 887
No 187
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.18 E-value=1.1 Score=41.86 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=84.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++..+.++++.+.|++-+-||--. + .-.+.|+++++.+|++.|.+=+ -. +.+.++...++|.+.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t----~-----~a~~~i~~l~~~~~~~~vGAGT-Vl--~~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT----P-----VALDAIRLLRKEVPDALIGAGT-VL--NPEQLRQAVDAGAQFI 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC----c-----cHHHHHHHHHHHCCCCEEEEEe-CC--CHHHHHHHHHcCCCEE
Confidence 478999999999999999999888521 2 2467899999889987776532 11 6788999999999866
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ -++++.+++ .|+..-.++| |..|+...+ +.|.+++.+|
T Consensus 85 -------------vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vKlF 128 (204)
T TIGR01182 85 -------------VS-PGLT----PELAKHAQD---HGIPIIPGVA-----TPSEIMLAL----ELGITALKLF 128 (204)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCcEECCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2332 278888888 4677777764 888887654 6799988887
No 188
>PRK14057 epimerase; Provisional
Probab=94.18 E-value=1.1 Score=43.46 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==-|..-.|. .| .++|+.|++..| +.+++.+-+ ....++.+.++|+|
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG----p~~i~~i~~~~p-~DvHLMV~~---P~~~i~~~~~aGad 100 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG----PWAVGQLPQTFI-KDVHLMVAD---QWTAAQACVKAGAH 100 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC----HHHHHHhccCCC-eeEEeeeCC---HHHHHHHHHHhCCC
Confidence 566788899999999999999986555433332 13 346666765444 455555432 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCce-------EEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL-------TKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~-------tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
.+....|+.+. ..++|+.+|+ .|++ +++++-+.-+-..+.+...+. .+|.|
T Consensus 101 ~It~H~Ea~~~--------------~~~~l~~Ir~---~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-----~vD~V 158 (254)
T PRK14057 101 CITLQAEGDIH--------------LHHTLSWLGQ---QTVPVIGGEMPVIRGISLCPATPLDVIIPILS-----DVEVI 158 (254)
T ss_pred EEEEeeccccC--------------HHHHHHHHHH---cCCCcccccccceeEEEECCCCCHHHHHHHHH-----hCCEE
Confidence 99998885321 1345555555 2432 578888888766666665554 35655
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
.+- -..|+..+-+..+. .-++..+++++-.+.|+
T Consensus 159 LvM-tV~PGfgGQ~Fi~~-~l~KI~~lr~~~~~~~~ 192 (254)
T PRK14057 159 QLL-AVNPGYGSKMRSSD-LHERVAQLLCLLGDKRE 192 (254)
T ss_pred EEE-EECCCCCchhccHH-HHHHHHHHHHHHHhcCC
Confidence 442 02565444332221 12345555555445554
No 189
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.99 E-value=2.2 Score=44.79 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCCC-------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRGN------- 221 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g~------- 221 (376)
.++.++.+.+++++.+.|+..|=+.||..-| +.. .=.+.++.|++..|++.+.++. +...|-
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e----~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNE----NPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCC----CHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 4789999999999999999999997764322 111 1246788888777888887632 232221
Q ss_pred -hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHH
Q 017179 222 -NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEK 298 (376)
Q Consensus 222 -~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~ 298 (376)
...++...++|+|++....-.++ .+.....++.+++ .|..+...+-.-++ -|.+.+++..+.
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~---~G~~v~~~i~~t~~p~~t~e~~~~~a~~ 161 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK---HGAHVQGAISYTVSPVHTLEYYLEFARE 161 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH---CCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 22367778899998877544433 1233455677777 35655555443333 467888888888
Q ss_pred HHHcCCcEEEee
Q 017179 299 VRAAGVDVMTFG 310 (376)
Q Consensus 299 Lrel~vd~v~~~ 310 (376)
+.+.|+|.|.|.
T Consensus 162 l~~~Gad~I~i~ 173 (467)
T PRK14041 162 LVDMGVDSICIK 173 (467)
T ss_pred HHHcCCCEEEEC
Confidence 888888888773
No 190
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=93.90 E-value=1.4 Score=41.84 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|++++++.--+.. . |...-.++|++|.+.. .+.+.+ -+..+ +.|.++.+.++|++.+..+
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~~--~--g~~~n~~~i~~i~~~~-~~pv~v-gGGir-s~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDAA--F--GRGSNRELLAEVVGKL-DVKVEL-SGGIR-DDESLEAALATGCARVNIG 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccc--C--CCCccHHHHHHHHHHc-CCCEEE-cCCCC-CHHHHHHHHHCCCCEEEEC
Confidence 37888999999999999999855432 1 1222348888887754 343432 12222 7899999999999987766
Q ss_pred ccch--HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 240 IETV--EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 240 lEtv--~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
-+.. +++...+- +...+..-.++.++-+. +.|.-++..+..+.++.+.+.+++.+.+..--
T Consensus 105 s~~l~~p~l~~~i~-------------~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~-- 169 (241)
T PRK14024 105 TAALENPEWCARVI-------------AEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVT-- 169 (241)
T ss_pred chHhCCHHHHHHHH-------------HHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeec--
Confidence 4432 23333332 22222100012222111 22444566678888899999999988875211
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
..++- .. | .++.++++.....+..+++|
T Consensus 170 -~~g~~-~G---~-d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 170 -KDGTL-TG---P-NLELLREVCARTDAPVVASG 197 (241)
T ss_pred -CCCCc-cC---C-CHHHHHHHHhhCCCCEEEeC
Confidence 11111 11 2 35556666665556666666
No 191
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=93.68 E-value=2.5 Score=39.82 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+++.+.++.+.+.|+++++++..+++.. ..+ ...+++++|++.. .+.|.+ .+... +.+.++.+...|++.+-.
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~-~~~--~~~~~i~~i~~~~-~~pv~~-~GGI~-s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE-GRE--TMLDVVERVAEEV-FIPLTV-GGGIR-SLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc-cCc--ccHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCceEEE
Confidence 45788889999999999999998876422 122 2457888888764 233332 22222 677888888888887655
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE------------ecCCCHHHHHHHHHHHHHcCCcE
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML------------GCGETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv------------GlGET~ee~~e~L~~Lrel~vd~ 306 (376)
+-.. + . +.+...++.+...+ ..+.+..++.. |.-++..+..+.++.+.+.+++.
T Consensus 100 g~~~----~---~----~p~~~~~i~~~~~~---~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~ 165 (243)
T cd04731 100 NSAA----V---E----NPELIREIAKRFGS---QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGE 165 (243)
T ss_pred Cchh----h---h----ChHHHHHHHHHcCC---CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCE
Confidence 4221 1 1 12222222222221 12444444332 23456777888889999999999
Q ss_pred EEeec
Q 017179 307 MTFGQ 311 (376)
Q Consensus 307 v~~~q 311 (376)
+.+..
T Consensus 166 i~v~~ 170 (243)
T cd04731 166 ILLTS 170 (243)
T ss_pred EEEec
Confidence 88854
No 192
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.43 E-value=1.2 Score=41.31 Aligned_cols=112 Identities=21% Similarity=0.382 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-+=||--. ++ ..+.|+.+++.+|++.|.+=+ -. +.+.++...++|++.+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t----~~-----a~~~I~~l~~~~p~~~vGAGT-V~--~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT----PN-----ALEAIEALRKEFPDLLVGAGT-VL--TAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS----TT-----HHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC----cc-----HHHHHHHHHHHCCCCeeEEEe-cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999998888421 22 467889999889998887633 11 6889999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|.| ..+ -++++.+++. |+.+-.+.| |..|+.+.+ ++|.+++.+|
T Consensus 85 -------------vSP-~~~----~~v~~~~~~~---~i~~iPG~~-----TptEi~~A~----~~G~~~vK~F 128 (196)
T PF01081_consen 85 -------------VSP-GFD----PEVIEYAREY---GIPYIPGVM-----TPTEIMQAL----EAGADIVKLF 128 (196)
T ss_dssp -------------EES-S------HHHHHHHHHH---TSEEEEEES-----SHHHHHHHH----HTT-SEEEET
T ss_pred -------------ECC-CCC----HHHHHHHHHc---CCcccCCcC-----CHHHHHHHH----HCCCCEEEEe
Confidence 332 221 2677888884 688888885 999987765 6899999987
No 193
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=93.40 E-value=1.4 Score=46.77 Aligned_cols=140 Identities=17% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEec----CCCCC-ChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFRG-NNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~----pd~~g-~~e~l~~L 228 (376)
+++.++.+++++.+.+.|+++|-+... ..++ | .+.++.|.+.. .+..+..+. ++... ++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~--d------~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPK--D------TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh--H------HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 589999999999999999999988542 1111 1 23455555422 234554433 23311 35678889
Q ss_pred HHcCcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lr 300 (376)
.++|.+.+...+-+++ .+...++ .+.++.+ +.++.+++ .|+.+.-+.+ -|.-.+.+-+.+.++.+.
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ak~---~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALR---TTLEENLAMIRDSVAYLKA---HGREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcC---CCHHHHHHHHHHHHHHHHH---cCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 9999999888877777 3334443 3455555 55666776 3666554443 222234566778899999
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
+.+++.+.+
T Consensus 169 ~~Gad~i~l 177 (524)
T PRK12344 169 EAGADWVVL 177 (524)
T ss_pred hCCCCeEEE
Confidence 999998877
No 194
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.39 E-value=2.4 Score=44.80 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=85.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEecC--CCCC--------
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVP--DFRG-------- 220 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p--d~~g-------- 220 (376)
.++.++.+.+|+++.+.|+..|-+.||..-| +.+ + =.+.|+.+++..|++.+..|.- +..|
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E---d-pwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddv 98 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE---D-PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEV 98 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---C-HHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhH
Confidence 3789999999999999999999998875333 221 1 1467888888889998887763 1111
Q ss_pred ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE--EEecCCCHHHHHHHHHH
Q 017179 221 NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI--MLGCGETPDQVVSTMEK 298 (376)
Q Consensus 221 ~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i--mvGlGET~ee~~e~L~~ 298 (376)
....++...+.|.|++.+.....+ .+.....++.+++. |..+...| +++---|.+.+++..+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lnd------------v~nl~~ai~~vk~a---g~~~~~~i~yt~sp~~t~e~~~~~a~~ 163 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALND------------PRNLEHAMKAVKKV---GKHAQGTICYTVSPIHTVEGFVEQAKR 163 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCh------------HHHHHHHHHHHHHh---CCeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 144677778889998766422222 12233344445542 33332332 33444567777777777
Q ss_pred HHHcCCcEEEe
Q 017179 299 VRAAGVDVMTF 309 (376)
Q Consensus 299 Lrel~vd~v~~ 309 (376)
+.+.|++.|.|
T Consensus 164 l~~~Gad~I~I 174 (499)
T PRK12330 164 LLDMGADSICI 174 (499)
T ss_pred HHHcCCCEEEe
Confidence 77777777666
No 195
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.22 E-value=1.9 Score=46.52 Aligned_cols=138 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC--CCcccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC--------ChH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD--LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------NNG 223 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d--l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g--------~~e 223 (376)
.++.++.+.+|+++.+.|+..+=+.||-.-| ++..+.+ =.+.|+.|++..|++.+..|.+. +.| ..+
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~-p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGED-PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 4789999999999999999999998774322 1111111 14678888888899998887752 111 133
Q ss_pred HHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE--ecCCCHHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML--GCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv--GlGET~ee~~e~L~~Lre 301 (376)
.++..+++|+|++.... .++ ..+.....++.+++ .|..+...+-+ .---|.+.+.+.++.+.+
T Consensus 102 ~v~~a~~~Gid~~rifd--------~ln----d~~~~~~ai~~ak~---~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD--------AMN----DPRNLETALKAVRK---VGAHAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHhcCCCEEEEee--------eCC----cHHHHHHHHHHHHH---cCCeEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 47778888999876642 111 13455567777877 35543333322 223466778888888888
Q ss_pred cCCcEEEe
Q 017179 302 AGVDVMTF 309 (376)
Q Consensus 302 l~vd~v~~ 309 (376)
.|+|.+.|
T Consensus 167 ~Gad~i~i 174 (593)
T PRK14040 167 MGVDSLCI 174 (593)
T ss_pred cCCCEEEE
Confidence 88888877
No 196
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.98 E-value=3 Score=39.04 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++++.|+.+.+.|+++++++-.++.... .| .-.+++++|.+.. .+.+.+ -+... +.+.++.+.++|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~--~n~~~~~~i~~~~-~~pv~~-~ggi~-~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG-RE--PLFELISNLAEEC-FMPLTV-GGGIR-SLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CC--CCHHHHHHHHHhC-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 47888899999999999999987764221 12 2356777777654 233422 22322 5677888888898876554
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEeEEEec----------C---CCHHHHHHHHHHHHHcCCc
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTSIMLGC----------G---ETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G-i~tkt~imvGl----------G---ET~ee~~e~L~~Lrel~vd 305 (376)
-.+ + . + .+.++.+.+.++.. +.+..++-.|+ | ++..+..+.++.+.+.+++
T Consensus 104 ~~~----l---~----~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d 168 (232)
T TIGR03572 104 TAA----L---E----N----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAG 168 (232)
T ss_pred hhH----h---c----C----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 221 1 1 0 13333333433221 33344433321 1 2345567888899999999
Q ss_pred EEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 306 VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 306 ~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+.+.... + .++ ... + .++.++++........+++|
T Consensus 169 ~i~i~~i~-~--~g~-~~g---~-~~~~~~~i~~~~~ipvia~G 204 (232)
T TIGR03572 169 EILLNSID-R--DGT-MKG---Y-DLELIKTVSDAVSIPVIALG 204 (232)
T ss_pred EEEEeCCC-c--cCC-cCC---C-CHHHHHHHHhhCCCCEEEEC
Confidence 99886432 2 111 111 1 36667777766666777777
No 197
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.88 E-value=1.6 Score=40.63 Aligned_cols=157 Identities=16% Similarity=0.243 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.++..+.+.++++.+.|++.+++==.|..-.|..++ =.++|++|++.. . +.+++.+-+ ....++.++++|++
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~~~i~~i~~~~-~~~~DvHLMv~~---P~~~i~~~~~~g~~ 82 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GPDIIKAIRKIT-DLPLDVHLMVEN---PERYIEEFAEAGAD 82 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---HHHHHHHHTTS-SSEEEEEEESSS---GGGHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccC--CHHHHHHHhhcC-CCcEEEEeeecc---HHHHHHHHHhcCCC
Confidence 467788899999999999999997777554454222 246788887753 3 455555543 24679999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
.+...+|+.+. ..++++.+|+ .| .++++.+.-+-..+.+...+. .+|.|.+-- ..
T Consensus 83 ~i~~H~E~~~~--------------~~~~i~~ik~---~g--~k~GialnP~T~~~~~~~~l~-----~vD~VlvMs-V~ 137 (201)
T PF00834_consen 83 YITFHAEATED--------------PKETIKYIKE---AG--IKAGIALNPETPVEELEPYLD-----QVDMVLVMS-VE 137 (201)
T ss_dssp EEEEEGGGTTT--------------HHHHHHHHHH---TT--SEEEEEE-TTS-GGGGTTTGC-----CSSEEEEES-S-
T ss_pred EEEEcccchhC--------------HHHHHHHHHH---hC--CCEEEEEECCCCchHHHHHhh-----hcCEEEEEE-ec
Confidence 99888885332 2346667777 35 577888777654444433222 477776631 25
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
|+..+-+..+. .-++.++++++..+.|+.+
T Consensus 138 PG~~Gq~f~~~-~~~KI~~l~~~~~~~~~~~ 167 (201)
T PF00834_consen 138 PGFGGQKFIPE-VLEKIRELRKLIPENGLDF 167 (201)
T ss_dssp TTTSSB--HGG-HHHHHHHHHHHHHHHTCGS
T ss_pred CCCCcccccHH-HHHHHHHHHHHHHhcCCce
Confidence 75544433221 2356777777777766433
No 198
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.88 E-value=2.5 Score=39.48 Aligned_cols=113 Identities=21% Similarity=0.248 Sum_probs=83.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|=||--. ++ -.+.|+++++.+|++.|.+=+ -. +.+.++...++|.+.+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~t----p~-----a~~~I~~l~~~~~~~~vGAGT-Vl--~~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRT----PA-----ALDAIRAVAAEVEEAIVGAGT-IL--NAKQFEDAAKAGSRFI 80 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----cc-----HHHHHHHHHHHCCCCEEeeEe-Cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988888521 22 457888898888987776532 11 6788999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
|. +..+ -++++.+++ .|+..-.+.| |..|+...+ +.|.++|-+|+
T Consensus 81 -------------vS-P~~~----~~vi~~a~~---~~i~~iPG~~-----TptEi~~A~----~~Ga~~vK~FP 125 (201)
T PRK06015 81 -------------VS-PGTT----QELLAAAND---SDVPLLPGAA-----TPSEVMALR----EEGYTVLKFFP 125 (201)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEECC
Confidence 33 2222 367778887 4677777774 888887754 67999888873
No 199
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=92.73 E-value=7.6 Score=41.43 Aligned_cols=141 Identities=17% Similarity=0.229 Sum_probs=93.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEe-eeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEec----CCCC-CChHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITS-VDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALV----PDFR-GNNGCVREV 228 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTs-g~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~----pd~~-g~~e~l~~L 228 (376)
+++.+|-+++++.+.+.|+++|=+.- ... .. =.+.+++|.+.. .+..|..+. ++.. .++..++.+
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s-------~~-d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~ 90 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGAN-------PK-DVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQAL 90 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-------hH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHH
Confidence 58999999999999999999998741 111 11 123455555433 235665554 2321 135678999
Q ss_pred HHcCcccccccccchH-HHHHhhcCCCCCHHHHHHH----HHHHHHhCCCCceEEEeEE---EecCCCHHHHHHHHHHHH
Q 017179 229 AKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDV----LMMAKDYVPAGTLTKTSIM---LGCGETPDQVVSTMEKVR 300 (376)
Q Consensus 229 ~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~v----l~~ak~~~p~Gi~tkt~im---vGlGET~ee~~e~L~~Lr 300 (376)
.++|.+.+...+-+++ .+...++ .+.++.++. ++.|++ .|+.+.-+.+ -|.--+.+.+.+.++.+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~---~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~ 164 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQ---TTLEENLAMIYDTVAYLKR---QGDEVIYDAEHFFDGYKANPEYALATLATAQ 164 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeeeecccCCHHHHHHHHHHHH
Confidence 9999998888777877 4444444 456666655 667777 3555543333 444456788899999999
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
+.+.+.+.+.
T Consensus 165 ~aGad~i~i~ 174 (526)
T TIGR00977 165 QAGADWLVLC 174 (526)
T ss_pred hCCCCeEEEe
Confidence 9999998873
No 200
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.71 E-value=2.4 Score=39.53 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++.+.|+.+.+.|+++++++..+.- . .|.....++++.|.+.. .+.| .......+.+.++.+.++|++.+-.+
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~--~-~g~~~~~~~i~~i~~~~-~~pv--~~~GGI~~~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA--K-AGKPVNLELIEAIVKAV-DIPV--QVGGGIRSLETVEALLDAGVSRVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc--c-cCCcccHHHHHHHHHHC-CCCE--EEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 47788899999999999999976431 1 11223567888887753 2333 33444447888999999999877554
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe----EE--Eec-CCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS----IM--LGC-GETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~----im--vGl-GET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
-...+ . .+...++.+.. +..+.+.-+ .+ .|. ..+..+..+..+.+.+.+++.+.+..-
T Consensus 104 ~~~l~----~-------~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~ 168 (233)
T PRK00748 104 TAAVK----N-------PELVKEACKKF----PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDI 168 (233)
T ss_pred chHHh----C-------HHHHHHHHHHh----CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeee
Confidence 22211 0 11111222222 221222222 22 222 335566778888899999997666311
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+ .++. .. + .++.++++........+++|
T Consensus 169 -~~--~g~~-~G-~---d~~~i~~l~~~~~ipvia~G 197 (233)
T PRK00748 169 -SR--DGTL-SG-P---NVEATRELAAAVPIPVIASG 197 (233)
T ss_pred -cC--cCCc-CC-C---CHHHHHHHHHhCCCCEEEeC
Confidence 11 1111 11 1 24555555555556666666
No 201
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.42 E-value=2.6 Score=44.70 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC---------cEEEEecCCCCCChHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---------MLIEALVPDFRGNNGCVR 226 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~---------i~Ie~l~pd~~g~~e~l~ 226 (376)
.++.+|-+++++.+.+.|+++|-+.. +... ..-.+.+++|.+..+. ..+..+..- ..+.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~---~~~dId 171 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC---KKRDIE 171 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeeccc---CHhhHH
Confidence 48999999999999999999998754 2211 1224456666543211 222222221 233445
Q ss_pred HHHHc----CcccccccccchH-HHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeEEEec---CCCHHH-HH
Q 017179 227 EVAKS----GLNVFAHNIETVE-ELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQ-VV 293 (376)
Q Consensus 227 ~L~~a----Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~imvGl---GET~ee-~~ 293 (376)
...++ |.+.+...+-+++ .+..+++ .+.++. .+.++.|++ .|+. .+.+|. +.++.| +.
T Consensus 172 ~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~---~s~ee~l~~~~~~V~~Ak~---~G~~---~v~f~~EDa~Rtd~efl~ 242 (503)
T PLN03228 172 AAWEALKYAKRPRILAFTSTSDIHMKYKLK---KTKEEVIEMAVSSIRYAKS---LGFH---DIQFGCEDGGRSDKEFLC 242 (503)
T ss_pred HHHHhhcccCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCc---eEEeccccccccCHHHHH
Confidence 44444 6666776666777 4344443 345544 556667777 3543 244555 556655 47
Q ss_pred HHHHHHHHcCCcEEEee
Q 017179 294 STMEKVRAAGVDVMTFG 310 (376)
Q Consensus 294 e~L~~Lrel~vd~v~~~ 310 (376)
+.++.+.+.+++.|.+.
T Consensus 243 ~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 243 KILGEAIKAGATSVGIA 259 (503)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 88889999999998773
No 202
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.24 E-value=4 Score=38.35 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.++.++++.+.|++-|=||- +. + .-.+.|+.+++.+|++.|.+=+ .. +.+.++...++|.+.+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--~-----~~~~~I~~l~~~~p~~~IGAGT--Vl-~~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--P-----AALEAIRLIAKEVPEALIGAGT--VL-NPEQLAQAIEAGAQFI 91 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--c-----cHHHHHHHHHHHCCCCEEEEee--cc-CHHHHHHHHHcCCCEE
Confidence 5789999999999999999998882 21 1 1357889999889987765422 11 5788999999999865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+. +..+. ++++.+++ .|+..-.+. -|..|+.+ ..++|.+++-+|
T Consensus 92 -------------vs-P~~~~----~vi~~a~~---~~i~~iPG~-----~TptEi~~----a~~~Ga~~vKlF 135 (212)
T PRK05718 92 -------------VS-PGLTP----PLLKAAQE---GPIPLIPGV-----STPSELML----GMELGLRTFKFF 135 (212)
T ss_pred -------------EC-CCCCH----HHHHHHHH---cCCCEeCCC-----CCHHHHHH----HHHCCCCEEEEc
Confidence 22 23222 66777777 345555455 37777443 556788888775
No 203
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.18 E-value=1.4 Score=43.00 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=79.7
Q ss_pred CCchhHHHHHHHHHHCC-----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh--CCCcEEEEecCCCCCChHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWG-----LDYVVITSVDRDDLADQGSGHFAQTVRKLKEL--KPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G-----~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~--~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
.+.++=++.++.+.+.| +++|-+++-. ...+.++.+.+... .|.+..- +.| +.+.++...
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~--------~~d~~~v~~~~~~~~~~~~v~~~-~r~----~~~die~A~ 84 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYT--------EKDREAVEACLDRGYKFPEVTGW-IRA----NKEDLKLVK 84 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcC--------hHHHHHHHHHHHcCCCCCEEEEE-ecC----CHHHHHHHH
Confidence 48888899999999999 9999875421 12233333333221 2332221 333 677889999
Q ss_pred HcCcccccccccchH-HHHHhhcCCCCCHHHHH----HHHHHHHHhCCCCceEEEeEEEecCCCHHH--------HHHHH
Q 017179 230 KSGLNVFAHNIETVE-ELQSAVRDHRANFKQSL----DVLMMAKDYVPAGTLTKTSIMLGCGETPDQ--------VVSTM 296 (376)
Q Consensus 230 ~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L----~vl~~ak~~~p~Gi~tkt~imvGlGET~ee--------~~e~L 296 (376)
++|++.+...+-+++ -.+..++ .+.++.+ ++++.|++ .|+.+..++ -|.+..+ +.+.+
T Consensus 85 ~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~---~g~~v~~~~---ed~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 85 EMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALD---HGIKPRCHL---EDITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHH---CCCeEEEEE---EcccCCCcccchHHHHHHHH
Confidence 999999988887777 4445554 3455555 45566666 466555444 1444442 22333
Q ss_pred HHHHHcCCc-EEEee
Q 017179 297 EKVRAAGVD-VMTFG 310 (376)
Q Consensus 297 ~~Lrel~vd-~v~~~ 310 (376)
+...+.|++ .+.+.
T Consensus 156 ~~~~~~G~~~~i~l~ 170 (279)
T cd07947 156 KLSKESGIPVKIRLC 170 (279)
T ss_pred HHHHHCCCCEEEEec
Confidence 344458998 67763
No 204
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.10 E-value=5.8 Score=36.14 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=78.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++....++++.+.|++-|.++.-+. .-.+.++.+++.+|++.|.+-+- . +.+.++...++|.+.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v-~--~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTV-L--TPEQADAAIAAGAQFI 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeC-C--CHHHHHHHHHcCCCEE
Confidence 4688999999999999999999884211 13558899999888766654221 1 5788999999999876
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
.. +..+ .++++.+++. |+ .+|+|.- |.+|..+.+ +.|+|++.+++
T Consensus 81 ~~--------------p~~~----~~~~~~~~~~---~~----~~i~gv~-t~~e~~~A~----~~Gad~i~~~p 125 (190)
T cd00452 81 VS--------------PGLD----PEVVKAANRA---GI----PLLPGVA-TPTEIMQAL----ELGADIVKLFP 125 (190)
T ss_pred Ec--------------CCCC----HHHHHHHHHc---CC----cEECCcC-CHHHHHHHH----HCCCCEEEEcC
Confidence 32 1211 2466666662 33 3566776 888876664 58999998863
No 205
>PRK08005 epimerase; Validated
Probab=92.00 E-value=8.1 Score=36.31 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|+..+.+.++++.++|++.+++==-|..-.|...+. .++++.|++... .+.+++.+-+ ....++.+.++|+|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG--~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFG--MKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC--HHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 4566788889999999999999865554333331111 346777765421 1555554432 245689999999999
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~ 297 (376)
+....|+.+. ..++|+.+|+ .| .++++-+.-+-..+.+...+.
T Consensus 85 It~H~Ea~~~--------------~~~~l~~Ik~---~G--~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 85 IFIHAESVQN--------------PSEILADIRA---IG--AKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred EEEcccCccC--------------HHHHHHHHHH---cC--CcEEEEECCCCCHHHHHHHHH
Confidence 9988885321 2346666777 45 477888888766666655444
No 206
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=91.99 E-value=4.8 Score=38.46 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|+++++++--++..- +...-.+++++|.+.. ++.|.+ .+... +.+.++.+..+|++.+-.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~-~~pv~~-~GGi~-s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETV-FIPLTV-GGGIK-SIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhc-CCCEEE-ECCCC-CHHHHHHHHHcCCCEEEEC
Confidence 4678889999999999999997665421 1223467888887754 233432 22222 6788899999998877555
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeE-------------EE--ecCCCHHHHHHHHHHHHHcC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSI-------------ML--GCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p-~Gi~tkt~i-------------mv--GlGET~ee~~e~L~~Lrel~ 303 (376)
-++.+ ..+.++.+.+.++ .-+.+..++ .+ |.-++.++..+.++.+.+.+
T Consensus 104 t~~~~---------------~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G 168 (254)
T TIGR00735 104 TAAVK---------------NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG 168 (254)
T ss_pred hhHhh---------------ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC
Confidence 22211 0133333333333 113333332 11 12345678889999999999
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
++.+.+.
T Consensus 169 ~~~iivt 175 (254)
T TIGR00735 169 AGEILLT 175 (254)
T ss_pred CCEEEEe
Confidence 9988884
No 207
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.81 E-value=5 Score=38.22 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.. |++.+++==.|.--.|...+. .++|+.|++.. | +.+++.+-+ ....++.+.++|+|
T Consensus 12 ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg--~~~i~~ir~~t~~~-~DvHLMv~~---P~~~i~~~~~aGad 84 (229)
T PRK09722 12 MDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS--PFFVSQVKKLASKP-LDVHLMVTD---PQDYIDQLADAGAD 84 (229)
T ss_pred cCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC--HHHHHHHHhcCCCC-eEEEEEecC---HHHHHHHHHHcCCC
Confidence 455677778888877 999999866654333331111 34677777642 3 455555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCC
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
.+....|+.+ ....++|+.+|+ .| .++++-+.-+-..+.+...|.. +|.|.+-- ..
T Consensus 85 ~it~H~Ea~~-------------~~~~~~i~~Ik~---~G--~kaGlalnP~T~~~~l~~~l~~-----vD~VLvMs-V~ 140 (229)
T PRK09722 85 FITLHPETIN-------------GQAFRLIDEIRR---AG--MKVGLVLNPETPVESIKYYIHL-----LDKITVMT-VD 140 (229)
T ss_pred EEEECccCCc-------------chHHHHHHHHHH---cC--CCEEEEeCCCCCHHHHHHHHHh-----cCEEEEEE-Ec
Confidence 9998888532 112356677777 45 5788888887555555555543 45444410 14
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhh
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGF 343 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf 343 (376)
|+..+-+..+. .-++..+++++-.+.|+
T Consensus 141 PGf~GQ~fi~~-~l~KI~~lr~~~~~~~~ 168 (229)
T PRK09722 141 PGFAGQPFIPE-MLDKIAELKALRERNGL 168 (229)
T ss_pred CCCcchhccHH-HHHHHHHHHHHHHhcCC
Confidence 65444332211 12345555555445453
No 208
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.79 E-value=5 Score=38.06 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++..+.++++.+.|++-+=||--. + ...+.+.++.+.+++.+|++.|.+=+ -. +.+.++...++|++.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t----p-~a~~~i~~l~~~~~~~~p~~~vGaGT-Vl--~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG----D-FAHEVFAELVKYAAKELPGMILGVGS-IV--DAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----C-cHHHHHHHHHHHHHhhCCCeEEeeEe-Cc--CHHHHHHHHHcCCCEE
Confidence 478999999999999999988887421 1 12333444445556677887776533 11 6888999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. +..+ -++++.+++ .|+..-.+.| |..|+.+.+ +.|.++|-+|
T Consensus 96 -------------Vs-P~~~----~~v~~~~~~---~~i~~iPG~~-----TpsEi~~A~----~~Ga~~vKlF 139 (222)
T PRK07114 96 -------------VT-PLFN----PDIAKVCNR---RKVPYSPGCG-----SLSEIGYAE----ELGCEIVKLF 139 (222)
T ss_pred -------------EC-CCCC----HHHHHHHHH---cCCCEeCCCC-----CHHHHHHHH----HCCCCEEEEC
Confidence 33 2222 267777777 3576666664 888887665 5788888887
No 209
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=91.64 E-value=5.8 Score=37.58 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=76.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==.|..-.|...+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg--~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG--PMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC--HHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4566788889999999999999866554333331111 3467777764222 455555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~ 297 (376)
.+....|..+ +..++|+.+|+ .| .++++.+.-+-..+.+...+.
T Consensus 88 ~I~~H~Ea~~--------------~~~~~l~~Ir~---~g--~k~GlalnP~T~~~~i~~~l~ 131 (223)
T PRK08745 88 TISFHPEASR--------------HVHRTIQLIKS---HG--CQAGLVLNPATPVDILDWVLP 131 (223)
T ss_pred EEEEcccCcc--------------cHHHHHHHHHH---CC--CceeEEeCCCCCHHHHHHHHh
Confidence 9998888532 12356666777 35 578888888766666655544
No 210
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.30 E-value=2.1 Score=46.20 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEEEecC-----CCCC-----ChHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEALVP-----DFRG-----NNGC 224 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~p-----d~~g-----~~e~ 224 (376)
+..++++.++.++.+.|+..+-+.||..-|-.- .+-+ =.+.++.+++..|++.+..|+- .+.. -...
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~ed-pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKED-PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCC-HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 678999999999999999999999996432210 0001 1367888888889998887761 1111 1335
Q ss_pred HHHHHHcCcccccc
Q 017179 225 VREVAKSGLNVFAH 238 (376)
Q Consensus 225 l~~L~~aGld~i~h 238 (376)
++..++.|+|++-.
T Consensus 102 v~~a~~~Gidv~Ri 115 (596)
T PRK14042 102 VKLAVNNGVDVFRV 115 (596)
T ss_pred HHHHHHcCCCEEEE
Confidence 67778889888754
No 211
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.23 E-value=4.8 Score=38.88 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEec-C-CCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALV-P-DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMA 267 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~-p-d~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~a 267 (376)
.|.+.|.+.++..++..++..+-+.+ + +...-.+.++.+.++|+|.+..|+-+-... .-++-..+.+...++++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~--~~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVG--GGRQLGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC--CCcccccCHHHHHHHHHHH
Confidence 34556666665554432222222211 1 100013456666777788777765432200 0000123567777888888
Q ss_pred HHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 268 KDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
++.. .--+++.+ +.+.+|..+.++.+.+.++|.+.+..
T Consensus 158 r~~~------~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 158 KAAV------DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHcc------CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 8742 11233333 67888999999999999999998854
No 212
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.15 E-value=5.8 Score=37.27 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---CCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~---p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
.+.++.+..++++.+.|++-+=||-- -++ -.+.|++|++.+ |++.|.+=+ -+ +.+.++...++|.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~----~~~-----a~~~i~~l~~~~~~~p~~~vGaGT-V~--~~~~~~~a~~aGA 89 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT----NPF-----ASEVIKELVELYKDDPEVLIGAGT-VL--DAVTARLAILAGA 89 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC----Ccc-----HHHHHHHHHHHcCCCCCeEEeeee-CC--CHHHHHHHHHcCC
Confidence 47899999999999999998887742 122 357888888877 456666422 11 6788999999998
Q ss_pred ccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 234 d~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+ |. +..+ -++++.+++ .|+..-.+. .|..|+.+.+ +.|.|++.+|
T Consensus 90 ~Fi-------------vs-P~~~----~~v~~~~~~---~~i~~iPG~-----~T~~E~~~A~----~~Gad~vklF 136 (213)
T PRK06552 90 QFI-------------VS-PSFN----RETAKICNL---YQIPYLPGC-----MTVTEIVTAL----EAGSEIVKLF 136 (213)
T ss_pred CEE-------------EC-CCCC----HHHHHHHHH---cCCCEECCc-----CCHHHHHHHH----HcCCCEEEEC
Confidence 865 33 2322 267777777 356665555 4888887775 5899999885
No 213
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.85 E-value=8.7 Score=34.86 Aligned_cols=77 Identities=12% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++...+.++++.+.|+++|.|--.|...++. ...-.+.+++|++..+ .+.+.+..-+ ..+.++.+.++|+|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~--~~~~~~~v~~i~~~~~~~v~v~lm~~~---~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPN--LTFGPPVLEALRKYTDLPIDVHLMVEN---PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 567788999999999999999995333333322 2223567888876421 2224444433 356688888999997
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+..
T Consensus 83 v~v 85 (210)
T TIGR01163 83 ITV 85 (210)
T ss_pred EEE
Confidence 544
No 214
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=90.75 E-value=2.6 Score=41.42 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCC--CCCccc-HHHHHHHHHHHHhhCCC-cEEEE-ecCCCCCC----hHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD--DLADQG-SGHFAQTVRKLKELKPN-MLIEA-LVPDFRGN----NGCVRE 227 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~--dl~d~g-~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~g~----~e~l~~ 227 (376)
.+..++...++.+.+.|++.|++..||.+ |.+ ++ ..+-.++|+.||....+ ..|.+ +.|+.... ...+..
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~-~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~ 167 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKP-GGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKR 167 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCC-CccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHH
Confidence 46789999999999999999999999975 333 22 34567888888876655 55553 56655321 223333
Q ss_pred HH---HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 228 VA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 228 L~---~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
|+ ++|+|.+ .-.+ -++.+.+.+..+.+++
T Consensus 168 lkrKv~aGAd~~----------iTQ~---~fd~e~~~~~~~~~~~ 199 (291)
T COG0685 168 LKRKVDAGADFF----------ITQF---FFDVEAFERFAERVRA 199 (291)
T ss_pred HHHHHhcchHHH----------HHHH---ccCHHHHHHHHHHHHh
Confidence 33 4555432 2221 2456666666777766
No 215
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.72 E-value=7.3 Score=37.03 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..++.+.++.+.+.|+++++++.-+++.- . ...-.+++++|++.. .+.|.+ .+... +.+.++.+.++|++.+-.
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~-~--~~~~~~~i~~i~~~~-~ipv~~-~GGi~-s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSE-G--RDTMLDVVERVAEQV-FIPLTV-GGGIR-SVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccc-c--CcchHHHHHHHHHhC-CCCEEe-eCCCC-CHHHHHHHHHcCCCEEEE
Confidence 34778888888899999999998776321 1 234567888887754 233332 22332 678888888899888765
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCC-CCceEEEeEE-----------E--ecCCCHHHHHHHHHHHHHcCC
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP-AGTLTKTSIM-----------L--GCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p-~Gi~tkt~im-----------v--GlGET~ee~~e~L~~Lrel~v 304 (376)
+-+.. . + .+.++.+.+.++ ..+.+..++. + |.-.+..+..+..+.+.+.++
T Consensus 103 gt~~l-------~----~----p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 103 NSAAV-------A----N----PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred ChhHh-------h----C----cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCC
Confidence 42211 1 0 123333333332 1122333321 1 111234456677777888999
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
+.+.+.
T Consensus 168 ~~ii~~ 173 (253)
T PRK02083 168 GEILLT 173 (253)
T ss_pred CEEEEc
Confidence 988774
No 216
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=90.70 E-value=3.6 Score=38.31 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=76.1
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..++.+.|+.+.+.|++++.+..-+.. +. |.....+++++|++.. .+.+ .......+.+.++.+.++|+|.+-.
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~--~~~~~~~~i~~i~~~~-~~pv--~~~GgI~~~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KG--GEPVNLELIEEIVKAV-GIPV--QVGGGIRSLEDIERLLDLGVSRVII 101 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-cc--CCCCCHHHHHHHHHhc-CCCE--EEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 467888999999999999999843321 11 1223466788887764 2333 2222222678899999999988754
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeE----EE--ec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSI----ML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~i----mv--Gl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-...+ + .+.++.+.+.++. -+.+..++ ++ |. ..+..+..+.++.+.+.+++.+.+.
T Consensus 102 gs~~l~-----------d----p~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 102 GTAAVK-----------N----PELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CchHHh-----------C----hHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 422111 0 1223333332221 12222221 11 11 3456677788888999999988875
No 217
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.61 E-value=8.3 Score=40.57 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCC-----CCcccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC--------C
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDD-----LADQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------N 221 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-----l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g--------~ 221 (376)
++.++++.+|+++.+.|+..+-+.||-.-| +.+. =.+.++.+++..|++.+..|.-. +.| .
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~ed----pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNED----PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCC----HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHH
Confidence 778999999999999999999999986433 2221 13678888888898888876532 112 1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKV 299 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~L 299 (376)
...++..++.|+|++-.. ..++ ..+.....++.+++ .|..+...|.+=. .-|.+-+.+..+.+
T Consensus 108 ~~fv~~a~~~Gidi~Rif--------d~ln----d~~n~~~ai~~ak~---~G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF--------DALN----DPRNIQQALRAVKK---TGKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred HHHHHHHHHCCCCEEEEc--------ccCC----CHHHHHHHHHHHHH---cCCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 223677778888876442 2222 23444455555555 2443332221111 23444466666666
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
.+.|++.|.|
T Consensus 173 ~~~Gad~I~I 182 (468)
T PRK12581 173 VEMGADSICI 182 (468)
T ss_pred HHcCCCEEEE
Confidence 6666666655
No 218
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.40 E-value=9.5 Score=36.77 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=51.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeee--CCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVD--RDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~--r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
..+++++.+.|++..+.|.+.|-| |+. +++.... ..+.+..+|+.+++.. ++.|.+ -.+ +.+.++.-.
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDI-G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsi--DT~--~~~vi~~al 92 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDV-GGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISV--DTY--RAEVARAAL 92 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE--eCC--CHHHHHHHH
Confidence 378899999999999999999998 432 3332211 1235777777777643 344432 122 567788777
Q ss_pred HcCcccccc
Q 017179 230 KSGLNVFAH 238 (376)
Q Consensus 230 ~aGld~i~h 238 (376)
++|.+.+++
T Consensus 93 ~~G~~iINs 101 (257)
T TIGR01496 93 EAGADIIND 101 (257)
T ss_pred HcCCCEEEE
Confidence 889998877
No 219
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=90.19 E-value=7.6 Score=41.06 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
.+++ .+.++++.+.|++.|+|+..+.. .....+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+-
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a--G~V~-t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA--GNVV-TADQAKNLIDAGADGLR 308 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE--CCcC-CHHHHHHHHHcCCCEEE
Confidence 3444 78899999999999999875322 2234689999999888765543 3332 67889999999999984
Q ss_pred cc-----ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 238 HN-----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 238 h~-----lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+ +.+...+. -+. ...+....++.+.+++ .|+++-+ +| -|..|+...+. +|.+.|-+|
T Consensus 309 vg~g~Gs~~~t~~~~-~~g--~p~~~ai~~~~~~~~~---~~v~vIadGGi-----~~~~di~kAla----~GA~~Vm~G 373 (495)
T PTZ00314 309 IGMGSGSICITQEVC-AVG--RPQASAVYHVARYARE---RGVPCIADGGI-----KNSGDICKALA----LGADCVMLG 373 (495)
T ss_pred ECCcCCcccccchhc-cCC--CChHHHHHHHHHHHhh---cCCeEEecCCC-----CCHHHHHHHHH----cCCCEEEEC
Confidence 33 22222111 111 1233444455555555 2444333 33 57788877664 788888887
Q ss_pred cCC
Q 017179 311 QYM 313 (376)
Q Consensus 311 qY~ 313 (376)
..+
T Consensus 374 ~~~ 376 (495)
T PTZ00314 374 SLL 376 (495)
T ss_pred chh
Confidence 665
No 220
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=90.01 E-value=3.5 Score=40.16 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=78.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-C-hHHHHHHHHcC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-N-NGCVREVAKSG 232 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~-~e~l~~L~~aG 232 (376)
+.+++|+.+.|.+..+.|..-|++=.=+.+| .+-...+.|.++++.|++..|++.|...++.-.+ + .+.+..+..-.
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999888775442211 1112368899999999999999999987764222 2 33333333324
Q ss_pred cccccccc----------------cchHHHHHhhcCCC-------CCHHHHHHHHHHHHHhCCCCc---eEEEeEEEec-
Q 017179 233 LNVFAHNI----------------ETVEELQSAVRDHR-------ANFKQSLDVLMMAKDYVPAGT---LTKTSIMLGC- 285 (376)
Q Consensus 233 ld~i~h~l----------------Etv~~l~~~vr~r~-------~t~e~~L~vl~~ak~~~p~Gi---~tkt~imvGl- 285 (376)
+|....+. +.+.++++.++.++ ++... ++.+..+.+ .|+ +.--.+++|.
T Consensus 102 pd~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~-l~~~~~l~~---~G~l~~p~~~~~vlG~~ 177 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGH-LRNARRLIE---KGLLPGPLLVNFVLGVP 177 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHH-HHHHHHHHH---TTSS-SSEEEEEEES-T
T ss_pred CCeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHH-HHHHHHHHH---CCCCCCCeEEEEcccCC
Confidence 55544431 23345555554222 22233 333333333 133 4556666666
Q ss_pred C---CCHHHHHHHHHHHHH
Q 017179 286 G---ETPDQVVSTMEKVRA 301 (376)
Q Consensus 286 G---ET~ee~~e~L~~Lre 301 (376)
| -|.+++...++.+.+
T Consensus 178 ~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 178 GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp TS--S-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCC
Confidence 4 556666666666665
No 221
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=89.88 E-value=12 Score=36.53 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+-+..+++++.+.+.--|+..+...-++. +|...|...++.+.+....+.|- +.-|+..+.+.+....++|.+++
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~vpv~-lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYM-GGYKMAVAMVKTLIERMSIVPVA-LHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-CcHHHHHHHHHHHHHHCCCCeEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 45677888888888888877776665433332 34677888998887766323332 34465556788888889998765
Q ss_pred cccccchHHHHHhhcCCCCCHHH----HHHHHHHHHHhCCCCceE--EEeEEEecCCCH---------HHHHHHHHHHHH
Q 017179 237 AHNIETVEELQSAVRDHRANFKQ----SLDVLMMAKDYVPAGTLT--KTSIMLGCGETP---------DQVVSTMEKVRA 301 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~----~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~---------ee~~e~L~~Lre 301 (376)
-+ +. ...++++ ..++.+.++.. |+.+ ..+. +| |+.+ .+..+..+++++
T Consensus 102 mi--d~----------s~l~~~eni~~t~~v~~~a~~~---gv~Ve~ElG~-~g-g~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 102 MI--DG----------SHLPFEENLALTKKVVEIAHAK---GVSVEAELGT-LG-GIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred EE--CC----------CCCCHHHHHHHHHHHHHHHHHc---CCEEEEeeCC-Cc-CccccccccccccCCHHHHHHHHHH
Confidence 32 21 1223333 33555555552 4432 2222 12 2211 256666778888
Q ss_pred cCCcEEEe--ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 302 AGVDVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 302 l~vd~v~~--~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.++|++.+ |+.. +..... ++-.++.|+++....+...|+=|
T Consensus 165 tgvD~Lavs~Gt~h-g~~~~~------~~l~~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 165 TGVDYLAAAIGTSH-GKYKGE------PGLDFERLKEIKELTNIPLVLHG 207 (282)
T ss_pred HCcCEEeeccCccc-cccCCC------CccCHHHHHHHHHHhCCCEEEEC
Confidence 89999884 4321 111111 11236667777666665555433
No 222
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=89.81 E-value=21 Score=35.16 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=90.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++.++..+.++.+.+.|++++-+++.... ++ ..+..+.+........+-.+.+. ..+.++...+.|++.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 85 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPAAS--KQ-----SRIDIEIIASLGLKANIVTHIRC---RLDDAKVAVELGVDG 85 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HH-----HHHHHHHHHhcCCCcEEEEECCC---CHHHHHHHHHCCcCE
Confidence 378889999999999999999998874211 11 12223333322211223334432 356677788888887
Q ss_pred ccccccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVE-ELQSAVR-DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+....-..+ .....+. ......+.....++.+++ .|+.+..+++-.+-...+++++..+.+.+.+++.+.+.
T Consensus 86 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~---~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 86 IDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKS---AGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 655433222 2233322 112223456677788887 46778888887777778999999999999999987663
No 223
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.56 E-value=2.6 Score=40.20 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=100.6
Q ss_pred HHHHHHHCCCcEEEEEeee---CCCCCccc---HHHHHHHHHHHHhhCCCcEEEEecCCCCCC----hHHHHHHHHcCcc
Q 017179 165 VAEAIASWGLDYVVITSVD---RDDLADQG---SGHFAQTVRKLKELKPNMLIEALVPDFRGN----NGCVREVAKSGLN 234 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~---r~dl~d~g---~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~----~e~l~~L~~aGld 234 (376)
.|+.+.+.|++-+.++|-. --.++|.+ .+.+...++.|.... .+.+-+=.+.-.|+ .+.++.+.++|++
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3566677799887776642 11445544 344445555554432 11111101110123 3446778888877
Q ss_pred cccccccchHHHHHhhcC-----CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-----cC-CCHHHHHHHHHHHHHcC
Q 017179 235 VFAHNIETVEELQSAVRD-----HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-----CG-ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~-----r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG-----lG-ET~ee~~e~L~~Lrel~ 303 (376)
.+.. | +..+++-+. .-.+.++..+.|+.+++.... + ...-|+.+ .| +..+|.++-.+...+.|
T Consensus 100 gv~i--E--D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~-~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 100 GIHI--E--DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD-L-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred EEEE--e--cCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcC
Confidence 6544 3 122222110 124788888888888886533 3 34445555 55 68999999999999999
Q ss_pred CcEEEeecCCCCC-------CCCCCCcccCChH----HHHHHHHHHHHHhhhhhccch-hHhhhhhhcH
Q 017179 304 VDVMTFGQYMRPS-------KRHMPVSEYITPE----AFERYRALGMEMGFRYVASGP-MVRSSYKAGE 360 (376)
Q Consensus 304 vd~v~~~qY~~P~-------~~~~~v~~~v~pe----~~~~l~~~a~~~gf~~~~sgp-~vrssy~a~~ 360 (376)
.|.+-+-....+. ....|+.=+..|. ..++|. ++||..+.-|+ +.|+.++|=+
T Consensus 174 AD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~----~lG~~~v~~~~~~~~~a~~a~~ 238 (243)
T cd00377 174 ADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELA----ELGVRRVSYGLALLRAAAKAMR 238 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH----HCCCeEEEEChHHHHHHHHHHH
Confidence 9988663111110 1123322222221 133333 45998887666 7788877743
No 224
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.56 E-value=11 Score=36.25 Aligned_cols=130 Identities=11% Similarity=0.128 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|++.|+.+.+.|+++++++=.++..-. ...-.+++++|.+.. .+.|.+- +... +.+.++.+.++|++.+-.|
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---~~~n~~~i~~i~~~~-~~pv~~g-GGi~-s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG---SEPNYELIENLASEC-FMPLCYG-GGIK-TLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC---CcccHHHHHHHHHhC-CCCEEEC-CCCC-CHHHHHHHHHCCCCEEEEC
Confidence 37888999999999999999976654211 122367788887653 3444322 2222 5677888888898877665
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec------------CCCHHHHHHHHHHHHHcCCcE
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC------------GETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvGl------------GET~ee~~e~L~~Lrel~vd~ 306 (376)
-++.+ . .+.++.+.+.++. -+.+.-++=-|. -.+..+..+.++.+.+.+++.
T Consensus 104 s~~~~----~-----------~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ 168 (258)
T PRK01033 104 TAALE----D-----------PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGE 168 (258)
T ss_pred hHHhc----C-----------HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCE
Confidence 22211 0 1233333333321 133333332221 134556788888899999998
Q ss_pred EEee
Q 017179 307 MTFG 310 (376)
Q Consensus 307 v~~~ 310 (376)
+.+.
T Consensus 169 ii~~ 172 (258)
T PRK01033 169 ILLN 172 (258)
T ss_pred EEEE
Confidence 8775
No 225
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=89.45 E-value=15 Score=36.08 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CCCcEEEEecCCCCCChHHHHHHHHc-
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGNNGCVREVAKS- 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p~i~Ie~l~pd~~g~~e~l~~L~~a- 231 (376)
.++.++-+++++.+.+.|+++|-+.- |-..+ . =.+.++.|.+. .++..+.++.+... +.++...++
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~~~~--~--e~e~~~~i~~~~~~~~~~~~~al~r~~~---~die~a~~~~ 88 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGF---PSASQ--T--DFDFVRELIEEDLIPDDVTIQVLTQARE---DLIERTFEAL 88 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH--H--HHHHHHHHHHccCCCCCCEEEEEcCCCh---hhHHHHHHHh
Confidence 48999999999999999999998762 44433 1 23567777443 23577778887653 335566665
Q ss_pred -Ccc--cccccccchH-HHHHhhcCCCCCHHHHHH----HHHHHHHhCCCCce-EEEeEEEec-C----CC-HHHHHHHH
Q 017179 232 -GLN--VFAHNIETVE-ELQSAVRDHRANFKQSLD----VLMMAKDYVPAGTL-TKTSIMLGC-G----ET-PDQVVSTM 296 (376)
Q Consensus 232 -Gld--~i~h~lEtv~-~l~~~vr~r~~t~e~~L~----vl~~ak~~~p~Gi~-tkt~imvGl-G----ET-~ee~~e~L 296 (376)
|++ .+...+-+++ -+..+++ .+.++.++ +++.+++. |+. +.+++-+-+ | .+ .+.+.+.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~---~s~~e~~~~~~~~v~~a~~~---g~~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFG---KSKEEIIEIAVDGAKLVKEL---AAKYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceEEEEECCccCCCCCHHHHHHHH
Confidence 554 4666666777 4444554 34555555 55566663 432 234555555 5 35 45567777
Q ss_pred HHHHHc---CCc---EEEe
Q 017179 297 EKVRAA---GVD---VMTF 309 (376)
Q Consensus 297 ~~Lrel---~vd---~v~~ 309 (376)
+.+.+. +++ .|.+
T Consensus 163 ~~~~~~~~~g~~~~~~i~l 181 (284)
T cd07942 163 EAVIDVWQPTPENKIILNL 181 (284)
T ss_pred HHHHHhhcCCCCcceEEEc
Confidence 777776 444 5555
No 226
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.41 E-value=5.8 Score=37.20 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.++++.++.+.+.|++++++---+.. ..+.....+.|+.|.+..+ +.+.+ -+..+ +.+.++.+.++|++.+..+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~---~~~~~~~~~~i~~i~~~~~-~~l~v-~GGi~-~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGA---FEGERKNAEAIEKIIEAVG-VPVQL-GGGIR-SAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhh---hcCCcccHHHHHHHHHHcC-CcEEE-cCCcC-CHHHHHHHHHcCCCEEEEC
Confidence 45788888888999999987633211 1122345667777777653 33332 22222 5778899999999987654
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEe----EEE--ec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTS----IML--GC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~----imv--Gl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-+..+ + .+.++.+.+.++. -+.+..+ -++ |. .++..+..+..+.+.+.+++.+.+.
T Consensus 106 s~~~~-----------~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~ 169 (241)
T PRK13585 106 TAAVE-----------N----PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFT 169 (241)
T ss_pred hHHhh-----------C----hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEE
Confidence 32211 0 1223333333221 1222222 112 33 3333467778888889999988774
No 227
>PLN02321 2-isopropylmalate synthase
Probab=89.22 E-value=5.6 Score=43.37 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcccHHHHHHHHHHHHhhC-CCc----EEEEecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQGSGHFAQTVRKLKELK-PNM----LIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~g~~~~~elvr~Ik~~~-p~i----~Ie~l~pd~~g~~e~l~~L~ 229 (376)
.++.+|-+++++.+.+.|+++|-+..- ..++ | ++ .++.|.+.. +.+ .+..+..--+.+.+.++...
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--D--~e----~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~ 175 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--D--LE----AVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAW 175 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--H--HH----HHHHHHHhcccCCCccccceeeeeehhccHHhHHHHH
Confidence 489999999999999999999988652 1111 2 22 255554331 111 11212111122566667666
Q ss_pred HcCcc----cccccccchH-HHHHhhcCCCCCHHHHHHHH----HHHHHhCCCCc-eEEEeEEEecCCCHHHHHHHHHHH
Q 017179 230 KSGLN----VFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGT-LTKTSIMLGCGETPDQVVSTMEKV 299 (376)
Q Consensus 230 ~aGld----~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl----~~ak~~~p~Gi-~tkt~imvGlGET~ee~~e~L~~L 299 (376)
+++.+ .+...+-+++ .+..+++ .+.++.++.+ +.|++ .|. .+.-+..-+.--+.+.+.+.++.+
T Consensus 176 ~al~~a~~~~I~i~~stSd~h~~~~l~---~t~ee~l~~~~~~V~~Ak~---~G~~~v~fs~EDa~rtd~d~l~~~~~~a 249 (632)
T PLN02321 176 EAVKHAKRPRIHTFIATSEIHMEHKLR---KTPDEVVEIARDMVKYARS---LGCEDVEFSPEDAGRSDPEFLYRILGEV 249 (632)
T ss_pred HHhcCCCCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH---cCCceEEEecccCCCCCHHHHHHHHHHH
Confidence 66332 3555555666 3444443 4677776644 55555 233 233333222223456677888999
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
.+.|++.|.+
T Consensus 250 ~~aGa~~I~L 259 (632)
T PLN02321 250 IKAGATTLNI 259 (632)
T ss_pred HHcCCCEEEe
Confidence 9999999887
No 228
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=88.90 E-value=9.7 Score=34.72 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEE----EecCCCCCChHHHHHHHHcC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE----ALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie----~l~pd~~g~~e~l~~L~~aG 232 (376)
.++++.++.++++ +-|++-|-++..... ..| .+.|+.|++.+|+..+- ++.|+ ...++.+.++|
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~---~~g----~~~i~~l~~~~~~~~i~~d~k~~d~~----~~~~~~~~~~G 76 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIK---NEG----IEAVKEMKEAFPDRKVLADLKTMDAG----EYEAEQAFAAG 76 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHH---HhC----HHHHHHHHHHCCCCEEEEEEeeccch----HHHHHHHHHcC
Confidence 5678889999988 778776655322110 111 56788888877754332 22222 23588899999
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl---GET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+|.+....++.. ....++++.+++ .|+.+ ++++ .+..+++ ..+.++++|++.+
T Consensus 77 ad~i~vh~~~~~-------------~~~~~~i~~~~~---~g~~~----~~~~~~~~t~~~~~----~~~~~~g~d~v~~ 132 (206)
T TIGR03128 77 ADIVTVLGVADD-------------ATIKGAVKAAKK---HGKEV----QVDLINVKDKVKRA----KELKELGADYIGV 132 (206)
T ss_pred CCEEEEeccCCH-------------HHHHHHHHHHHH---cCCEE----EEEecCCCChHHHH----HHHHHcCCCEEEE
Confidence 998876544321 223467777777 35432 3342 2323333 3345679999988
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
+
T Consensus 133 ~ 133 (206)
T TIGR03128 133 H 133 (206)
T ss_pred c
Confidence 5
No 229
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=88.89 E-value=13 Score=36.08 Aligned_cols=161 Identities=14% Similarity=0.003 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.++|++.|+...+.|++.++|. || |+|...-.++|++|.+ .+ +.|++ -+-.+ . +.++.+.++|++.+-.
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvV-----DL-dgg~~~n~~~i~~i~~-~~-~~vqv-GGGIR-~-e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVI-----ML-GADDASLAAALEALRA-YP-GGLQV-GGGVN-S-ENAMSYLDAGASHVIV 110 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE-----EC-CCCCcccHHHHHHHHh-CC-CCEEE-eCCcc-H-HHHHHHHHcCCCEEEE
Confidence 3689999999999999999987 33 2222222678888877 43 55543 22333 4 8899999999998877
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeE--------EEecC---CCHHHHHHHHHHHHHcCCcE
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSI--------MLGCG---ETPDQVVSTMEKVRAAGVDV 306 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~-p~Gi~tkt~i--------mvGlG---ET~ee~~e~L~~Lrel~vd~ 306 (376)
+=-. +..+..+. +.++.+.+.+ |.-+.+..+. +.=-| +|.-+..+.+..+.+.++..
T Consensus 111 gT~A-------v~~~~~~p----~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~e 179 (262)
T PLN02446 111 TSYV-------FRDGQIDL----ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDE 179 (262)
T ss_pred chHH-------HhCCCCCH----HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCE
Confidence 5110 11011122 2333333333 2213332222 11112 25667788778888888887
Q ss_pred EEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+-+..--+- ++. .. | -++.+++++.......++||
T Consensus 180 ii~TdI~rD---Gtl-~G---~-d~el~~~l~~~~~ipVIASG 214 (262)
T PLN02446 180 FLVHGVDVE---GKR-LG---I-DEELVALLGEHSPIPVTYAG 214 (262)
T ss_pred EEEEEEcCC---Ccc-cC---C-CHHHHHHHHhhCCCCEEEEC
Confidence 766433222 221 11 1 35566666666666666766
No 230
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=88.62 E-value=7.1 Score=37.33 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhC----CCcEEEEecCCCCCChHHHHHHHHcCccccccc--ccchHHHHHhhcCCCCCHHHHHHHHHH
Q 017179 193 GHFAQTVRKLKELK----PNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN--IETVEELQSAVRDHRANFKQSLDVLMM 266 (376)
Q Consensus 193 ~~~~elvr~Ik~~~----p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~--lEtv~~l~~~vr~r~~t~e~~L~vl~~ 266 (376)
+.|...++.|++.. |.+.|.+--+-..+..+.++.|.+-.+|.+-.+ +-|.-.-+... +.-+.++.+++++.
T Consensus 136 ~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~--~pp~~eE~i~v~~~ 213 (275)
T COG1856 136 EDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS--PPPPVEEAIKVVKY 213 (275)
T ss_pred HHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCC--CCcCHHHHHHHHHH
Confidence 45666666666543 445554433334445677888877777765443 23322112222 45789999999999
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 267 ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
|++.+|+ ++..+.|==.||..-++. +++..+++|.|++
T Consensus 214 AR~~f~~--pv~iGCmrP~Ge~rvk~d---~~av~~gVd~It~ 251 (275)
T COG1856 214 ARKKFPN--PVSIGCMRPRGEWRVKLD---KEAVLAGVDRITF 251 (275)
T ss_pred HHHhCCC--CeeEeecCcCchhHHHHH---HHHHHcCCceeec
Confidence 9999986 677777777787655554 5667789999987
No 231
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.41 E-value=20 Score=35.18 Aligned_cols=167 Identities=10% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..++++..+.+.--|+-++...-.+ .|.+.+..+++...+.. .+.|- +.-|+..+.+.+....++|.+++
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpv~-lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH--SPLHLIGPLMVAAAKQA-KVPVA-VHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc--CChHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4567778888888888876665555433222 34667777777766654 23333 45566557888999999998877
Q ss_pred cccccchHHHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCceEEEeE-EEe-------c-CCCHHHHHHHHHHHHHcC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGTLTKTSI-MLG-------C-GETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi~tkt~i-mvG-------l-GET~ee~~e~L~~Lrel~ 303 (376)
.+- ....++++. .++.+.+++ .|+.+...+ -+| . |.+-.+..+..++.++.+
T Consensus 102 m~d------------~s~~~~~eni~~t~~v~~~a~~---~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg 166 (281)
T PRK06806 102 MFD------------GSHLPLEENIQKTKEIVELAKQ---YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD 166 (281)
T ss_pred EEc------------CCCCCHHHHHHHHHHHHHHHHH---cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC
Confidence 541 122334443 345555555 355554332 223 1 222235556677777889
Q ss_pred CcEEEe--ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 304 VDVMTF--GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 304 vd~v~~--~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+|++.+ |+.. ++.+ ..++-.++.|+++........|+=|
T Consensus 167 ~DyLAvaiG~~h-g~~~------~~~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 167 VDALAVAIGNAH-GMYN------GDPNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CCEEEEccCCCC-CCCC------CCCccCHHHHHHHHHhcCCCEEEEC
Confidence 999998 6332 2221 1122346667777666555445433
No 232
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.41 E-value=2 Score=43.17 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHH--CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 159 PDEPTNVAEAIAS--WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 159 ~eEi~~~a~al~~--~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
+++. +.++++.+ .|++.|+|-.-+ +-..++.++|+.||+.+|++.| .-++. .+.+..+.|.++|+|.+
T Consensus 107 ~~d~-er~~~L~~~~~g~D~iviD~Ah------Ghs~~~i~~ik~ik~~~P~~~v--IaGNV-~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 107 DADF-EKTKQILALSPALNFICIDVAN------GYSEHFVQFVAKAREAWPDKTI--CAGNV-VTGEMVEELILSGADIV 176 (346)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEECCC------CcHHHHHHHHHHHHHhCCCCcE--EEecc-cCHHHHHHHHHcCCCEE
Confidence 4554 44556665 599999985443 3367899999999999998654 33332 26788999999999998
Q ss_pred ccc
Q 017179 237 AHN 239 (376)
Q Consensus 237 ~h~ 239 (376)
-.+
T Consensus 177 KVG 179 (346)
T PRK05096 177 KVG 179 (346)
T ss_pred EEc
Confidence 544
No 233
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.25 E-value=11 Score=36.45 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=49.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCc----ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLAD----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d----~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
.++++++++.|++..+.|.+.|-|=+. .+++... ...+.+..+|+.|++.. ++.|. +-.+ +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plS--IDT~--~~~v~e~al~ 94 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLIS--VDTF--RAEVARAALE 94 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEE--EeCC--CHHHHHHHHH
Confidence 478999999999999999999988332 2333221 12345666777777653 23332 2222 5677777777
Q ss_pred cCccccc
Q 017179 231 SGLNVFA 237 (376)
Q Consensus 231 aGld~i~ 237 (376)
+|.+.+|
T Consensus 95 ~G~~iIN 101 (257)
T cd00739 95 AGADIIN 101 (257)
T ss_pred hCCCEEE
Confidence 7888776
No 234
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=87.93 E-value=10 Score=40.85 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=85.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CCCcEEEEecCCCCCC-hHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGN-NGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (376)
+++.++=+++++.|.+.|+++|-+.-..-. ... .+.++++.+. .++..+.++.+...++ +..++.+..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s------~~D-~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~ 116 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVGFPSAS------QTD-FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGA 116 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC------HHH-HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCC
Confidence 589999999999999999999987522111 112 2344444333 1357888888865432 2334444445
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHHHHHHH----HHHhCCCC-ceEEEeEEEec-CC----C-HHHHHHHHHHH
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMM----AKDYVPAG-TLTKTSIMLGC-GE----T-PDQVVSTMEKV 299 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~----ak~~~p~G-i~tkt~imvGl-GE----T-~ee~~e~L~~L 299 (376)
+.+.+...+-+++ -+...++ .+.++.++.+.. +++....+ ..+.+.+.+-| +| + .+.+++.++.+
T Consensus 117 ~~~~v~i~~~~Sd~h~~~~l~---~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a 193 (564)
T TIGR00970 117 KRATVHFYNATSILFREVVFR---ASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAV 193 (564)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHH
Confidence 5456777777777 3334443 567777665544 55532111 12345556666 77 5 46677888999
Q ss_pred HHcCCc
Q 017179 300 RAAGVD 305 (376)
Q Consensus 300 rel~vd 305 (376)
.+.+.+
T Consensus 194 ~~ag~~ 199 (564)
T TIGR00970 194 KEVWAP 199 (564)
T ss_pred HHhCCC
Confidence 999763
No 235
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=87.87 E-value=10 Score=35.20 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+|.+.|+.+.+.|++++++. |.+.... |...-.++++.+.+..+ +.+ .......+.+.++.+.++|++.+-.+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~-g~~~~~~~i~~i~~~~~-~pi--~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKE-GGPVNLPVIKKIVRETG-VPV--QVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCcccc-CCCCcHHHHHHHHHhcC-CCE--EEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 467888999999999999984 4333322 12223567777766542 323 33444447889999999999876443
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE------EecCC-CHHHHHHHHHHHHHcCCcEEEee
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM------LGCGE-TPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im------vGlGE-T~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-+..+ +.+...++.+... ..-+.+..++- -|.-| +..+..+.++.+.+.+++.+.+.
T Consensus 102 s~~l~-----------d~~~~~~~~~~~g---~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVE-----------NPDLVKELLKEYG---PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhh-----------CHHHHHHHHHHhC---CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 22111 1122223333321 11133333322 12211 23566788888899999977764
No 236
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.80 E-value=12 Score=36.89 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=103.3
Q ss_pred CCcEEEEEeee---CCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCC----hHHHHHHHHcCcccccccccchH
Q 017179 173 GLDYVVITSVD---RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGN----NGCVREVAKSGLNVFAHNIETVE 244 (376)
Q Consensus 173 G~~eIvLTsg~---r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~----~e~l~~L~~aGld~i~h~lEtv~ 244 (376)
|++-+-+||.- .-.+||+|.-.+.+++..++...+.+.+-+ ...|-.++ ...++.+.++|+..+ ++| |
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi--~iE--D 113 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAV--CIE--D 113 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEE--EEe--c
Confidence 99988777642 234667653334444444443332221111 11121133 445788889887654 444 2
Q ss_pred HHHHhhcC--------CCCCHHHHHHHHHHHHHhCC-CCceE--EEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 245 ELQSAVRD--------HRANFKQSLDVLMMAKDYVP-AGTLT--KTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 245 ~l~~~vr~--------r~~t~e~~L~vl~~ak~~~p-~Gi~t--kt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..+++.|+ .-.+.++..+.|+.+++... ..+.+ .|+-.++ ++..+|.++-.+...+.|.|.+-+ .+.
T Consensus 114 q~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv-~~~ 191 (285)
T TIGR02320 114 KLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI-HSR 191 (285)
T ss_pred cCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence 23333221 12467899999999887521 11333 4444321 345788888899999999998876 332
Q ss_pred CCC-----------CC---CCCCcccCC--h-HHHHHHHHHHHHHhhhhhccc-hhHhhhhhhcHHHHHHHHHhh
Q 017179 314 RPS-----------KR---HMPVSEYIT--P-EAFERYRALGMEMGFRYVASG-PMVRSSYKAGEFYIKSMIESD 370 (376)
Q Consensus 314 ~P~-----------~~---~~~v~~~v~--p-e~~~~l~~~a~~~gf~~~~sg-p~vrssy~a~~~~~~~~~~~~ 370 (376)
.++ .. ..|+.-... | -.+++|. ++||..+.-| -+.|..|+|-+.....+++..
T Consensus 192 ~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~----~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 192 KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR----DAGISVVIYANHLLRAAYAAMQQVAERILEHG 262 (285)
T ss_pred CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH----HcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcC
Confidence 121 10 123211010 1 1244444 4588887543 356999999888888877544
No 237
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.78 E-value=6.2 Score=38.07 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=66.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+-.+.+- ..-+.+++.++++.+.+.... ...+|+|. +.+-+|.++..+..+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~-------~~lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES-------PTLSDEEHEAVIEAVVEAVNG----RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcch-------hhCCHHHHHHHHHHHHHHhCC----CCcEEeccCCccHHHHHHHHHHHH
Confidence 456677778888776443222221 135678899999988886432 45688999 578999999999999
Q ss_pred HcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHh
Q 017179 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMG 342 (376)
Q Consensus 301 el~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~g 342 (376)
++|+|.+-+. .|. ..+.. ..+-++++++++...+
T Consensus 93 ~~G~d~v~~~---~P~--~~~~~---~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 93 KAGADAALVV---TPY--YNKPS---QEGLYAHFKAIAEATD 126 (284)
T ss_pred HcCCCEEEEc---ccc--cCCCC---HHHHHHHHHHHHhcCC
Confidence 9999977663 231 11111 1344666777766533
No 238
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.77 E-value=2.6 Score=41.01 Aligned_cols=110 Identities=13% Similarity=0.247 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhCCCcEEEEec---CCCCCChHHHHHHHHcCcccccccccc---------hH-HHHHhhcCCCCCHHHHH
Q 017179 195 FAQTVRKLKELKPNMLIEALV---PDFRGNNGCVREVAKSGLNVFAHNIET---------VE-ELQSAVRDHRANFKQSL 261 (376)
Q Consensus 195 ~~elvr~Ik~~~p~i~Ie~l~---pd~~g~~e~l~~L~~aGld~i~h~lEt---------v~-~l~~~vr~r~~t~e~~L 261 (376)
+.+.++++++..-...|-.++ |+.....+.++.|.++|+|.+..++-. .. ...+.++ .+.+.++.+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~-~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALA-AGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHH-CCCCHHHHH
Confidence 445566666554334444333 333224566777788888888776422 22 2334566 588999999
Q ss_pred HHHHHHHHhCCCCceEEEeEEEec-CCC-HHHHHHHHHHHHHcCCcEEEe
Q 017179 262 DVLMMAKDYVPAGTLTKTSIMLGC-GET-PDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 262 ~vl~~ak~~~p~Gi~tkt~imvGl-GET-~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++++.+++..+. +-- ++++. ..- .--+...++.+++.|+|-+-+
T Consensus 83 el~~~~r~~~~~---~Pi-vlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 83 ELVEEIRAKGVK---VPI-VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHhcCCC---CCE-EEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 999999974221 112 22222 221 122344577788888887766
No 239
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.47 E-value=5.2 Score=39.09 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=61.9
Q ss_pred CCcEEEEecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE
Q 017179 207 PNMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT 279 (376)
Q Consensus 207 p~i~Ie~l~pd~-~g--~----~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt 279 (376)
.++..-.++|-- .+ | ...++.+.+.|++.+-.+=.|.+- ..-+.+++.++++.+.+.... +.
T Consensus 7 ~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~-------~~Lt~eEr~~v~~~~~~~~~g----~~ 75 (296)
T TIGR03249 7 SGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEF-------FSLTPAEYEQVVEIAVSTAKG----KV 75 (296)
T ss_pred CceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCc-------ccCCHHHHHHHHHHHHHHhCC----CC
Confidence 456666677721 11 2 455677777887765433222221 235688999999988885422 55
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
.+|+|.|.+-+|-++..+...+.|+|.+-+
T Consensus 76 pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 76 PVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred cEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 688888778889999999999999987655
No 240
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.38 E-value=2.5 Score=44.49 Aligned_cols=133 Identities=19% Similarity=0.299 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.++++.+.|++-|+|-.-+ +-...+.++|+.|++.+|++.|-+ ++..+.+..+.|.++|+|.+..+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~------g~~~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH------GHQVKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC------CCcHHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCCCEEEEC
Confidence 577788999999999999985443 224679999999999988866543 44447899999999999998744
Q ss_pred cc----chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IE----TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lE----tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+= +.-+.+.-+. .....-.+++.+.+++. |+++-++ |=--+..|+...|. +|-+.|.+|-+|
T Consensus 295 ~g~Gs~~ttr~~~~~g--~~~~~a~~~~~~~~~~~---~~~viad---Ggi~~~~di~kala----~GA~~vm~g~~~ 360 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVG--RPQFSAVLECAAEARKL---GGHVWAD---GGVRHPRDVALALA----AGASNVMVGSWF 360 (475)
T ss_pred CcCCccccCccccCCC--CchHHHHHHHHHHHHHc---CCcEEEe---CCCCCHHHHHHHHH----cCCCEEeechhh
Confidence 32 1113332222 23455556666666663 3432221 11257777776654 677888887665
No 241
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.10 E-value=16 Score=33.08 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++..+.++.+.+.|++.|+|.-. |.. ...+.+.++.+++......+.+++. +.++.+.++|+|.+...
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREK---GLD---TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLG 88 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCC---CCC---HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecC
Confidence 45667788888999999987532 222 2334556666554321122223443 34777888999876442
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.+..+ ...++..+. .|. ++|. --|.+|..+.. +.++|+|.++.++
T Consensus 89 ~~~~~----------------~~~~~~~~~---~~~------~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~ 134 (212)
T PRK00043 89 QDDLP----------------VADARALLG---PDA------IIGLSTHTLEEAAAAL----AAGADYVGVGPIF 134 (212)
T ss_pred cccCC----------------HHHHHHHcC---CCC------EEEEeCCCHHHHHHHh----HcCCCEEEECCcc
Confidence 22100 111122211 222 3343 34777665443 6799999987655
No 242
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=87.10 E-value=16 Score=35.48 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee--C----CCCCcccHHHHHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD--R----DDLADQGSGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~--r----~dl~d~g~~~~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
++++..+.|+.+.+.|++.|-|.-.- . +.+. ...+.+.++++++++.. | +.+. +.|+.....+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~~~P-v~vK-l~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKATDVP-VIVK-LTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhccCCC-EEEE-eCCCchhHHHHHHHHH
Confidence 37889999999999999988885431 0 1111 12466788999998863 3 4444 4555422245567788
Q ss_pred HcCcccccc-c--------ccchHHHH----HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C-CCHHHHHH
Q 017179 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G-ETPDQVVS 294 (376)
Q Consensus 230 ~aGld~i~h-~--------lEtv~~l~----~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-G-ET~ee~~e 294 (376)
++|+|.+.. | .++..... .-+. ........++.++.+++.. +++ |+|- | .+.+|+.+
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~--~ip-----ii~~GGI~~~~da~~ 248 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV--EIP-----IIGVGGIASGEDALE 248 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc--CCC-----EEEECCCCCHHHHHH
Confidence 899986532 1 11110000 0011 1122334677777777742 122 3333 3 57788887
Q ss_pred HHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 295 TMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 295 ~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.|. .|.|.|-++..+ .. -| .+..+-.+.+.++..+.||..+
T Consensus 249 ~l~----~GAd~V~igra~---l~-~p---~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 249 FLM----AGASAVQVGTAN---FV-DP---EAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHH----cCCCEEEEchhh---hc-Ch---HHHHHHHHHHHHHHHHcCCCCH
Confidence 773 688999887322 11 11 1112234445566667777554
No 243
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=87.04 E-value=9.6 Score=39.69 Aligned_cols=129 Identities=21% Similarity=0.288 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++-.+.++++.+.|++-|+|+.-++. ..+..+.|+.|++.+|++.|-+ ++.. +.+..+.+.++|+|.+..+
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~--G~v~-t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA--GNVA-TAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE--EeCC-CHHHHHHHHHhCCCEEEEC
Confidence 34567788999999999999775432 4568899999999888765533 2221 6788999999999998433
Q ss_pred -----ccchHHHHHhhcCCC-CCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 240 -----IETVEELQSAVRDHR-ANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 240 -----lEtv~~l~~~vr~r~-~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+.+.. .+.+.+ ....-..++.+.+++ .|+++-+ +| -+..|+...|. +|.+.|-+|.
T Consensus 294 ~g~G~~~~t~----~~~~~g~p~~~~i~~~~~~~~~---~~vpviadGGi-----~~~~di~kAla----~GA~~V~~G~ 357 (450)
T TIGR01302 294 IGPGSICTTR----IVAGVGVPQITAVYDVAEYAAQ---SGIPVIADGGI-----RYSGDIVKALA----AGADAVMLGS 357 (450)
T ss_pred CCCCcCCccc----eecCCCccHHHHHHHHHHHHhh---cCCeEEEeCCC-----CCHHHHHHHHH----cCCCEEEECc
Confidence 22222 121111 122333344444444 2344322 33 67788877664 5889888886
Q ss_pred CC
Q 017179 312 YM 313 (376)
Q Consensus 312 Y~ 313 (376)
.|
T Consensus 358 ~~ 359 (450)
T TIGR01302 358 LL 359 (450)
T ss_pred hh
Confidence 66
No 244
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.94 E-value=14 Score=35.60 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEE---ecCCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEA---LVPDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~---l~pd~ 218 (376)
.+++.-.+.++++.+.|++-|-|----.|-+.||. .+.+.+++++|++..+++.+-. .-|-+
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 46788888899999999988877433333344431 2467788888886533333222 22322
Q ss_pred C-CChHHHHHHHHcCcccccccc---cchHHHHHhhcC----------CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe
Q 017179 219 R-GNNGCVREVAKSGLNVFAHNI---ETVEELQSAVRD----------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG 284 (376)
Q Consensus 219 ~-g~~e~l~~L~~aGld~i~h~l---Etv~~l~~~vr~----------r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG 284 (376)
. |.++.++.++++|+|.+-..- |...++...++. +..+.++...+++.+ .|+.-.-+.. |
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~-----~gfiy~vs~~-G 174 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS-----QGFVYLVSRA-G 174 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC-----CCCEEEEECC-C
Confidence 2 336779999999999865542 333445444331 222333333333322 2454443444 8
Q ss_pred c-CCC---HHHHHHHHHHHHHc
Q 017179 285 C-GET---PDQVVSTMEKVRAA 302 (376)
Q Consensus 285 l-GET---~ee~~e~L~~Lrel 302 (376)
+ |+. ..++.+.++.++++
T Consensus 175 ~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 175 VTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CCCCcccCChhHHHHHHHHHhh
Confidence 8 763 46678888888875
No 245
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=86.78 E-value=8.8 Score=36.15 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++||.+..++++.+-|++-|-||= |. ++ -.+.|+.+++.+|++.|.+=+ -+ +.+.++.+.++|.+.+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~s--p~-----a~e~I~~l~~~~p~~lIGAGT-VL--~~~q~~~a~~aGa~fi 89 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RT--PA-----ALEAIRALAKEFPEALIGAGT-VL--NPEQARQAIAAGAQFI 89 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CC--CC-----HHHHHHHHHHhCcccEEcccc-cc--CHHHHHHHHHcCCCEE
Confidence 5789999999999999999888873 11 11 367899999999976665422 11 6889999999998865
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
|. ++.+ -++++.+.+ .|+.+.-+++ |.-|+...+ ++|.+.+.||
T Consensus 90 -------------Vs-P~~~----~ev~~~a~~---~~ip~~PG~~-----TptEi~~Al----e~G~~~lK~F 133 (211)
T COG0800 90 -------------VS-PGLN----PEVAKAANR---YGIPYIPGVA-----TPTEIMAAL----ELGASALKFF 133 (211)
T ss_pred -------------EC-CCCC----HHHHHHHHh---CCCcccCCCC-----CHHHHHHHH----HcChhheeec
Confidence 22 2322 256777777 4677777774 888877655 5677777776
No 246
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.54 E-value=22 Score=31.36 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEE--EecCC----CCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIE--ALVPD----FRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie--~l~pd----~~g~~e~l~~L~ 229 (376)
+.+.+.+.++.+.+.|++-|+++| ++++.+.+..++ +.+- +-.+. .....+.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~ 75 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 788899999999999999988876 234444333332 3332 22222 111345677888
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
++|+|.+... .-.|... ..+.+..++.++.+.+..+.++++....+.+.--+.+++.+..+.+.+.+++.+..
T Consensus 76 ~~Gad~i~v~----~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 76 DLGADEIDVV----INIGSLK---EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HcCCCEEEEe----ccHHHHh---CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 8888876431 1112111 11245555555555553212466665555444346788888888888899999887
Q ss_pred e
Q 017179 310 G 310 (376)
Q Consensus 310 ~ 310 (376)
+
T Consensus 149 ~ 149 (201)
T cd00945 149 S 149 (201)
T ss_pred C
Confidence 4
No 247
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=86.48 E-value=3.4 Score=41.85 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++-.+.++++.+.|++.++|-+-+. -..+..+.|+.||+.+|++.|- .+.. .+.+..+.|.++|+|.+-.+
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g------~s~~~~~~ik~ik~~~~~~~vi--aGNV-~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHG------HSEHVIDMIKKIKKKFPDVPVI--AGNV-VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SST------TSHHHHHHHHHHHHHSTTSEEE--EEEE--SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEccccCc------cHHHHHHHHHHHHHhCCCceEE--eccc-CCHHHHHHHHHcCCCEEEEe
Confidence 4457788889999999999966542 2678999999999999976553 2322 16788999999999998666
Q ss_pred cc-chHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IE-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lE-tv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+= .+--..+.+.. ......-..++-+.++++ |+++-++- | --+.-|+...| ..|-|.|-+|.+|
T Consensus 178 iGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~---~v~iIADG--G-i~~sGDi~KAl----a~GAd~VMlG~ll 243 (352)
T PF00478_consen 178 IGPGSICTTREVTGVGVPQLTAVYECAEAARDY---GVPIIADG--G-IRTSGDIVKAL----AAGADAVMLGSLL 243 (352)
T ss_dssp SSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT---TSEEEEES--S--SSHHHHHHHH----HTT-SEEEESTTT
T ss_pred ccCCcccccccccccCCcHHHHHHHHHHHhhhc---cCceeecC--C-cCcccceeeee----eecccceeechhh
Confidence 43 11111222221 122344455666666653 45554442 1 15677777665 3677888888666
No 248
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=86.14 E-value=3.6 Score=39.18 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEE--e-cCCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEA--L-VPDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~--l-~pd~ 218 (376)
.+.+...+.++.+.+.|++.+.|-=--.|-+.||. .....+.++.+++.. ++.+.+ . .|-|
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHH
Confidence 45688899999999999999988511111122321 125677888887653 233333 2 3323
Q ss_pred C-CChHHHHHHHHcCcccccc---cccchHHHHHhh
Q 017179 219 R-GNNGCVREVAKSGLNVFAH---NIETVEELQSAV 250 (376)
Q Consensus 219 ~-g~~e~l~~L~~aGld~i~h---~lEtv~~l~~~v 250 (376)
. |.++.++.++++|++.+-. ..|..+++.+.+
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 2 2367789999999997755 344444444443
No 249
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=85.88 E-value=2.5 Score=43.52 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
|+=....+.++..|++.|+|-|-. |...+..++|+.||+.+|++.|- -++.. +.+..+.|.++|+|.+-.+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSq------GnS~~qiemik~iK~~yP~l~Vi--aGNVV-T~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQ------GNSIYQLEMIKYIKETYPDLQII--AGNVV-TKEQAANLIAAGADGLRVG 320 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCC------CcchhHHHHHHHHHhhCCCceee--cccee-eHHHHHHHHHccCceeEec
Confidence 333455677889999999996543 33678999999999999987662 22221 5788999999999998766
Q ss_pred ccchH-HHHHhhc-CCCCCHHHHHHHHHHHHHh
Q 017179 240 IETVE-ELQSAVR-DHRANFKQSLDVLMMAKDY 270 (376)
Q Consensus 240 lEtv~-~l~~~vr-~r~~t~e~~L~vl~~ak~~ 270 (376)
+=+-. -+.+++. -.+.-.....++.+.|+..
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 43211 1222221 1122334566777777774
No 250
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=85.78 E-value=23 Score=31.31 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+++.+.++++.+.|+..|+|.-.+ .....+.+.++.|++......+.+++.+ .++...++|+|.+
T Consensus 11 ~~~~~~~l~~l~~~g~~~i~lr~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~v 76 (196)
T cd00564 11 GEDLLEVVEAALKGGVTLVQLREKD------LSARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGV 76 (196)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEE
Confidence 3567788888989999998876332 1233455566666654322334445533 3566778888855
No 251
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=85.72 E-value=11 Score=36.33 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHhhC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELK 206 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d------~g~~~~~elvr~Ik~~~ 206 (376)
.+..++...+..+.+.|++.|++.+||.+...+ .+..+-.++|+.++..+
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~ 125 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKEN 125 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 345788888999999999999999998654322 22345667777777654
No 252
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.97 E-value=20 Score=36.02 Aligned_cols=132 Identities=14% Similarity=0.227 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHCCC--cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 161 EPTNVAEAIASWGL--DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 161 Ei~~~a~al~~~G~--~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
+-.+.+.++.+.|+ +-|+|-.-+ +......++|+.|++.+|++.|-+ ++.. +.+....+.++|+|.+-.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~------gh~~~~~e~I~~ir~~~p~~~vi~--g~V~-t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAH------GHSDSVINMIQHIKKHLPETFVIA--GNVG-TPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC------CchHHHHHHHHHHHhhCCCCeEEE--EecC-CHHHHHHHHHcCcCEEEE
Confidence 34567888888865 988874433 225678899999999998755432 2211 678889999999998754
Q ss_pred cc-cchHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCce-EEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 239 NI-ETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTL-TKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 239 ~l-Etv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~-tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+. .......+.... ...+| -+..+..+.+... ++ +..+- -.+..|+...|. +|.+.|.+|.++
T Consensus 168 g~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~--ipVIAdGG----I~~~~Di~KaLa----~GA~aV~vG~~~ 233 (326)
T PRK05458 168 GIGPGKVCITKIKTGFGTGGW--QLAALRWCAKAAR--KPIIADGG----IRTHGDIAKSIR----FGATMVMIGSLF 233 (326)
T ss_pred CCCCCcccccccccCCCCCcc--HHHHHHHHHHHcC--CCEEEeCC----CCCHHHHHHHHH----hCCCEEEechhh
Confidence 32 111111111110 11222 2334555555321 21 22222 378888887765 488998888666
No 253
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.94 E-value=31 Score=31.74 Aligned_cols=121 Identities=13% Similarity=0.229 Sum_probs=72.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+++.+.|++..+.|.+-+++..-+. ...+. .+.++.|++.. ++.|. ..++.-+.+.++.+.++|+|.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~--~~~g~----~~~~~~i~~~v-~iPi~--~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPK--YFQGS----LEDLRAVREAV-SLPVL--RKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCcc--ccCCC----HHHHHHHHHhc-CCCEE--ECCeecCHHHHHHHHHcCCCEE
Confidence 5778899999999999999997753221 11111 24556665542 33332 3454446678999999999988
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
..+... ...+..-+.++.++.. |+.+ |+.. -+++| ++.+.+.+++++.++
T Consensus 99 ~l~~~~------------~~~~~~~~~~~~~~~~---g~~~----~v~v-~~~~e----~~~~~~~g~~~i~~t 148 (217)
T cd00331 99 LLIVAA------------LDDEQLKELYELAREL---GMEV----LVEV-HDEEE----LERALALGAKIIGIN 148 (217)
T ss_pred EEeecc------------CCHHHHHHHHHHHHHc---CCeE----EEEE-CCHHH----HHHHHHcCCCEEEEe
Confidence 754211 1123334455555552 4433 4433 26665 444556788888775
No 254
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=84.89 E-value=22 Score=34.94 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=79.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++++.|+++.+.|.+-|-|=|. .|++...- -.+.+..+|+.|++.. ++.| ++-.+ +.+.++.-.+
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I--SIDT~--~~~va~~AL~ 108 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI--SVDTS--KPEVIRESAK 108 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE--EEECC--CHHHHHHHHH
Confidence 368999999999999999988877443 24443211 1234666777777543 3333 33233 5777888888
Q ss_pred cCcccccc--cccchHHHHHhh----------cCC--------CCCH--------HHHHHHHHHHHHhCCCCc---eEEE
Q 017179 231 SGLNVFAH--NIETVEELQSAV----------RDH--------RANF--------KQSLDVLMMAKDYVPAGT---LTKT 279 (376)
Q Consensus 231 aGld~i~h--~lEtv~~l~~~v----------r~r--------~~t~--------e~~L~vl~~ak~~~p~Gi---~tkt 279 (376)
+|++.+|- ++. .+++++.+ ..+ ...| +..-+.++.+.+ .|+ .+-.
T Consensus 109 ~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~---~GI~~~~Iil 184 (282)
T PRK11613 109 AGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEA---AGIAKEKLLL 184 (282)
T ss_pred cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHH---cCCChhhEEE
Confidence 88888733 121 12222211 100 1111 222344455555 465 3444
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcC
Q 017179 280 SIMLGCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 280 ~imvGlGET~ee~~e~L~~Lrel~ 303 (376)
+--+|||.+.++=++.|+.|..+.
T Consensus 185 DPGiGF~k~~~~n~~ll~~l~~l~ 208 (282)
T PRK11613 185 DPGFGFGKNLSHNYQLLARLAEFH 208 (282)
T ss_pred eCCCCcCCCHHHHHHHHHHHHHHH
Confidence 444699999988777777765553
No 255
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.83 E-value=21 Score=34.69 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcC--cccccccccchHHHHHhhcC-CCCCHHHHHHH
Q 017179 188 ADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSG--LNVFAHNIETVEELQSAVRD-HRANFKQSLDV 263 (376)
Q Consensus 188 ~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aG--ld~i~h~lEtv~~l~~~vr~-r~~t~e~~L~v 263 (376)
...|.+.+.+.++..++..+ .+.+.+.-.+...-.+..+.+.+++ .|.+..|+-.-.. +.... -..+.+...++
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~--~~~g~~l~~~~~~~~ei 148 (300)
T TIGR01037 71 QNPGVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV--KGGGIAIGQDPELSADV 148 (300)
T ss_pred CCcCHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC--CCCccccccCHHHHHHH
Confidence 33356677777766554432 1333332211100134456666553 7877777543221 00000 12467888889
Q ss_pred HHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 264 LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 264 l~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++.+++....-+.+|.. -+.+|..+..+.+.+.|+|.+++.
T Consensus 149 v~~vr~~~~~pv~vKi~------~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 149 VKAVKDKTDVPVFAKLS------PNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHhcCCCEEEECC------CChhhHHHHHHHHHHcCCCEEEEE
Confidence 99988853111223332 355788999999999999999885
No 256
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=84.72 E-value=15 Score=34.62 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.|+-.+.+.++.+.+.|++.+++==-|..-.|...+. .++++.|++..++ +.+++.+-+ ....++.++++|+|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg--~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG--APICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccC--HHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 4566788889999999999999865554333321111 3567777764212 555555532 24568999999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L 296 (376)
.+....|+.+. ..++|+.+|+ .| .++++.+.-+-..+.+...+
T Consensus 84 ~i~~H~Ea~~~--------------~~~~l~~ik~---~g--~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 84 MITFHVEASEH--------------VDRTLQLIKE---HG--CQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred EEEEcccCccc--------------HHHHHHHHHH---cC--CcEEEEeCCCCCHHHHHHHH
Confidence 99998885321 2245555566 35 46677776664555554443
No 257
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.57 E-value=8.7 Score=37.29 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=49.4
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +..+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE-----~--~~ls~~Er~~~~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGE-----S--PTLTHEEHEELIRAVVEAVNG----RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCc-----c--ccCCHHHHHHHHHHHHHHhCC----CCcEEeecCCchHHHHHHHHHHHH
Confidence 44566666777766533212222 1 134677888888877775432 34578888 468888888888888
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|+|.+-+
T Consensus 94 ~~G~d~v~~ 102 (292)
T PRK03170 94 KAGADGALV 102 (292)
T ss_pred HcCCCEEEE
Confidence 888886655
No 258
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=84.47 E-value=13 Score=34.97 Aligned_cols=82 Identities=23% Similarity=0.375 Sum_probs=55.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|+..+.+.++.+.+.|++.+++==-|..-.|..... .+.|+.|++..|++.+.+ +.++- ....++.+.++|+|.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm~~~--p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLMVSN--PEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEECCCC--HHHHHHHHHHcCCCE
Confidence 4666788889999999999999866554333331111 467888887666654433 22322 345678999999999
Q ss_pred ccccccc
Q 017179 236 FAHNIET 242 (376)
Q Consensus 236 i~h~lEt 242 (376)
+....|+
T Consensus 92 itvH~ea 98 (228)
T PTZ00170 92 FTFHIEA 98 (228)
T ss_pred EEEeccC
Confidence 9887664
No 259
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=84.35 E-value=16 Score=34.56 Aligned_cols=128 Identities=15% Similarity=0.080 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..+|++.|+.+.+.|+++++|.=-+. .. |...-.++|+.|.+.. .+.+.+-- ..+ +.|.++.+..+|++.+-.
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~--~~--~~~~n~~~i~~i~~~~-~~~v~vgG-Gir-~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA--IM--GRGDNDEAIRELAAAW-PLGLWVDG-GIR-SLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc--cc--CCCccHHHHHHHHHhC-CCCEEEec-CcC-CHHHHHHHHHcCCCeEEE
Confidence 45789999999999999999873332 11 1223466788887653 23333222 222 678899999999887665
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEec---CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLGC---GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvGl---GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-++.+ . +.++.+-+.++. -+.+.-++-=|. -++..+..+.++.+.+. ++.+.+.
T Consensus 107 gt~~~~--------------~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 107 GTETLP--------------S--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred cceecc--------------c--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 544322 1 233333333332 122333322110 02444566667777777 7766664
No 260
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.27 E-value=19 Score=35.28 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCceEEEeEEEe----cCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 261 LDVLMMAKDYVPAGTLTKTSIMLG----CGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 261 L~vl~~ak~~~p~Gi~tkt~imvG----lGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+++++.+++..+.++.+...+=.+ -|.+.+|.++.++.|.+.++|++.+...
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 678888888764434333322211 2568999999999999999999998643
No 261
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.20 E-value=3.9 Score=43.07 Aligned_cols=133 Identities=17% Similarity=0.349 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.++++.+.|++-|+|-.-++. .....++|+.||+.+|++.| .-++.. +.+..+.|.++|+|.+..+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v--~agnv~-t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI--VAGNVV-TAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE--EeeccC-CHHHHHHHHHcCCCEEEEC
Confidence 56778899999999999988655443 35689999999999998655 333332 6788899999999998654
Q ss_pred ccc----hHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 IET----VEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 lEt----v~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+=+ .-+.+--+. ...+.-..++.+.+++ .|+++ |.=|=--+..|+...|. +|.+.+-+|.+|
T Consensus 297 ig~gsictt~~~~~~~--~p~~~av~~~~~~~~~---~~~~v---ia~ggi~~~~~~~~al~----~ga~~v~~g~~~ 362 (479)
T PRK07807 297 VGPGAMCTTRMMTGVG--RPQFSAVLECAAAARE---LGAHV---WADGGVRHPRDVALALA----AGASNVMIGSWF 362 (479)
T ss_pred ccCCcccccccccCCc--hhHHHHHHHHHHHHHh---cCCcE---EecCCCCCHHHHHHHHH----cCCCeeeccHhh
Confidence 432 112222222 1233333444444444 23332 12223367777776665 577777776665
No 262
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=83.86 E-value=13 Score=37.67 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHCCC----cEEEEEeeeCCCCCcccHHHHHHHH-HHH------------Hh--h----CCCcEEEEecC
Q 017179 160 DEPTNVAEAIASWGL----DYVVITSVDRDDLADQGSGHFAQTV-RKL------------KE--L----KPNMLIEALVP 216 (376)
Q Consensus 160 eEi~~~a~al~~~G~----~eIvLTsg~r~dl~d~g~~~~~elv-r~I------------k~--~----~p~i~Ie~l~p 216 (376)
++....++++..+|- -+.++-||.--.+|+.-.++|..-+ .++ +- . .-+++|+ --|
T Consensus 153 ~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE-TRP 231 (554)
T KOG2535|consen 153 LQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE-TRP 231 (554)
T ss_pred HHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee-cCc
Confidence 445566888999884 3556667753344432222332222 111 10 0 0123443 235
Q ss_pred CCCCChHHHHHHHHcCcccccccccch-HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHH
Q 017179 217 DFRGNNGCVREVAKSGLNVFAHNIETV-EELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVV 293 (376)
Q Consensus 217 d~~g~~e~l~~L~~aGld~i~h~lEtv-~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~ 293 (376)
|+- ....|..+..-|...+.++++.+ +.+-+.-+ |+++....-+....++. .|+++-++||--+ ---+.|+.
T Consensus 232 DyC-~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTN-RGHTV~aVce~F~laKD---aG~KvV~HMMPdLPNVg~eRDie 306 (554)
T KOG2535|consen 232 DYC-LKRHLSDMLTYGCTRLEIGVQSVYEDVARDTN-RGHTVKAVCESFHLAKD---AGFKVVAHMMPDLPNVGMERDIE 306 (554)
T ss_pred ccc-hhhhHHHHHhcCCceEEeccchhHHHhhhccc-CCccHHHHHHHhhhhhc---cCceeehhhCCCCCCCchhhhHH
Confidence 653 35668888888998888887654 46655556 89999999999999998 6899999999665 22233444
Q ss_pred HHHHHHH
Q 017179 294 STMEKVR 300 (376)
Q Consensus 294 e~L~~Lr 300 (376)
+..++..
T Consensus 307 qF~E~Fe 313 (554)
T KOG2535|consen 307 QFKEYFE 313 (554)
T ss_pred HHHHHhc
Confidence 4444443
No 263
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=83.69 E-value=12 Score=36.77 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred CcEEEEecCCC-CC--C----hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEe
Q 017179 208 NMLIEALVPDF-RG--N----NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTS 280 (376)
Q Consensus 208 ~i~Ie~l~pd~-~g--~----~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~ 280 (376)
++..-.++|-- .+ | ...++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+.... +..
T Consensus 10 Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE-----~--~~Lt~eEr~~~~~~~~~~~~~----~~p 78 (303)
T PRK03620 10 GLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGE-----F--FSLTPDEYSQVVRAAVETTAG----RVP 78 (303)
T ss_pred ceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcC-----c--ccCCHHHHHHHHHHHHHHhCC----CCc
Confidence 45555666621 11 2 45567777778776533211222 1 235678899999988875432 456
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+|+|.|.+.+|.++..+...++|+|.+-+
T Consensus 79 vi~gv~~~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 79 VIAGAGGGTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred EEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 78888668899999999999999997765
No 264
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.68 E-value=25 Score=33.97 Aligned_cols=17 Identities=0% Similarity=0.188 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHHHH
Q 017179 253 HRANFKQSLDVLMMAKD 269 (376)
Q Consensus 253 r~~t~e~~L~vl~~ak~ 269 (376)
.+.+.++.++.++.+++
T Consensus 69 ~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 69 AGVTLADVFELVREIRE 85 (258)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 35566666666666663
No 265
>PRK02227 hypothetical protein; Provisional
Probab=82.96 E-value=29 Score=33.30 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=97.3
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc-EEEEecCCCC-----CChHHHHH
Q 017179 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFR-----GNNGCVRE 227 (376)
Q Consensus 154 ~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i-~Ie~l~pd~~-----g~~e~l~~ 227 (376)
..+..+.++...+..+...|++||-+ |.....-.+.-.+.+..+++.++...++. .|-++..|+. ...+.+..
T Consensus 61 D~p~~p~~~~~aa~~~a~~GvDyVKv-Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~ 139 (238)
T PRK02227 61 DVPYKPGTISLAALGAAATGADYVKV-GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI 139 (238)
T ss_pred CCCCCchHHHHHHHHHHhhCCCEEEE-cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence 44567788888888899999999976 22111100001223444456666555543 5556666653 23566777
Q ss_pred HHHcCcccccccccchH----HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHc
Q 017179 228 VAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA 302 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~----~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel 302 (376)
.+++|.+. .+++|.. .+|..| +.++--+.++.+|+ .| +|.|| |-=. .+.+..|+.+
T Consensus 140 a~~aGf~g--~MlDTa~Kdg~~Lfd~l-----~~~~L~~Fv~~ar~---~G------l~~gLAGSL~---~~dip~L~~l 200 (238)
T PRK02227 140 AADAGFDG--AMLDTAIKDGKSLFDHM-----DEEELAEFVAEARS---HG------LMSALAGSLK---FEDIPALKRL 200 (238)
T ss_pred HHHcCCCE--EEEecccCCCcchHhhC-----CHHHHHHHHHHHHH---cc------cHhHhcccCc---hhhHHHHHhc
Confidence 88888663 3578753 566554 46777788888887 34 56677 5332 3456677999
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHH
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~ 337 (376)
+.|++.|---+--.. .-...+.|++...|++.
T Consensus 201 ~pD~lGfRgavC~g~---dR~~~id~~~V~~~~~~ 232 (238)
T PRK02227 201 GPDILGVRGAVCGGG---DRTGRIDPELVAELREA 232 (238)
T ss_pred CCCEEEechhccCCC---CcccccCHHHHHHHHHH
Confidence 999999832221111 01124568887777654
No 266
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=82.66 E-value=18 Score=34.12 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
....+|++.|+.+.+.|+++++|.=-+. .. .|...-.++|+.|.+..+ +.+.+=-+ .+ +.+.++.+.++|++.+
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLda--a~-~g~~~n~~~i~~i~~~~~-~~i~vgGG-Ir-s~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDA--AK-EGRGSNLELIKEIAKETG-IPIQVGGG-IR-SIEDAERLLDAGADRV 99 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHH--HC-CTHHHHHHHHHHHHHHSS-SEEEEESS-E--SHHHHHHHHHTT-SEE
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccC--cc-cCchhHHHHHHHHHhcCC-ccEEEeCc-cC-cHHHHHHHHHhCCCEE
Confidence 3456788899999999999999873221 11 133445688888888754 55543222 22 6888999999999977
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC-CceEEEeEEEe-----cCCC---HHHHHHHHHHHHHcCCcEE
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA-GTLTKTSIMLG-----CGET---PDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~-Gi~tkt~imvG-----lGET---~ee~~e~L~~Lrel~vd~v 307 (376)
-.+-++.+ + .+.++.+.+.++. -+.+.-++.-| .|.. .-+..+.++.+.+.++..+
T Consensus 100 vigt~~~~-------~--------~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 164 (229)
T PF00977_consen 100 VIGTEALE-------D--------PELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEI 164 (229)
T ss_dssp EESHHHHH-------C--------CHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEE
T ss_pred EeChHHhh-------c--------hhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEE
Confidence 66544322 0 0222222222221 13333333333 3333 4578899999999999887
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
-+..--+- ++. .. | .++.+++++.......+++| =|||
T Consensus 165 i~tdi~~d---Gt~-~G---~-d~~~~~~l~~~~~~~viasG-Gv~~ 202 (229)
T PF00977_consen 165 ILTDIDRD---GTM-QG---P-DLELLKQLAEAVNIPVIASG-GVRS 202 (229)
T ss_dssp EEEETTTT---TTS-SS------HHHHHHHHHHHSSEEEEES-S--S
T ss_pred EEeecccc---CCc-CC---C-CHHHHHHHHHHcCCCEEEec-CCCC
Confidence 66422222 221 11 2 35667777777777778887 4444
No 267
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.50 E-value=41 Score=31.86 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHH-CCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 160 DEPTNVAEAIAS-WGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~-~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+|.+.|+...+ .|+++++|.=-+. .. .|...-.++|++|.+. ..+.|.+ -+..+ +.|.++.+.++|++.+-.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~--a~-~~~~~n~~~I~~i~~~-~~~pi~v-GGGIr-s~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIG--AK-AQHAREFDYIKSLRRL-TTKDIEV-GGGIR-TKSQIMDYFAAGINYCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcc--cc-cCCcchHHHHHHHHhh-cCCeEEE-cCCcC-CHHHHHHHHHCCCCEEEE
Confidence 366778888888 5999999873221 11 1223356788888763 3344432 12222 788899999999998866
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EEecC---CCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----MLGCG---ETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i----mvGlG---ET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-++.+ ..+.++.+.+.+|..+.+.-+. ++-.| ++.-+..+.++.+.++++..+-+.
T Consensus 105 gt~a~~---------------~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 168 (234)
T PRK13587 105 GTKGIQ---------------DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYT 168 (234)
T ss_pred CchHhc---------------CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 644332 1234444444444323333332 22122 355566788888888888766554
No 268
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=82.22 E-value=7.7 Score=37.57 Aligned_cols=77 Identities=10% Similarity=0.196 Sum_probs=53.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--+.+ . ..-+.+++.++++.+.+..+. +.-+|+|. +.+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE-----~--~~Lt~~Er~~l~~~~~~~~~~----~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGE-----F--YSLTDEERKELLEIVVEAAAG----RVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTT-----G--GGS-HHHHHHHHHHHHHHHTT----SSEEEEEEESSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCcc-----c--ccCCHHHHHHHHHHHHHHccC----ceEEEecCcchhHHHHHHHHHHHh
Confidence 45566677778776543322222 1 134678889999998885432 45589999 679999999999999
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|+|.+-+
T Consensus 94 ~~Gad~v~v 102 (289)
T PF00701_consen 94 DAGADAVLV 102 (289)
T ss_dssp HTT-SEEEE
T ss_pred hcCceEEEE
Confidence 999997655
No 269
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=82.20 E-value=20 Score=34.34 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=96.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++.+--++.++.+.+.|+.-|--||--.+.. |. ...-.++++.|++ +|++...+|+|... -++.-.++|+.-
T Consensus 37 vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQ--l~D~~ev~k~i~~-~~Gv~yPVLtPNlk----Gf~~AvaaGa~E 109 (316)
T KOG2368|consen 37 VPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQ--LADHNEVMKGIRK-FPGVSYPVLTPNLK----GFEAAVAAGAEE 109 (316)
T ss_pred CCchHHHHHHHHHHHcCCceeeeecccCcccccc--ccchHHHHHhhhc-CCCccccccCcchh----hHHHHHhcCcee
Confidence 3333346778899999999888887643322 22 1224678888865 68899899999764 466677888877
Q ss_pred ccccccchHHHHHhhcCCCCCH----HHHHHHHHHHHHhCCCCceE--EEeEEEec-CC---CHHHHHHHHHHHHHcCCc
Q 017179 236 FAHNIETVEELQSAVRDHRANF----KQSLDVLMMAKDYVPAGTLT--KTSIMLGC-GE---TPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~----e~~L~vl~~ak~~~p~Gi~t--kt~imvGl-GE---T~ee~~e~L~~Lrel~vd 305 (376)
+...--.++ .|..-+ -..+. .++.++++.|++. ++++ --+..+|. -| +++-+.+..+.|.+.++.
T Consensus 110 vavFgaASe-~FslkN-iNctiees~~rf~~v~kaA~~~---ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCy 184 (316)
T KOG2368|consen 110 VAVFGAASE-AFSLKN-INCTIEESLKRFMEVLKAAQEH---NIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCY 184 (316)
T ss_pred EEeeehhhh-hhhhcc-CCccHHHHHHHHHHHHHHHHHc---CCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcE
Confidence 766433333 222211 12344 4455677777773 4554 45678888 44 688999999999999998
Q ss_pred EEEeecCC
Q 017179 306 VMTFGQYM 313 (376)
Q Consensus 306 ~v~~~qY~ 313 (376)
.|.+|.-+
T Consensus 185 EiSLGDTI 192 (316)
T KOG2368|consen 185 EISLGDTI 192 (316)
T ss_pred EEeccccc
Confidence 88776443
No 270
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=82.17 E-value=9.7 Score=36.86 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC----CcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC---CC-hHHHH-
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL----ADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR---GN-NGCVR- 226 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl----~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~---g~-~e~l~- 226 (376)
.+..++......+.+.|++.|++.+||.+.. +.+.+.+-.++|+.|++.+++..|.+ ..|+-. .+ .+.++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 4677888888899999999999877775421 12334556788888888777777764 555421 11 12233
Q ss_pred --HHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 227 --EVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 227 --~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
.=.++|++.+ |.-.-++.+.+.+.++.+++ .|+ +.-|+.|+
T Consensus 150 L~~K~~aGA~f~-------------iTQ~~fd~~~~~~~~~~~~~---~gi--~~PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYA-------------ITQLFFDNDDYYRFVDRCRA---AGI--DVPIIPGI 192 (272)
T ss_pred HHHHHHcCCCeE-------------eeccccCHHHHHHHHHHHHH---cCC--CCCEeccc
Confidence 3336676632 11123455666666666666 243 23466666
No 271
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=82.12 E-value=24 Score=33.86 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=96.8
Q ss_pred CCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc-EEEEecCCCCC-----ChHHHHH
Q 017179 154 PPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPDFRG-----NNGCVRE 227 (376)
Q Consensus 154 ~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i-~Ie~l~pd~~g-----~~e~l~~ 227 (376)
..++.|..+...+...+..|++||-+==-...+. +...+.+..++++++...++. .|-++..|+.. ..+..+.
T Consensus 61 Dlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~-~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~ 139 (235)
T PF04476_consen 61 DLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY-DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEI 139 (235)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH-HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHH
Confidence 4456677777667777788999998621101111 112344555667777665544 55667777631 2455667
Q ss_pred HHHcCcccccccccchH----HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHc
Q 017179 228 VAKSGLNVFAHNIETVE----ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAA 302 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~----~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel 302 (376)
++++|.+ ...++|.. .+|..| +.++--+.++.+|+ .| ++.|| |-=. .+.+..|+.+
T Consensus 140 a~~aG~~--gvMlDTa~Kdg~~L~d~~-----~~~~L~~Fv~~ar~---~g------L~~aLAGSL~---~~di~~L~~l 200 (235)
T PF04476_consen 140 AAEAGFD--GVMLDTADKDGGSLFDHL-----SEEELAEFVAQARA---HG------LMCALAGSLR---FEDIPRLKRL 200 (235)
T ss_pred HHHcCCC--EEEEecccCCCCchhhcC-----CHHHHHHHHHHHHH---cc------chhhccccCC---hhHHHHHHhc
Confidence 7888865 34678763 455544 46777888888888 34 56677 5332 3456677789
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHH
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRAL 337 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~ 337 (376)
+.|++.|---+=-+ +.--...+.|++...|++.
T Consensus 201 ~pD~lGfRGAvC~g--gdR~~G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 201 GPDILGFRGAVCGG--GDRRAGRIDPELVAALRAL 233 (235)
T ss_pred CCCEEEechhhCCC--CCcCccccCHHHHHHHHHh
Confidence 99999983222111 0111123568888877754
No 272
>PRK02227 hypothetical protein; Provisional
Probab=81.95 E-value=50 Score=31.74 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=99.7
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCCCh----HHHHHHHHcCccccccc
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNN----GCVREVAKSGLNVFAHN 239 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g~~----e~l~~L~~aGld~i~h~ 239 (376)
+|....+.|.+-|-+==-.+.. .| ..+..+|++|.+..++ ..|..-++|+-..+ ..+..+..+|+|.+-.+
T Consensus 12 EA~~Al~~GaDiIDvK~P~~Ga---LG-A~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 12 EALEALAGGADIIDVKNPKEGS---LG-ANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHhcCCCEEEccCCCCCC---CC-CCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 3445567777766332111111 13 2467888888877654 67777777764332 23455667888887665
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH----HHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP----DQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~----ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+- +..++++.+++++...+..+.--.-+.-+-+|+-+.. -.-.+.+..+.+.+++.+-+=.+.
T Consensus 88 l~-----------~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~-- 154 (238)
T PRK02227 88 LY-----------GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI-- 154 (238)
T ss_pred CC-----------CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc--
Confidence 42 2344555555554433221110112344555554411 023366777889999988885443
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.+..+.+++..++...+-+.+++.|......|
T Consensus 155 -Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAG 187 (238)
T PRK02227 155 -KDGKSLFDHMDEEELAEFVAEARSHGLMSALAG 187 (238)
T ss_pred -CCCcchHhhCCHHHHHHHHHHHHHcccHhHhcc
Confidence 566777788889999999999998888776655
No 273
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=81.64 E-value=7.7 Score=38.30 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=73.5
Q ss_pred HHHHHHHHcCcccccccccc-hHHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIET-VEELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKV 299 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~L 299 (376)
+..+.+.+.|.|.+..|+=. ++.+.+.=.+ --.+.+...++++.+++..+ ++++.-|=+|..++.++.++.++.|
T Consensus 70 ~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~~~~~~~l 147 (309)
T PF01207_consen 70 EAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEETIEFARIL 147 (309)
T ss_dssp HHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHHHHHHHHH
T ss_pred HHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHHHHHHHHh
Confidence 34455555588888888653 3444443110 01357888888888888643 6888888889998999999999999
Q ss_pred HHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 300 rel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.+.|++.+++. + .++...|-.+...+.+.++........++.|
T Consensus 148 ~~~G~~~i~vH----~---Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 148 EDAGVSAITVH----G---RTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp HHTT--EEEEE----C---S-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred hhcccceEEEe----c---CchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 99999999996 3 2455555446677777777777666666666
No 274
>PRK08185 hypothetical protein; Provisional
Probab=81.57 E-value=43 Score=32.94 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-++ .|.. +..+++.+.+.. .+.|- +.-|+..+.+.+....++|.+++
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~--~~~~-~~~~~~~~a~~~-~vPV~-lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDF--LGDN-FFAYVRERAKRS-PVPFV-IHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhh--ccHH-HHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4678888888889898887777666543222 2334 788888877655 24433 45566557888999999997664
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCCH------H----HHHHHHHHHHHcCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGETP------D----QVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET~------e----e~~e~L~~Lrel~v 304 (376)
.++.+.- |-..+.+...++++.++.. |+.+ .-+. +|..|.. + +..+..+++++.++
T Consensus 96 --M~D~S~l------~~eeNi~~t~~vv~~a~~~---gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~~Tgv 163 (283)
T PRK08185 96 --MIDGSLL------PYEENVALTKEVVELAHKV---GVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGV 163 (283)
T ss_pred --EEeCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHHhhCC
Confidence 3332220 0011233445666666663 4443 4444 4432211 1 56677888899999
Q ss_pred cEEEe
Q 017179 305 DVMTF 309 (376)
Q Consensus 305 d~v~~ 309 (376)
|.+-+
T Consensus 164 D~LAv 168 (283)
T PRK08185 164 DTLAV 168 (283)
T ss_pred CEEEe
Confidence 98777
No 275
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=81.36 E-value=4.2 Score=39.47 Aligned_cols=47 Identities=9% Similarity=0.292 Sum_probs=22.4
Q ss_pred hHHHHHHHHcCcccccccc-------c--chH-HHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNI-------E--TVE-ELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~l-------E--tv~-~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.+.++.|.++|+|.+..++ | +.. .-.+.+. .+.+.++.++.++.+++
T Consensus 27 ~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~-~G~~~~~~~~~~~~ir~ 83 (259)
T PF00290_consen 27 LEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALK-NGFTLEKIFELVKEIRK 83 (259)
T ss_dssp HHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHhc
Confidence 4455555556666654442 1 111 2222334 46666777777777763
No 276
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=81.21 E-value=24 Score=35.42 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCceEE--EeEEEec--CCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 258 KQSLDVLMMAKDYVPAGTLTK--TSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 258 e~~L~vl~~ak~~~p~Gi~tk--t~imvGl--GET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+-.+++++.+++..+..+.+. .+..=.. |.+.+|.++.++.|.+.++|++++..
T Consensus 188 r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 188 RFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 444677888888765434333 2211011 46889999999999999999999853
No 277
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=81.12 E-value=59 Score=32.01 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=100.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+.+.+..++++..+.+.--|+-++...-.+. .|...+..+++.+.+... .+.|. +.-|+..+.+.+....++|-.+
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHM-TGFKTVVAMVKALIEEMNITVPVA-IHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc-CCHHHHHHHHHHHHHHcCCCCcEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 45677788888888888776665554322220 346778888888877542 23333 5556665778888888998665
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCH---------HHHHHHHHHHHHcC
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETP---------DQVVSTMEKVRAAG 303 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~---------ee~~e~L~~Lrel~ 303 (376)
+ ++|.+. .+ ..+.+...++++.||.. |+.+-.- +|. |+.+ -+-.+..+|+++.|
T Consensus 104 V--M~DgS~lp~-------eeNi~~Trevv~~Ah~~---gv~VEaE--lG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tg 169 (285)
T PRK07709 104 V--MIDASHHPF-------EENVETTKKVVEYAHAR---NVSVEAE--LGTVGGQEDDVIAEGVIYADPAECKHLVEATG 169 (285)
T ss_pred E--EEeCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEE--EeccCCccCCcccccccCCCHHHHHHHHHHhC
Confidence 4 445443 21 12345566888888883 6554332 233 2222 36778899999999
Q ss_pred CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 304 vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|.+-+. + +.-|-.-.. .+.=.|++|+++....+...|
T Consensus 170 vD~LAva--i--Gt~HG~Y~~-~p~L~~~~L~~I~~~~~iPLV 207 (285)
T PRK07709 170 IDCLAPA--L--GSVHGPYKG-EPNLGFAEMEQVRDFTGVPLV 207 (285)
T ss_pred CCEEEEe--e--cccccCcCC-CCccCHHHHHHHHHHHCCCEE
Confidence 9986653 1 112211111 111246677777776666443
No 278
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=81.04 E-value=19 Score=36.27 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.|.+.-++.+.++.++|.+-|.+|-.+ .. -++.+.+|++..+ +. |..|+.-+...+....+.|+|-+
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~---~e------~A~A~~~Ik~~~~-vP---LVaDiHf~~rla~~~~~~g~~k~ 99 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPD---ME------AAEALKEIKQRLN-VP---LVADIHFDYRLALEAAECGVDKV 99 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCC---HH------HHHHHHHHHHhCC-CC---EEEEeeccHHHHHHhhhcCcceE
Confidence 466677777888899999998887432 22 2567778887652 21 34444335666677777777766
Q ss_pred cccccchHHHHHhhcCCCCC-HHHHHHHHHHHHHhCCCCceEEEeEEEec----------CCCHHHHH----HHHHHHHH
Q 017179 237 AHNIETVEELQSAVRDHRAN-FKQSLDVLMMAKDYVPAGTLTKTSIMLGC----------GETPDQVV----STMEKVRA 301 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t-~e~~L~vl~~ak~~~p~Gi~tkt~imvGl----------GET~ee~~----e~L~~Lre 301 (376)
-+ +|.... .++.-++++.|++ .|+++..++=-|- +-|.|.++ .+.+.+.+
T Consensus 100 RI------------NPGNig~~~~v~~vVe~Ak~---~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 100 RI------------NPGNIGFKDRVREVVEAAKD---KGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred EE------------CCcccCcHHHHHHHHHHHHH---cCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 43 343333 3457788899998 4677766654332 12223322 33456777
Q ss_pred cCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhh
Q 017179 302 AGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 302 l~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
++++-+-+. .++..+ ..-.+.|+.+|...-+.
T Consensus 165 l~f~~i~iS------~K~Sdv-----~~~v~aYr~lA~~~dyP 196 (361)
T COG0821 165 LGFDDIKVS------VKASDV-----QLMVAAYRLLAKRCDYP 196 (361)
T ss_pred CCCCcEEEE------EEcCCH-----HHHHHHHHHHHHhcCCC
Confidence 787755553 122222 23566677777766553
No 279
>PLN02334 ribulose-phosphate 3-epimerase
Probab=80.86 E-value=11 Score=35.37 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHH-HHHHHHHHhhCCC-cEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHF-AQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~-~elvr~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++..+.+.++++.+.|++.++|=--|....+. ..| .++++.|++.... +.+++.+-+ ..+.++.+.++|+|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~---~~~g~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~gad~ 91 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFVPN---LTIGPPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGASI 91 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcCCc---cccCHHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCCCE
Confidence 44578888999999999999982111110111 000 1677778765211 245545522 145678888999998
Q ss_pred cccccc
Q 017179 236 FAHNIE 241 (376)
Q Consensus 236 i~h~lE 241 (376)
+...+|
T Consensus 92 v~vH~~ 97 (229)
T PLN02334 92 FTFHIE 97 (229)
T ss_pred EEEeec
Confidence 855444
No 280
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=80.78 E-value=13 Score=36.99 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=42.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+++++.++.+.++|++-|.|=|+. +..| .| ..-+...|+.||+.+|++.|
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~v 107 (314)
T cd00384 47 RLSVDSLVEEAEELADLGIRAVILFGIP--EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVV 107 (314)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCcccccCCCChHHHHHHHHHHhCCCcEE
Confidence 4799999999999999999999999983 1222 11 12367899999999998765
No 281
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=80.60 E-value=8.1 Score=38.93 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=48.7
Q ss_pred HHHHHHHHHC--CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 163 TNVAEAIASW--GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 163 ~~~a~al~~~--G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+.++++.+. |++.|+|-+- .+-..++.+.|+.||+.+|+..| +-++.. +.+..+.|.++|+|.+-.+
T Consensus 109 ~er~~~L~~a~~~~d~iviD~A------hGhs~~~i~~ik~ir~~~p~~~v--iaGNV~-T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVA------NGYSEHFVEFVKLVREAFPEHTI--MAGNVV-TGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECC------CCcHHHHHHHHHHHHhhCCCCeE--EEeccc-CHHHHHHHHHcCCCEEEEc
Confidence 3556667666 5899998543 33367899999999999987544 222221 6788999999999988443
No 282
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=80.49 E-value=21 Score=34.75 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred CchhHHHHHHHHHHCC-CcEEEEEeee------CCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHH
Q 017179 158 DPDEPTNVAEAIASWG-LDYVVITSVD------RDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVA 229 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G-~~eIvLTsg~------r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~ 229 (376)
++++..+.|+.+.+.| ++.|-|--+- ...+. ...+.+.++|+++++.. ++.|-+ +.|++....+.++.+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~-~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFG-TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccc-cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 4789999999999998 8988773221 01111 12467889999999864 233332 3444421245567788
Q ss_pred HcCcccccc-c--------ccchHHHH----HhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHH
Q 017179 230 KSGLNVFAH-N--------IETVEELQ----SAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVS 294 (376)
Q Consensus 230 ~aGld~i~h-~--------lEtv~~l~----~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e 294 (376)
++|+|.+.. | +++..... .-+. ........++.+..+++.. +++ ++|. -.|.++..+
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~--~ip-----vi~~GGI~~~~da~~ 251 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV--DIP-----IIGMGGISSAEDAIE 251 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC--CCC-----EEEECCCCCHHHHHH
Confidence 899886532 1 11110000 0011 1111223567777777742 122 3344 368888888
Q ss_pred HHHHHHHcCCcEEEee
Q 017179 295 TMEKVRAAGVDVMTFG 310 (376)
Q Consensus 295 ~L~~Lrel~vd~v~~~ 310 (376)
.|. .|.|.|-++
T Consensus 252 ~l~----aGAd~V~ig 263 (301)
T PRK07259 252 FIM----AGASAVQVG 263 (301)
T ss_pred HHH----cCCCceeEc
Confidence 773 578888886
No 283
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.47 E-value=3 Score=37.88 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD 217 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd 217 (376)
.+-|.+..+++.+.|++.++|||..+-++ +-++++..|++.+|.+.+-+++|-
T Consensus 28 Kkai~~~l~~lleeGleW~litGqLG~E~------WA~Evv~eLk~eyp~ik~avitpF 80 (180)
T COG4474 28 KKAIKKKLEALLEEGLEWVLITGQLGFEL------WAAEVVIELKEEYPHIKLAVITPF 80 (180)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccccHHH------HHHHHHHHHHhhCCCeeEEEEech
Confidence 36677888999999999999999654322 357899999999999999999983
No 284
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=80.34 E-value=14 Score=36.01 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCC------CcccHHHHHHHHHHHHhhCCC-cEEEE-ecCCCC---CChH-HH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDL------ADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR---GNNG-CV 225 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl------~d~g~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~---g~~e-~l 225 (376)
+.+++...+..+.+.|++.|++.+||.+.. +.+.+++-.++|+.|++..+. ..|.+ ..|+-. .+.+ .+
T Consensus 72 ~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~ 151 (281)
T TIGR00677 72 PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDL 151 (281)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHH
Confidence 456888888888999999998888886421 223456677889998876543 55553 444321 1222 23
Q ss_pred HHHH---HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 226 REVA---KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 226 ~~L~---~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
+.|+ ++|+|.+ . .-.-++.+.+.+.++.+++ .|+ +.-||.|+
T Consensus 152 ~~L~~Ki~aGA~f~-i------------TQ~~Fd~~~~~~f~~~~~~---~gi--~~PIi~GI 196 (281)
T TIGR00677 152 KYLKEKVDAGADFI-I------------TQLFYDVDNFLKFVNDCRA---IGI--DCPIVPGI 196 (281)
T ss_pred HHHHHHHHcCCCEe-e------------ccceecHHHHHHHHHHHHH---cCC--CCCEEeec
Confidence 3333 5776633 1 1112455666666666666 232 23456666
No 285
>PLN02540 methylenetetrahydrofolate reductase
Probab=80.32 E-value=23 Score=38.18 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC------cccHHHHHHHHHHHHhhCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLA------DQGSGHFAQTVRKLKELKP 207 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~------d~g~~~~~elvr~Ik~~~p 207 (376)
++.+++...+..+.+.|++.|+...||.+.-. ++++.+-.++|+.|++.+.
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 45678888888899999999988888754221 2456778899999998764
No 286
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.25 E-value=42 Score=32.02 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..+|++.|+...+.|+++++|.=-+.. . .|...-.++|++|.+.. ..+.+ -+-.+ +.+.++.+.++|++.+-.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a-~--~g~~~n~~~i~~i~~~~--~~v~v-GGGIr-s~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKA-I--ENSVENLPVLEKLSEFA--EHIQI-GGGIR-SLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCc-c--cCCcchHHHHHHHHhhc--CcEEE-ecCCC-CHHHHHHHHHCCCCEEEE
Confidence 358899999999999999999733321 1 12334567888887653 22221 11222 678899999999998766
Q ss_pred cccchH--HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE----EEecC---CCHHHHHHHHHHHHHcCCcEEEe
Q 017179 239 NIETVE--ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI----MLGCG---ETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 239 ~lEtv~--~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i----mvGlG---ET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+-++++ ++.+.+ .+ ++..+.+.-++ ++--| .|.-+..+.++.+.+.++..+-+
T Consensus 102 gT~a~~~p~~l~~~-----------------~~-~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 102 SSKVLEDPSFLKFL-----------------KE-IDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred CchhhCCHHHHHHH-----------------HH-hCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 644332 233322 11 11112222221 22112 35667888889999999987766
Q ss_pred ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHhh
Q 017179 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVRS 354 (376)
Q Consensus 310 ~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrs 354 (376)
..--+- ++. .. | .++.+++++..-....++|| =|||
T Consensus 164 tdI~rd---Gt~-~G---~-d~el~~~l~~~~~~pviasG-Gv~s 199 (241)
T PRK14114 164 TEIEKD---GTL-QE---H-DFSLTRKIAIEAEVKVFAAG-GISS 199 (241)
T ss_pred Eeechh---hcC-CC---c-CHHHHHHHHHHCCCCEEEEC-CCCC
Confidence 422222 221 11 1 24445555554455555666 3444
No 287
>PRK06801 hypothetical protein; Provisional
Probab=80.20 E-value=62 Score=31.85 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+.. .+.|- +.-|+..+.+.+..-.++|.+++
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~-~vpV~-lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARH-DIPVV-LNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCcEE
Confidence 3577788888888888876666555533222 34778999998887765 24333 44466546788888889998776
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC------------HHHHHHHHHHHHHc
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET------------PDQVVSTMEKVRAA 302 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET------------~ee~~e~L~~Lrel 302 (376)
-+ +.+.. +-..+.+...++.+.|+.. |+.+ -.+.+ | |+. ..+..+..++.++.
T Consensus 102 m~--D~S~l------~~eeNi~~t~~v~~~a~~~---gv~VE~ElG~v-g-g~e~~v~~~~~~~~~~T~pe~a~~f~~~t 168 (286)
T PRK06801 102 MF--DGSTL------EYEENVRQTREVVKMCHAV---GVSVEAELGAV-G-GDEGGALYGEADSAKFTDPQLARDFVDRT 168 (286)
T ss_pred EE--cCCCC------CHHHHHHHHHHHHHHHHHc---CCeEEeecCcc-c-CCCCCcccCCcccccCCCHHHHHHHHHHH
Confidence 44 22210 0112344455667777773 4433 33332 2 211 11446778888899
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhc
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVA 347 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~ 347 (376)
++|.+-+.-+-. |..-.. .++-.|+.++++....+.-.|+
T Consensus 169 gvD~LAvaiGt~----Hg~y~~-~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 169 GIDALAVAIGNA----HGKYKG-EPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred CcCEEEeccCCC----CCCCCC-CCCCCHHHHHHHHHhcCCCEEE
Confidence 999988842222 222111 1123566666666555544443
No 288
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=79.75 E-value=26 Score=34.48 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.-=|+-++...- ...|.+.+..+++.+.+.. .+.|- +.-|+..+.+.+..-.+.|-+++
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~~~~~~--~~~~~~~~~~~~~~~a~~~-~vPVa-lHLDH~~~~e~i~~ai~~GftSV 100 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQISPSEV--KYMGLEYLAAMVKAAAEEA-SVPVA-LHLDHGKDFEDIKRAIDAGFTSV 100 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEEEHHHH--HHHHHHHHHHHHHHHHHHS-TSEEE-EEEEEE-SHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcchhhh--hhhhHHHHHHHHHHHHHHc-CCCEE-eecccCCCHHHHHHHHHhCcccc
Confidence 35688888899999988877666654321 1235778999999998876 46663 44455446788888888887654
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEec--C-CCH-------HHHHHHHHHHHHcCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGC--G-ETP-------DQVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGl--G-ET~-------ee~~e~L~~Lrel~v 304 (376)
.+|.+..=|. .+.+...++.+.||.. |+.+ --+-|-|. | +++ -+-.+..+|+++.++
T Consensus 101 --M~DgS~l~~e------eNi~~T~~vv~~ah~~---gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 101 --MIDGSALPFE------ENIAITREVVEYAHAY---GVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp --EEE-TTS-HH------HHHHHHHHHHHHHHHT---T-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred --cccCCcCCHH------HHHHHHHHHHHhhhhh---CCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 5665541121 2455677889999984 5544 33333332 1 111 156788999999999
Q ss_pred cEEEeecCCCCCCCCCCCcccCCh-HHHHHHHHHHHHH-hhhhh
Q 017179 305 DVMTFGQYMRPSKRHMPVSEYITP-EAFERYRALGMEM-GFRYV 346 (376)
Q Consensus 305 d~v~~~qY~~P~~~~~~v~~~v~p-e~~~~l~~~a~~~-gf~~~ 346 (376)
|.+-+. + +..|-.-....+| =.|++|+++.... +...|
T Consensus 170 D~LAva--i--Gt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLV 209 (287)
T PF01116_consen 170 DALAVA--I--GTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLV 209 (287)
T ss_dssp SEEEE---S--SSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEE
T ss_pred CEEEEe--c--CccccccCCCCCcccCHHHHHHHHHhcCCCCEE
Confidence 987663 1 1233322221223 2688888888887 66544
No 289
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.64 E-value=50 Score=32.48 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|.+.+..+++.+.+.. .+.|. +.-|+..+.+.+..-.++|-.++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~a~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSY--AGTDYIVAIAEVAARKY-NIPLA-LHLDHHEDLDDIKKKVRAGIRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeE
Confidence 4567788888888888887666655533222 34667888888887765 24443 45566556788888888886643
Q ss_pred cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEec-CC----CHH----HHHHHHHHHHHcCC
Q 017179 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGC-GE----TPD----QVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk--t~imvGl-GE----T~e----e~~e~L~~Lrel~v 304 (376)
.+|.+. .+ ..+.+...++++.||.. |+.+- -+-|-|- ++ +.+ +-.+..+|+++.++
T Consensus 102 --MiDgS~lp~-------eeNi~~T~~vv~~Ah~~---gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tgv 169 (284)
T PRK12737 102 --MIDGSHLSF-------EENIAIVKEVVEFCHRY---DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGI 169 (284)
T ss_pred --EecCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCC
Confidence 455443 21 23455667888899884 55443 3333222 11 111 45788899999999
Q ss_pred cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 305 d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|.+-+. + +.-|-.-.. .+.=.|++|+++....+...|
T Consensus 170 D~LAva-i---Gt~HG~y~~-~p~Ld~~~L~~I~~~~~iPLV 206 (284)
T PRK12737 170 DSLAVA-I---GTAHGLYKG-EPKLDFERLAEIREKVSIPLV 206 (284)
T ss_pred CEEeec-c---CccccccCC-CCcCCHHHHHHHHHHhCCCEE
Confidence 987663 1 122221111 011246777777766665333
No 290
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=79.57 E-value=19 Score=34.99 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=49.9
Q ss_pred hHHHHHHHHc-CcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHH
Q 017179 222 NGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKV 299 (376)
Q Consensus 222 ~e~l~~L~~a-Gld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~L 299 (376)
...++.+.+. |++.+-.+--|.+- ..-+.+++.++++.+.+... | +..+|+|. +.+-+|.++..+..
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~-------~~Lt~~Er~~~~~~~~~~~~-~---~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEG-------FLLSVEERKQIAEIVAEAAK-G---KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhC-C---CCeEEeccCCCCHHHHHHHHHHH
Confidence 4455666666 76665333222221 13457788888887777532 2 45778888 46788888888888
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
++.|.|.+-+
T Consensus 93 ~~~Gad~v~~ 102 (288)
T cd00954 93 EELGYDAISA 102 (288)
T ss_pred HHcCCCEEEE
Confidence 8888887655
No 291
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=79.39 E-value=22 Score=35.13 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=54.2
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCC------CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHR------ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~------~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~ 295 (376)
.+..+.+.++|.|.+..|.-.- .+++.+.. .+.+...++++.+++..+ +++..-+=+|..++..+..+.
T Consensus 78 ~~aa~~~~~~G~d~IelN~gcP---~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~g~~~~~~~~~~~ 152 (319)
T TIGR00737 78 AEAAKINEELGADIIDINMGCP---VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRIGWDDAHINAVEA 152 (319)
T ss_pred HHHHHHHHhCCCCEEEEECCCC---HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEcccCCCcchHHHH
Confidence 3455667788999887776432 12222111 135677788888887542 444444434665666677888
Q ss_pred HHHHHHcCCcEEEee
Q 017179 296 MEKVRAAGVDVMTFG 310 (376)
Q Consensus 296 L~~Lrel~vd~v~~~ 310 (376)
++.|.+.|+|.+++.
T Consensus 153 a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 153 ARIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHHhCCCEEEEE
Confidence 899999999999885
No 292
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=78.84 E-value=7.2 Score=41.36 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
..+++..+.++++.+.|++.|+|++-+. ...+..+.|+.|++.+|+ +.|-+ +... +.+..+.+.++|+|.
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a~g------~~~~~~~~i~~ir~~~~~~~~V~a--GnV~-t~e~a~~li~aGAd~ 308 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSSEG------YSEWQKRTLDWIREKYGDSVKVGA--GNVV-DREGFRYLAEAGADF 308 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCccc------ccHHHHHHHHHHHHhCCCCceEEe--cccc-CHHHHHHHHHcCCCE
Confidence 4556778899999999999999873322 134568999999998874 44433 2211 678889999999999
Q ss_pred ccccc
Q 017179 236 FAHNI 240 (376)
Q Consensus 236 i~h~l 240 (376)
+-.++
T Consensus 309 I~vg~ 313 (502)
T PRK07107 309 VKVGI 313 (502)
T ss_pred EEECC
Confidence 75443
No 293
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=78.83 E-value=69 Score=31.81 Aligned_cols=169 Identities=16% Similarity=0.217 Sum_probs=94.9
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee---CCCCCccc-HHHHHHHHHHHHhhC--CCcEEEEecCCCCCChHHHHHHHHc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQG-SGHFAQTVRKLKELK--PNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~---r~dl~d~g-~~~~~elvr~Ik~~~--p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
++++..+.++.+.+.|++.+.|--.- .++..... .+.+.++++.+++.. | +.+. +.|++....+..+.+.++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iP-v~vK-l~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIP-VAVK-LSPFFSALAHMAKQLDAA 187 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCC-EEEE-cCCCccCHHHHHHHHHHc
Confidence 36788899999989999888774431 22222111 145678889888754 3 4444 566653336677888899
Q ss_pred Ccccccc-c--ccc-hH-HHHHh-----hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHH
Q 017179 232 GLNVFAH-N--IET-VE-ELQSA-----VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKV 299 (376)
Q Consensus 232 Gld~i~h-~--lEt-v~-~l~~~-----vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~L 299 (376)
|+|.+.. | ... ++ +-.+. +. ...-....++.+..+++.. .++ |+|. -.|.+|.++.|.
T Consensus 188 Gadgi~~~nt~~~~~id~~~~~~~~~~glS-G~~~~~~al~~v~~v~~~~--~ip-----Iig~GGI~s~~Da~e~l~-- 257 (325)
T cd04739 188 GADGLVLFNRFYQPDIDLETLEVVPNLLLS-SPAEIRLPLRWIAILSGRV--KAS-----LAASGGVHDAEDVVKYLL-- 257 (325)
T ss_pred CCCeEEEEcCcCCCCccccccceecCCCcC-CccchhHHHHHHHHHHccc--CCC-----EEEECCCCCHHHHHHHHH--
Confidence 9987633 2 110 11 00000 11 1122344566677766532 122 2233 378888888773
Q ss_pred HHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 300 RAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 300 rel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.|.+.|-++.-+- ..+.. +.++-.+.|.++..+.||..+
T Consensus 258 --aGA~~Vqv~ta~~--~~gp~----~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 258 --AGADVVMTTSALL--RHGPD----YIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred --cCCCeeEEehhhh--hcCch----HHHHHHHHHHHHHHHcCCCCH
Confidence 7999888862210 11111 223456667777778888654
No 294
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=78.77 E-value=15 Score=35.33 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=50.5
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+--|.+ . ..-+.+++.++++.+.+.... +..+|+|. +.+.+|.++..+...
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE-----~--~~ls~~Er~~l~~~~~~~~~~----~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGE-----A--PTLTDEERKEVIEAVVEAVAG----RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcc-----c--ccCCHHHHHHHHHHHHHHhCC----CCeEEEecCCccHHHHHHHHHHHH
Confidence 44566666777766543322222 1 134578888888888775321 45578888 567788888888888
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|+|.+-+
T Consensus 90 ~~Gad~v~v 98 (281)
T cd00408 90 EAGADGVLV 98 (281)
T ss_pred HcCCCEEEE
Confidence 888887666
No 295
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=78.75 E-value=33 Score=31.94 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.++++..+.++++.+.|++-+-+|- +. ++ -.+.|+.|++.+|. +.|.+=+ +. +.+.++...++|.+.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~--~~--~~-----~~~~i~~l~~~~~~~~~iGaGT--V~-~~~~~~~a~~aGA~f 86 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL--NS--PD-----PFDSIAALVKALGDRALIGAGT--VL-SPEQVDRLADAGGRL 86 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CC--cc-----HHHHHHHHHHHcCCCcEEeEEe--cC-CHHHHHHHHHcCCCE
Confidence 4789999999999999999888873 11 11 23578888888874 5554422 11 678899999999985
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-- +..+ .++++.++. .|+. ++.| ..|.+|+.+.. +.+.|++.+|
T Consensus 87 ivs--------------p~~~----~~v~~~~~~---~~~~----~~~G-~~t~~E~~~A~----~~Gad~vk~F 131 (206)
T PRK09140 87 IVT--------------PNTD----PEVIRRAVA---LGMV----VMPG-VATPTEAFAAL----RAGAQALKLF 131 (206)
T ss_pred EEC--------------CCCC----HHHHHHHHH---CCCc----EEcc-cCCHHHHHHHH----HcCCCEEEEC
Confidence 522 1211 244455554 2332 3333 57888875544 5788998875
No 296
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=78.65 E-value=20 Score=33.61 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++||....+.+....|++.|.|..++....+- . .++++++++.. ++.+ ..+.-..+.+.++.+.++|+|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v--~---~e~i~~Vk~~~-~~Pv--~vGGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPV--N---PETISLVKKAS-GIPL--IVGGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCC--C---HHHHHHHHHhh-CCCE--EEeCCCCCHHHHHHHHHcCCCE
Confidence 3889999999999999999999996654432221 1 56777777654 2333 2322222789999999999886
Q ss_pred c
Q 017179 236 F 236 (376)
Q Consensus 236 i 236 (376)
+
T Consensus 202 V 202 (205)
T TIGR01769 202 I 202 (205)
T ss_pred E
Confidence 5
No 297
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=78.63 E-value=44 Score=33.50 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=50.2
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEE-ecCCCCC-ChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEA-LVPDFRG-NNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~-l~pd~~g-~~e~l~~L~~aGl 233 (376)
.+++++.+.++.+.+.|.+.|.|.=-..--. ...+.++++.|++.. |++.|.+ ..-++.- ....+. ..++|+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~----P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsla-Ai~aGa 215 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALL----PEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLA-AVEAGA 215 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCC----HHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHH-HHHhCC
Confidence 5789999999999999999887741111111 456889999999876 6777764 2323311 122333 447898
Q ss_pred ccccc
Q 017179 234 NVFAH 238 (376)
Q Consensus 234 d~i~h 238 (376)
+.+..
T Consensus 216 ~~iD~ 220 (337)
T PRK08195 216 TRIDG 220 (337)
T ss_pred CEEEe
Confidence 87644
No 298
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=78.41 E-value=15 Score=34.21 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.++.+.++|++.|++. + ..+++.+++..|++.|.+.+.-..-|.+.++.+.+.|++.+...
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~--------~------~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS--------N------PGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc--------C------HHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEEC
Confidence 678889999999999998764 1 23567778877877777655432227888888888888887766
Q ss_pred cc
Q 017179 240 IE 241 (376)
Q Consensus 240 lE 241 (376)
.|
T Consensus 68 ~E 69 (233)
T PF01136_consen 68 PE 69 (233)
T ss_pred cc
Confidence 55
No 299
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=78.14 E-value=7.9 Score=39.95 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
+-.+.++++.+.|++-|+|-+.+.. ...+.++|+.|++.+|++.| +.++.. +.+....+.++|+|.+..++
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~v--i~g~V~-T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDL--IAGNIV-TKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcE--EEEecC-CHHHHHHHHHcCCCEEEECC
Confidence 4568899999999999998655432 34588999999999987653 222221 57788889999999986554
Q ss_pred cc-hHHHHHhhcCCC-CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 241 ET-VEELQSAVRDHR-ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 241 Et-v~~l~~~vr~r~-~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.. +--..+.+..-+ ..+....++-+.+++ .++++ |.=|=--+.+|+...|. +|-+.|-+|..+
T Consensus 224 g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~---~~vpV---IAdGGI~~~~Di~KALa----lGA~aVmvGs~~ 288 (404)
T PRK06843 224 GPGSICTTRIVAGVGVPQITAICDVYEVCKN---TNICI---IADGGIRFSGDVVKAIA----AGADSVMIGNLF 288 (404)
T ss_pred CCCcCCcceeecCCCCChHHHHHHHHHHHhh---cCCeE---EEeCCCCCHHHHHHHHH----cCCCEEEEccee
Confidence 31 100011111001 122222233333333 12332 11122368888877764 677777777554
No 300
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=78.01 E-value=32 Score=33.64 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=49.9
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+=-|.+ . ..-+.+++.++++.+.+... | +.-+|+|. +.+-+|.++..+...
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE-----~--~~Ls~~Er~~l~~~~~~~~~-g---~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGE-----P--GSLTLEERKQAIENAIDQIA-G---RIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcc-----c--ccCCHHHHHHHHHHHHHHhC-C---CCcEEEECCcchHHHHHHHHHHHH
Confidence 44556666667665422111111 1 23567888888888777432 2 45678888 578888888888888
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
++|+|.+-+.
T Consensus 93 ~~Gad~v~v~ 102 (294)
T TIGR02313 93 EAGADAAMVI 102 (294)
T ss_pred HcCCCEEEEc
Confidence 8888876653
No 301
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.00 E-value=27 Score=33.86 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=77.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCccc---------------HHHHHHHHHHHHhhCCCcEEEE---ecCCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQG---------------SGHFAQTVRKLKELKPNMLIEA---LVPDF 218 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g---------------~~~~~elvr~Ik~~~p~i~Ie~---l~pd~ 218 (376)
.+.+.-.+.++++.+.|++-+=|-=--.|-+.||. .+.+.++++++++. +++.+-+ +-|-|
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~ 104 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVL 104 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHH
Confidence 35788888899999999988876322233344431 23567777777753 3343222 22323
Q ss_pred C-CChHHHHHHHHcCccccccc---ccchHHHHHhhcC---------CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec
Q 017179 219 R-GNNGCVREVAKSGLNVFAHN---IETVEELQSAVRD---------HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC 285 (376)
Q Consensus 219 ~-g~~e~l~~L~~aGld~i~h~---lEtv~~l~~~vr~---------r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl 285 (376)
. |.++.++.++++|+|.+-.. .|-.+++++.++. ...+.+++++.+..... |+.-.-+ ..|.
T Consensus 105 ~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~----gFIY~vS-~~Gv 179 (263)
T CHL00200 105 HYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP----GCIYLVS-TTGV 179 (263)
T ss_pred HhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC----CcEEEEc-CCCC
Confidence 2 45677899999999987553 3444455544321 01233444444433322 4433333 4566
Q ss_pred -CCC---HHHHHHHHHHHHHc
Q 017179 286 -GET---PDQVVSTMEKVRAA 302 (376)
Q Consensus 286 -GET---~ee~~e~L~~Lrel 302 (376)
|.. .+++.+.++.+|+.
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred CCCCccccHHHHHHHHHHHHh
Confidence 543 35566666666663
No 302
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=77.78 E-value=12 Score=37.21 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
+..+.++++.+.|++.|+|...... ..+..++|+.|++..|++.|-+ ++. .+.+..+.+.++|+|.+-.++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~------~~~~~~~i~~ik~~~p~v~Vi~--G~v-~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGH------SVYVIEMIKFIKKKYPNVDVIA--GNV-VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCC------cHHHHHHHHHHHHHCCCceEEE--CCC-CCHHHHHHHHhcCCCEEEECC
Confidence 4567788888999999998654321 2457889999999887555433 322 267888999999999875322
Q ss_pred c-chHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 241 E-TVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 241 E-tv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
- ......+.... ...++.-..++.+.+++. ++++-++ |=--+..|+...|. +|.+.|-+|..|
T Consensus 165 g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~---~vpVIA~---GGI~~~~di~kAla----~GA~~VmiGt~f 229 (325)
T cd00381 165 GPGSICTTRIVTGVGVPQATAVADVAAAARDY---GVPVIAD---GGIRTSGDIVKALA----AGADAVMLGSLL 229 (325)
T ss_pred CCCcCcccceeCCCCCCHHHHHHHHHHHHhhc---CCcEEec---CCCCCHHHHHHHHH----cCCCEEEecchh
Confidence 1 11000011110 112333334444444431 2332210 11246677777663 788887776444
No 303
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=77.61 E-value=20 Score=33.09 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=51.8
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCC------CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHR------ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~------~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~ 295 (376)
.+..+.+.++|.|.+..|+-.-. ..++... .+.+...++++.+++..+ +.+...+=.|..+. ++..+.
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p~---~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~-~~~~~~ 143 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCPS---PKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDE-EETLEL 143 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCH---HHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCc-hHHHHH
Confidence 34667777889888877654311 1122111 256677888888887643 22333222333222 589999
Q ss_pred HHHHHHcCCcEEEee
Q 017179 296 MEKVRAAGVDVMTFG 310 (376)
Q Consensus 296 L~~Lrel~vd~v~~~ 310 (376)
++.+.+.++|.+++.
T Consensus 144 ~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 144 AKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHhCCCEEEEC
Confidence 999999999999885
No 304
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=77.58 E-value=66 Score=33.97 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCchhHHHH-HHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh-----CCCcEEEEecCCCCCChHHHHHHHH
Q 017179 157 PDPDEPTNV-AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL-----KPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 157 l~~eEi~~~-a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~-----~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
.++++.+.. ++.+.+.++.++.++-.+. .+ .|.-...++++..... .....+..+..-.....+.+..|.+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~L--vGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~ 235 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADG-TL--AGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLD 235 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eE--EEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHH
Confidence 455544444 4556778888877753211 11 1222233444433211 1124455554422224788999999
Q ss_pred cCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 231 SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 231 aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+|+|.+.. ++++ +++ +..++.++.+|+.+|+ .-+|+|.+-|.++..+++ +.|+|.|.+|
T Consensus 236 aGVd~i~~--D~a~---------g~~-~~~~~~i~~i~~~~~~-----~~vi~g~~~t~~~~~~l~----~~G~d~i~vg 294 (475)
T TIGR01303 236 AGVDVLVI--DTAH---------GHQ-VKMISAIKAVRALDLG-----VPIVAGNVVSAEGVRDLL----EAGANIIKVG 294 (475)
T ss_pred hCCCEEEE--eCCC---------CCc-HHHHHHHHHHHHHCCC-----CeEEEeccCCHHHHHHHH----HhCCCEEEEC
Confidence 99998643 3322 223 7778899999986654 457889999998876655 6899999887
Q ss_pred cCCCCCCC-CCC-Cc--ccCChHHHHHHHHHHHHHhhhhhccchhHhhhh
Q 017179 311 QYMRPSKR-HMP-VS--EYITPEAFERYRALGMEMGFRYVASGPMVRSSY 356 (376)
Q Consensus 311 qY~~P~~~-~~~-v~--~~v~pe~~~~l~~~a~~~gf~~~~sgp~vrssy 356 (376)
+-|+.. .+. +. ...+....-...+.+.+.|...+|+| =+|+|.
T Consensus 295 --~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG-gi~~~~ 341 (475)
T TIGR01303 295 --VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG-GVRHPR 341 (475)
T ss_pred --CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC-CCCCHH
Confidence 556411 111 11 11222334444455566677778888 556553
No 305
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.58 E-value=77 Score=31.51 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHhhCCCcEEEEecC--CCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCH-HHHHHHHHH
Q 017179 190 QGSGHFAQTVRKLKELKPNMLIEALVP--DFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVLMM 266 (376)
Q Consensus 190 ~g~~~~~elvr~Ik~~~p~i~Ie~l~p--d~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~-e~~L~vl~~ 266 (376)
.|.+.+.+.++.+++.. ++.|-+.+. +...-.+.++.+.++|+|.+..|+-..+. ..... +... +.+.++++.
T Consensus 84 ~g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~--g~~~~~~~~eil~~ 159 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS--GAEVEQRYLDILRA 159 (334)
T ss_pred cCHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc--cccHHHHHHHHHHH
Confidence 46778888888887654 233322221 11001356677788899988887642220 01111 2223 446788888
Q ss_pred HHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 267 AKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 267 ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+++....=+.+|-+. ...++.+..+.+.+.++|.|.+.+
T Consensus 160 v~~~~~iPV~vKl~p------~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 160 VKSAVSIPVAVKLSP------YFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred HHhccCCcEEEEeCC------CchhHHHHHHHHHHcCCCeEEEEC
Confidence 887431102334221 223677888889999999888753
No 306
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=77.43 E-value=54 Score=32.25 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|.+.+..+++.+.+.. .+.|- +.-|+..+.+.+....++|-.++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPV~-lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSY--AGTEYLLAIVSAAAKQY-HHPLA-LHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4567778888888888876666555533222 34677888888887765 34443 55566557888888889996544
Q ss_pred cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEecCCCH----------HHHHHHHHHHHHcC
Q 017179 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGCGETP----------DQVVSTMEKVRAAG 303 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tk--t~imvGlGET~----------ee~~e~L~~Lrel~ 303 (376)
.+|.+. .+ ..+.+...++.+.||.. |+.+- -+-|=|- |.. -+..+..+|+++.|
T Consensus 102 --M~DgS~l~~-------eeNi~~T~~vv~~Ah~~---gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 102 --MIDGSHLPF-------AQNISLVKEVVDFCHRF---DVSVEAELGRLGGQ-EDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred --EeCCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEEecccCc-ccCcccccccccCCCHHHHHHHHHHHC
Confidence 445443 22 12345566888888883 55443 2333222 111 15568889999999
Q ss_pred CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 304 vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|.+-+. + +..|-.-... +.=.|++|+++....+...|
T Consensus 169 vD~LAva-i---Gt~HG~y~~~-p~Ld~~~L~~I~~~~~vPLV 206 (284)
T PRK09195 169 IDSLAVA-I---GTAHGMYKGE-PKLDFDRLENIRQWVNIPLV 206 (284)
T ss_pred cCEEeec-c---CccccccCCC-CcCCHHHHHHHHHHhCCCeE
Confidence 9987663 1 1122211110 11236667666666655333
No 307
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=77.37 E-value=36 Score=35.82 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
+..+.++++.+.|++.+++.+-+. ....+.+.++.|++.+|++.|-+ ++.. +.+....+.++|+|.+..++
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g------~~~~vl~~i~~i~~~~p~~~vi~--g~v~-t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHG------HSEGVLDRVREIKAKYPDVQIIA--GNVA-TAEAARALIEAGADAVKVGI 298 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCC------cchhHHHHHHHHHhhCCCCCEEE--eccC-CHHHHHHHHHcCCCEEEECC
Confidence 457889999999999776654321 13457889999999887655432 3322 68889999999999985532
Q ss_pred -----cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 241 -----ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 241 -----Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imv-GlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++... ...+. ..+++-..++.+.+++ .|+. +|. |=--+..|+...|. +|.+.+-+|..+
T Consensus 299 g~gs~~~~r~-~~~~g--~p~~~~~~~~~~~~~~---~~~~----viadGGi~~~~di~kAla----~GA~~v~~G~~~ 363 (486)
T PRK05567 299 GPGSICTTRI-VAGVG--VPQITAIADAAEAAKK---YGIP----VIADGGIRYSGDIAKALA----AGASAVMLGSML 363 (486)
T ss_pred CCCcccccee-ecCCC--cCHHHHHHHHHHHhcc---CCCe----EEEcCCCCCHHHHHHHHH----hCCCEEEECccc
Confidence 22221 11111 1233444444444443 2333 333 11267788877765 588988888776
No 308
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.31 E-value=25 Score=34.21 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
-+.+++.++++.+.+.... +.-+|+|.|-+-+|.++..+..+++|+|.+-+
T Consensus 50 Ls~eEr~~l~~~~~~~~~~----~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 50 LTPDEYAQVVRAAVEETAG----RVPVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CCHHHHHHHHHHHHHHhCC----CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 4566777777776664322 23456666446777777777777777776655
No 309
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.98 E-value=59 Score=29.67 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++..+.++++.+.|++-|-|+-=+ ++ . .++++.+++..|.+.+..-+. + +.+.++...++|.|.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~----~~--~---~e~~~~~~~~~~~~~~g~gtv-l--~~d~~~~A~~~gAdgv 88 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNS----DQ--P---AELISQLREKLPECIIGTGTI-L--TLEDLEEAIAAGAQFC 88 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC----CC--H---HHHHHHHHHhCCCcEEeEEEE-E--cHHHHHHHHHcCCCEE
Confidence 468999999999999999999887321 11 2 355666666666655543221 1 4577888899999866
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-. +..+ .++++.++. .++ ..++| -.|.+|+.+.. +.+.|++.||
T Consensus 89 ~~--------------p~~~----~~~~~~~~~---~~~----~~i~G-~~t~~e~~~A~----~~Gadyv~~F 132 (187)
T PRK07455 89 FT--------------PHVD----PELIEAAVA---QDI----PIIPG-ALTPTEIVTAW----QAGASCVKVF 132 (187)
T ss_pred EC--------------CCCC----HHHHHHHHH---cCC----CEEcC-cCCHHHHHHHH----HCCCCEEEEC
Confidence 22 1111 122233333 123 35677 67888877666 4899999984
No 310
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=76.81 E-value=66 Score=30.17 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCC------hHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN------NGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~ 229 (376)
..+.+++.+.+++..+.|+.-|++. ..|..+.+..-+ ..++.+...++...|. ...++...
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~------------p~~v~~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVN------------PSYVPLAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeC------------HHHHHHHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 3678999999999999999998873 124445444322 1257777666544442 22345556
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEE
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lrel~vd~v~ 308 (376)
+.|+|-+..-+ + +..+. ...++...+-|..+.+... |+.+|. |+-.| -+++++....+...+.|.|+|-
T Consensus 81 ~~GAdEiDvv~---n--~g~l~--~g~~~~v~~ei~~i~~~~~-g~~lKv--IlE~~~L~~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 81 KYGADEVDMVI---N--IGALK--DGNEEVVYDDIRAVVEACA-GVLLKV--IIETGLLTDEEIRKACEICIDAGADFVK 150 (211)
T ss_pred HcCCCEEEeec---c--hHhhh--CCcHHHHHHHHHHHHHHcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 66776554321 1 22233 3567888888888887654 577777 44442 6789999999999999999998
Q ss_pred eecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhHh
Q 017179 309 FGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMVR 353 (376)
Q Consensus 309 ~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~vr 353 (376)
...-+.| .-.+++....+++.... .....++| =+|
T Consensus 151 TsTGf~~--------~gat~~dv~~m~~~v~~-~v~IKaaG-Gir 185 (211)
T TIGR00126 151 TSTGFGA--------GGATVEDVRLMRNTVGD-TIGVKASG-GVR 185 (211)
T ss_pred eCCCCCC--------CCCCHHHHHHHHHHhcc-CCeEEEeC-CCC
Confidence 7422222 12456677777665443 34556776 344
No 311
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=76.63 E-value=48 Score=29.74 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.++..+.++++.+.|++.|.|=- .++. ...+.+.++.|.+....-.+.+++-+ ..+...+.|+|.+..
T Consensus 11 ~~~~~~~l~~~~~~gv~~v~lR~---k~~~---~~~~~~~a~~l~~~~~~~~~~liin~------~~~la~~~~~dGvHl 78 (180)
T PF02581_consen 11 GDDFLEQLEAALAAGVDLVQLRE---KDLS---DEELLELARRLAELCQKYGVPLIIND------RVDLALELGADGVHL 78 (180)
T ss_dssp TCHHHHHHHHHHHTT-SEEEEE----SSS----HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEE
T ss_pred cchHHHHHHHHHHCCCcEEEEcC---CCCC---ccHHHHHHHHHHHHhhcceEEEEecC------CHHHHHhcCCCEEEe
Confidence 46677888888899999888732 2222 34455555555433211111223322 245556677776655
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCC
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKR 318 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~ 318 (376)
+.+-.+ . ..+++..+.+..+.++ --+.+| +..+.+.++|++.+++.+ |+..
T Consensus 79 ~~~~~~------------~-------~~~r~~~~~~~~ig~S-----~h~~~e----~~~a~~~g~dYv~~gpvf-~T~s 129 (180)
T PF02581_consen 79 GQSDLP------------P-------AEARKLLGPDKIIGAS-----CHSLEE----AREAEELGADYVFLGPVF-PTSS 129 (180)
T ss_dssp BTTSSS------------H-------HHHHHHHTTTSEEEEE-----ESSHHH----HHHHHHCTTSEEEEETSS---SS
T ss_pred cccccc------------h-------HHhhhhcccceEEEee-----cCcHHH----HHHhhhcCCCEEEECCcc-CCCC
Confidence 422111 1 1111111112333333 378887 445568999999999776 3221
Q ss_pred CCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 319 HMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 319 ~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.. . +|-..+.++++....-...+|-|
T Consensus 130 k~~---~-~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 130 KPG---A-PPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp SSS-----TTCHHHHHHHHHHHTSSCEEEES
T ss_pred Ccc---c-cccCHHHHHHHHHhCCCCEEEEc
Confidence 111 1 34445555555554444455544
No 312
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=76.55 E-value=62 Score=31.36 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
.+-++.+++.|++-+++ +|+| .++..++++.+++.. --.|-++.|.. +.+.++.+.+.. +.|=+-+-
T Consensus 109 e~F~~~~~~aGvdgvii-----pDLP---~ee~~~~~~~~~~~g-i~~I~lv~PtT--~~eri~~i~~~a-~gFIY~vS- 175 (263)
T CHL00200 109 NKFIKKISQAGVKGLII-----PDLP---YEESDYLISVCNLYN-IELILLIAPTS--SKSRIQKIARAA-PGCIYLVS- 175 (263)
T ss_pred HHHHHHHHHcCCeEEEe-----cCCC---HHHHHHHHHHHHHcC-CCEEEEECCCC--CHHHHHHHHHhC-CCcEEEEc-
Confidence 34466667889988876 5776 456667777776642 23555667765 567777776653 21211110
Q ss_pred hHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 243 VEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 243 v~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET-~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
..- +.+ +..-.++..+.++.+|+. +..-+++|||-+ .|++. .+.+.|.|.+-+|-.+
T Consensus 176 ~~G----vTG~~~~~~~~~~~~i~~ir~~------t~~Pi~vGFGI~~~e~~~----~~~~~GADGvVVGSal 234 (263)
T CHL00200 176 TTG----VTGLKTELDKKLKKLIETIKKM------TNKPIILGFGISTSEQIK----QIKGWNINGIVIGSAC 234 (263)
T ss_pred CCC----CCCCCccccHHHHHHHHHHHHh------cCCCEEEECCcCCHHHHH----HHHhcCCCEEEECHHH
Confidence 000 110 011124455666666662 456688999888 55543 3677889998888543
No 313
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=76.47 E-value=26 Score=33.88 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=52.6
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
...++.+.+.|++.+-.+-.|-+ . ..-+.+++.++++.+.+... | +..+++|. ..+-+|.++..+..+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE-----~--~~Ls~~Er~~~~~~~~~~~~-~---~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGE-----S--PTLSHEEHKKVIEFVVDLVN-G---RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcc-----c--ccCCHHHHHHHHHHHHHHhC-C---CCeEEEeCCCccHHHHHHHHHHHH
Confidence 44566667777776533222222 1 13567888888888887532 2 45688888 468889999999999
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
+.|+|.+-+.
T Consensus 91 ~~Gad~v~v~ 100 (285)
T TIGR00674 91 DVGADGFLVV 100 (285)
T ss_pred HcCCCEEEEc
Confidence 9999876663
No 314
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=76.22 E-value=38 Score=36.31 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=84.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC--CC-------CCChHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP--DF-------RGNNGCVR 226 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p--d~-------~g~~e~l~ 226 (376)
..+..+|++.|+...+.|+++++|.=-+..--...+...+.++|++|.+.. .+.+.+=-+ ++ ....|.++
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~ 341 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVAS 341 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHH
Confidence 467788999999999999999998743321000111344788998887743 223322111 11 00137799
Q ss_pred HHHHcCcccccccccch---HHHHHhhcCCCCCHHHHHHHHHHHHHhCCCC-ceEEEe----------------------
Q 017179 227 EVAKSGLNVFAHNIETV---EELQSAVRDHRANFKQSLDVLMMAKDYVPAG-TLTKTS---------------------- 280 (376)
Q Consensus 227 ~L~~aGld~i~h~lEtv---~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~G-i~tkt~---------------------- 280 (376)
.+.++|+|.+..|-..+ ++.|..= ...+ -+.++.+.+.++.. +.+..+
T Consensus 342 ~~l~~GadkV~i~s~Av~~~~~~~~~~--~~~~----p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~ 415 (538)
T PLN02617 342 EYFRSGADKISIGSDAVYAAEEYIASG--VKTG----KTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNP 415 (538)
T ss_pred HHHHcCCCEEEEChHHHhChhhhhccc--cccC----HHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccccc
Confidence 99999999998873322 2222110 1111 24455555544332 222222
Q ss_pred -----------EEE--ecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 281 -----------IML--GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 281 -----------imv--GlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+ |.-.|.-+.++.++.+.++++..+-+.
T Consensus 416 ~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 416 GPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred CcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 111 112357788999999999999877774
No 315
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=76.07 E-value=68 Score=30.87 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=74.5
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcc-ccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN-VFAHNIE 241 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld-~i~h~lE 241 (376)
.+-++.+++.|++.+++ +|++ .++..++++.+++... -.+-++.|.- +.+.++.+.+.... +|-....
T Consensus 105 e~f~~~~~~aGvdgvii-----pDlp---~ee~~~~~~~~~~~gl-~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~ 173 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLV-----ADLP---LEESGDLVEAAKKHGV-KPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRA 173 (256)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---hHHHHHHHHHHHHCCC-cEEEEECCCC--CHHHHHHHHHhCCCCEEEEECC
Confidence 45577788999988876 4666 4667788888877532 2344566665 56677766665321 1111111
Q ss_pred chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 242 TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 242 tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET-~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.+- - . +..-..+..+.++.+++.. ..-+++|+|-+ .+++. .+.+.|.|.+-+|..+
T Consensus 174 G~T---G-~--~~~~~~~~~~~i~~lr~~~------~~pi~vgfGI~~~e~~~----~~~~~GADgvVvGSai 230 (256)
T TIGR00262 174 GVT---G-A--RNRAASALNELVKRLKAYS------AKPVLVGFGISKPEQVK----QAIDAGADGVIVGSAI 230 (256)
T ss_pred CCC---C-C--cccCChhHHHHHHHHHhhc------CCCEEEeCCCCCHHHHH----HHHHcCCCEEEECHHH
Confidence 110 0 0 0111244677777777732 23599999886 66654 4678899998888554
No 316
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=75.83 E-value=31 Score=33.61 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=46.5
Q ss_pred hHHHHHHHH-cCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHH
Q 017179 222 NGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKV 299 (376)
Q Consensus 222 ~e~l~~L~~-aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~L 299 (376)
.+.++.+.+ .|++.+-.+--|.+ . ..-+.+++.++++.+.+.... +..+|+|.| .+-+|.++..+..
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE-----~--~~Ls~eEr~~~~~~~~~~~~~----~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGE-----A--FLLSTEEKKQVLEIVAEEAKG----KVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccc-----c--ccCCHHHHHHHHHHHHHHhCC----CCCEEecCCCCCHHHHHHHHHHH
Confidence 445566666 66665433211212 0 124567777777777775432 345777774 5777778888888
Q ss_pred HHcCCcEEEe
Q 017179 300 RAAGVDVMTF 309 (376)
Q Consensus 300 rel~vd~v~~ 309 (376)
++.|+|.+-+
T Consensus 96 ~~~Gad~v~v 105 (293)
T PRK04147 96 TELGYDAISA 105 (293)
T ss_pred HHcCCCEEEE
Confidence 8888876655
No 317
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=75.55 E-value=56 Score=31.47 Aligned_cols=163 Identities=13% Similarity=0.203 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
.-+.|.+.|+...+.|++.++|.=-+.. ..++.. =.++|++|.+..+ ..|++--+ .+ +.+.++.|.++|++++-
T Consensus 29 y~~~P~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~-n~~~i~~i~~~~~-~~vQvGGG-IR-s~~~v~~ll~~G~~rVi 102 (241)
T COG0106 29 YSDDPLEVAKKWSDQGAEWLHLVDLDGA--KAGGPR-NLEAIKEILEATD-VPVQVGGG-IR-SLEDVEALLDAGVARVI 102 (241)
T ss_pred ecCCHHHHHHHHHHcCCcEEEEeecccc--ccCCcc-cHHHHHHHHHhCC-CCEEeeCC-cC-CHHHHHHHHHCCCCEEE
Confidence 3467899999999999999998632211 112222 2456777776553 44443222 22 78999999999999886
Q ss_pred ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeE------EEec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSI------MLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 238 h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~i------mvGl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+-=. +. ++ +.++.+.+.+|..+.+.-+. +=|- -.|.-+..+.++.+.+.++..+-+.
T Consensus 103 iGt~a-------v~----~p----~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T 167 (241)
T COG0106 103 IGTAA-------VK----NP----DLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT 167 (241)
T ss_pred Eecce-------ec----CH----HHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE
Confidence 64111 11 11 22222223333222222221 2233 2344478889999999999887775
Q ss_pred cCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 311 QYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 311 qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.-.+- ++ ..---++.+++++.......++||
T Consensus 168 dI~~D---Gt-----l~G~n~~l~~~l~~~~~ipviaSG 198 (241)
T COG0106 168 DISRD---GT-----LSGPNVDLVKELAEAVDIPVIASG 198 (241)
T ss_pred ecccc---cc-----cCCCCHHHHHHHHHHhCcCEEEec
Confidence 33333 22 111135566667666666666776
No 318
>PRK03739 2-isopropylmalate synthase; Validated
Probab=75.31 E-value=71 Score=34.38 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=80.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CCCcEEEEecCCCCCC-hHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KPNMLIEALVPDFRGN-NGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p~i~Ie~l~pd~~g~-~e~l~~L~~a 231 (376)
.++.+|=+++++.+.+.|+++|-+.- |...+. + .+.++.|.+. .++..+.++.+...++ +..++.++.+
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~Gf---P~~s~~--e--~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVGF---PSASQT--D--FDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGA 120 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC---CCcChH--H--HHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCC
Confidence 48999999999999999999998752 333321 1 3566777444 2467888888865432 2233334344
Q ss_pred CcccccccccchH-HHHHhhcCCCCCHHHHHHHH----HHHHHhCCCCc-eEEEeEEEec-CC----CH-HHHHHHHHHH
Q 017179 232 GLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVL----MMAKDYVPAGT-LTKTSIMLGC-GE----TP-DQVVSTMEKV 299 (376)
Q Consensus 232 Gld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl----~~ak~~~p~Gi-~tkt~imvGl-GE----T~-ee~~e~L~~L 299 (376)
+...+...+-+++ -+..+++ .+.++.++.+ +.+++. |. ...+.+-+=| +| ++ +-+++.++.+
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~---~t~ee~l~~~~~~v~~a~~~---~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a 194 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFG---KDRDGIKAIAVDGARLVKEL---AAKYPETEWRFEYSPESFTGTELDFALEVCDAV 194 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh---cccccCceeEEEEecccCCCCCHHHHHHHHHHH
Confidence 4445666677777 4444444 4666665554 455553 22 1234456666 77 55 5555666776
Q ss_pred HH
Q 017179 300 RA 301 (376)
Q Consensus 300 re 301 (376)
.+
T Consensus 195 ~~ 196 (552)
T PRK03739 195 ID 196 (552)
T ss_pred HH
Confidence 65
No 319
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=75.11 E-value=88 Score=30.74 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=100.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-.+...-.+ .|...+..+++.+.+.. .+.|- +.-|+..+.+.+.+-.++|-.++
T Consensus 24 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~--~~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSV 99 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSPVILAGTPGTFKH--AGTEYIVALCSAASTTY-NMPLA-LHLDHHESLDDIRQKVHAGVRSA 99 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCccHHhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4567788888888888886666555433222 24667888888887765 24443 45566557888988889986544
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCH----------HHHHHHHHHHHHcCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETP----------DQVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~----------ee~~e~L~~Lrel~v 304 (376)
++|.+.--| ..+.+...++.+.||.. |+.+-. +-|=|- |.. -+-.+..+|+++.|+
T Consensus 100 --M~DgS~lp~------eeNi~~T~~vv~~Ah~~---gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~Tgv 167 (282)
T TIGR01858 100 --MIDGSHFPF------AQNVKLVKEVVDFCHRQ---DCSVEAELGRLGGV-EDDLSVDEEDALYTDPQEAKEFVEATGV 167 (282)
T ss_pred --eecCCCCCH------HHHHHHHHHHHHHHHHc---CCeEEEEEEecCCc-cCCCccccchhccCCHHHHHHHHHHHCc
Confidence 455443111 12455667888888884 554433 333222 111 134688889999999
Q ss_pred cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 305 d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|.+-+. + +.-|-.-.. .+.=.|++|+++....+...|
T Consensus 168 D~LAva-i---Gt~HG~yk~-~p~Ldf~~L~~I~~~~~iPLV 204 (282)
T TIGR01858 168 DSLAVA-I---GTAHGLYKK-TPKLDFDRLAEIREVVDVPLV 204 (282)
T ss_pred CEEecc-c---CccccCcCC-CCccCHHHHHHHHHHhCCCeE
Confidence 987663 1 122221111 011247777777666665333
No 320
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=75.08 E-value=29 Score=32.39 Aligned_cols=130 Identities=9% Similarity=0.088 Sum_probs=73.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh---CC-CcEEEEec-CCCC---CChHHHHH--
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL---KP-NMLIEALV-PDFR---GNNGCVRE-- 227 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~---~p-~i~Ie~l~-pd~~---g~~e~l~~-- 227 (376)
+.+.....++++.+.|++.|.++--..+ .. ...+.+.++++.+. .. .+.|+... +... .+.+.+..
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~---~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS-EE---EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC-ch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHH
Confidence 3455566678888999998866543322 11 23444555555432 21 13444322 0000 02233333
Q ss_pred --HHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-cC-CCHHHHHHHHHHHHHcC
Q 017179 228 --VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CG-ETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 228 --L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG-lG-ET~ee~~e~L~~Lrel~ 303 (376)
..++|+|.+..+..+ -++.++.+.+..+ +++ ++.| .+ .|.+++++.+..+.+.|
T Consensus 150 ~~a~~~GaD~Ik~~~~~-----------------~~~~~~~i~~~~~--~pv---v~~GG~~~~~~~~~l~~~~~~~~~G 207 (235)
T cd00958 150 RIGAELGADIVKTKYTG-----------------DAESFKEVVEGCP--VPV---VIAGGPKKDSEEEFLKMVYDAMEAG 207 (235)
T ss_pred HHHHHHCCCEEEecCCC-----------------CHHHHHHHHhcCC--CCE---EEeCCCCCCCHHHHHHHHHHHHHcC
Confidence 667788877653110 2455666665332 333 3445 33 58999999999999999
Q ss_pred CcEEEeecCC
Q 017179 304 VDVMTFGQYM 313 (376)
Q Consensus 304 vd~v~~~qY~ 313 (376)
++.+.++..+
T Consensus 208 a~gv~vg~~i 217 (235)
T cd00958 208 AAGVAVGRNI 217 (235)
T ss_pred CcEEEechhh
Confidence 9999988553
No 321
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=75.08 E-value=55 Score=31.31 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc-ccch
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN-IETV 243 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~-lEtv 243 (376)
.++.+...|++.|+|-.-+... | ...+..+++.+....-...|++ |.. +...++.+.++|++.+-.- +++.
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~--~--~~~~~~~~~a~~~~g~~~~VRv--~~~--~~~~i~~~Ld~Ga~gIivP~v~s~ 96 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPN--D--VRTILSQLQALAPYPSSPVVRP--AIG--DPVLIKQLLDIGAQTLLVPMIETA 96 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCC--C--HHHHHHHHHHHHhcCCCcEEEC--CCC--CHHHHHHHhCCCCCEEEecCcCCH
Confidence 4666788999999986554431 2 5556667766644222234443 333 4567899999999865332 5555
Q ss_pred HHHHH---hhc--C---CCCC-----HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 244 EELQS---AVR--D---HRAN-----FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 244 ~~l~~---~vr--~---r~~t-----~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+++.. .++ | |+.. ...|-..-+.+..... .+..-. +-||.+-+.+.=+-+.--++|.+.||
T Consensus 97 e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~---~~~vi~---~IEt~~av~n~~eI~a~~gvd~l~~G 170 (249)
T TIGR02311 97 EQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADE---EICVLL---QVETREALDNLEEIAAVEGVDGVFIG 170 (249)
T ss_pred HHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhh---ceEEEE---EecCHHHHHHHHHHHCCCCCcEEEEC
Confidence 43332 222 1 1101 0001001112221100 111112 24999888776666655579999998
Q ss_pred cC
Q 017179 311 QY 312 (376)
Q Consensus 311 qY 312 (376)
.+
T Consensus 171 ~~ 172 (249)
T TIGR02311 171 PA 172 (249)
T ss_pred HH
Confidence 44
No 322
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=75.01 E-value=33 Score=34.03 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHHHHHcCcccccccccc-hHHHHHhhcCCC----CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIET-VEELQSAVRDHR----ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTME 297 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEt-v~~l~~~vr~r~----~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~ 297 (376)
+..+.+.++|.|.+..|+-. ++.+.+. . .+ .+.+...++++.+++..+.+++++.-+=+|+ ++.++..+.++
T Consensus 79 ~aA~~~~~~g~d~IdiN~GCP~~~v~~~-g-~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~-~~~~~~~~~a~ 155 (312)
T PRK10550 79 ENAARAVELGSWGVDLNCGCPSKTVNGS-G-GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW-DSGERKFEIAD 155 (312)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHhcC-C-CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC-CCchHHHHHHH
Confidence 44567778899988888654 3344332 1 11 3567788888888887653344433332354 33455789999
Q ss_pred HHHHcCCcEEEee
Q 017179 298 KVRAAGVDVMTFG 310 (376)
Q Consensus 298 ~Lrel~vd~v~~~ 310 (376)
.+.+.|+|.+++.
T Consensus 156 ~l~~~Gvd~i~Vh 168 (312)
T PRK10550 156 AVQQAGATELVVH 168 (312)
T ss_pred HHHhcCCCEEEEC
Confidence 9999999999985
No 323
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=74.80 E-value=31 Score=29.88 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
+.++++.+.+.+-|+|+|-+... .+.+.++++.|++..+. .+.++.+-.. ..+..+.++++|+|.+=|
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~~-----~~~~~~~~~~L~~~g~~-~i~vivGG~~-~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGGH-----LTLVPALRKELDKLGRP-DILVVVGGVI-PPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhhh-----HHHHHHHHHHHHhcCCC-CCEEEEeCCC-ChHhHHHHHHCCCCEEEC
Confidence 44556668899999998764321 45577888888886542 2333443221 245578899999987644
No 324
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=74.70 E-value=44 Score=31.46 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 159 PDEPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 159 ~eEi~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
.+++.+.++++.+.| ++-|.|= ..++. ...+.++.++|++......+.+++-| .++...+.|.|.+.
T Consensus 25 ~~~~~~~l~~al~~G~v~~vQlR---~K~l~---~~~~~~~a~~l~~l~~~~gv~liINd------~~dlA~~~~adGVH 92 (221)
T PRK06512 25 GAELAKLLRAALQGGDVASVILP---QYGLD---EATFQKQAEKLVPVIQEAGAAALIAG------DSRIAGRVKADGLH 92 (221)
T ss_pred cccHHHHHHHHHcCCCccEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCEEEEeC------HHHHHHHhCCCEEE
Confidence 356778888888999 6877763 12333 34456666666543221223344433 25555566777665
Q ss_pred ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 238 h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
.+.+-. -+..+++.. ..+.++|. ..+.++..+ ..+.+.|++.||+++
T Consensus 93 Lg~~d~-------------------~~~~~r~~~------~~~~iiG~s~~~s~~~a~~----A~~~gaDYv~~Gpv~ 141 (221)
T PRK06512 93 IEGNLA-------------------ALAEAIEKH------APKMIVGFGNLRDRHGAME----IGELRPDYLFFGKLG 141 (221)
T ss_pred ECcccc-------------------CHHHHHHhc------CCCCEEEecCCCCHHHHHH----hhhcCCCEEEECCCC
Confidence 432210 022333321 13457887 456666554 346899999999886
No 325
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=74.57 E-value=80 Score=30.01 Aligned_cols=116 Identities=16% Similarity=0.276 Sum_probs=69.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|..-+.+.++++.+.|++.+++---|.--.|. ..--..++++|++... -+.+++.+-+ ....+..+.++|+|.
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFVPN--iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~ 87 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFVPN--ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADI 87 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC--cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCE
Confidence 466677788889999999999986555332232 1111356677766421 1455554432 246789999999999
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHH
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTM 296 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L 296 (376)
+....|..+.+ .++|..+|+ .| +++++.+--+-..+.+...|
T Consensus 88 It~H~E~~~~~--------------~r~i~~Ik~---~G--~kaGv~lnP~Tp~~~i~~~l 129 (220)
T COG0036 88 ITFHAEATEHI--------------HRTIQLIKE---LG--VKAGLVLNPATPLEALEPVL 129 (220)
T ss_pred EEEEeccCcCH--------------HHHHHHHHH---cC--CeEEEEECCCCCHHHHHHHH
Confidence 99888832211 234445555 24 56777665544444443333
No 326
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=74.55 E-value=9 Score=36.73 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCCcCCCCCCC-CCCCCCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 017179 141 RGCRFCNVKTS-RAPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 219 (376)
Q Consensus 141 ~~C~FC~v~~~-r~~~~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~ 219 (376)
..|.|+.+-++ +.+-.++ +++-|+++.++|..||+|||.|+|.... |.+ .++++.+++.. ++.|-++-+ .
T Consensus 138 ~~~~~~v~~~gGr~~t~~d---~~~Wa~~~e~~GAGEIlLtsmD~DGtk~-GyD--l~l~~~v~~~v-~iPvIASGG--a 208 (256)
T COG0107 138 ENGWYEVFTHGGREDTGLD---AVEWAKEVEELGAGEILLTSMDRDGTKA-GYD--LELTRAVREAV-NIPVIASGG--A 208 (256)
T ss_pred CCCcEEEEecCCCcCCCcC---HHHHHHHHHHcCCceEEEeeeccccccc-CcC--HHHHHHHHHhC-CCCEEecCC--C
Confidence 47777766654 3222244 5667888889999999999999876543 332 67788887754 233322222 2
Q ss_pred CChHHHHHHH
Q 017179 220 GNNGCVREVA 229 (376)
Q Consensus 220 g~~e~l~~L~ 229 (376)
|+.+.+.+..
T Consensus 209 G~~ehf~eaf 218 (256)
T COG0107 209 GKPEHFVEAF 218 (256)
T ss_pred CcHHHHHHHH
Confidence 3555544444
No 327
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=74.49 E-value=52 Score=30.08 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=49.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.|+....+.++++.+.|++.|.|--.|....+. .....+.+++|++..+ ...+.+.+-+ ..+.++.+.++|+|.
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~v~d---~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGHFVPN--LTIGPPVVEAIRKVTKLPLDVHLMVEN---PDRYVPDFAKAGADI 87 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCC--cCcCHHHHHHHHhcCCCcEEEEeeeCC---HHHHHHHHHHcCCCE
Confidence 566788889999999999999983222221111 1123567788876554 2345555533 244577788999998
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+..
T Consensus 88 v~v 90 (220)
T PRK05581 88 ITF 90 (220)
T ss_pred EEE
Confidence 544
No 328
>PRK12999 pyruvate carboxylase; Reviewed
Probab=74.49 E-value=42 Score=39.33 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCC--cccHHHHHHHHHHHHhhCCCcEEEEecCC--CCC--------C
Q 017179 156 PPDPDEPTNVAEAIASW--GLDYVVITSVDRDDLA--DQGSGHFAQTVRKLKELKPNMLIEALVPD--FRG--------N 221 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~--d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~~g--------~ 221 (376)
.++.++.+.+|+++.+. |+..|-+.||..-|.. -.+.+ =.+.++.|++..|++.+..|.-. ..| .
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~-p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKED-PWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCC-HHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 37899999999999999 9999999887532211 00011 13578888888898888876531 101 2
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C---------CCHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G---------ETPDQ 291 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-G---------ET~ee 291 (376)
.+.++..+++|+|++...... +. .+.....++.+++. |.. ..+.+++ | -+.+-
T Consensus 630 ~~~i~~a~~~Gid~~rifd~l-nd-----------~~~~~~~i~~vk~~---g~~--~~~~i~ytg~~~d~~~~~~~~~~ 692 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSL-NW-----------VENMRVAIDAVRET---GKI--AEAAICYTGDILDPARAKYDLDY 692 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccC-Ch-----------HHHHHHHHHHHHHc---CCe--EEEEEEEEecCCCCCCCCCCHHH
Confidence 445778889999987664211 11 33344566777763 432 2233333 2 37788
Q ss_pred HHHHHHHHHHcCCcEEEee
Q 017179 292 VVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 292 ~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+..+.+.+.|++.+.|.
T Consensus 693 ~~~~a~~l~~~Ga~~i~ik 711 (1146)
T PRK12999 693 YVDLAKELEKAGAHILAIK 711 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 8888888999999888773
No 329
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.36 E-value=68 Score=30.40 Aligned_cols=128 Identities=12% Similarity=0.204 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+|++.|+.+.+.|+++++|.=-+.. .+ ...-.++|++|.+... .+.+. +-.+ +.+.++.+.++|++.+-.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a--~~--~~~n~~~i~~i~~~~~~~v~vG---GGIr-s~e~~~~~l~~Ga~kvvi 101 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAA--EG--VGNNEMYIKEISKIGFDWIQVG---GGIR-DIEKAKRLLSLDVNALVF 101 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCc--CC--CcchHHHHHHHHhhCCCCEEEe---CCcC-CHHHHHHHHHCCCCEEEE
Confidence 47899999999999999999743321 11 1222488888877321 12222 1111 678899999999998876
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhC-CCCceEEEeE-----EE--ecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYV-PAGTLTKTSI-----ML--GCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~-p~Gi~tkt~i-----mv--GlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+-++.+. .+.++.+.+.+ +.-+.+.-++ ++ |--|+..+..+.++.+.++++..+-+.
T Consensus 102 gt~a~~~---------------p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~t 166 (232)
T PRK13586 102 STIVFTN---------------FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFT 166 (232)
T ss_pred CchhhCC---------------HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEe
Confidence 6443220 12222222222 1112222222 22 122455577888889999998766553
No 330
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=74.18 E-value=35 Score=33.26 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
-+.+++.++++.+.+... | +..+|+|. +-+-+|.++..+...++|+|.+-+
T Consensus 51 Lt~eEr~~~~~~~~~~~~-~---~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAK-D---QIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CCHHHHHHHHHHHHHHhC-C---CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456777777777766432 2 34577777 357777777777777777775544
No 331
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.93 E-value=62 Score=31.05 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=75.2
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc-cccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIET 242 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h-~lEt 242 (376)
..++.+...|++.|+|-.-+.+ + +.+.+.++++.+...--...|++ |.. +...++++.++|.+.+-. ++++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~-~---~~~~~~~~~~a~~~~g~~~~VRv--p~~--~~~~i~r~LD~Ga~gIivP~v~t 95 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAP-N---DVLTFIPQLMALKGSASAPVVRP--PWN--EPVIIKRLLDIGFYNFLIPFVES 95 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCC-C---CHHHHHHHHHHHhhcCCCcEEEC--CCC--CHHHHHHHhcCCCCEEEecCcCC
Confidence 3566778899999998665432 1 25567778887765322234444 333 568899999999986522 3677
Q ss_pred hHHHHHhh---c--C---CCCCH----HHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 243 VEELQSAV---R--D---HRANF----KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 243 v~~l~~~v---r--~---r~~t~----e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.++....+ + | |+... ..|-..-+.+...... +..-.| -||.+-+.+.=+.+.--++|.+.||
T Consensus 96 aeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~---~~vi~~---IEt~~av~n~~eI~av~gvd~l~iG 169 (249)
T TIGR03239 96 AEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDN---ITVLVQ---IESQKGVDNVDEIAAVDGVDGIFVG 169 (249)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccc---cEEEEE---ECCHHHHHhHHHHhCCCCCCEEEEC
Confidence 66544433 1 1 11110 0110111222221111 222222 4999888766555554469999998
Q ss_pred cC
Q 017179 311 QY 312 (376)
Q Consensus 311 qY 312 (376)
.+
T Consensus 170 ~~ 171 (249)
T TIGR03239 170 PS 171 (249)
T ss_pred hH
Confidence 43
No 332
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=73.88 E-value=12 Score=35.04 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHH-HHHcCccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE-VAKSGLNVFA 237 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~-L~~aGld~i~ 237 (376)
..++.+.++.+.++|++++++++.++.... .| ...++++++++.. ++.|-+ .+... +.+.+.. +...|++.+.
T Consensus 152 ~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~-~g--~~~~~~~~i~~~~-~ipvia-~GGi~-s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 152 GRDPVEWAREAEQLGAGEILLNSIDRDGTM-KG--YDLELIKTVSDAV-SIPVIA-LGGAG-SLDDLVEVALEAGASAVA 225 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCCCccCCc-CC--CCHHHHHHHHhhC-CCCEEE-ECCCC-CHHHHHHHHHHcCCCEEE
Confidence 455678889999999999999987654321 12 2467888887764 244432 23332 5667777 8888988764
Q ss_pred c
Q 017179 238 H 238 (376)
Q Consensus 238 h 238 (376)
.
T Consensus 226 v 226 (232)
T TIGR03572 226 A 226 (232)
T ss_pred E
Confidence 4
No 333
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=73.87 E-value=49 Score=31.61 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
..+.+.|......+++.|+++|.|++-.- ++....+.+...|...+..+..+.|. -|-+- ..+..+.+.++=-+.
T Consensus 56 gi~~dTP~~aL~klk~~gy~eviiQ~lhi--IpG~EyEklvr~V~~~~~dF~~lkig--~PlLy-~k~DYe~~v~aik~~ 130 (265)
T COG4822 56 GIDFDTPIQALNKLKDQGYEEVIIQPLHI--IPGIEYEKLVREVNKYSNDFKRLKIG--RPLLY-YKNDYEICVEAIKDQ 130 (265)
T ss_pred CcccCCHHHHHHHHHHccchheeeeeeee--cCchHHHHHHHHHHHHhhhhheeecC--Cceee-chhhHHHHHHHHHHh
Confidence 47788899999999999999999998752 22211334444444444444333332 22110 112233333332222
Q ss_pred ccc-cccchHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 236 FAH-NIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 236 i~h-~lEtv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++- +- ++..=.|+. -.+........|+..-.. .|+ +++.|+--|.--++-..++.|++.++..|++-++|
T Consensus 131 ~ppl~k---~e~~vlmgHGt~h~s~~~YacLd~~~~~--~~f---~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlM 202 (265)
T COG4822 131 IPPLNK---DEILVLMGHGTDHHSNAAYACLDHVLDE--YGF---DNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLM 202 (265)
T ss_pred cCCcCc---CeEEEEEecCCCccHHHHHHHHHHHHHh--cCC---CceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeE
Confidence 321 10 111222441 123334445555555443 232 34566666888899999999999999999887665
Q ss_pred CCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh--cc----chhHhhhhhhcHHHHHHHHHh
Q 017179 314 RPSKRHMPVSEYITPEAFERYRALGMEMGFRYV--AS----GPMVRSSYKAGEFYIKSMIES 369 (376)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~--~s----gp~vrssy~a~~~~~~~~~~~ 369 (376)
--...|.. .-...+.-+.|+.+-.+-||..- .+ -|..|+-|-+ .|+..+.+
T Consensus 203 lvAG~Ha~--nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~ifi~---Hik~aie~ 259 (265)
T COG4822 203 LVAGDHAK--NDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAIFID---HIKDAIER 259 (265)
T ss_pred Eeechhhh--hhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHHHHH---HHHHHHhh
Confidence 22222322 11223456889999999999763 23 3566666544 24444443
No 334
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.85 E-value=41 Score=33.16 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=61.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lr 300 (376)
.+.++.+.++|++.+-.+=-|-+ . ..-+.+++.++++.+.+... | +..+|+|.| .+-+|.++..+...
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE-~------~~Lt~eEr~~v~~~~~~~~~-g---rvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGE-C------ATLTWEEKQAFVATVVETVA-G---RVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred HHHHHHHHHcCCCEEEECccccc-c------hhCCHHHHHHHHHHHHHHhC-C---CCCEEEEeccCCHHHHHHHHHHHH
Confidence 34456666677665432211111 0 13467888888888887542 2 456888984 68889999999999
Q ss_pred HcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHH
Q 017179 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEM 341 (376)
Q Consensus 301 el~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~ 341 (376)
+.|+|.+-+. .|. ..+.. ..+-++++++++..-
T Consensus 101 ~~Gad~vlv~---~P~--y~~~~---~~~l~~yf~~va~a~ 133 (309)
T cd00952 101 DLGADGTMLG---RPM--WLPLD---VDTAVQFYRDVAEAV 133 (309)
T ss_pred HhCCCEEEEC---CCc--CCCCC---HHHHHHHHHHHHHhC
Confidence 9998876653 231 11110 133466667776654
No 335
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=73.63 E-value=97 Score=30.54 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+.+.+..+++++.+.+.--|+-++...-.+. +|...+..+++.+.+... .+.|- +.-|+..+.|.+..-.++|-.+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~vPV~-lHLDHg~~~e~i~~ai~~GftS 103 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYM-SGFYTVVKMVEGLMHDLNITIPVA-IHLDHGSSFEKCKEAIDAGFTS 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCCEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 45777888888888888877766655432221 236678888888877653 13332 4556655778888888888665
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCC--------HHHHHHHHHHHHHcCC
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGET--------PDQVVSTMEKVRAAGV 304 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET--------~ee~~e~L~~Lrel~v 304 (376)
+ ++|.+. .+ ..+.+...++++.|+.. |+.+-. +.|-|- |. .-+-.+..+|+++.|+
T Consensus 104 V--M~DgS~l~~-------eeNi~~T~~vve~Ah~~---gv~VEaElG~vgg~-ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 104 V--MIDASHSPF-------EENVATTKKVVEYAHEK---GVSVEAELGTVGGQ-EDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred E--EEeCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEEeccCCc-cCCCCCcccccCCHHHHHHHHHHHCC
Confidence 4 445433 11 12344566888888873 554433 333221 11 1366788899999999
Q ss_pred cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 305 d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|.+-+. + +.-|-.-.. .+.=.|++|+++....+...|
T Consensus 171 D~LAva--i--Gt~HG~Y~~-~p~Ld~~~L~~I~~~~~vPLV 207 (286)
T PRK08610 171 DALAPA--L--GSVHGPYKG-EPKLGFKEMEEIGLSTGLPLV 207 (286)
T ss_pred CEEEee--c--cccccccCC-CCCCCHHHHHHHHHHHCCCEE
Confidence 986663 1 122221111 011247777777777766444
No 336
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=73.32 E-value=52 Score=29.76 Aligned_cols=114 Identities=17% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCCchhHHHHH-HHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEec--CCCCC------ChHH
Q 017179 154 PPPPDPDEPTNVA-EAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV--PDFRG------NNGC 224 (376)
Q Consensus 154 ~~~l~~eEi~~~a-~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~--pd~~g------~~e~ 224 (376)
|..-..++.++.| +.+.++|++++++-|..... +-..++ .+.. ++.|-+.+ ..|.. ++|.
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~t-----A~k~le---mveg---~lkvVvVthh~Gf~e~g~~e~~~E~ 75 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYT-----ALKALE---MVEG---DLKVVVVTHHAGFEEKGTQEMDEEV 75 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHH-----HHHHHH---hccc---CceEEEEEeecccccCCceecCHHH
Confidence 3334456777664 66788999999998865321 222333 3322 23332222 12211 5777
Q ss_pred HHHHHHcCcccc--cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEE
Q 017179 225 VREVAKSGLNVF--AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIML 283 (376)
Q Consensus 225 l~~L~~aGld~i--~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imv 283 (376)
=+.|++-|.+++ .|.+..++ .+.++.. +++ .+++|....+.+..|++++- .||.
T Consensus 76 ~~~L~erGa~v~~~sHalSg~eRsis~kfG--G~~---p~eiiAetLR~fg~G~KVcvEItiMA 134 (186)
T COG1751 76 RKELKERGAKVLTQSHALSGVERSISRKFG--GYS---PLEIIAETLRMFGQGVKVCVEITIMA 134 (186)
T ss_pred HHHHHHcCceeeeehhhhhcchhhhhhhcC--Ccc---hHHHHHHHHHHhcCCcEEEEEEEEEe
Confidence 788999999998 45567776 6666665 333 35555555556667876654 4553
No 337
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.28 E-value=44 Score=32.30 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee-CC---CCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD-RD---DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~-r~---dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
+.|.++++|+.+.+.|+..+.=-+=+ |. .+...|.+ -.+.++++++.+ ++. +++--+ +.+.++.+.+ .+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~-gl~~L~~~~~~~-Gl~--~~Tev~--d~~~v~~~~e-~v 99 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQ-GIRYLHEVCQEF-GLL--SVSEIM--SERQLEEAYD-YL 99 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHH-HHHHHHHHHHHc-CCC--EEEeeC--CHHHHHHHHh-cC
Confidence 56788999999999999776532222 21 11112444 345555555554 232 233223 6677888877 58
Q ss_pred ccccccc-cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCc
Q 017179 234 NVFAHNI-ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVD 305 (376)
Q Consensus 234 d~i~h~l-Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd 305 (376)
|++.++- +..+ .++|+.+.+.... +.+|+++| -|.+|+...++.+++.|..
T Consensus 100 dilqIgs~~~~n----------------~~LL~~va~tgkP-Vilk~G~~----~t~~e~~~A~e~i~~~Gn~ 151 (250)
T PRK13397 100 DVIQVGARNMQN----------------FEFLKTLSHIDKP-ILFKRGLM----ATIEEYLGALSYLQDTGKS 151 (250)
T ss_pred CEEEECcccccC----------------HHHHHHHHccCCe-EEEeCCCC----CCHHHHHHHHHHHHHcCCC
Confidence 8887752 2212 2333333332111 34455533 3666666666666665553
No 338
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.23 E-value=16 Score=34.66 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
-++.+.++.+.++|+.++++|.++++.... |.+ .++++.+.+.. ++.|.+.-+-. +.+.+..+.+.|++.+-.
T Consensus 148 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~-G~~--~~li~~l~~~~-~ipvi~~GGi~--s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYTDIAKDGKMS-GPN--FELTGQLVKAT-TIPVIASGGIR--HQQDIQRLASLNVHAAII 220 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccCcCCCC-ccC--HHHHHHHHHhC-CCCEEEeCCCC--CHHHHHHHHHcCCCEEEE
Confidence 345667778889999999999998865432 221 45666666543 34444333322 788899999999886644
No 339
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=73.13 E-value=20 Score=30.22 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=45.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++++ ++++.+.+.+.|+|++.+... ...+.++++.+++..+ .+.+ +.+-- ..++..+.++++|+|.
T Consensus 37 vp~e~~---~~~a~~~~~d~V~iS~~~~~~-----~~~~~~~~~~L~~~~~~~i~i--~~GG~-~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 37 QTPEEI---VEAAIQEDVDVIGLSSLSGGH-----MTLFPEVIELLRELGAGDILV--VGGGI-IPPEDYELLKEMGVAE 105 (122)
T ss_pred CCHHHH---HHHHHHcCCCEEEEcccchhh-----HHHHHHHHHHHHhcCCCCCEE--EEECC-CCHHHHHHHHHCCCCE
Confidence 445544 555568899999998765322 3457778888888744 3333 33311 1356689999999887
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+=|
T Consensus 106 ~~~ 108 (122)
T cd02071 106 IFG 108 (122)
T ss_pred EEC
Confidence 655
No 340
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=73.06 E-value=71 Score=28.73 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
.+|+.++.+.++++.+.|++.|.|--.+....+. ...-.+.+++|++..+ .+.+.+.+-+. .+.++.+.++|+|
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~v~l~~~d~---~~~~~~~~~~g~d 82 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPN--LTFGPPVVKALRKHTDLPLDVHLMVENP---ERYIEAFAKAGAD 82 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCc--cccCHHHHHHHHhhCCCcEEEEeeeCCH---HHHHHHHHHcCCC
Confidence 3788888999999999999999883222221111 1111367777776542 23344444321 3457888899999
Q ss_pred ccc
Q 017179 235 VFA 237 (376)
Q Consensus 235 ~i~ 237 (376)
.+.
T Consensus 83 gv~ 85 (211)
T cd00429 83 IIT 85 (211)
T ss_pred EEE
Confidence 863
No 341
>PRK14057 epimerase; Provisional
Probab=72.90 E-value=18 Score=34.97 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=38.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCc--------EEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccchhH
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGVD--------VMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASGPMV 352 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~vd--------~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sgp~v 352 (376)
+|.=+-|+..+...++..+|+.|+. ...+. +.| ++|+ +.++.+-....-.=..-|..|
T Consensus 101 ~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--lnP---~Tp~------e~i~~~l~~vD~VLvMtV~PG--- 166 (254)
T PRK14057 101 CITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGIS--LCP---ATPL------DVIIPILSDVEVIQLLAVNPG--- 166 (254)
T ss_pred EEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEE--ECC---CCCH------HHHHHHHHhCCEEEEEEECCC---
Confidence 3333458777888888889988874 23333 445 3442 233333322221112234556
Q ss_pred hhhhhhcHHHHHHHHHh
Q 017179 353 RSSYKAGEFYIKSMIES 369 (376)
Q Consensus 353 rssy~a~~~~~~~~~~~ 369 (376)
.+|+.|+.++++|
T Consensus 167 ----fgGQ~Fi~~~l~K 179 (254)
T PRK14057 167 ----YGSKMRSSDLHER 179 (254)
T ss_pred ----CCchhccHHHHHH
Confidence 5688888877765
No 342
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=72.76 E-value=60 Score=34.07 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCCCCCCC--CCCchhHHHHHHHHHHC---CCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC--C
Q 017179 146 CNVKTSRAPP--PPDPDEPTNVAEAIASW---GLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD--F 218 (376)
Q Consensus 146 C~v~~~r~~~--~l~~eEi~~~a~al~~~---G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd--~ 218 (376)
|-........ ..+.++|.+.++.++.. +.-.|.+|||+. .+. +.+.++|+..++. +-.+|.+-+-. +
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEP-Tvr----~DL~eiv~~a~e~-g~~hVqinTnGirl 151 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEP-TLR----DDLIEIIKIAREE-GYDHVQLNTNGIRL 151 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCc-cch----hhHHHHHHHHhhc-CccEEEEccCceee
Confidence 6555433222 47889999999888754 568999999973 222 2366788887764 33567665532 1
Q ss_pred CCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHH
Q 017179 219 RGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVST 295 (376)
Q Consensus 219 ~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~ 295 (376)
.-+.+..+.|+++|+..+=...+.+. +.+.++ -++--+ +|+.+++ .|+. +.-++-++ |-++.++-+.
T Consensus 152 A~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~-alen~r~---~g~~-svVLVptl~rgvNd~~lG~i 221 (475)
T COG1964 152 AFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQ-ALENCRK---AGLP-SVVLVPTLIRGVNDHELGAI 221 (475)
T ss_pred ccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHH-HHHHHHh---cCCC-cEEEEeehhcccChHHHHHH
Confidence 22588899999999877655555443 444333 233334 7888887 3532 34455566 8889999999
Q ss_pred HHHHHHc
Q 017179 296 MEKVRAA 302 (376)
Q Consensus 296 L~~Lrel 302 (376)
+++..+.
T Consensus 222 irfa~~n 228 (475)
T COG1964 222 IRFALNN 228 (475)
T ss_pred HHHHHhc
Confidence 9887744
No 343
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=72.56 E-value=16 Score=34.31 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.-++.+.++.+.++|++++++|.++++.-. .|.+ .++++.+.+.. ++.+-+.-+ .++.+.+..+++.|++.+
T Consensus 146 ~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~-~G~d--~~~~~~l~~~~-~~~viasGG--v~~~~Dl~~l~~~G~~gv 217 (229)
T PF00977_consen 146 GIDLEEFAKRLEELGAGEIILTDIDRDGTM-QGPD--LELLKQLAEAV-NIPVIASGG--VRSLEDLRELKKAGIDGV 217 (229)
T ss_dssp EEEHHHHHHHHHHTT-SEEEEEETTTTTTS-SS----HHHHHHHHHHH-SSEEEEESS----SHHHHHHHHHTTECEE
T ss_pred CcCHHHHHHHHHhcCCcEEEEeeccccCCc-CCCC--HHHHHHHHHHc-CCCEEEecC--CCCHHHHHHHHHCCCcEE
Confidence 345777888889999999999999886543 3444 36777776654 344433222 227788999999998654
No 344
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=72.52 E-value=79 Score=29.03 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=97.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHH-HHhhCCCcEEEEecCCCCCC------hHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRK-LKELKPNMLIEALVPDFRGN------NGCVREVA 229 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~-Ik~~~p~i~Ie~l~pd~~g~------~e~l~~L~ 229 (376)
.+.+++.+.++.+.+.|++-++++-+ ++..++. ++. ..+.+.+......|. ...++...
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~------------~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPC------------FVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHH------------HHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999987621 3333322 222 235665544322221 22355566
Q ss_pred HcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEE
Q 017179 230 KSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lrel~vd~v~ 308 (376)
+.|+|-+...+.. ..+. ...++..++-|..+.+... |+.++. |+..| -+++++....+...++|.|+|-
T Consensus 80 ~~GAdevdvv~~~-----g~~~--~~~~~~~~~ei~~v~~~~~-g~~lkv--I~e~~~l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 80 ADGADEIDMVINI-----GALK--SGDYEAVYEEIAAVVEACG-GAPLKV--ILETGLLTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred HcCCCEEEEeecH-----HHHh--CCCHHHHHHHHHHHHHhcC-CCeEEE--EEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 6677765442211 1122 3456777777777777654 577777 67774 4578999999999999999998
Q ss_pred eecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 309 FGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 309 ~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
...-+.| .-.+++..+.+++... -.....++|
T Consensus 150 TsTG~~~--------~~at~~~v~~~~~~~~-~~v~ik~aG 181 (203)
T cd00959 150 TSTGFGP--------GGATVEDVKLMKEAVG-GRVGVKAAG 181 (203)
T ss_pred cCCCCCC--------CCCCHHHHHHHHHHhC-CCceEEEeC
Confidence 7411212 1245777777766654 223445666
No 345
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.36 E-value=91 Score=30.24 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHCC--CcEEEEEeee--C---CCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWG--LDYVVITSVD--R---DDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G--~~eIvLTsg~--r---~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L 228 (376)
.+++++.+.++.+.+.+ ++.|-|--+- . .+...+..+.+.++++++++... -+.+.+ .|+.....+..+.+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi-~~~~~~~~~~a~~l 178 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL-SPNVTDITEIAKAA 178 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC-CCChhhHHHHHHHH
Confidence 34789999999888763 7877774331 1 11100125678899999987641 144443 34332124556778
Q ss_pred HHcCcccccc-c-c-------cchH-HHHH---hhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHH
Q 017179 229 AKSGLNVFAH-N-I-------ETVE-ELQS---AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVST 295 (376)
Q Consensus 229 ~~aGld~i~h-~-l-------Etv~-~l~~---~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~ 295 (376)
.++|+|.+.. | + ++.. .+.. -+. ....+...++.+..+++.. +++ =|..|=-.|.+|..+.
T Consensus 179 ~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s-g~~~~~~~l~~v~~i~~~~--~ip---vi~~GGI~s~~da~~~ 252 (300)
T TIGR01037 179 EEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS-GPAIKPIALRMVYDVYKMV--DIP---IIGVGGITSFEDALEF 252 (300)
T ss_pred HHcCCCEEEEEccCCccccccccCceeeCCCCcccc-chhhhHHHHHHHHHHHhcC--CCC---EEEECCCCCHHHHHHH
Confidence 8999998852 2 1 1100 0000 011 0111223466777777642 122 1223445788888887
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 296 MEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 296 L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
| +.|.|.|-++.-+ . ..| ++...-.+.+.++..++||..+
T Consensus 253 l----~~GAd~V~igr~~---l-~~p---~~~~~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 253 L----MAGASAVQVGTAV---Y-YRG---FAFKKIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred H----HcCCCceeecHHH---h-cCc---hHHHHHHHHHHHHHHHcCCCCH
Confidence 7 3689988887321 1 111 1223345666777778887654
No 346
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=27 Score=34.48 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP 216 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p 216 (376)
+++|+||...|.++++.|...++|=--..+.-+....+-|.+++..||+..+++.|...++
T Consensus 25 P~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg 85 (298)
T COG3246 25 PVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVINLTTG 85 (298)
T ss_pred CCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCeEEEeccc
Confidence 6899999999999999998666553221111122226779999999999888877766554
No 347
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=71.88 E-value=32 Score=33.89 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhh
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKEL 205 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~ 205 (376)
.+..++...+..+.+.|++.|+..+||.+...+....+-.++|+.|++.
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~ 142 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSV 142 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHh
Confidence 4678888888899999999999999986533322223334666666653
No 348
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=71.87 E-value=67 Score=32.96 Aligned_cols=145 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc--------ccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLAD--------QGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREV 228 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d--------~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L 228 (376)
++++..+.++.+.+.|++.|-|=-+-...... ...+.+.++++.+++.. .+.|-+ +.|++....+.++.+
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~ 189 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAA 189 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHH
Q ss_pred HHcCccccc----------------------cc----------------ccchHHHHHhh---------cCCCCCHHHHH
Q 017179 229 AKSGLNVFA----------------------HN----------------IETVEELQSAV---------RDHRANFKQSL 261 (376)
Q Consensus 229 ~~aGld~i~----------------------h~----------------lEtv~~l~~~v---------r~r~~t~e~~L 261 (376)
.++|+|.+. |. ++.+.++++.+ .+.=.++++.+
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~ 269 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAA 269 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHH
Q ss_pred HHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 262 DVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 262 ~vl~~ak~~~p~Gi~tkt~imv-GlGET~ee~~e~L~~Lrel~vd~v 307 (376)
+.|. +.. +++.+.|.+|. |.+--.+=..++-.++++.++..+
T Consensus 270 e~i~-aGA---~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si 312 (420)
T PRK08318 270 EFIL-LGA---GTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASL 312 (420)
T ss_pred HHHH-hCC---ChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchH
No 349
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=71.79 E-value=19 Score=35.10 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHhhCCC-cEEEE-ecCCCC---CC-h--
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR---GN-N-- 222 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d------~g~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~---g~-~-- 222 (376)
.+.+++......+.+.|++.|++..||.+...| .+..+..++|+.|++...+ ..+.+ ..|... .+ .
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~ 161 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAE 161 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHH
Confidence 346788888888999999999999998543321 1234567888888854432 34442 334321 01 1
Q ss_pred -HHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc--eEEEeEE
Q 017179 223 -GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT--LTKTSIM 282 (376)
Q Consensus 223 -e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi--~tkt~im 282 (376)
+.++.=.++|++.+ +.-.-++.+...+.++.+++. |+ ++-.+||
T Consensus 162 ~~~l~~Ki~aGA~f~-------------iTQ~~fd~~~~~~~~~~~~~~---g~~~pIi~GI~ 208 (287)
T PF02219_consen 162 LKRLKKKIDAGADFI-------------ITQPFFDAEAFERFLDRLREA---GIDVPIIPGIM 208 (287)
T ss_dssp HHHHHHHHHTTESEE-------------EEEE-SSHHHHHHHHHHHHHT---THTSEEEEEEE
T ss_pred HHHHHHHHHCCCCEE-------------eccccCCHHHHHHHHHHHHHc---CCCCcEEEEEe
Confidence 12333336676643 111234556666666666663 43 4544444
No 350
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.58 E-value=40 Score=35.83 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCC-ChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRG-NNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g-~~e~l~~L~~aGld 234 (376)
-+++...+.++++.++|++.|.|-=-. .+. -.....++|++|++..| ++.|++=.=+-.| -......-.++|+|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDta--Gll--~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMA--ALL--KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCc--cCC--CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 478999999999999999999883110 011 14568899999999885 7777652222222 12233445588999
Q ss_pred ccccccc
Q 017179 235 VFAHNIE 241 (376)
Q Consensus 235 ~i~h~lE 241 (376)
.+.-.+-
T Consensus 228 ~vDtai~ 234 (499)
T PRK12330 228 VVDTAIS 234 (499)
T ss_pred EEEeecc
Confidence 8765443
No 351
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=71.55 E-value=57 Score=32.15 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=80.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+.+.+..+++++.+.+.--|+-++...-++. +|...+..+++.+.+... .+.|- +.-|+. +.+.+....++|.++
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~vPV~-lHLDH~-~~~~i~~ai~~GftS 102 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYM-GGYKVCKNLIENLVESMGITVPVA-IHLDHG-HYEDALECIEVGYTS 102 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCcEE-EECCCC-CHHHHHHHHHcCCCE
Confidence 45677788888888888877766655432321 236678888888876641 23332 555665 677888888999877
Q ss_pred ccccccchHHHHHhhcCCCCCHHHH----HHHHHHHHHhCCCCc--eEEEeEEEe-----cCCCH-HHHHHHHHHHHHcC
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQS----LDVLMMAKDYVPAGT--LTKTSIMLG-----CGETP-DQVVSTMEKVRAAG 303 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~----L~vl~~ak~~~p~Gi--~tkt~imvG-----lGET~-ee~~e~L~~Lrel~ 303 (376)
+-+ +. ...++++- .++.+.++.. |+ ....+-|.| .|++. .+..+..++. +.+
T Consensus 103 Vm~--d~----------S~l~~eEni~~t~~v~~~a~~~---gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tg 166 (293)
T PRK07315 103 IMF--DG----------SHLPVEENLKLAKEVVEKAHAK---GISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETG 166 (293)
T ss_pred EEE--cC----------CCCCHHHHHHHHHHHHHHHHHc---CCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcC
Confidence 644 11 12333433 3445555552 33 234444444 13332 4556666666 689
Q ss_pred CcEEEee
Q 017179 304 VDVMTFG 310 (376)
Q Consensus 304 vd~v~~~ 310 (376)
+|++.++
T Consensus 167 vD~LAv~ 173 (293)
T PRK07315 167 IDFLAAG 173 (293)
T ss_pred CCEEeec
Confidence 9998876
No 352
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=71.50 E-value=20 Score=32.45 Aligned_cols=65 Identities=26% Similarity=0.393 Sum_probs=46.9
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+.++++.+.|++.|.|--. ..+.+.+.++.++...|.+.|++.-+ . +.+.+..+.+.|+|.+..+
T Consensus 91 ee~~ea~~~g~d~I~lD~~--------~~~~~~~~v~~l~~~~~~v~ie~SGG-I--~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM--------SPEDLKEAVEELRELNPRVKIEASGG-I--TLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEEESS-S--STTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHhCCCEEEecCc--------CHHHHHHHHHHHhhcCCcEEEEEECC-C--CHHHHHHHHhcCCCEEEcC
Confidence 4566677889999887322 15668888998988888888886543 3 6778999999999988653
No 353
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.47 E-value=88 Score=31.07 Aligned_cols=170 Identities=15% Similarity=0.246 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee---CCCCCccc-HHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcC
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD---RDDLADQG-SGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~---r~dl~d~g-~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aG 232 (376)
+++|..+.++.+.+.|++.|.|=-.- ..+..... .+.+.++++++++.. ++.|-+ +.|++....+..+.+.++|
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G 190 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAG 190 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcC
Confidence 46788888999888999988873211 11111000 235788999998754 233332 4555422356677888999
Q ss_pred cccccc-c--ccc-hH-HHHH-h----hcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHHHHH
Q 017179 233 LNVFAH-N--IET-VE-ELQS-A----VRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTMEKVR 300 (376)
Q Consensus 233 ld~i~h-~--lEt-v~-~l~~-~----vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~~Lr 300 (376)
+|.+.. | ... ++ +..+ . +. ..+.....++.+..+++.. +++ |+|- -.|.+|..+.|.
T Consensus 191 ~dgI~~~n~~~~~~~d~~~~~~~~~~gls-g~~~~~~al~~v~~~~~~~--~ip-----Iig~GGI~s~~Da~e~l~--- 259 (334)
T PRK07565 191 ADGLVLFNRFYQPDIDLETLEVVPGLVLS-TPAELRLPLRWIAILSGRV--GAD-----LAATTGVHDAEDVIKMLL--- 259 (334)
T ss_pred CCeEEEECCcCCCCcChhhcccccCCCCC-CchhhhHHHHHHHHHHhhc--CCC-----EEEECCCCCHHHHHHHHH---
Confidence 997633 2 110 11 0000 0 11 1223445667777776632 122 2233 478898888873
Q ss_pred HcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 301 el~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
.|.+.|-++.-+ ...-+ . +-.+-.+.|.++....||..+
T Consensus 260 -aGA~~V~v~t~~---~~~g~--~-~~~~i~~~L~~~l~~~g~~~i 298 (334)
T PRK07565 260 -AGADVVMIASAL---LRHGP--D-YIGTILRGLEDWMERHGYESL 298 (334)
T ss_pred -cCCCceeeehHH---hhhCc--H-HHHHHHHHHHHHHHHcCCCCH
Confidence 788888876221 11111 1 122345666777777777554
No 354
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=71.30 E-value=1.1e+02 Score=30.39 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+..+.+.|- +.-|+..+.|.+..-.++|-+++
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~--~g~~~~~~~~~~~a~~~~~VPVa-lHLDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 25 VNFEMLNAIFEAGNEENSPLFIQASEGAIKY--MGIDMAVGMVKIMCERYPHIPVA-LHLDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhh--CChHHHHHHHHHHHHhcCCCeEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4577788888888888877776655533222 34677888888887766445553 55566557888888889996654
Q ss_pred cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEE--eEEEecCCCH----------HHHHHHHHHHHHcC
Q 017179 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKT--SIMLGCGETP----------DQVVSTMEKVRAAG 303 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt--~imvGlGET~----------ee~~e~L~~Lrel~ 303 (376)
++|.+. .+- .+.+...++++.||.. |+.+-. +-|-|- |.. -+-.+..+|+++.|
T Consensus 102 --M~DgS~l~~e-------eNi~~T~~vve~Ah~~---gv~VEaElG~vgg~-ed~~~~~~~~~~~TdPeeA~~Fv~~Tg 168 (307)
T PRK05835 102 --MIDASHHAFE-------ENLELTSKVVKMAHNA---GVSVEAELGRLMGI-EDNISVDEKDAVLVNPKEAEQFVKESQ 168 (307)
T ss_pred --EEeCCCCCHH-------HHHHHHHHHHHHHHHc---CCEEEEEecccCCc-cCCcccccccccCCCHHHHHHHHHhhC
Confidence 345443 111 2344556788888873 554433 333222 111 12578889999999
Q ss_pred CcEEEeecCCCCCCCCCCCc--ccCChHHHHHHHHHHHHHhhhhh---ccc
Q 017179 304 VDVMTFGQYMRPSKRHMPVS--EYITPEAFERYRALGMEMGFRYV---ASG 349 (376)
Q Consensus 304 vd~v~~~qY~~P~~~~~~v~--~~v~pe~~~~l~~~a~~~gf~~~---~sg 349 (376)
+|.+-+. + +.-|-.-. . .+.=.|++|++++.......| .||
T Consensus 169 vD~LAva--i--Gt~HG~Yk~~~-~p~L~f~~L~~I~~~~~iPLVLHGgSG 214 (307)
T PRK05835 169 VDYLAPA--I--GTSHGAFKFKG-EPKLDFERLQEVKRLTNIPLVLHGASA 214 (307)
T ss_pred CCEEEEc--c--CccccccCCCC-CCccCHHHHHHHHHHhCCCEEEeCCCC
Confidence 9987663 1 12232111 1 112258888888887776444 455
No 355
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=71.16 E-value=66 Score=32.36 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=52.9
Q ss_pred hHHHHHHHHcCc--ccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHHH
Q 017179 222 NGCVREVAKSGL--NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTME 297 (376)
Q Consensus 222 ~e~l~~L~~aGl--d~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L~ 297 (376)
.+.|..|+++|+ |.+..+=|+...++--.. +..++++...+|..+.+.... ..-.+-|||-+ |...+.+.--++
T Consensus 113 ~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g-~~~~~~~~a~ll~ag~~AVr~-~~p~~kV~lH~~~~~~~~~~~~~f~ 190 (332)
T PF07745_consen 113 KDVLQALKAAGVTPDMVQVGNEINNGMLWPDG-KPSNWDNLAKLLNAGIKAVRE-VDPNIKVMLHLANGGDNDLYRWFFD 190 (332)
T ss_dssp HHHHHHHHHTT--ESEEEESSSGGGESTBTTT-CTT-HHHHHHHHHHHHHHHHT-HSSTSEEEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccEEEeCccccccccCcCC-CccCHHHHHHHHHHHHHHHHh-cCCCCcEEEEECCCCchHHHHHHHH
Confidence 567788998886 345554454443333222 357788888887533332111 22345567777 777777788888
Q ss_pred HHHHcC--CcEEEeecC
Q 017179 298 KVRAAG--VDVMTFGQY 312 (376)
Q Consensus 298 ~Lrel~--vd~v~~~qY 312 (376)
.|+..+ +|+|.+.-|
T Consensus 191 ~l~~~g~d~DviGlSyY 207 (332)
T PF07745_consen 191 NLKAAGVDFDVIGLSYY 207 (332)
T ss_dssp HHHHTTGG-SEEEEEE-
T ss_pred HHHhcCCCcceEEEecC
Confidence 888865 578999655
No 356
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.03 E-value=16 Score=38.86 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc-
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN- 239 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~- 239 (376)
+-.+.++++.+.|++-|+|-.. ++-..+..++|+.||+.+|++.|- .++.. +.+....+.++|+|.+-.+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~------~g~~~~~~~~i~~ik~~~p~~~vi--~g~v~-t~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSS------QGDSIYQLEMIKYIKKTYPELDVI--GGNVV-TMYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCC------CCCcHHHHHHHHHHHHhCCCCcEE--EecCC-CHHHHHHHHHcCcCEEEECC
Confidence 4467899999999999988553 222445678999999998876542 12221 5677888999999998432
Q ss_pred ----ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 240 ----IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 240 ----lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.+.+.... +. +. ... -+..+..+.+.. ++++- .=|=--+..|+...|. +|.+.|-+|..|
T Consensus 319 g~G~~~~t~~~~~-~g-~~-~~~-~i~~~~~~~~~~--~vpVI---adGGI~~~~di~kAla----~GA~~V~vGs~~ 383 (505)
T PLN02274 319 GSGSICTTQEVCA-VG-RG-QAT-AVYKVASIAAQH--GVPVI---ADGGISNSGHIVKALT----LGASTVMMGSFL 383 (505)
T ss_pred CCCccccCccccc-cC-CC-ccc-HHHHHHHHHHhc--CCeEE---EeCCCCCHHHHHHHHH----cCCCEEEEchhh
Confidence 222221110 11 00 111 222233333321 23321 1122357777766654 688888887665
No 357
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=71.00 E-value=9.7 Score=38.04 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=41.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcc-c------HHHHHHHHHHHHhhCCCcEEE
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-G------SGHFAQTVRKLKELKPNMLIE 212 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~-g------~~~~~elvr~Ik~~~p~i~Ie 212 (376)
++.+.+.+.++.+.++|++.|.|=|+..++..|. | ..-+...|+.||+.+|++.|-
T Consensus 54 ~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi 116 (324)
T PF00490_consen 54 YSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVI 116 (324)
T ss_dssp EEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEE
T ss_pred eCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEE
Confidence 7899999999999999999999999854444331 1 124788999999999997663
No 358
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=70.97 E-value=79 Score=30.46 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc-cccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIET 242 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h-~lEt 242 (376)
..++.+...|++.|+|-.-+.+ + +.+.+.++++++...--...|++ |+. +...++++.++|++.+-. ++++
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~-~---~~~~~~~~i~a~~~~g~~~lVRv--p~~--~~~~i~r~LD~Ga~giivP~v~t 102 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAP-N---DVSTFIPQLMALKGSASAPVVRV--PTN--EPVIIKRLLDIGFYNFLIPFVET 102 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCC-C---CHHHHHHHHHHHhhcCCCcEEEC--CCC--CHHHHHHHhCCCCCeeeecCcCC
Confidence 3566778999999998665432 1 25567778887765422234444 333 567899999999986532 2677
Q ss_pred hHHHHHhh---c--C---CCC-------CHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 243 VEELQSAV---R--D---HRA-------NFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 243 v~~l~~~v---r--~---r~~-------t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
.++....+ + | |+. .|...-+.++.+-+ . +..-+| -||.+-+.+.=+.+.--++|.+
T Consensus 103 ae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~---~---~~vi~~---IEt~~av~ni~eI~av~gvd~l 173 (256)
T PRK10558 103 AEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNK---N---ITVLVQ---IESQQGVDNVDAIAATEGVDGI 173 (256)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhcc---c---cEEEEE---ECCHHHHHHHHHHhCCCCCcEE
Confidence 66444332 1 1 111 12211122222211 1 222222 3999887665554443469999
Q ss_pred EeecC
Q 017179 308 TFGQY 312 (376)
Q Consensus 308 ~~~qY 312 (376)
.||.+
T Consensus 174 ~iG~~ 178 (256)
T PRK10558 174 FVGPS 178 (256)
T ss_pred EECHH
Confidence 99844
No 359
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=70.95 E-value=37 Score=33.39 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
..+|.++.+++.++.|.+-|.+-++.. + .+.+.++++.++..+|.+.+- ..|.-. ..-.+++|.+.|.+++.
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~----~--~~ei~~~~~~~~~~~p~~pl~-~~~~~~-~~~~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKK----D--PDEILEFARRFRNHYPRTPLV-IVPTSY-YTTPTDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC----C--HHHHHHHHHHhhhhCCCCCEE-EecCCC-CCCCHHHHHHcCCCEEE
Confidence 367888888888888888887764321 1 345667777776655555442 222100 11247888888988876
Q ss_pred cc
Q 017179 238 HN 239 (376)
Q Consensus 238 h~ 239 (376)
+.
T Consensus 239 ~~ 240 (285)
T TIGR02320 239 YA 240 (285)
T ss_pred Eh
Confidence 64
No 360
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=70.87 E-value=83 Score=28.87 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeee-----CCCCCc----ccHHHHHHHHHHHHhhCC-CcEEEEecC-CCC-CChHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVD-----RDDLAD----QGSGHFAQTVRKLKELKP-NMLIEALVP-DFR-GNNGC 224 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~-----r~dl~d----~g~~~~~elvr~Ik~~~p-~i~Ie~l~p-d~~-g~~e~ 224 (376)
-++++..+.|+.+.+.|++.|-|-.+. +.|-.. ...+.+.++++++++..+ .+.+.+-.+ +.. ...+.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHH
Confidence 368899999999999999999887663 111100 124567889999987654 344443222 111 12455
Q ss_pred HHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCC
Q 017179 225 VREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 225 l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~v 304 (376)
++.+.++|+|.+...--+.+. ... ...+ ++.++.+++.. . +++.. .|=-.|.+++.+.+. .-++
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~---~~~-~~~~----~~~~~~i~~~~-~-ipvi~---~Ggi~~~~d~~~~l~---~~ga 207 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQ---RYS-GPAD----WDYIAEIKEAV-S-IPVIA---NGDIFSLEDALRCLE---QTGV 207 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHH---cCC-CCCC----HHHHHHHHhCC-C-CeEEE---eCCCCCHHHHHHHHH---hcCC
Confidence 677888898877542111111 112 2233 34555565521 1 22211 122357777666553 3589
Q ss_pred cEEEee
Q 017179 305 DVMTFG 310 (376)
Q Consensus 305 d~v~~~ 310 (376)
|.|-++
T Consensus 208 d~V~ig 213 (231)
T cd02801 208 DGVMIG 213 (231)
T ss_pred CEEEEc
Confidence 999887
No 361
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.84 E-value=6.6 Score=36.08 Aligned_cols=127 Identities=21% Similarity=0.326 Sum_probs=65.1
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcc----cHHHHHHHHHHHHhhCC--CcEEEE-ecCCCCCChHHHHHHHHcCcc
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQ----GSGHFAQTVRKLKELKP--NMLIEA-LVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~----g~~~~~elvr~Ik~~~p--~i~Ie~-l~pd~~g~~e~l~~L~~aGld 234 (376)
-...|+++...|..=++|+|-..-+.|.+ ......++.+++.+..+ ++.|.+ -+.||.-....-..++.++-+
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~ 111 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDFRPEEPAEGKIKKSSGD 111 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SEEESCHHSS-G---TT-
T ss_pred HHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchhheeehhccccccccccCc
Confidence 35678899999997666665432122321 12234455555544433 455543 455774322223445544344
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+...++..+.++..++ +...|. .++||| =||++.+....+.|.+-++|+|-.-
T Consensus 112 ~l~l~L~~~pkIL~~l~----------------~~~~~~------~~lVGFkaEt~~l~~~A~~kl~~k~~D~IVaN 166 (185)
T PF04127_consen 112 ELTLELKPTPKILAELR----------------KNKKPN------QFLVGFKAETEELIENAKEKLERKGADLIVAN 166 (185)
T ss_dssp CEEEEEEE-GGHGCCHH----------------HHCSTT------TEEEEEEEESCHHHHHHHHHHHHCT-SEEEEE
T ss_pred ceEEEEEeChHHHHHHH----------------hcccCC------cEEEEEEecCCcHHHHHHHHhHhhCCCEEEEe
Confidence 45555665666665553 111122 269999 8998777788889999999998664
No 362
>PLN02417 dihydrodipicolinate synthase
Probab=70.68 E-value=50 Score=31.99 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=43.5
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|++.+-.+=-|-+ . ..-+.+++.++++.+.+.... +.-+|+|.| .+-+|.++..+..+
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE-~------~~ls~~Er~~~~~~~~~~~~~----~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGE-G------QLMSWDEHIMLIGHTVNCFGG----KIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcc-h------hhCCHHHHHHHHHHHHHHhCC----CCcEEEECCCccHHHHHHHHHHHH
Confidence 34455556666665422211111 0 123467777777776664321 345677774 46777777777777
Q ss_pred HcCCcEEEe
Q 017179 301 AAGVDVMTF 309 (376)
Q Consensus 301 el~vd~v~~ 309 (376)
++|.|.+-+
T Consensus 94 ~~Gadav~~ 102 (280)
T PLN02417 94 AVGMHAALH 102 (280)
T ss_pred HcCCCEEEE
Confidence 777776555
No 363
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=70.58 E-value=1.5e+02 Score=31.27 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=79.1
Q ss_pred CCchhHHHHHHHH-----HHCC----CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHH
Q 017179 157 PDPDEPTNVAEAI-----ASWG----LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE 227 (376)
Q Consensus 157 l~~eEi~~~a~al-----~~~G----~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~ 227 (376)
++.+++...++.+ .+.| ++-|.|-.... | .+.+..+|+.|++.. ++.+.+-+ + +.+.++.
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~----d--p~~v~~~Vk~V~~~~-dvPLSIDT--~--dpevlea 170 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG----D--PEKFAKAVKKVAETT-DLPLILCS--E--DPAVLKA 170 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC----C--HHHHHHHHHHHHHhc-CCCEEEeC--C--CHHHHHH
Confidence 6778898888888 4445 66666543211 2 567899999998753 34444333 2 6788888
Q ss_pred HHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
-.++|.|..+. |. ..+.+.+-++++.+++. |..+. + .+...+.+.+.++.+.+.|++-+
T Consensus 171 Aleagad~~pl-----------I~--Sat~dN~~~m~~la~~y---g~pvV----v-~~~dl~~L~~lv~~~~~~GI~dI 229 (450)
T PRK04165 171 ALEVVADRKPL-----------LY--AATKENYEEMAELAKEY---NCPLV----V-KAPNLEELKELVEKLQAAGIKDL 229 (450)
T ss_pred HHHhcCCCCce-----------EE--ecCcchHHHHHHHHHHc---CCcEE----E-EchhHHHHHHHHHHHHHcCCCcE
Confidence 88888774433 21 12223333344444442 22111 1 11124556666666777776433
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
-+ -|+..+ +..- -+.+..+|..|...+|+.
T Consensus 230 IL----DPg~gg--f~ks--l~~~~~iRr~Al~~~~~~ 259 (450)
T PRK04165 230 VL----DPGTEN--IKET--LDDFVQIRRAAIKKGDRP 259 (450)
T ss_pred EE----CCCCch--hhhh--HHHHHHHHhhhhhccccc
Confidence 33 343211 1111 144556666666555544
No 364
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=70.51 E-value=35 Score=33.16 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=72.7
Q ss_pred CchhHHHHHHHHHHC-C---CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 158 DPDEPTNVAEAIASW-G---LDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 158 ~~eEi~~~a~al~~~-G---~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
+.+++..+++++.+. . -++.++-.|+..+.+ ....|..+=..+++.. |++.|..+-+.-. -++.+.+|++.|
T Consensus 120 ~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~--an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~-~~~vi~~L~~~g 196 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHP--ANAAYSALQAMLKKHGYPNVFVGTVEGYPS-LEDVIARLKKKG 196 (262)
T ss_dssp SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCH--HHHHHHHHHHHHHCCT-TTEEEEETTSSSB-HHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCC--ccHHHHHHHHHHHhCCCCeEEEEEeCCCCC-HHHHHHHHHhcC
Confidence 477888888888653 2 467777777754433 2334555545555543 6788877654221 267899999999
Q ss_pred cccc---cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 233 LNVF---AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 233 ld~i---~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
...+ |..+=.-+-..+-|. +..-+.|...|+. .|+.+ +..+-||||.++=..--++.|++
T Consensus 197 ~k~V~L~PlMlVAGdHa~nDma--Gde~dSWks~L~~------~G~~v-~~~l~GLGE~~~i~~ifi~hl~~ 259 (262)
T PF06180_consen 197 IKKVHLIPLMLVAGDHAKNDMA--GDEEDSWKSRLEA------AGFEV-TCVLKGLGEYPAIQQIFIEHLKE 259 (262)
T ss_dssp -SEEEEEEESSS--HHHHCCCC--SSSTTSHHHHHHH------TT-EE-EE----GGGSHHHHHHHHHHHHH
T ss_pred CCeEEEEecccccchhhhhhhc--CCCcchHHHHHHH------CCCEE-EEEeccCcCCHHHHHHHHHHHHH
Confidence 7654 333322244445554 2334555566655 37765 55889999999866555555543
No 365
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=69.96 E-value=1.1e+02 Score=29.50 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=71.2
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
+..++.+.|++..+.|..-+.+.. .+++..++ .+.|+.+++.. .+-++..||.-++-.+....++|+|.+.
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvlt--e~~~f~g~----~~~l~~v~~~v---~iPvl~kdfi~~~~qi~~a~~~GAD~Vl 138 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVLT--DERFFQGS----LEYLRAARAAV---SLPVLRKDFIIDPYQIYEARAAGADAIL 138 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEec--ccccCCCC----HHHHHHHHHhc---CCCEEeeeecCCHHHHHHHHHcCCCEEE
Confidence 345788899999999997663321 12222222 35566666542 2233457777677789999999999887
Q ss_pred ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 238 h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
..... .+.++.-++++.++++ |+.+=..+ -+.+|... ..+++++++.+.
T Consensus 139 Li~~~------------l~~~~l~~li~~a~~l---Gl~~lvev-----h~~~E~~~----A~~~gadiIgin 187 (260)
T PRK00278 139 LIVAA------------LDDEQLKELLDYAHSL---GLDVLVEV-----HDEEELER----ALKLGAPLIGIN 187 (260)
T ss_pred EEecc------------CCHHHHHHHHHHHHHc---CCeEEEEe-----CCHHHHHH----HHHcCCCEEEEC
Confidence 63221 1234555667777763 44322222 25555533 446688887765
No 366
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.66 E-value=83 Score=30.41 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=46.4
Q ss_pred HHHHHHHHcCcccccccccchHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEtv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
+..+.+.++|.|.+..|+-.-. .+...+ -..+.+...++++.+++.. +++ +++-++-+.+|..+..+.+.+
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~--~~~~g~~~~~~~~~~~eiv~~vr~~~--~~P----v~vKl~~~~~~~~~~a~~~~~ 177 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPN--VKGGGMAFGTDPEAVAEIVKAVKKAT--DVP----VIVKLTPNVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCC--CCCCcccccCCHHHHHHHHHHHHhcc--CCC----EEEEeCCCchhHHHHHHHHHH
Confidence 4455566667776666543211 000000 1234567778888888742 122 233333344578888999999
Q ss_pred cCCcEEEeec
Q 017179 302 AGVDVMTFGQ 311 (376)
Q Consensus 302 l~vd~v~~~q 311 (376)
.++|.+.+.+
T Consensus 178 ~G~d~i~~~n 187 (296)
T cd04740 178 AGADGLTLIN 187 (296)
T ss_pred cCCCEEEEEC
Confidence 9999887753
No 367
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.27 E-value=1.3e+02 Score=30.18 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHHH-HCCCcEEEEE--eeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEec-CCCCCChHHHHHHHHcCcccccc
Q 017179 163 TNVAEAIA-SWGLDYVVIT--SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALV-PDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~-~~G~~eIvLT--sg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~-pd~~g~~e~l~~L~~aGld~i~h 238 (376)
.+.|+... +.|.+.|.|- |++ ++..|.+.+.++.+++.+.+.. ++.+.++. .+...+.+.++...+ .+..
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~d-p~~~d~~~~e~~~~Vk~V~eav-d~PL~Id~s~n~~kD~evleaale----~~~g 151 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTD-PNGKDKSPEEAAKTVEEVLQAV-DVPLIIGGSGNPEKDAEVLEKVAE----AAEG 151 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-cccccchHHHHHHHHHHHHHhC-CCCEEEecCCCCCCCHHHHHHHHH----HhCC
Confidence 44444444 8899988886 333 3333445677899999986654 34333331 111114555554433 3322
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCC--cEEEeecCCCC
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGV--DVMTFGQYMRP 315 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lrel~v--d~v~~~qY~~P 315 (376)
. ..-+. ..+.+.+-+++..|+++ |.. ++++. -..+...++...|.++|+ +-+-|-+...|
T Consensus 152 ~-------~pLIn--Sat~en~~~i~~lA~~y---~~~-----Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~~ 214 (319)
T PRK04452 152 E-------RCLLG--SAEEDNYKKIAAAAMAY---GHA-----VIAWSPLDINLAKQLNILLTELGVPRERIVMDPTTGA 214 (319)
T ss_pred C-------CCEEE--ECCHHHHHHHHHHHHHh---CCe-----EEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCCccc
Confidence 0 01133 46677777888888874 322 22332 346666677778888898 55555422222
Q ss_pred CCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 316 SKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 316 ~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
- ++-+. -.-+-++.+|..|.. |+...
T Consensus 215 l--g~g~e--~~~~~~e~IR~aAl~-~d~~l 240 (319)
T PRK04452 215 L--GYGIE--YSYSVMERIRLAALK-GDEML 240 (319)
T ss_pred c--cCCHH--HHHHHHHHHHHHHhc-CCCcC
Confidence 1 11111 124568888889987 87654
No 368
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.21 E-value=20 Score=35.07 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc------ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD------QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d------~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
++++|..+.++.+.+.|+++|.++++....... .+.....+.++.|++.. ++.|- ..+.+. +.+.+..+.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi-~~Ggi~-t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVI-AVGGIR-DPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEE-EeCCCC-CHHHHHHHHH
Confidence 577899999999999999999999886422110 01134567777887765 24332 233432 5677777777
Q ss_pred c-Cccccccc
Q 017179 231 S-GLNVFAHN 239 (376)
Q Consensus 231 a-Gld~i~h~ 239 (376)
. |+|.+..+
T Consensus 302 ~g~aD~V~ig 311 (327)
T cd02803 302 EGKADLVALG 311 (327)
T ss_pred CCCCCeeeec
Confidence 7 78888765
No 369
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.20 E-value=42 Score=31.88 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=10.7
Q ss_pred HHHHHHHHH-HHhhhhhcc
Q 017179 331 FERYRALGM-EMGFRYVAS 348 (376)
Q Consensus 331 ~~~l~~~a~-~~gf~~~~s 348 (376)
.++++.++. +.||.|+.+
T Consensus 142 ~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 142 DERIKKIAELASGFIYYVS 160 (242)
T ss_pred HHHHHHHHhhCCCCEEEEe
Confidence 344555555 678877644
No 370
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.16 E-value=41 Score=33.43 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=52.9
Q ss_pred HHHHHHHHcCccccccccc---chHHHHHh-hcCC----CCCHHH----HHHHHHHHHHhCCCCceEEEeEE----EecC
Q 017179 223 GCVREVAKSGLNVFAHNIE---TVEELQSA-VRDH----RANFKQ----SLDVLMMAKDYVPAGTLTKTSIM----LGCG 286 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lE---tv~~l~~~-vr~r----~~t~e~----~L~vl~~ak~~~p~Gi~tkt~im----vGlG 286 (376)
+..+..+++|.|.+.++.- .....+.. .+.| +.+++. .+++|+.+++..+.++.+...+= .--|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 3456777888888755421 01111111 1101 234443 35688888887654444433321 1126
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 287 ETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 287 ET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
-|.+|.++.++.|.+.++|++.+..
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecC
Confidence 6899999999999999999998753
No 371
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=68.71 E-value=1.1e+02 Score=29.29 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=100.4
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCCChHHH----HHHHHcCccccccc
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRGNNGCV----REVAKSGLNVFAHN 239 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g~~e~l----~~L~~aGld~i~h~ 239 (376)
+|..+.+.|.+-|-+= .|.-.-.|+ .+..+|++|.+..|+ ..+.+-++|+-..+..+ .....+|+|.+-.+
T Consensus 12 EA~~a~~~gaDiID~K---~P~~GaLGA-~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvG 87 (235)
T PF04476_consen 12 EAEEALAGGADIIDLK---NPAEGALGA-LFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVG 87 (235)
T ss_pred HHHHHHhCCCCEEEcc---CCCCCCCCC-CCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEe
Confidence 4555667787776332 111101233 367888888887763 67777777764333332 22445688877665
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecCCCHH----HHHHHHHHHHHcCCcEEEeecCCC
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPD----QVVSTMEKVRAAGVDVMTFGQYMR 314 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlGET~e----e~~e~L~~Lrel~vd~v~~~qY~~ 314 (376)
+= +..++++.++.++.+.+.... . .-+.=+-+++..... +-.+....+.+.+++.+-+=.+.
T Consensus 88 l~-----------g~~~~~~a~e~l~~v~~av~~-~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~- 154 (235)
T PF04476_consen 88 LF-----------GCKDYDEAIEALEAVVRAVKD-FDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTAD- 154 (235)
T ss_pred cC-----------CCCCHHHHHHHHHHHHHHHhh-hCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEeccc-
Confidence 21 235666666666554332111 1 112335555544322 23566778889999988885443
Q ss_pred CCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 315 PSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 315 P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.+..+.+++.+++...+-+.+++.|......|
T Consensus 155 --Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAG 187 (235)
T PF04476_consen 155 --KDGGSLFDHLSEEELAEFVAQARAHGLMCALAG 187 (235)
T ss_pred --CCCCchhhcCCHHHHHHHHHHHHHccchhhccc
Confidence 556667788889999999999999888776666
No 372
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=68.64 E-value=1.3e+02 Score=29.76 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=100.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-. ..|.+.+..+++.+.+.. .+.|- +.-|+..+.+.+..-.++|-.++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~--~~~~~~~~~~~~~~a~~~-~VPVa-lHLDHg~~~e~i~~ai~~GFtSV 101 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFK--HIALEEIYALCSAYSTTY-NMPLA-LHLDHHESLDDIRRKVHAGVRSA 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhh--hCCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCeE
Confidence 356777888888888888666655543222 234677888888887765 34443 45566557788888888886544
Q ss_pred cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC----H--H----HHHHHHHHHHHcC
Q 017179 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET----P--D----QVVSTMEKVRAAG 303 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET----~--e----e~~e~L~~Lrel~ 303 (376)
++|.+. .+ ..+.+...++++.||.. |+.| --+-|=|- |. . + +-.+..+|+++.|
T Consensus 102 --M~DgS~lp~-------eeNi~~T~evv~~Ah~~---gv~VEaElG~igg~-ed~~~~~~~~~~~T~peea~~Fv~~Tg 168 (286)
T PRK12738 102 --MIDGSHFPF-------AENVKLVKSVVDFCHSQ---DCSVEAELGRLGGV-EDDMSVDAESAFLTDPQEAKRFVELTG 168 (286)
T ss_pred --eecCCCCCH-------HHHHHHHHHHHHHHHHc---CCeEEEEEEeeCCc-cCCcccccchhcCCCHHHHHHHHHHhC
Confidence 455443 11 12345566888888884 5544 33333222 21 1 1 5678889999999
Q ss_pred CcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 304 VDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 304 vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
+|.+-+. + +.-|-.-... +.=.|++|+++....+...|
T Consensus 169 vD~LAva-i---Gt~HG~Y~~~-p~Ldfd~l~~I~~~~~vPLV 206 (286)
T PRK12738 169 VDSLAVA-I---GTAHGLYSKT-PKIDFQRLAEIREVVDVPLV 206 (286)
T ss_pred CCEEEec-c---CcccCCCCCC-CcCCHHHHHHHHHHhCCCEE
Confidence 9987663 1 1222211110 11247777777666655333
No 373
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=68.53 E-value=89 Score=31.22 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCCchhHHHHHHHHHH-CCC-cEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 156 PPDPDEPTNVAEAIAS-WGL-DYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~-~G~-~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
.++.+|+....+.+.. ..- +.|+|.|-..+.++ .++|.++++.+++....+.+ |. +.+.|....++++
T Consensus 110 ~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~---~d~y~~li~~~~~~g~~vil-----D~--Sg~~L~~~L~~~P 179 (310)
T COG1105 110 EISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP---PDAYAELIRILRQQGAKVIL-----DT--SGEALLAALEAKP 179 (310)
T ss_pred CCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC---HHHHHHHHHHHHhcCCeEEE-----EC--ChHHHHHHHccCC
Confidence 3788888887777776 443 44555543344444 68899999999886432222 22 4577888888888
Q ss_pred ccccccccchHHHH
Q 017179 234 NVFAHNIETVEELQ 247 (376)
Q Consensus 234 d~i~h~lEtv~~l~ 247 (376)
..+--|.|....++
T Consensus 180 ~lIKPN~~EL~~~~ 193 (310)
T COG1105 180 WLIKPNREELEALF 193 (310)
T ss_pred cEEecCHHHHHHHh
Confidence 88776655544443
No 374
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.52 E-value=33 Score=33.00 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCC---CC---------Cccc---H---HHHHHHHHHHHhhCC-CcEEEEecCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---DL---------ADQG---S---GHFAQTVRKLKELKP-NMLIEALVPD 217 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~---dl---------~d~g---~---~~~~elvr~Ik~~~p-~i~Ie~l~pd 217 (376)
.+.+++.+.++.+.+.|++.|++++.... +. ..+| . ..-.+.+++|++..+ ++.|-.. +.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~-GG 251 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV-GG 251 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE-CC
Confidence 56778999999999999999999865321 00 0011 1 113566788877664 4554332 33
Q ss_pred CCCChHHHHHHHHcCccccccc
Q 017179 218 FRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 218 ~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.. +.+.+.++..+|+|.+...
T Consensus 252 I~-~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 252 ID-SGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CC-CHHHHHHHHHcCccHheEc
Confidence 32 5677777778999887664
No 375
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=68.40 E-value=70 Score=30.30 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHhhhhhccc---hhHhhh
Q 017179 328 PEAFERYRALGMEMGFRYVASG---PMVRSS 355 (376)
Q Consensus 328 pe~~~~l~~~a~~~gf~~~~sg---p~vrss 355 (376)
.++.+.+-+.|. +|-|+.|- -=+|+|
T Consensus 161 deRmell~~~ad--sFiYvVSrmG~TG~~~s 189 (268)
T KOG4175|consen 161 DERMELLVEAAD--SFIYVVSRMGVTGTRES 189 (268)
T ss_pred HHHHHHHHHhhc--ceEEEEEeccccccHHH
Confidence 567777777766 68887653 125666
No 376
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.38 E-value=1.3e+02 Score=29.69 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=99.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-++ .|.+.+..+++.+.+.. .+.|- +.-|+..+.+.+..-.++|-.+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~--~g~~~~~~~~~~~A~~~-~VPVa-lHLDH~~~~e~i~~ai~~GftS- 100 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVIIQASQGAIKY--AGIEYISAMVRTAAEKA-SVPVA-LHLDHGTDFEQVMKCIRNGFTS- 100 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEechhHhhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHcCCCe-
Confidence 3567777888888888876666555433222 34677888888887765 24333 4556655778888888888654
Q ss_pred cccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEec-CC----CHH----HHHHHHHHHHHcCC
Q 017179 237 AHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGC-GE----TPD----QVVSTMEKVRAAGV 304 (376)
Q Consensus 237 ~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGl-GE----T~e----e~~e~L~~Lrel~v 304 (376)
+.+|.+. .+ .-+.+...++++.||.. |+.+ --+-|-|- +. +.+ +..+..+|+++.++
T Consensus 101 -VM~DgS~lp~-------eeNi~~T~~vv~~Ah~~---gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~Tgv 169 (284)
T PRK12857 101 -VMIDGSKLPL-------EENIALTKKVVEIAHAV---GVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGV 169 (284)
T ss_pred -EEEeCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCC
Confidence 3456543 22 22455667888888873 5544 33343332 11 112 56788899999999
Q ss_pred cEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 305 DVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 305 d~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|.+-+. + +.-|-.-... +.=.|+.|+++....+...|
T Consensus 170 D~LAva-i---Gt~HG~y~~~-p~Ld~~~L~~i~~~~~vPLV 206 (284)
T PRK12857 170 DALAIA-I---GTAHGPYKGE-PKLDFDRLAKIKELVNIPIV 206 (284)
T ss_pred CEEeec-c---CccccccCCC-CcCCHHHHHHHHHHhCCCEE
Confidence 987663 1 1222211110 11246667777666655333
No 377
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=68.30 E-value=1.6 Score=43.84 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=28.6
Q ss_pred CcCCCCCCCCCCCCCCchhHHHHHHHHH-HCCCcEEEEEee
Q 017179 143 CRFCNVKTSRAPPPPDPDEPTNVAEAIA-SWGLDYVVITSV 182 (376)
Q Consensus 143 C~FC~v~~~r~~~~l~~eEi~~~a~al~-~~G~~eIvLTsg 182 (376)
=+||.+..+++ ...+.+++.+.++.+. +.|+ +++++-|
T Consensus 102 ~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~l-e~c~slG 140 (335)
T COG0502 102 TRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGL-EVCASLG 140 (335)
T ss_pred ceEEEEEeccC-CCccHHHHHHHHHHHHHhcCc-HHhhccC
Confidence 35888887776 4578899999999988 6785 6666666
No 378
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=68.18 E-value=67 Score=32.69 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=78.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.|.+.-++.+.++++.|+.-|.++-.+. .-++.++.|++..| +. +..|..-+......-.++|+|-+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~---------~~a~al~~I~~~~~-iP---lvADIHFd~~lAl~a~~~G~~~i 105 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDM---------EAAAALPEIKKQLP-VP---LVADIHFDYRLALAAAEAGADAL 105 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCH---------HHHHhHHHHHHcCC-CC---EEEecCCCHHHHHHHHHhCCCEE
Confidence 4566667777888899999998874322 23567778887654 22 23332226666667778888766
Q ss_pred cccccchHHHHHhhcCCCC-C-HHHHHHHHHHHHHhCCCCceEEEeEEEe---------cCC-CHHHH----HHHHHHHH
Q 017179 237 AHNIETVEELQSAVRDHRA-N-FKQSLDVLMMAKDYVPAGTLTKTSIMLG---------CGE-TPDQV----VSTMEKVR 300 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~-t-~e~~L~vl~~ak~~~p~Gi~tkt~imvG---------lGE-T~ee~----~e~L~~Lr 300 (376)
- |+|... + .+...++++.|++. |+++..++=-| +|+ |.|-+ +++++.|.
T Consensus 106 R------------INPGNig~~~~~v~~vv~~ak~~---~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 106 R------------INPGNIGKRDERVREVVEAAKDY---GIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred E------------ECCCCCCchHHHHHHHHHHHHHC---CCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3 333222 2 46677888899984 56655554333 344 55443 35667888
Q ss_pred HcCCcEEEee
Q 017179 301 AAGVDVMTFG 310 (376)
Q Consensus 301 el~vd~v~~~ 310 (376)
+++++-+-+.
T Consensus 171 ~~~f~~iviS 180 (360)
T PRK00366 171 ELGFDDIKIS 180 (360)
T ss_pred HCCCCcEEEE
Confidence 8998765554
No 379
>PLN02591 tryptophan synthase
Probab=67.98 E-value=1.2e+02 Score=29.25 Aligned_cols=124 Identities=16% Similarity=0.192 Sum_probs=71.8
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIET 242 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEt 242 (376)
.+-.+.+++.|++-++| +|+| .+...++++..++.. --.|.+..|.. +++.++.+.+..-..+ ..
T Consensus 96 ~~F~~~~~~aGv~Gvii-----pDLP---~ee~~~~~~~~~~~g-l~~I~lv~Ptt--~~~ri~~ia~~~~gFI----Y~ 160 (250)
T PLN02591 96 DKFMATIKEAGVHGLVV-----PDLP---LEETEALRAEAAKNG-IELVLLTTPTT--PTERMKAIAEASEGFV----YL 160 (250)
T ss_pred HHHHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHHHcC-CeEEEEeCCCC--CHHHHHHHHHhCCCcE----EE
Confidence 34466677888888776 4776 455666666665542 23555566765 5666777766532222 21
Q ss_pred hHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCC-HHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 243 VEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGET-PDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 243 v~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET-~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.. .-+.+ +.....+..+.++.+|+. +..-+++|||-+ .|++.+ +.+.|.|-+-+|-.+
T Consensus 161 Vs~--~GvTG~~~~~~~~~~~~i~~vk~~------~~~Pv~vGFGI~~~e~v~~----~~~~GADGvIVGSal 221 (250)
T PLN02591 161 VSS--TGVTGARASVSGRVESLLQELKEV------TDKPVAVGFGISKPEHAKQ----IAGWGADGVIVGSAM 221 (250)
T ss_pred eeC--CCCcCCCcCCchhHHHHHHHHHhc------CCCceEEeCCCCCHHHHHH----HHhcCCCEEEECHHH
Confidence 110 00111 112234455667777772 456788999877 666544 667888988887443
No 380
>PRK08999 hypothetical protein; Provisional
Probab=67.97 E-value=60 Score=31.57 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCCCC-CCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 280 SIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYMRP-SKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 280 ~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~~P-~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.++|. ..+.+|+.+ ..+.++|++.|++++.. ++... +|-..+.++++........+|-|
T Consensus 226 ~~~ig~S~h~~~~~~~----a~~~~~dyi~~gpvf~t~tk~~~------~~~g~~~~~~~~~~~~~Pv~AiG 287 (312)
T PRK08999 226 GRWVAASCHDAEELAR----AQRLGVDFAVLSPVQPTASHPGA------APLGWEGFAALIAGVPLPVYALG 287 (312)
T ss_pred CCEEEEecCCHHHHHH----HHhcCCCEEEECCCcCCCCCCCC------CCCCHHHHHHHHHhCCCCEEEEC
Confidence 457787 788887644 34579999999988732 22221 12234445555544445555554
No 381
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.96 E-value=23 Score=33.66 Aligned_cols=69 Identities=9% Similarity=0.136 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
++.+.++.+.+.|+.++++|+.+++... .|.+ .++++.+.+. +.. +- ..+... +.+.+..+.+.|++.+
T Consensus 147 ~~~e~~~~l~~~g~~~ii~tdI~~dGt~-~G~d--~el~~~~~~~-~~~-vi-asGGv~-s~~Dl~~l~~~G~~gv 215 (232)
T PRK13586 147 EVIDGIKKVNELELLGIIFTYISNEGTT-KGID--YNVKDYARLI-RGL-KE-YAGGVS-SDADLEYLKNVGFDYI 215 (232)
T ss_pred CHHHHHHHHHhcCCCEEEEecccccccC-cCcC--HHHHHHHHhC-CCC-EE-EECCCC-CHHHHHHHHHCCCCEE
Confidence 5667788888999999999999987543 2322 4567777654 444 32 234332 6788888988887754
No 382
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.81 E-value=19 Score=36.25 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++++|.++.++.+.+.|+++|.++++..............+.++.+++.. +.+.|- ..+.+. +.+..+.+.+.|+|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi-~~Ggi~-t~e~ae~~l~~gaD~ 309 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLI-AVGSIN-TPDDALEALETGADL 309 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEE-EECCCC-CHHHHHHHHHcCCCh
Confidence 67889999999999999999999987532211100000223444455433 233332 334443 567777777779998
Q ss_pred cccccc--chHHHHHhhc
Q 017179 236 FAHNIE--TVEELQSAVR 251 (376)
Q Consensus 236 i~h~lE--tv~~l~~~vr 251 (376)
+..+=- ..+.+..++.
T Consensus 310 V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 310 VAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHHhHHHHhCccHHHHHH
Confidence 776511 2235555554
No 383
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=67.77 E-value=50 Score=30.84 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHH
Q 017179 166 AEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEE 245 (376)
Q Consensus 166 a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~ 245 (376)
+....+.|..+|-.--+.-+|....|...+.++.+.+++. ++..+++.+.++ +...+.....+|+|.+... .+
T Consensus 115 a~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~--~~~tkil~As~r-~~~ei~~a~~~Gad~vTv~----~~ 187 (211)
T cd00956 115 ALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNY--GFDTKILAASIR-NPQHVIEAALAGADAITLP----PD 187 (211)
T ss_pred HHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHc--CCCceEEecccC-CHHHHHHHHHcCCCEEEeC----HH
Confidence 3445566888866555544555445666666766666554 345566888776 5666777778999988553 36
Q ss_pred HHHhhc
Q 017179 246 LQSAVR 251 (376)
Q Consensus 246 l~~~vr 251 (376)
++++|.
T Consensus 188 vl~~l~ 193 (211)
T cd00956 188 VLEQLL 193 (211)
T ss_pred HHHHHh
Confidence 666665
No 384
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=67.76 E-value=17 Score=36.33 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+.+.+.++.+.+.|++-|.|=|+..++..| .| -.-+...|+.||+.+|++.|
T Consensus 50 r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~v 112 (320)
T cd04823 50 RLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGI 112 (320)
T ss_pred eeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 4789999999999999999999999983222222 11 12478899999999998765
No 385
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=67.68 E-value=31 Score=33.63 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLNV 235 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld~ 235 (376)
+++.+.+.++++.+.|++.|.|-=-..-- -...+.++++.+++..|++.+++ ..-++. +....+. -.++|++.
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~----~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~la-A~~aGa~~ 219 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGIL----SPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLA-AVKAGIKG 219 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCC----CHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHH-HHHhCCCE
Confidence 57899999999999999998874111111 14568899999998888877764 333331 1122333 34788887
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+.-
T Consensus 220 vd~ 222 (280)
T cd07945 220 LHT 222 (280)
T ss_pred EEE
Confidence 654
No 386
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=67.64 E-value=1.2e+02 Score=30.66 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE--ecCCCCC-ChH-HHHHHHHcCcccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG-NNG-CVREVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~--l~pd~~g-~~e-~l~~L~~aGld~i~h 238 (376)
.+.|+...+.|+--. +.++ +-.+.+ .+ +.+.++.+++..|+..+-+ ..+...+ +.+ ..+.+...++|.+..
T Consensus 80 ~~La~~a~~~G~~~~-~Gs~-~~~~~~--~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l 154 (352)
T PRK05437 80 RKLAEAAEELGIAMG-VGSQ-RAALKD--PE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQI 154 (352)
T ss_pred HHHHHHHHHcCCCeE-eccc-HhhccC--hh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE
Confidence 556677777776433 2222 211222 23 6778888888877665433 2222211 233 334444456676666
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
++....++...- ...+++.+++.++.+++..+--+.+| ++|.|-| .+..+.|.+.|+|.|.++.
T Consensus 155 ~l~~~qe~~~p~--g~~~f~~~le~i~~i~~~~~vPVivK---~~g~g~s----~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 155 HLNPLQELVQPE--GDRDFRGWLDNIAEIVSALPVPVIVK---EVGFGIS----KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred eCccchhhcCCC--CcccHHHHHHHHHHHHHhhCCCEEEE---eCCCCCc----HHHHHHHHHcCCCEEEECC
Confidence 653222221111 22368888999999988531112344 2477767 4566777889999999853
No 387
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=67.49 E-value=40 Score=32.11 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=48.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC-cccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVF 236 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ld~i 236 (376)
+..++...++.+.+.|++.|++|+.+++... .|. ..++++++++.. .+.|-+ .+... +.+.+..+.+.| +|.+
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~-~g~--~~~~~~~i~~~~-~ipvia-~GGi~-s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTK-SGY--DLELTKAVSEAV-KIPVIA-SGGAG-KPEHFYEAFTKGKADAA 226 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCC-CCC--CHHHHHHHHHhC-CCCEEE-eCCCC-CHHHHHHHHHcCCccee
Confidence 3566788889999999999999998764332 222 356777777764 344432 23332 677788888776 7765
No 388
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.44 E-value=31 Score=33.45 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++.+.+.++++.++|++.|.|-=-..-- -...+.++++.|++..|++.|++ ..-++.--......-.++|++.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~ 221 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDEISLGDTIGVA----TPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRR 221 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCcc----CHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 478999999999999999998873111111 14568899999999888777765 3333311122223344788887
Q ss_pred ccc
Q 017179 236 FAH 238 (376)
Q Consensus 236 i~h 238 (376)
+..
T Consensus 222 id~ 224 (274)
T cd07938 222 FDS 224 (274)
T ss_pred EEE
Confidence 654
No 389
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=67.40 E-value=26 Score=33.42 Aligned_cols=24 Identities=17% Similarity=0.053 Sum_probs=16.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCC
Q 017179 281 IMLGCGETPDQVVSTMEKVRAAGV 304 (376)
Q Consensus 281 imvGlGET~ee~~e~L~~Lrel~v 304 (376)
+|.=+-|...+..++++.+++.|.
T Consensus 94 ~It~H~Ea~~~~~~~l~~Ik~~g~ 117 (228)
T PRK08091 94 IVTLQVEQTHDLALTIEWLAKQKT 117 (228)
T ss_pred EEEEcccCcccHHHHHHHHHHCCC
Confidence 333345766778888888888875
No 390
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=67.35 E-value=18 Score=36.23 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=42.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+++.+.++.+.+.|++.|.|=|+. +..| .| -.-+...|+.||+.+|++.|
T Consensus 55 r~s~d~l~~~v~~~~~~Gi~av~LFgv~--~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~v 115 (323)
T PRK09283 55 RLSIDLLVKEAEEAVELGIPAVALFGVP--ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGV 115 (323)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCcC--CCCCcccccccCCCCHHHHHHHHHHHhCCCcEE
Confidence 3789999999999999999999999982 2222 11 12378899999999998765
No 391
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.22 E-value=31 Score=32.15 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++++.+.++.+.+.|++.|.|- |.-.. .....+.++++.+++..|.+.|++ ..-++.--......-.++|++.
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~--Dt~G~--~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLA--DTVGI--MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEE--ETTS---S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred ccHHHHHHHHHHHHHcCCeEEEee--CccCC--cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 568999999999999999998774 11111 114578899999999998877775 3333311122223344689887
Q ss_pred cccc
Q 017179 236 FAHN 239 (376)
Q Consensus 236 i~h~ 239 (376)
+...
T Consensus 210 id~t 213 (237)
T PF00682_consen 210 IDGT 213 (237)
T ss_dssp EEEB
T ss_pred EEcc
Confidence 6443
No 392
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=67.13 E-value=93 Score=31.16 Aligned_cols=85 Identities=15% Similarity=0.300 Sum_probs=49.4
Q ss_pred HHHHHHHcCccccccccc-c--hHHHH-HhhcCC----CCCHH----HHHHHHHHHHHhCCCCceEEEeEEEec------
Q 017179 224 CVREVAKSGLNVFAHNIE-T--VEELQ-SAVRDH----RANFK----QSLDVLMMAKDYVPAGTLTKTSIMLGC------ 285 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lE-t--v~~l~-~~vr~r----~~t~e----~~L~vl~~ak~~~p~Gi~tkt~imvGl------ 285 (376)
..+..+++|.|.+..+.- . ...++ +.++.| +.+.+ -.+++++.+++..+..+.++.- +|.
T Consensus 146 AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iR--l~~~~~~~~ 223 (343)
T cd04734 146 AARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIR--ISGDEDTEG 223 (343)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEE--eehhhccCC
Confidence 345566778877755421 1 11111 122212 23443 3457777788765432333222 222
Q ss_pred CCCHHHHHHHHHHHHHcC-CcEEEee
Q 017179 286 GETPDQVVSTMEKVRAAG-VDVMTFG 310 (376)
Q Consensus 286 GET~ee~~e~L~~Lrel~-vd~v~~~ 310 (376)
|.|.+|.++.++.|.+.+ +|++++.
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 578899999999999998 8999883
No 393
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=67.11 E-value=1.8e+02 Score=30.98 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=89.4
Q ss_pred CchhH-HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHh---------hCCCcEEEEecCCCCCChHHHHH
Q 017179 158 DPDEP-TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKE---------LKPNMLIEALVPDFRGNNGCVRE 227 (376)
Q Consensus 158 ~~eEi-~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~---------~~p~i~Ie~l~pd~~g~~e~l~~ 227 (376)
++++. .+..+.+.+.++..+.++-.+. .+ .|.-...++++.+.. ...++.+.+-++-.....+.++.
T Consensus 179 ~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~L--vGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~ 255 (505)
T PLN02274 179 PAGIDLEEAEAVLKDSKKGKLPLVNEDG-EL--VDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEH 255 (505)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCC-eE--EEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHH
Confidence 34333 4445566777888887763211 11 122223444544432 11245566544432224688999
Q ss_pred HHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEE
Q 017179 228 VAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 228 L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v 307 (376)
|.++|+|++.. ++. .++ -...++.++.+|+.+|+ +. +|.|=--|.++... +.+.|+|.|
T Consensus 256 l~~ag~d~i~i--D~~---------~g~-~~~~~~~i~~ik~~~p~-~~----vi~g~v~t~e~a~~----a~~aGaD~i 314 (505)
T PLN02274 256 LVKAGVDVVVL--DSS---------QGD-SIYQLEMIKYIKKTYPE-LD----VIGGNVVTMYQAQN----LIQAGVDGL 314 (505)
T ss_pred HHHcCCCEEEE--eCC---------CCC-cHHHHHHHHHHHHhCCC-Cc----EEEecCCCHHHHHH----HHHcCcCEE
Confidence 99999999865 321 133 34556888999987775 32 33333357777544 456899998
Q ss_pred EeecCCCCC----CCC-CCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 308 TFGQYMRPS----KRH-MPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 308 ~~~qY~~P~----~~~-~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
-++ +-|+ .+. ..+ .+.....+..+.+++...+...++.|
T Consensus 315 ~vg--~g~G~~~~t~~~~~~-g~~~~~~i~~~~~~~~~~~vpVIadG 358 (505)
T PLN02274 315 RVG--MGSGSICTTQEVCAV-GRGQATAVYKVASIAAQHGVPVIADG 358 (505)
T ss_pred EEC--CCCCccccCcccccc-CCCcccHHHHHHHHHHhcCCeEEEeC
Confidence 765 2232 111 111 11123356667777766666556655
No 394
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=67.09 E-value=60 Score=33.35 Aligned_cols=119 Identities=9% Similarity=0.113 Sum_probs=69.5
Q ss_pred cccHHHHHHHHHHHHhhCCCcEEEEec-CCCC--CChHHHHHHHHcCcccccccccchH-HHHHhhcC-CCCCHHHHHHH
Q 017179 189 DQGSGHFAQTVRKLKELKPNMLIEALV-PDFR--GNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRD-HRANFKQSLDV 263 (376)
Q Consensus 189 d~g~~~~~elvr~Ik~~~p~i~Ie~l~-pd~~--g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~-r~~t~e~~L~v 263 (376)
|.|.+.|++.++.+++.+|++.+-+.+ ..+. .-.+.++.+.++|+|.+..|+-.-+ .-.+.+.. -..+.+..-++
T Consensus 94 ~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i 173 (385)
T PLN02495 94 DRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEV 173 (385)
T ss_pred ccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHH
Confidence 345777777788887777665444444 2120 0134566777888888877764322 00011100 12445666666
Q ss_pred HHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 264 LMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 264 l~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
++.+++. ++.-+++=++=...++.+..+.+.+.+.|-|.+.+=+
T Consensus 174 ~~~Vk~~------~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 174 CGWINAK------ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHh------hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 6777663 1223444444455678888999999999988776644
No 395
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=67.01 E-value=1e+02 Score=29.85 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc-ccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIE 241 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h-~lE 241 (376)
.+-.+.+++.|++-++| +|++ .+...+++..+++.. --.|-.+.|.. ..+.++.+.+...+.+-. .+-
T Consensus 107 e~f~~~~~~aGvdGvii-----pDLp---~ee~~~~~~~~~~~g-l~~I~lvap~t--~~eri~~i~~~s~gfIY~vs~~ 175 (258)
T PRK13111 107 ERFAADAAEAGVDGLII-----PDLP---PEEAEELRAAAKKHG-LDLIFLVAPTT--TDERLKKIASHASGFVYYVSRA 175 (258)
T ss_pred HHHHHHHHHcCCcEEEE-----CCCC---HHHHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHhCCCcEEEEeCC
Confidence 34566777889988887 4776 455666777776642 23555567765 567777777765443311 111
Q ss_pred chHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC-CHHHHHHHHHHHHHcCCcEEEeec
Q 017179 242 TVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 242 tv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGE-T~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
.+-.. + ........+.++.+++. +..-+++|+|- +.+++.+.+. . .|-+-+|.
T Consensus 176 GvTG~----~--~~~~~~~~~~i~~vk~~------~~~pv~vGfGI~~~e~v~~~~~----~-ADGviVGS 229 (258)
T PRK13111 176 GVTGA----R--SADAADLAELVARLKAH------TDLPVAVGFGISTPEQAAAIAA----V-ADGVIVGS 229 (258)
T ss_pred CCCCc----c--cCCCccHHHHHHHHHhc------CCCcEEEEcccCCHHHHHHHHH----h-CCEEEEcH
Confidence 11000 0 11123344567777762 24567899988 6677766553 3 67777763
No 396
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=66.85 E-value=22 Score=32.97 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..+.+.++.+.+.|+++++++..+++... .|. -.++++++.+.. .+.+-+.-+-. +.+.++.+++.|++.+-.
T Consensus 145 ~~~~~~~~~~~~~g~~~ii~~~~~~~g~~-~g~--~~~~i~~i~~~~-~ipvia~GGi~--~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 145 VSLEELAKRLEELGLEGIIYTDISRDGTL-SGP--NFELTKELVKAV-NVPVIASGGVS--SIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeecCCCCc-CCC--CHHHHHHHHHhC-CCCEEEeCCCC--CHHHHHHHHHCCCCEEEE
Confidence 45567788889999999999988875432 232 256777777653 34443322222 678888888999887644
No 397
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=66.68 E-value=1e+02 Score=36.27 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=84.7
Q ss_pred CCchhHHHHHHHHHHC--CCcEEEEEeeeCCCCCc--ccHHHHHHHHHHHHhhCCCcEEEEecCCC--CC----C----h
Q 017179 157 PDPDEPTNVAEAIASW--GLDYVVITSVDRDDLAD--QGSGHFAQTVRKLKELKPNMLIEALVPDF--RG----N----N 222 (376)
Q Consensus 157 l~~eEi~~~a~al~~~--G~~eIvLTsg~r~dl~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~--~g----~----~ 222 (376)
+..++++.+|.++.+. |+-.+-+.||-.-|..- .+ +.=.+-++.+++..|++.+..|+-.- .| . .
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~-EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~ 628 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLH-EDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVK 628 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhc-CCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHH
Confidence 6788999999999884 99999889885322110 00 00135688899989999988776321 11 1 3
Q ss_pred HHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe------c--CCCHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG------C--GETPDQVVS 294 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG------l--GET~ee~~e 294 (376)
..++..++.|+|++-. |..++ ..+.-...++.+++ .|..+...|.+- . --|.+-+++
T Consensus 629 ~f~~~~~~~Gidifri--------fD~lN----~~~n~~~~~~~~~~---~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~ 693 (1143)
T TIGR01235 629 YFVKQAAQGGIDIFRV--------FDSLN----WVENMRVGMDAVAE---AGKVVEAAICYTGDILDPARPKYDLKYYTN 693 (1143)
T ss_pred HHHHHHHHcCCCEEEE--------CccCc----CHHHHHHHHHHHHH---cCCEEEEEEEEeccCCCcCCCCCCHHHHHH
Confidence 4456667888887754 33333 23444455566666 344555555542 1 224666777
Q ss_pred HHHHHHHcCCcEEEe
Q 017179 295 TMEKVRAAGVDVMTF 309 (376)
Q Consensus 295 ~L~~Lrel~vd~v~~ 309 (376)
..+.|.+.|+|.+.|
T Consensus 694 ~ak~l~~~Gad~I~i 708 (1143)
T TIGR01235 694 LAVELEKAGAHILGI 708 (1143)
T ss_pred HHHHHHHcCCCEEEE
Confidence 777777777777766
No 398
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.57 E-value=34 Score=33.48 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (376)
.+++.+.+.++++.+.|++.|.|-=-..- .-...+.++++.|++..|++.|++ ..-++. +....+. -.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~----~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~la-A~~aG~~ 226 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGV----GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYA-SLEEGIT 226 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCc----cCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 57899999999999999999887311111 114568899999998887666654 333331 1123333 3478988
Q ss_pred ccccc
Q 017179 235 VFAHN 239 (376)
Q Consensus 235 ~i~h~ 239 (376)
.+.-.
T Consensus 227 ~id~s 231 (287)
T PRK05692 227 VFDAS 231 (287)
T ss_pred EEEEE
Confidence 77554
No 399
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=66.49 E-value=1.1e+02 Score=28.26 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc---c
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN---I 240 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~---l 240 (376)
+.++++.+.|++.|++-+...+ .+++ ....++++.+++. +++.+- .+-. +.+.+..+.++|+|.+..+ .
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~-~p~~--~~~~~~i~~~~~~-~~i~vi--~~v~--t~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRP-RPDG--ETLAELVKRIKEY-PGQLLM--ADCS--TLEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-CCCC--CCHHHHHHHHHhC-CCCeEE--EeCC--CHHHHHHHHHcCCCEEEcCCcee
Confidence 4567888999996665443221 1110 2356788888775 555443 2222 5677888999999988543 2
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCC-CHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGE-TPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGE-T~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
+.... .. ....++.++.+++.. ..-++.+.|- |.+++.+.+ +.|.|.+-+|..
T Consensus 151 t~~~~----~~-----~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~l----~~GadgV~iGsa 204 (221)
T PRK01130 151 TEETK----KP-----EEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKAL----ELGAHAVVVGGA 204 (221)
T ss_pred ecCCC----CC-----CCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHHH----HCCCCEEEEchH
Confidence 21110 01 111245666666632 3447777777 676666544 478999988844
No 400
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=66.45 E-value=24 Score=32.65 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
..++.+.++.+.++|++++++++.+++... .|. -.++++++++..+ +.|-+ .++.. +.+.+..+.+.|++.+-.
T Consensus 145 ~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~g~--~~~~i~~i~~~~~-ipvi~-~GGi~-~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 145 EVSLEELAKRFEELGVKAIIYTDISRDGTL-SGP--NFELYKELAAATG-IPVIA-SGGVS-SLDDIKALKELGVAGVIV 218 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCcc-CCC--CHHHHHHHHHhcC-CCEEE-ecCCC-CHHHHHHHHHCCCCEEEE
Confidence 456677888899999999999988765432 222 2567888876542 33322 22222 567788888889887655
Q ss_pred c
Q 017179 239 N 239 (376)
Q Consensus 239 ~ 239 (376)
+
T Consensus 219 g 219 (234)
T cd04732 219 G 219 (234)
T ss_pred e
Confidence 3
No 401
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=66.39 E-value=39 Score=32.65 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (376)
-+++.+.+.++++.+.|++.|.|-=-..-.. ...+.++++.+++..|++.+++ +..++. +....+..+ ++|++
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~-~aGa~ 222 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLCDTNGGTL----PHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAV-EAGAT 222 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCC----HHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHH-HcCCC
Confidence 3578888999999999999887631111111 3568889999998888777765 333432 123334444 68888
Q ss_pred cccc
Q 017179 235 VFAH 238 (376)
Q Consensus 235 ~i~h 238 (376)
.+..
T Consensus 223 ~id~ 226 (273)
T cd07941 223 QVQG 226 (273)
T ss_pred EEEE
Confidence 7654
No 402
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=66.19 E-value=1.5e+02 Score=30.55 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEe--cCCCCCChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEAL--VPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l--~pd~~g~~e~l~~L~~aGld 234 (376)
.++++.++.++++.+.|++.|.+. .+.. .....+.|++|++.++...|-.- +-+. ....++...++|+|
T Consensus 13 ~~~~~~~~~~~~~~~~Gv~~ie~g------~p~~-~~~~~~~i~~l~~~~~~~~ii~D~kl~d~--g~~~v~~a~~aGAd 83 (430)
T PRK07028 13 LELDRAVEIAKEAVAGGADWIEAG------TPLI-KSEGMNAIRTLRKNFPDHTIVADMKTMDT--GAIEVEMAAKAGAD 83 (430)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEeC------CHHH-HHhhHHHHHHHHHHCCCCEEEEEeeeccc--hHHHHHHHHHcCCC
Confidence 577888899999899999998752 1110 12346778888877653222110 0011 12367888999999
Q ss_pred cccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEe-cC-CCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 235 VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLG-CG-ETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 235 ~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvG-lG-ET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
.+...-+.. .....++++.+++ .|+. +++| +. +|..+. ++.+.+.++|++.++.
T Consensus 84 gV~v~g~~~-------------~~~~~~~i~~a~~---~G~~----~~~g~~s~~t~~e~---~~~a~~~GaD~I~~~p 139 (430)
T PRK07028 84 IVCILGLAD-------------DSTIEDAVRAARK---YGVR----LMADLINVPDPVKR---AVELEELGVDYINVHV 139 (430)
T ss_pred EEEEecCCC-------------hHHHHHHHHHHHH---cCCE----EEEEecCCCCHHHH---HHHHHhcCCCEEEEEe
Confidence 776311111 1123456677777 3443 3444 22 554333 4555678899998763
No 403
>PLN02591 tryptophan synthase
Probab=66.09 E-value=47 Score=31.98 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhcc
Q 017179 290 DQVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVAS 348 (376)
Q Consensus 290 ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~s 348 (376)
||..+....+++++++.|.+. .|+ + ++++.+.+.+. +-||.|+.|
T Consensus 118 ee~~~~~~~~~~~gl~~I~lv---~Pt---t------~~~ri~~ia~~--~~gFIY~Vs 162 (250)
T PLN02591 118 EETEALRAEAAKNGIELVLLT---TPT---T------PTERMKAIAEA--SEGFVYLVS 162 (250)
T ss_pred HHHHHHHHHHHHcCCeEEEEe---CCC---C------CHHHHHHHHHh--CCCcEEEee
Confidence 444455555555555555442 231 1 23344444433 468888743
No 404
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=66.00 E-value=88 Score=30.54 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=82.1
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee--CCCCCcc------cHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChHHHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD--RDDLADQ------GSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNGCVREV 228 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~--r~dl~d~------g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e~l~~L 228 (376)
++++..+.++.+.+.|++.|-|=-+- ....... ..+.+.++++.+++... -+.+. +.|++....+.++.+
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK-l~~~~~~~~~~a~~~ 189 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAK-LTPNITDIREIARAA 189 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEE-CCCCchhHHHHHHHH
Confidence 46889999999988899888773321 1000110 14678899999987541 14555 456653235667778
Q ss_pred HHcCcccccc-c-------c--cchHH---HHH-----hhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCC
Q 017179 229 AKSGLNVFAH-N-------I--ETVEE---LQS-----AVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GET 288 (376)
Q Consensus 229 ~~aGld~i~h-~-------l--Etv~~---l~~-----~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET 288 (376)
.++|+|.+.. | + |+..- +.. -+. ..+...-.++.+..+++..+..+. |+|- -.+
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s-G~a~~p~~l~~v~~~~~~~~~~ip-----Iig~GGI~~ 263 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS-GPAVKPIALRAVSQIARAPEPGLP-----ISGIGGIES 263 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCccc-CCCcchHHHHHHHHHHHhcCCCCc-----EEEECCCCC
Confidence 8999997642 1 1 22110 000 111 122345568888888886521132 2223 378
Q ss_pred HHHHHHHHHHHHHcCCcEEEee
Q 017179 289 PDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 289 ~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
.+|+++.|. .|.+.|-++
T Consensus 264 ~~da~~~l~----aGA~~V~i~ 281 (299)
T cd02940 264 WEDAAEFLL----LGASVVQVC 281 (299)
T ss_pred HHHHHHHHH----cCCChheEc
Confidence 888888763 777776664
No 405
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.97 E-value=1.4e+02 Score=29.39 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeC----CCCCccc------HHHHHHHHHHHHhhCC-CcEEEEecC---CCCCCh
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDR----DDLADQG------SGHFAQTVRKLKELKP-NMLIEALVP---DFRGNN 222 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r----~dl~d~g------~~~~~elvr~Ik~~~p-~i~Ie~l~p---d~~g~~ 222 (376)
-+++++.+.|+.+.+.|++.|-|-.+-. .+ ..+| .+.+.++++++++..+ -+.+.+-.+ +.....
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~-~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~ 150 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITK-KGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAV 150 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcC-CCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHH
Confidence 4789999999999999999998876631 11 1122 2456788888887642 133333222 110024
Q ss_pred HHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHc
Q 017179 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAA 302 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel 302 (376)
+.++.+.++|+|.+...--+.. .+++-.-.++.++.+++..+ +++ +..|=-.|.+++.+.+ +..
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~--------~~~~~~~~~~~i~~i~~~~~--ipv---i~nGgI~~~~da~~~l---~~~ 214 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRA--------QGYSGEANWDIIARVKQAVR--IPV---IGNGDIFSPEDAKAML---ETT 214 (319)
T ss_pred HHHHHHHHhCCCEEEEEccccc--------ccCCCchhHHHHHHHHHcCC--CcE---EEeCCCCCHHHHHHHH---Hhh
Confidence 5667788899988754311111 11111223677777777432 222 2223346777777766 346
Q ss_pred CCcEEEeecC
Q 017179 303 GVDVMTFGQY 312 (376)
Q Consensus 303 ~vd~v~~~qY 312 (376)
++|.|-++.-
T Consensus 215 gad~VmigR~ 224 (319)
T TIGR00737 215 GCDGVMIGRG 224 (319)
T ss_pred CCCEEEEChh
Confidence 8999888754
No 406
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=65.96 E-value=56 Score=32.45 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCceE--EEeEE--EecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 259 QSLDVLMMAKDYVPAGTLT--KTSIM--LGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 259 ~~L~vl~~ak~~~p~Gi~t--kt~im--vGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
-.+++++.+++..+.++.+ +.+.. .--|.+.+|.++.++.|.+.++|++.+.
T Consensus 206 f~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 206 FLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4467788888876544433 33321 1126789999999999999999999975
No 407
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=65.69 E-value=1.2e+02 Score=29.57 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEe--eeC--CCCC---cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITS--VDR--DDLA---DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTs--g~r--~dl~---d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
-+++|+.+.++...+.|++.|-+-. +.. .+.+ ....+.+..+++..++..-.+.+++. ....+..+.
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~------~~~~i~~~l 190 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY------GAEAIRRAI 190 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHH
Confidence 4578889999999899998776543 210 0100 01145677777777665322444432 235577788
Q ss_pred HcCcccccccccchHHHHHhhc
Q 017179 230 KSGLNVFAHNIETVEELQSAVR 251 (376)
Q Consensus 230 ~aGld~i~h~lEtv~~l~~~vr 251 (376)
++|.+.+.|..-..++.++.|.
T Consensus 191 ~~G~~~i~H~~~~~~~~~~~l~ 212 (342)
T cd01299 191 RAGVDTIEHGFLIDDETIELMK 212 (342)
T ss_pred HcCCCEEeecCCCCHHHHHHHH
Confidence 8999999987554445544444
No 408
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=65.66 E-value=1.4e+02 Score=29.33 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=94.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFA 237 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~ 237 (376)
+.+.+..+++++.+.+.--|+-++... +...|...+..+++.+.+.. .+.|. +.-|+..+.+.+..-.++|.+++
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~~~~~--~~~~g~~~~~~~~~~~A~~~-~vPV~-lHLDH~~~~e~i~~Ai~~GftSV- 101 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQIAPTN--AQLSGYDYIYEIVKRHADKM-DVPVS-LHLDHGKTFEDVKQAVRAGFTSV- 101 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECcHhH--HhhCCHHHHHHHHHHHHHHC-CCCEE-EECcCCCCHHHHHHHHHcCCCEE-
Confidence 466677778888887776665444322 22234677888888887765 34333 44455446777888888887655
Q ss_pred ccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC--------HHHHHHHHHHHHHcCCcEE
Q 017179 238 HNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET--------PDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 238 h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET--------~ee~~e~L~~Lrel~vd~v 307 (376)
+++.+..=| ..+.+...++.+.|+. .|+.+ --+.+-|- |. .-+..+..+++++.|+|.+
T Consensus 102 -M~DgS~l~~------eeNi~~T~~vve~Ah~---~gv~VEaElG~vgg~-ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L 170 (283)
T PRK07998 102 -MIDGAALPF------EENIAFTKEAVDFAKS---YGVPVEAELGAILGK-EDDHVSEADCKTEPEKVKDFVERTGCDML 170 (283)
T ss_pred -EEeCCCCCH------HHHHHHHHHHHHHHHH---cCCEEEEEeccCCCc-cccccccccccCCHHHHHHHHHHhCcCee
Confidence 334433101 1234556788888888 36554 33333222 11 1255677899999999987
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
-+. | +.-|-.-.. +.-.|++++++....+...|
T Consensus 171 Ava-i---Gt~HG~Y~~--p~l~~~~l~~I~~~~~vPLV 203 (283)
T PRK07998 171 AVS-I---GNVHGLEDI--PRIDIPLLKRIAEVSPVPLV 203 (283)
T ss_pred ehh-c---cccccCCCC--CCcCHHHHHHHHhhCCCCEE
Confidence 663 1 112221111 11135666666665555443
No 409
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.61 E-value=37 Score=33.47 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+.+.++.+.|.++|.|- . .+.+.+.+.++.+++..|++.+++.-+ . +.+.+..+++.|+|++..+
T Consensus 207 eea~eA~~~GaD~I~LD-----n---~~~e~l~~av~~~~~~~~~i~leAsGG-I--t~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 207 EQVQEALEYGADIIMLD-----N---MPVDLMQQAVQLIRQQNPRVKIEASGN-I--TLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHHcCCCEEEEC-----C---CCHHHHHHHHHHHHhcCCCeEEEEECC-C--CHHHHHHHHHcCCCEEEEc
Confidence 34445557888888763 1 235667888888877678888776543 3 7889999999999998664
No 410
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=65.41 E-value=85 Score=29.73 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
..+++++...|.+...+|++-|-|- +.... .+ .++++++++...++.+. .+.-..+.+.++.+.++|+|.
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe-~SG~~-~~------~e~I~~v~~~~~~~pl~--vGGGIrs~e~a~~l~~aGAD~ 200 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLE-YSGAY-GP------PEVVRAVKKVLGDTPLI--VGGGIRSGEQAKEMAEAGADT 200 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeC-CCCCc-CC------HHHHHHHHHhcCCCCEE--EeCCCCCHHHHHHHHHcCCCE
Confidence 5789999999999999997666554 22211 11 45777777754234333 222122789999999999998
Q ss_pred cccc
Q 017179 236 FAHN 239 (376)
Q Consensus 236 i~h~ 239 (376)
+-.+
T Consensus 201 VVVG 204 (219)
T cd02812 201 IVVG 204 (219)
T ss_pred EEEC
Confidence 7554
No 411
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.83 E-value=1.3e+02 Score=28.66 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeee-CCCC----CcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVD-RDDL----ADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~-r~dl----~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
..+++++.+.|+++.+.|.+.|-|=++. +++. .+...+.+..+|+.|++.. ++.|.+=+ + +.+.++.-.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT--~--~~~v~~aaL~ 94 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDT--F--NAEVAEAALK 94 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeC--C--cHHHHHHHHH
Confidence 3689999999999999999999875543 4432 1123456778888887643 34443322 2 4667777777
Q ss_pred cCcccccc
Q 017179 231 SGLNVFAH 238 (376)
Q Consensus 231 aGld~i~h 238 (376)
+|.+.++-
T Consensus 95 ~g~~iINd 102 (258)
T cd00423 95 AGADIIND 102 (258)
T ss_pred hCCCEEEe
Confidence 77666544
No 412
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=64.64 E-value=36 Score=34.11 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHHCC--CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 158 DPDEPTNVAEAIASWG--LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G--~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
++++. +.+.++.+.| .+.|++-.- .+-.....+.|+.|++.+|...| +.+.. ++.+..+.|.++|+|.
T Consensus 92 t~e~~-~r~~~lv~a~~~~d~i~~D~a------hg~s~~~~~~i~~i~~~~p~~~v--i~GnV-~t~e~a~~l~~aGad~ 161 (321)
T TIGR01306 92 KACEY-EFVTQLAEEALTPEYITIDIA------HGHSNSVINMIKHIKTHLPDSFV--IAGNV-GTPEAVRELENAGADA 161 (321)
T ss_pred CHHHH-HHHHHHHhcCCCCCEEEEeCc------cCchHHHHHHHHHHHHhCCCCEE--EEecC-CCHHHHHHHHHcCcCE
Confidence 45554 4556677778 488877443 33367789999999998876432 33333 2678899999999998
Q ss_pred cccc-----ccchHHHHHhhcCCCCCHHHH-HHHHHHHHHhCCCCceEEEeEEE-ecCCCHHHHHHHHHHHHHcCCcEEE
Q 017179 236 FAHN-----IETVEELQSAVRDHRANFKQS-LDVLMMAKDYVPAGTLTKTSIML-GCGETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 236 i~h~-----lEtv~~l~~~vr~r~~t~e~~-L~vl~~ak~~~p~Gi~tkt~imv-GlGET~ee~~e~L~~Lrel~vd~v~ 308 (376)
+-.+ +-+... +..-+. ..| +..+..+++.. . ++ +|. |=-.+-.|+...|. +|.|.+-
T Consensus 162 I~V~~G~G~~~~tr~----~~g~g~--~~~~l~ai~ev~~a~-~-~p----VIadGGIr~~~Di~KALa----~GAd~Vm 225 (321)
T TIGR01306 162 TKVGIGPGKVCITKI----KTGFGT--GGWQLAALRWCAKAA-R-KP----IIADGGIRTHGDIAKSIR----FGASMVM 225 (321)
T ss_pred EEECCCCCcccccee----eeccCC--CchHHHHHHHHHHhc-C-Ce----EEEECCcCcHHHHHHHHH----cCCCEEe
Confidence 7533 222221 111111 111 45666666632 1 22 111 11356677776654 5999998
Q ss_pred eecCC
Q 017179 309 FGQYM 313 (376)
Q Consensus 309 ~~qY~ 313 (376)
++..+
T Consensus 226 ig~~~ 230 (321)
T TIGR01306 226 IGSLF 230 (321)
T ss_pred echhh
Confidence 88665
No 413
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=64.57 E-value=1e+02 Score=32.31 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=62.0
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchH
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE 244 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~ 244 (376)
.++.+.+.|++-|.|= ..++. ...+.+.++++++......+.+++-| .++...+.|++.+..+.|-.+
T Consensus 222 ~ve~aL~aGv~~VQLR---eK~ls---~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL~ 289 (437)
T PRK12290 222 WIERLLPLGINTVQLR---IKDPQ---QADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDLE 289 (437)
T ss_pred HHHHHHhCCCCEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHcc
Confidence 4777888999887663 12332 34566666666543222223445533 255556677777766544221
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 245 ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 245 ~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
...+++. ...++++|+ --+.+|+... .+.+.|++.+|+++
T Consensus 290 -------------------~~~aR~i------lg~~~iIGvStHs~eEl~~A----~~~gaDYI~lGPIF 330 (437)
T PRK12290 290 -------------------EANLAQL------TDAGIRLGLSTHGYYELLRI----VQIQPSYIALGHIF 330 (437)
T ss_pred -------------------hhhhhhh------cCCCCEEEEecCCHHHHHHH----hhcCCCEEEECCcc
Confidence 0111221 123467888 7788876443 35899999999887
No 414
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=64.56 E-value=77 Score=29.79 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHH
Q 017179 168 AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQ 247 (376)
Q Consensus 168 al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~ 247 (376)
...+.|..+|-.=-|.-+|..+.|..-+.++.+.++.....+ +++...|+ +.+.+..+..+|+|.+.... +++
T Consensus 117 ~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~t--kIlaAS~r-~~~~v~~~~~~G~d~vTip~----~vl 189 (213)
T TIGR00875 117 LAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDT--EVIAASVR-HPRHVLEAALIGADIATMPL----DVM 189 (213)
T ss_pred HHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCC--EEEEeccC-CHHHHHHHHHcCCCEEEcCH----HHH
Confidence 344557777765555434444445665666666665543334 45666676 66777777889999886542 566
Q ss_pred Hhhc
Q 017179 248 SAVR 251 (376)
Q Consensus 248 ~~vr 251 (376)
+++.
T Consensus 190 ~~l~ 193 (213)
T TIGR00875 190 QQLF 193 (213)
T ss_pred HHHH
Confidence 6654
No 415
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=64.40 E-value=40 Score=31.22 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC-ccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFA 237 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ld~i~ 237 (376)
..++.+.++++.+.|++++++++.+++... .|. -.++++++++..+ +.+-+. ++.. +.+.++.+.+.| ++.+-
T Consensus 145 ~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~-~G~--d~~~i~~l~~~~~-ipvia~-GGi~-~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 145 GVTAEDLAKRFEDAGVKAIIYTDISRDGTL-SGP--NVEATRELAAAVP-IPVIAS-GGVS-SLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeecCcCCc-CCC--CHHHHHHHHHhCC-CCEEEe-CCCC-CHHHHHHHHHcCCccEEE
Confidence 345667788888999999999998875433 232 2467777777543 333222 2222 677888888877 77554
Q ss_pred c
Q 017179 238 H 238 (376)
Q Consensus 238 h 238 (376)
.
T Consensus 219 v 219 (233)
T PRK00748 219 V 219 (233)
T ss_pred E
Confidence 3
No 416
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.36 E-value=39 Score=33.17 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
++.++++.+.|++.|.|- .+. .+.+.+.++.+++..|++.+++.-+ . +.+.+..+.+.|+|++..
T Consensus 198 leea~ea~~~GaDiI~lD-----n~~---~e~l~~~v~~l~~~~~~~~leasGG-I--~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD-----KFT---PQQLHHLHERLKFFDHIPTLAAAGG-I--NPENIADYIEAGIDLFIT 262 (277)
T ss_pred HHHHHHHHHcCcCEEEEC-----CCC---HHHHHHHHHHHhccCCCEEEEEECC-C--CHHHHHHHHhcCCCEEEe
Confidence 455666678888888763 232 5668888888877678888876443 3 788999999999998754
No 417
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=64.08 E-value=17 Score=36.30 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=42.7
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-c-c------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-Q-G------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~-g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+.+.+.++.+.++|++.|.|=|+......| . | -.-+.+.|+.||+.+|++.|
T Consensus 47 r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~v 110 (320)
T cd04824 47 RYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred eeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEE
Confidence 4889999999999999999999999984221111 1 1 12367899999999998765
No 418
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=63.99 E-value=1.1e+02 Score=29.93 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=84.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEee-eCCCCCcc-------------c--HHHHHHHHHHHHhhCCCcEEEE---ecCC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSV-DRDDLADQ-------------G--SGHFAQTVRKLKELKPNMLIEA---LVPD 217 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg-~r~dl~d~-------------g--~~~~~elvr~Ik~~~p~i~Ie~---l~pd 217 (376)
.+++.-++.++.+.+.|++-+=| |. --|-+.|| | .+...++++.+++..+.+.+-+ .-|-
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iEL-GvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi 106 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILEL-GVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI 106 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEe-cCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence 45788888899999999987766 33 12223333 1 3567788888887665554443 3343
Q ss_pred CC-CChHHHHHHHHcCcccccc---cccchHHHHHhhcC---------CCCCHHHHHHHHHHHHHhCCCCce--EEEeEE
Q 017179 218 FR-GNNGCVREVAKSGLNVFAH---NIETVEELQSAVRD---------HRANFKQSLDVLMMAKDYVPAGTL--TKTSIM 282 (376)
Q Consensus 218 ~~-g~~e~l~~L~~aGld~i~h---~lEtv~~l~~~vr~---------r~~t~e~~L~vl~~ak~~~p~Gi~--tkt~im 282 (376)
|. |.+.-++.++++|+|.+-. -+|..+++.+.... ...+.+++++.+...-+ |+. +...-.
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~----GFiY~vs~~Gv 182 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS----GFIYYVSRMGV 182 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC----CcEEEEecccc
Confidence 32 3456688999999987643 24555555443221 12445666776666544 542 233233
Q ss_pred Eec-CCCHHHHHHHHHHHHHcC
Q 017179 283 LGC-GETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 283 vGl-GET~ee~~e~L~~Lrel~ 303 (376)
-|- .....++.+.++.+|++-
T Consensus 183 TG~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 183 TGARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred cCCCcccchhHHHHHHHHHHhc
Confidence 344 232335778888888765
No 419
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.33 E-value=1.5e+02 Score=28.68 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc--Ccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS--GLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a--Gld 234 (376)
.+++.+.+.|++..+.|.+.|-|=++... +...+.+..+|+.|.+.. ++.|.+=+ + +.+.++.-.++ |.+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~---~eE~~r~~~~v~~l~~~~-~~plsIDT--~--~~~v~eaaL~~~~G~~ 93 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV---EEEPETMEWLVETVQEVV-DVPLCIDS--P--NPAAIEAGLKVAKGPP 93 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc---hhHHHHHHHHHHHHHHhC-CCCEEEeC--C--CHHHHHHHHHhCCCCC
Confidence 68899999999999999999988655322 122556888888887654 34443322 2 45666666665 777
Q ss_pred cccc-cccc--hHHHHHh------------hcCC--CCCHHHHHHH----HHHHHHhCCCCc---eEEEeEEEe-cCCCH
Q 017179 235 VFAH-NIET--VEELQSA------------VRDH--RANFKQSLDV----LMMAKDYVPAGT---LTKTSIMLG-CGETP 289 (376)
Q Consensus 235 ~i~h-~lEt--v~~l~~~------------vr~r--~~t~e~~L~v----l~~ak~~~p~Gi---~tkt~imvG-lGET~ 289 (376)
.+|- +.+. .+++.+- +.++ ..+.++.++. ++.+.+ .|+ .+--+-.+| +|-+.
T Consensus 94 iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~---~GI~~~~IilDPgi~~~~~~~ 170 (261)
T PRK07535 94 LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADE---YGIPPEDIYIDPLVLPLSAAQ 170 (261)
T ss_pred EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH---cCCCHhHEEEeCCCCcccCCh
Confidence 6644 2221 2333321 1101 1233444444 444555 466 455555666 36655
Q ss_pred HHH---HHHHHHHHHc
Q 017179 290 DQV---VSTMEKVRAA 302 (376)
Q Consensus 290 ee~---~e~L~~Lrel 302 (376)
++. ++.++.+++.
T Consensus 171 ~~~~~~l~~i~~l~~~ 186 (261)
T PRK07535 171 DAGPEVLETIRRIKEL 186 (261)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555 5555555554
No 420
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=63.16 E-value=97 Score=30.04 Aligned_cols=157 Identities=11% Similarity=0.020 Sum_probs=87.6
Q ss_pred hH-HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 161 EP-TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 161 Ei-~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+| ++.|+...+.|++.++|. ||.. .. .++|+.|.+.. ++.|. ..+-. ..+.++.+.++|++.+..+
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvV-----DLg~---~n-~~~i~~i~~~~-~~~v~-vGGGI--r~e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVI-----MLGP---NN-DDAAKEALHAY-PGGLQ-VGGGI--NDTNAQEWLDEGASHVIVT 104 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEE-----ECCC---Cc-HHHHHHHHHhC-CCCEE-EeCCc--CHHHHHHHHHcCCCEEEEC
Confidence 45 999999999999999987 4522 12 36777776643 24443 23333 2489999999999998775
Q ss_pred ccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEE---------EecC---CCHHHHH-HHHHHHHHcCCcE
Q 017179 240 IETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIM---------LGCG---ETPDQVV-STMEKVRAAGVDV 306 (376)
Q Consensus 240 lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~im---------vGlG---ET~ee~~-e~L~~Lrel~vd~ 306 (376)
= ..++. +..+.+.+-++.+... +.-+.+.-+.- .--| +|.-+.. +.++.+.+. +..
T Consensus 105 S----~av~~---~~i~~~~~~~i~~~fG---~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~ 173 (253)
T TIGR02129 105 S----WLFTK---GKFDLKRLKEIVSLVG---KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDE 173 (253)
T ss_pred c----HHHhC---CCCCHHHHHHHHHHhC---CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCE
Confidence 1 11111 1112222223332221 12233333322 2123 2455666 778888877 877
Q ss_pred EEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 307 MTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 307 v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+-+..--+- ++. .. --++.+++++.......+|||
T Consensus 174 il~TdI~rD---Gtl-~G----~dlel~~~l~~~~~ipVIASG 208 (253)
T TIGR02129 174 FLIHAADVE---GLC-KG----IDEELVSKLGEWSPIPITYAG 208 (253)
T ss_pred EEEeeeccc---Ccc-cc----CCHHHHHHHHhhCCCCEEEEC
Confidence 766422222 221 11 136667777777777777777
No 421
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=63.12 E-value=1.6e+02 Score=29.04 Aligned_cols=138 Identities=11% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHHCCCcEEEEEeeeC---C------------------CCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCC-CCChHH
Q 017179 168 AIASWGLDYVVITSVDR---D------------------DLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDF-RGNNGC 224 (376)
Q Consensus 168 al~~~G~~eIvLTsg~r---~------------------dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~-~g~~e~ 224 (376)
.+...|+..|++=+... . .+...|.+.|.+.++.+++..++..+-+ +.+.- ....+.
T Consensus 31 ~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~ 110 (310)
T PRK02506 31 EVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTI 110 (310)
T ss_pred HHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHH
Confidence 46677888887755531 1 2334467888888888876644332211 22210 002455
Q ss_pred HHHHHHcC-cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC
Q 017179 225 VREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG 303 (376)
Q Consensus 225 l~~L~~aG-ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~ 303 (376)
++.+.++| +|.+..|+-.-+ + ..-+.-+.+.+...++++.+++....=+.+|-+- ..+..++.+....+.+.+
T Consensus 111 a~~~~~~g~ad~iElN~ScPn-~-~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp----~~~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 111 LKKIQASDFNGLVELNLSCPN-V-PGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPP----YFDIVHFDQAAAIFNKFP 184 (310)
T ss_pred HHHHhhcCCCCEEEEECCCCC-C-CCccccccCHHHHHHHHHHHHHhcCCccEEecCC----CCCHHHHHHHHHHhCcCc
Confidence 66666777 888888765432 0 0111124467888888888887431102233332 236688888888888888
Q ss_pred CcEEEeec
Q 017179 304 VDVMTFGQ 311 (376)
Q Consensus 304 vd~v~~~q 311 (376)
++.+...+
T Consensus 185 ~~~i~~~n 192 (310)
T PRK02506 185 LAFVNCIN 192 (310)
T ss_pred eEEEEEec
Confidence 88665544
No 422
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=62.49 E-value=43 Score=32.11 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC--cEEEE-ecCCCC-CChHHHHHHHHcC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN--MLIEA-LVPDFR-GNNGCVREVAKSG 232 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~--i~Ie~-l~pd~~-g~~e~l~~L~~aG 232 (376)
.+++.+.+.++++.+.|++.|.|- |...-.....+.++++.|++..|+ +.+++ ..-++. +....+. ..++|
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~----DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~la-Ai~aG 214 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIP----DTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLA-AVEAG 214 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHH-HHHhC
Confidence 578899999999999999988773 111001145688999999998876 66654 222321 1122333 34678
Q ss_pred ccccccc
Q 017179 233 LNVFAHN 239 (376)
Q Consensus 233 ld~i~h~ 239 (376)
++.+.-.
T Consensus 215 ~~~iD~s 221 (268)
T cd07940 215 ARQVECT 221 (268)
T ss_pred CCEEEEE
Confidence 8876443
No 423
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=62.41 E-value=36 Score=32.19 Aligned_cols=136 Identities=21% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCchhHH-HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCc-EEEEecCC------C-CCChHHHH
Q 017179 156 PPDPDEPT-NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNM-LIEALVPD------F-RGNNGCVR 226 (376)
Q Consensus 156 ~l~~eEi~-~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i-~Ie~l~pd------~-~g~~e~l~ 226 (376)
+|+-.+++ ..|.+....|..-|.+-|++ -|++|+... ++ .|.+.--| | ....+.++
T Consensus 28 pl~~~~iv~~mA~Aa~~gGAvgiR~~gv~--------------dIkai~~~v-~vPIIGIiKrd~~~s~v~ITptlkeVd 92 (229)
T COG3010 28 PLDSPEIVAAMALAAEQGGAVGIRIEGVE--------------DIKAIRAVV-DVPIIGIIKRDYPDSPVRITPTLKEVD 92 (229)
T ss_pred CCcchhHHHHHHHHHHhCCcceEeecchh--------------hHHHHHhhC-CCCeEEEEecCCCCCCceecccHHHHH
Confidence 45544554 56777778888888766542 244454433 11 11111111 1 11467899
Q ss_pred HHHHcCccccccc-------ccchHHHHHhhcCC-------CCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCH--
Q 017179 227 EVAKSGLNVFAHN-------IETVEELQSAVRDH-------RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETP-- 289 (376)
Q Consensus 227 ~L~~aGld~i~h~-------lEtv~~l~~~vr~r-------~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~-- 289 (376)
.|.++|+++++.- .++.+++..+.+.+ -.++++-+. |++ .|+-+-.+-|.|. +++.
T Consensus 93 ~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~----a~~---~G~D~IGTTLsGYT~~~~~~ 165 (229)
T COG3010 93 ALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLN----AHK---LGFDIIGTTLSGYTGYTEKP 165 (229)
T ss_pred HHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHH----HHH---cCCcEEecccccccCCCCCC
Confidence 9999999998762 11334444433211 123333332 333 2565555556777 5333
Q ss_pred -HHHHHHHHHHHHcCCcEEEeecCC
Q 017179 290 -DQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 290 -ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+.=.++++.|.+.++.+|-=|.|-
T Consensus 166 ~~pDf~lvk~l~~~~~~vIAEGr~~ 190 (229)
T COG3010 166 TEPDFQLVKQLSDAGCRVIAEGRYN 190 (229)
T ss_pred CCCcHHHHHHHHhCCCeEEeeCCCC
Confidence 223455566666666666555443
No 424
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=62.18 E-value=19 Score=33.48 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeee-CCCCCcc----cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVD-RDDLADQ----GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~-r~dl~d~----g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.+.++..+.|++..+.|.+.|=|=++- ++..... -.+.+..+|+.+.+.++++.|.+=+. +.+.++...++
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~----~~~v~~~aL~~ 91 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF----NPEVAEAALKA 91 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC----CHHHHHHHHHc
Confidence 567888888999999999999886553 4433211 24567778888876445666655333 46777776666
Q ss_pred Ccccccc
Q 017179 232 GLNVFAH 238 (376)
Q Consensus 232 Gld~i~h 238 (376)
|.+.++-
T Consensus 92 g~~~ind 98 (210)
T PF00809_consen 92 GADIIND 98 (210)
T ss_dssp TSSEEEE
T ss_pred CcceEEe
Confidence 8776654
No 425
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=62.05 E-value=99 Score=34.50 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNI 240 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~l 240 (376)
.+.+.++++.+.|++-|.|= ..+++ ...+..++++|++....-.+.+++-| .++...+.|.| +..+.
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR---~K~~~---~~~~~~~a~~l~~l~~~~~~~liind------~~~la~~~~~d-VHlg~ 86 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLR---DKNAG---VEDVRAAAKELKELCDARGVALVVND------RLDVAVELGLH-VHIGQ 86 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEe---CCCCC---HHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCC-eecCC
Confidence 46667777778898887762 12333 34455666666543211223344433 25556677888 54432
Q ss_pred cchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHHH---cCCcEEEeecCC
Q 017179 241 ETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVRA---AGVDVMTFGQYM 313 (376)
Q Consensus 241 Etv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lre---l~vd~v~~~qY~ 313 (376)
+-.+ ++.+++..+ .+.++|. ..+.+|+......-.. .++|++.||+.+
T Consensus 87 ~dl~-------------------~~~~r~~~~------~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf 138 (755)
T PRK09517 87 GDTP-------------------YTQARRLLP------AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVA 138 (755)
T ss_pred CcCC-------------------HHHHHHhcC------CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCcc
Confidence 2111 122223211 2357788 7899887544332223 359999999876
No 426
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=61.58 E-value=1.1e+02 Score=29.26 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=46.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--CCcEEEEecCC-CCCChHHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--PNMLIEALVPD-FRGNNGCVREVAK 230 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--p~i~Ie~l~pd-~~g~~e~l~~L~~ 230 (376)
+-+.+|-+..++++.+.|++.||-|+-......+...+.+.+.+.+|.+.. ..+.++++.+. .+-+.+.++.+..
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~ 93 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDK 93 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCceEEEchHHHHHHhc
Confidence 467888899999999999999999997643222333455555555554322 23455555542 1124556666654
No 427
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.19 E-value=48 Score=32.74 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=47.0
Q ss_pred HHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 165 VAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 165 ~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+.++.+.|++-|.| |+.. .+.+.+.++.+++..|++.+++.-+ . +.+.+..+.+.|+|++..+
T Consensus 211 ea~eal~~gaDiI~L-----Dnm~---~e~vk~av~~~~~~~~~v~ieaSGG-I--~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 211 QLDEVLAEGAELVLL-----DNFP---VWQTQEAVQRRDARAPTVLLESSGG-L--TLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred HHHHHHHcCCCEEEe-----CCCC---HHHHHHHHHHHhccCCCEEEEEECC-C--CHHHHHHHHhcCCCEEEeC
Confidence 455566788888876 2332 5667778887777778888886543 3 7889999999999998654
No 428
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=61.18 E-value=81 Score=33.04 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+++-..+.++++.+.|++.|.|- |--.+. -.....++|++|++..+ +.|++ ..-++.--......-.++|+|+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~--Dt~G~l--~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIK--DMAGIL--TPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 567888999999999999999883 110111 14568899999998875 66654 2222210122233345789988
Q ss_pred ccccc
Q 017179 236 FAHNI 240 (376)
Q Consensus 236 i~h~l 240 (376)
+.-.+
T Consensus 226 vD~sv 230 (448)
T PRK12331 226 IDTAI 230 (448)
T ss_pred EEeec
Confidence 75543
No 429
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=61.05 E-value=76 Score=33.48 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEE--eeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCC-ChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVIT--SVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLT--sg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~aGl 233 (376)
.+++...+.++++.+.|++.|.|- .|. . -.....++|++|++..+ +.|++=.=+-.| -......-.++|+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~----l--~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDMAGL----L--TPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCC----c--CHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCC
Confidence 467889999999999999999873 221 1 13568899999998875 666542212122 1222333457899
Q ss_pred ccccccc
Q 017179 234 NVFAHNI 240 (376)
Q Consensus 234 d~i~h~l 240 (376)
|++.-.+
T Consensus 223 d~vD~sv 229 (467)
T PRK14041 223 DMFDTAI 229 (467)
T ss_pred CEEEeec
Confidence 8875543
No 430
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=60.96 E-value=1.7e+02 Score=28.74 Aligned_cols=169 Identities=19% Similarity=0.216 Sum_probs=100.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
.+.+.+..+++++.+.+.--|+-++...-.+. .|.+.+..+++.+.+.. +.+.|. +.-|+..+.+.+..-.++|-.+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~-~g~~~~~~~~~~~a~~~~~~VPV~-lHLDHg~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 26 NNLETINAVLEAAAEEKSPVIIQFSNGAAKYI-AGLGAISAMVKAMSEAYPYGVPVA-LHLDHGASEEDCAQAVKAGFSS 103 (288)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCcchhhcc-CCHHHHHHHHHHHHHhccCCCcEE-EECCCCCCHHHHHHHHHcCCCE
Confidence 45677888888888888866665554332221 24677888888776654 134443 5556665778888888888654
Q ss_pred ccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC----HH------HHHHHHHHHHHc
Q 017179 236 FAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET----PD------QVVSTMEKVRAA 302 (376)
Q Consensus 236 i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET----~e------e~~e~L~~Lrel 302 (376)
+ .+|.+. .+ ..+.+...++++.||.. |+.+ --+.|-|- |+ .+ +-.+..+|+++.
T Consensus 104 V--MiDgS~lp~-------eeNi~~T~~vv~~Ah~~---gv~VEaElG~vgg~-e~~~~~~~~~~~~T~peea~~Fv~~T 170 (288)
T TIGR00167 104 V--MIDGSHEPF-------EENIELTKKVVERAHKM---GVSVEAELGTLGGE-EDGVSVADESALYTDPEEAKEFVKLT 170 (288)
T ss_pred E--EecCCCCCH-------HHHHHHHHHHHHHHHHc---CCEEEEEEeeccCc-cCCcccccccccCCCHHHHHHHHhcc
Confidence 3 455543 22 22445566888888884 5544 33333222 11 11 346888999999
Q ss_pred CCcEEEeecCCCCCCCCCCCcccCChH--HHHHHHHHHHHHhhhhh
Q 017179 303 GVDVMTFGQYMRPSKRHMPVSEYITPE--AFERYRALGMEMGFRYV 346 (376)
Q Consensus 303 ~vd~v~~~qY~~P~~~~~~v~~~v~pe--~~~~l~~~a~~~gf~~~ 346 (376)
++|.+-+. + +.-|-.-.. .|. .|++|+++....+...|
T Consensus 171 gvD~LAva-i---Gt~HG~y~~--~p~~Ld~~~L~~I~~~v~vPLV 210 (288)
T TIGR00167 171 GVDSLAAA-I---GNVHGVYKG--EPKGLDFERLEEIQKYVNLPLV 210 (288)
T ss_pred CCcEEeec-c---CccccccCC--CCCccCHHHHHHHHHHhCCCEE
Confidence 99987663 1 122221111 233 57777777777665443
No 431
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.87 E-value=46 Score=32.53 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+.+..+.+.|++.|.|. .. + .+.+.+.++.++...|++.+++.- .. +++.+..+.+.|+|++..+
T Consensus 193 eea~~A~~~GaDiI~LD---n~---~--~e~l~~~v~~~~~~~~~~~ieAsG-gI--t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 193 EEAKNAMNAGADIVMCD---NM---S--VEEIKEVVAYRNANYPHVLLEASG-NI--TLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHHHHHHcCCCEEEEC---CC---C--HHHHHHHHHHhhccCCCeEEEEEC-CC--CHHHHHHHHHcCCCEEEeC
Confidence 45556668899877652 22 2 556777887776666777777543 33 7899999999999998654
No 432
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=60.62 E-value=1.1e+02 Score=29.01 Aligned_cols=148 Identities=13% Similarity=0.099 Sum_probs=82.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCC-CcEEEEecCCCCCChH----HHHHHHHcC
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKP-NMLIEALVPDFRGNNG----CVREVAKSG 232 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~~e----~l~~L~~aG 232 (376)
++++..+.++.+.+.|++.+-|=-|.. .+.-.+.|++|++..+ ++.+.+ ...-.-+.+ .++.|.+.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-------~~~d~~~v~~vr~~~g~~~~l~v-Dan~~~~~~~a~~~~~~l~~~~ 156 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-------PARDVAVVAALREAVGDDAELRV-DANRGWTPKQAIRALRALEDLG 156 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-------HHHHHHHHHHHHHhcCCCCEEEE-eCCCCcCHHHHHHHHHHHHhcC
Confidence 467888888888999999888753321 1233678888888764 454432 111100322 233444444
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
++.+ |- - . +..+ ++.++.+++.. +++ +-.||+..+..+....++.-.+|++.+-
T Consensus 157 i~~i----Ee---P----~-~~~d----~~~~~~l~~~~--~ip------ia~dE~~~~~~~~~~~i~~~~~d~v~~k-- 210 (265)
T cd03315 157 LDYV----EQ---P----L-PADD----LEGRAALARAT--DTP------IMADESAFTPHDAFRELALGAADAVNIK-- 210 (265)
T ss_pred CCEE----EC---C----C-Cccc----HHHHHHHHhhC--CCC------EEECCCCCCHHHHHHHHHhCCCCEEEEe--
Confidence 3332 21 0 1 1222 24444444421 122 2236777777777777777888888763
Q ss_pred CCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhcc
Q 017179 313 MRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVAS 348 (376)
Q Consensus 313 ~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~s 348 (376)
|.+-+- ..+..++..+|...|...+.+
T Consensus 211 --~~~~GG-------i~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 211 --TAKTGG-------LTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred --cccccC-------HHHHHHHHHHHHHcCCcEEec
Confidence 432222 346777888888888877654
No 433
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.48 E-value=1.7e+02 Score=29.72 Aligned_cols=177 Identities=15% Similarity=0.221 Sum_probs=103.7
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+..+.+.|- +.-|+..+.+.+..-.++|-.++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~s~~~~~~--~g~~~~~~~~~~~a~~~~~VPVa-lHLDHg~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVILQASAGARKY--AGEPFLRHLILAAVEEYPHIPVV-MHQDHGNSPATCQRAIQLGFTSV 102 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCccHhhh--CCHHHHHHHHHHHHHhCCCCcEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4577788888888888887666655533222 34667888888887765444443 44566557788888888887654
Q ss_pred cccccchHHHHHhhc---CCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-C--C------C--------------HH
Q 017179 237 AHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-G--E------T--------------PD 290 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr---~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-G--E------T--------------~e 290 (376)
++|.+. +..-. |-..+.+...++++.|+. .|+.|-.- +|. | | . .-
T Consensus 103 --MiDgS~--l~~~~~~~p~eENI~~Tkevve~Ah~---~Gv~VEaE--LG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T 173 (347)
T PRK09196 103 --MMDGSL--KADGKTPASYEYNVDVTRKVVEMAHA---CGVSVEGE--LGCLGSLETGMGGEEDGHGAEGKLSHDQLLT 173 (347)
T ss_pred --EecCCC--CcccCCCCCHHHHHHHHHHHHHHHHH---cCCeEEEE--EeeccCccccccccccCcccccccchhhcCC
Confidence 344332 00000 001234455677888887 46655432 233 1 1 1 11
Q ss_pred HHHHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCCh----HHHHHHHHHHHHH-hhhhh---ccc
Q 017179 291 QVVSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP----EAFERYRALGMEM-GFRYV---ASG 349 (376)
Q Consensus 291 e~~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~p----e~~~~l~~~a~~~-gf~~~---~sg 349 (376)
+-.+..+|+++.++|.+-+. + +..|-.-....+| =.|+++++++... ++..| .||
T Consensus 174 ~PeeA~~Fv~~TgvD~LAva--i--GT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG 236 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIA--I--GTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSS 236 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhh--h--ccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCC
Confidence 36788999999999987653 1 1222211111112 2588999998887 56444 565
No 434
>PRK14847 hypothetical protein; Provisional
Probab=60.30 E-value=2e+02 Score=29.10 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC---CCcEEEEecCCCCCChHHHHHHHHc-
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK---PNMLIEALVPDFRGNNGCVREVAKS- 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~---p~i~Ie~l~pd~~g~~e~l~~L~~a- 231 (376)
.++++|=+++|+.+.++|+++|-+-- |-.+... .+.+++|.+.. .+..|.++..-. .+.++.-.++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~------Pa~s~~e-~e~ir~I~~~~~~~~~~~i~~~~r~~---~~dId~a~e~~ 119 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAF------PSASQTD-FDFVRKLIDERRIPDDVTIEALTQSR---PDLIARTFEAL 119 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeC------CCCCHHH-HHHHHHHHHhCCCCCCcEEEEEecCc---HHHHHHHHHHh
Confidence 48999999999999999999997532 2112222 45677775542 246777776542 3434444444
Q ss_pred ---CcccccccccchHH-HHHhhcCCCCCHHHHHH----HHHHHHHh
Q 017179 232 ---GLNVFAHNIETVEE-LQSAVRDHRANFKQSLD----VLMMAKDY 270 (376)
Q Consensus 232 ---Gld~i~h~lEtv~~-l~~~vr~r~~t~e~~L~----vl~~ak~~ 270 (376)
+.+.++..+-+++- +..+++ .+.++.++ .++.|++.
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~---~s~~~vl~~~~~~v~~Ak~~ 163 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFG---MSRAEIKEIALAGTRQIRAL 163 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHh
Confidence 44557777778873 433443 46666665 55566664
No 435
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=60.24 E-value=2.1e+02 Score=30.46 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+++.+.|+...+.|.+-|-|-++-.. + +.+.+..+|+.+++.. ++.|.+ -.+ +.+.++.-.++|++.++--
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~--p--~~~~v~~~V~~l~~~~-~~pISI--DT~--~~~v~eaAL~aGAdiINsV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD--D--DPDVVKEKVKTALDAL-DSPVIA--DTP--TLDELYEALKAGASGVIMP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC--C--cHHHHHHHHHHHHhhC-CCcEEE--eCC--CHHHHHHHHHcCCCEEEEC
Confidence 88999999999999999988665321 1 2556888888887753 233332 223 5677888888899988631
Q ss_pred -ccchHHHHHhhc---------C--CCCCHHHHHHHHHHHHHhCCCCc-eEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 240 -IETVEELQSAVR---------D--HRANFKQSLDVLMMAKDYVPAGT-LTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 240 -lEtv~~l~~~vr---------~--r~~t~e~~L~vl~~ak~~~p~Gi-~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
-+..+++.+-+. + ....|+...+.++.+.+ .|+ .+-.+-++|+ ...++.++|..++.
T Consensus 236 s~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~---~Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 236 DVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRT---SGYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred CccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHH---CCCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 122344433211 0 12346777778888888 577 4444444444 44557777777764
No 436
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.02 E-value=44 Score=31.33 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (376)
.+++++.+.++.+.+.|++.|.|.--..-.. ...+.++++.+++..|++.+++ ..-++. +....+. -.++|++
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~----P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~la-A~~aG~~ 217 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLAT----PEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLA-ALEAGAD 217 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcC----HHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHH-HHHcCCC
Confidence 5688899999999999999888731111111 3567888999988887766664 222221 1123333 3468887
Q ss_pred cccc
Q 017179 235 VFAH 238 (376)
Q Consensus 235 ~i~h 238 (376)
.+..
T Consensus 218 ~id~ 221 (265)
T cd03174 218 RVDG 221 (265)
T ss_pred EEEe
Confidence 7644
No 437
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=59.97 E-value=1.8e+02 Score=28.53 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=99.3
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|.+.+..+++.+.+.. .+.|- +.-|+..+.+.+..-.++|-++
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~--~~~~~~~~~~~~~a~~~-~VPV~-lHLDH~~~~~~i~~ai~~GftS- 95 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIKY--AGLELLVAMVKAAAERA-SVPVA-LHLDHGSSFELIKRAIRAGFSS- 95 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhh--CCHHHHHHHHHHHHHHC-CCCEE-EECCCCCCHHHHHHHHHhCCCE-
Confidence 4567778888888888877666555433222 34677888888887664 24443 4446554678888888888554
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceE--EEeEEEecCCC-------HHHHHHHHHHHHHcCCcEE
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT--KTSIMLGCGET-------PDQVVSTMEKVRAAGVDVM 307 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~t--kt~imvGlGET-------~ee~~e~L~~Lrel~vd~v 307 (376)
+++|.+.--+ ..+.+...++++.||.. |+.+ --+-|-|-.+. .-+..+..+++++.++|.+
T Consensus 96 -VMiD~S~l~~------eeNi~~t~~vv~~ah~~---gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 165 (276)
T cd00947 96 -VMIDGSHLPF------EENVAKTKEVVELAHAY---GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL 165 (276)
T ss_pred -EEeCCCCCCH------HHHHHHHHHHHHHHHHc---CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE
Confidence 3556543111 22455667888888884 5544 33333322101 1136778889999999987
Q ss_pred EeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 308 TFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 308 ~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
-+. + +.-|-.-..-.+.=.|+.|+++....+...|
T Consensus 166 Avs-i---Gt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLV 200 (276)
T cd00947 166 AVA-I---GTSHGAYKGGEPKLDFDRLKEIAERVNVPLV 200 (276)
T ss_pred Eec-c---CccccccCCCCCccCHHHHHHHHHHhCCCEE
Confidence 663 1 1122211110011246677777776655433
No 438
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.91 E-value=99 Score=29.36 Aligned_cols=148 Identities=8% Similarity=0.039 Sum_probs=77.7
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHhhC--CCcEEEE--ecCCC---CCChH-HHHHH
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELK--PNMLIEA--LVPDF---RGNNG-CVREV 228 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~g~~~~~elvr~Ik~~~--p~i~Ie~--l~pd~---~g~~e-~l~~L 228 (376)
..+.+.+.++.+..+|++.+++..+...... +.....+.+.++.|.+.. .++.+.+ ..+.+ ..+.+ .++.+
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li 162 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEII 162 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 4567778888889999999999777543211 112344556666665442 2444432 22221 22334 44445
Q ss_pred HHcC-cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCC----CCceEEE-----------eEEEecCCCHHHH
Q 017179 229 AKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP----AGTLTKT-----------SIMLGCGETPDQV 292 (376)
Q Consensus 229 ~~aG-ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p----~Gi~tkt-----------~imvGlGET~ee~ 292 (376)
.+.+ -+.+...+++..-... .....+.+++.+.++.+.+..+ ..+.++= +..+|-|+ -++
T Consensus 163 ~~v~~~~~~g~~lD~~h~~~~--g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~~~~~~~~~~G~G~--id~ 238 (279)
T cd00019 163 DLIKEKPRVGVCIDTCHIFAA--GYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGKDRHEPIGEGD--IDG 238 (279)
T ss_pred HhcCCCCCeEEEEEhhhHHhc--cCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCcccCCCccccCCCCCC--cCC
Confidence 4555 4566666777663221 1011123445555555544321 1244442 23444444 457
Q ss_pred HHHHHHHHHcCC-c-EEEe
Q 017179 293 VSTMEKVRAAGV-D-VMTF 309 (376)
Q Consensus 293 ~e~L~~Lrel~v-d-~v~~ 309 (376)
.+.++.|++.+. + .+.+
T Consensus 239 ~~~l~~L~~~~y~~g~~~l 257 (279)
T cd00019 239 EELFKELKKDPYQNIPLIL 257 (279)
T ss_pred HHHHHHHHhCcccCCCEEE
Confidence 777788888886 4 4444
No 439
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=59.52 E-value=24 Score=35.27 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=42.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCc-cc------HHHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLAD-QG------SGHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d-~g------~~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+.+++.++.+.+.|++.|.|=|+.. ..| .| ..-+...|+.||+.+|++.|
T Consensus 57 r~sid~l~~~~~~~~~~Gi~~v~lFgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~v 117 (322)
T PRK13384 57 RLPESALADEIERLYALGIRYVMPFGISH--HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMV 117 (322)
T ss_pred eECHHHHHHHHHHHHHcCCCEEEEeCCCC--CCCCCcccccCCCChHHHHHHHHHHHCCCeEE
Confidence 47899999999999999999999988731 122 11 12367899999999998765
No 440
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=59.39 E-value=32 Score=34.47 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=51.6
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC-c
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-L 233 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-l 233 (376)
.++++|..+.++.+.+.|+++|.|++|.....+ +....++.++.+.||+... +.|- ..+++. +.+..+.+.+.| +
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-ipVi-~~G~i~-~~~~a~~~l~~g~~ 299 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN-IATG-AVGLIT-SGAQAEEILQNNRA 299 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC-CcEE-EeCCCC-CHHHHHHHHHcCCC
Confidence 367899999999999999999999998521100 1001224566777777542 3332 233433 567777777766 7
Q ss_pred cccccc
Q 017179 234 NVFAHN 239 (376)
Q Consensus 234 d~i~h~ 239 (376)
|.+..+
T Consensus 300 D~V~~g 305 (337)
T PRK13523 300 DLIFIG 305 (337)
T ss_pred ChHHhh
Confidence 877664
No 441
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=59.27 E-value=84 Score=32.73 Aligned_cols=131 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeee------CCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCC---------
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVD------RDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN--------- 221 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~------r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~--------- 221 (376)
+..++.+-+++++-+.|+-.+-+=||. |---.| =.+-+|+||+..|++.+..|.-.- |
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnED-----PWeRLr~lk~~~~nT~LQMLlRGQ--NlvGYrhyaD 97 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNED-----PWERLRELKKAVPNTKLQMLLRGQ--NLVGYRHYAD 97 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCC-----HHHHHHHHHHhCCCcHHHHHHccC--ccccccCCch
Q ss_pred ---hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec--CCCHHHHHHHH
Q 017179 222 ---NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC--GETPDQVVSTM 296 (376)
Q Consensus 222 ---~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl--GET~ee~~e~L 296 (376)
+..++...+.|.|+| |+|..+++ ....-..++.+++ .|..+-..|-+-. --|.+-.++..
T Consensus 98 DvVe~Fv~ka~~nGidvf--------RiFDAlND----~RNl~~ai~a~kk---~G~h~q~~i~YT~sPvHt~e~yv~~a 162 (472)
T COG5016 98 DVVEKFVEKAAENGIDVF--------RIFDALND----VRNLKTAIKAAKK---HGAHVQGTISYTTSPVHTLEYYVELA 162 (472)
T ss_pred HHHHHHHHHHHhcCCcEE--------Eechhccc----hhHHHHHHHHHHh---cCceeEEEEEeccCCcccHHHHHHHH
Q ss_pred HHHHHcCCcEEEe
Q 017179 297 EKVRAAGVDVMTF 309 (376)
Q Consensus 297 ~~Lrel~vd~v~~ 309 (376)
+.|.++++|.|.|
T Consensus 163 kel~~~g~DSIci 175 (472)
T COG5016 163 KELLEMGVDSICI 175 (472)
T ss_pred HHHHHcCCCEEEe
No 442
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.25 E-value=61 Score=30.99 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (376)
.+++++.+.++++.+.|++.|.|- |--.. .-...+.++++.+++..+.+.+++ +.-++. +....+.. .++|++
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~--DT~G~--~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laA-i~aGa~ 212 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVT--DSAGA--MLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAA-VEAGAT 212 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--CCCCC--cCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHH-HHhCCC
Confidence 568999999999999999988762 11001 114568899999998876545543 232331 11223333 367888
Q ss_pred ccccc
Q 017179 235 VFAHN 239 (376)
Q Consensus 235 ~i~h~ 239 (376)
.+.-.
T Consensus 213 ~vd~s 217 (263)
T cd07943 213 RIDGS 217 (263)
T ss_pred EEEee
Confidence 76443
No 443
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.04 E-value=1.8e+02 Score=30.89 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHH------HHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRK------LKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~------Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+..+.+.+.++..+.++..+.. + .|.-...++++. .+.....+.|.+..+......+.+..|.++|+|++
T Consensus 181 ~eAl~lm~e~~i~~LPVVd~~g~-l--iGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i 257 (495)
T PTZ00314 181 EEANEVLRESRKGKLPIVNDNGE-L--VALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVL 257 (495)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCc-E--EEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
Confidence 34455566778877766532110 0 011111122222 22223456776666532123578899999999987
Q ss_pred cccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC
Q 017179 237 AHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPS 316 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~ 316 (376)
.... . .+++ ...++.++.+++.+|. ..+|.|-.-|.++..+ +.+.|+|+|-++ +-|+
T Consensus 258 ~id~--a---------~G~s-~~~~~~i~~ik~~~~~-----~~v~aG~V~t~~~a~~----~~~aGad~I~vg--~g~G 314 (495)
T PTZ00314 258 VVDS--S---------QGNS-IYQIDMIKKLKSNYPH-----VDIIAGNVVTADQAKN----LIDAGADGLRIG--MGSG 314 (495)
T ss_pred EEec--C---------CCCc-hHHHHHHHHHHhhCCC-----ceEEECCcCCHHHHHH----HHHcCCCEEEEC--CcCC
Confidence 6531 1 1233 2347889999986553 4566777788887765 447899998765 3353
Q ss_pred CCC-CC-Ccc--cCChHHHHHHHHHHHHHhhhhhccc
Q 017179 317 KRH-MP-VSE--YITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 317 ~~~-~~-v~~--~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
.-. +. +.. ...-.......+++.+.|...++.|
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG 351 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYARERGVPCIADG 351 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC
Confidence 111 11 111 1111234445555666666666665
No 444
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=58.91 E-value=45 Score=33.41 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=51.1
Q ss_pred CCchhHHHHHHHHHHCC-CcEEEEEeeeCCC-------CC--cccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHH
Q 017179 157 PDPDEPTNVAEAIASWG-LDYVVITSVDRDD-------LA--DQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR 226 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G-~~eIvLTsg~r~d-------l~--d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~ 226 (376)
++++|.++.++.+.+.| ++.|.|++|.... .+ ..+..++.+.++.+|+... +.|- ..+++. +.+.++
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi-~~G~i~-~~~~~~ 301 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVF-HAGRIR-DPAEAE 301 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEE-eeCCCC-CHHHHH
Confidence 57789999999999998 8999998774211 10 0112345677788877642 3332 345543 556666
Q ss_pred HHHHc-Cccccccc
Q 017179 227 EVAKS-GLNVFAHN 239 (376)
Q Consensus 227 ~L~~a-Gld~i~h~ 239 (376)
.+.+. ++|.+..+
T Consensus 302 ~~l~~~~~D~V~~g 315 (343)
T cd04734 302 QALAAGHADMVGMT 315 (343)
T ss_pred HHHHcCCCCeeeec
Confidence 66665 48887765
No 445
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=58.82 E-value=1.2e+02 Score=28.84 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=51.7
Q ss_pred HHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHH
Q 017179 168 AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQ 247 (376)
Q Consensus 168 al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~ 247 (376)
.++..|..||-.=-|.-+|....|...+.++.+.+....+.+ +++-..++ +.+.+..+..+|+|.+... +.++
T Consensus 121 ~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~t--kILaAS~r-~~~~v~~a~~~G~d~vTvp----~~vl 193 (222)
T PRK12656 121 LAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDS--KILAASFK-NVAQVNKAFALGAQAVTAG----PDVF 193 (222)
T ss_pred HHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCC--EEEEEecC-CHHHHHHHHHcCCCEEecC----HHHH
Confidence 344578888755444334443234444555555555544444 44656665 5677777888999988554 3666
Q ss_pred HhhcCCCCCHHHHHHHHHHHHH
Q 017179 248 SAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 248 ~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.+|-....+-+..-+..+.+.+
T Consensus 194 ~~l~~~p~t~~~~~~F~~dw~~ 215 (222)
T PRK12656 194 EAAFAMPSIQKAVDDFADDWEA 215 (222)
T ss_pred HHHhcCCcHHHHHHHHHHHHHH
Confidence 6653223333333333344444
No 446
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.77 E-value=80 Score=30.66 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee-C--CCCCcc-cHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD-R--DDLADQ-GSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGL 233 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~-r--~dl~d~-g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGl 233 (376)
+.+.+++.|+.+++.|+..+..-+=+ | ++-.++ |.+ -...++++++.. ++. +++--+ +.+.++.+.+. +
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~-gl~~l~~~~~~~-Gl~--~~te~~--d~~~~~~l~~~-v 111 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEE-GLKILKEVGDKY-NLP--VVTEVM--DTRDVEEVADY-A 111 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHH-HHHHHHHHHHHc-CCC--EEEeeC--ChhhHHHHHHh-C
Confidence 67888999999999999844433222 1 111111 322 334455555443 222 233222 45667777666 7
Q ss_pred cccccc
Q 017179 234 NVFAHN 239 (376)
Q Consensus 234 d~i~h~ 239 (376)
|.+.++
T Consensus 112 d~~kIg 117 (266)
T PRK13398 112 DMLQIG 117 (266)
T ss_pred CEEEEC
Confidence 777775
No 447
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=58.74 E-value=54 Score=32.26 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
++.++++.+.|++-|.| |... .+.+.+.++.+++..|++.+++.-+ . +.+.+..++..|+|++..
T Consensus 199 leqa~ea~~agaDiI~L-----Dn~~---~e~l~~av~~~~~~~~~~~leaSGG-I--~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL-----DKFS---PQQATEIAQIAPSLAPHCTLSLAGG-I--NLNTLKNYADCGIRLFIT 263 (284)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCC---HHHHHHHHHHhhccCCCeEEEEECC-C--CHHHHHHHHhcCCCEEEE
Confidence 45566667889988887 2332 5667778877776667777776443 3 789999999999998754
No 448
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=58.71 E-value=69 Score=29.99 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc-Ccccc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVF 236 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a-Gld~i 236 (376)
+..+..+.++.+.+.|++++++|+.++..-. .| +..++++++++.. ++.+-+ .++.. +.+.+..+.+. |+|.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~-~g--~~~~~i~~i~~~~-~~pvia-~GGi~-~~~di~~~l~~~g~dgv 220 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTK-KG--YDLELIRAVSSAV-NIPVIA-SGGAG-KPEHFVEAFEEGGADAA 220 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCCC-CC--CCHHHHHHHHhhC-CCCEEE-eCCCC-CHHHHHHHHHhCCCCEE
Confidence 4566778888899999999999987643211 12 2456777777653 233332 23332 56777777765 77765
Q ss_pred cc
Q 017179 237 AH 238 (376)
Q Consensus 237 ~h 238 (376)
-.
T Consensus 221 ~v 222 (243)
T cd04731 221 LA 222 (243)
T ss_pred EE
Confidence 43
No 449
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=58.41 E-value=30 Score=34.50 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcc-cH------HHHHHHHHHHHhhCCCcEE
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQ-GS------GHFAQTVRKLKELKPNMLI 211 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~-g~------~~~~elvr~Ik~~~p~i~I 211 (376)
.++.+++++.++.+..+|++-|.|=|+-.+...|. |. .-+...++.||+.+|++.|
T Consensus 57 r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~i 119 (330)
T COG0113 57 RYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVV 119 (330)
T ss_pred eccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEE
Confidence 48999999999999999999999998853333221 11 1367789999999997655
No 450
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=58.35 E-value=83 Score=30.97 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CCCHHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GETPDQVVSTMEKVR 300 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GET~ee~~e~L~~Lr 300 (376)
.+.++.+.+.|+|.+=.+=-|-+- ..-|.+++.++++.+.+... -+.-+|+|. +.+-+|-++..+..+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~-------~~Ls~eEr~~v~~~~v~~~~----grvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGES-------PTLTLEERKEVLEAVVEAVG----GRVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccc-------hhcCHHHHHHHHHHHHHHHC----CCCcEEEecCCCcHHHHHHHHHHHH
Confidence 445667777887754222112120 24678999999999999642 244599999 556999999999999
Q ss_pred HcCCcEEEe-ecCC
Q 017179 301 AAGVDVMTF-GQYM 313 (376)
Q Consensus 301 el~vd~v~~-~qY~ 313 (376)
++|+|-+-+ .+|+
T Consensus 97 ~~Gad~il~v~PyY 110 (299)
T COG0329 97 KLGADGILVVPPYY 110 (299)
T ss_pred hcCCCEEEEeCCCC
Confidence 999985443 3443
No 451
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=58.25 E-value=1.2e+02 Score=28.71 Aligned_cols=72 Identities=14% Similarity=0.278 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
+|.+.|+.+.+. ++++++ +|.+.-.. |...-.+++++|.+. +.+.|.+-- ... +.+.++.+.++|++.+-.+
T Consensus 31 dp~~~a~~~~~~-~~~l~i--vDldga~~-g~~~n~~~i~~i~~~-~~~pv~~gG-GIr-s~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHV--VDLDGAFE-GKPKNLDVVKNIIRE-TGLKVQVGG-GLR-TYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHHHHh-CCEEEE--EECcchhc-CCcchHHHHHHHHhh-CCCCEEEcC-CCC-CHHHHHHHHHCCCCEEEEC
Confidence 577788888887 999999 55542211 222235677777665 334443322 222 6788999999998866443
No 452
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.08 E-value=99 Score=31.44 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=45.5
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee---CC---CCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD---RD---DLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~---r~---dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
+.+.+++.|+.+++.|++.+. ++- |. .+...| +.=.++++++++... +.+ ++--+ +.+.++.+.+.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r--~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~G-l~~--~tev~--d~~~v~~~~~~ 184 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLR--GGAYKPRTSPYAFQGHG-ESALELLAAAREATG-LGI--ITEVM--DAADLEKIAEV 184 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--eeeecCCCCCcccCCch-HHHHHHHHHHHHHcC-CcE--EEeeC--CHHHHHHHHhh
Confidence 578899999999999998876 332 21 111124 334566677776552 322 33333 56778888776
Q ss_pred Cccccccc
Q 017179 232 GLNVFAHN 239 (376)
Q Consensus 232 Gld~i~h~ 239 (376)
+|.+.++
T Consensus 185 -~d~lqIg 191 (352)
T PRK13396 185 -ADVIQVG 191 (352)
T ss_pred -CCeEEEC
Confidence 7888765
No 453
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=58.00 E-value=81 Score=31.31 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH-cCcccccc
Q 017179 160 DEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAH 238 (376)
Q Consensus 160 eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~-aGld~i~h 238 (376)
++..+.++.+.+.|++.|.+.+.+++....+.+ . .+.+++|++.. ++.|- ..++.. +.+.+..+.+ .|+|.+-.
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a-~-~~~i~~ik~~~-~iPVI-~nGgI~-s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEA-E-YDSIRAVKQKV-SIPVI-ANGDIT-DPLKARAVLDYTGADALMI 223 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCc-C-hHHHHHHHHhc-CCcEE-EeCCCC-CHHHHHHHHhccCCCEEEE
Confidence 367788888999999999999887554322212 1 36788887754 23332 234443 5566666665 68888766
Q ss_pred c
Q 017179 239 N 239 (376)
Q Consensus 239 ~ 239 (376)
+
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 4
No 454
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=57.92 E-value=50 Score=33.64 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=53.6
Q ss_pred CCCchhHHHHHHHHHHCC-CcEEEEEeeeCC--C-CCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 156 PPDPDEPTNVAEAIASWG-LDYVVITSVDRD--D-LADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G-~~eIvLTsg~r~--d-l~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.++++|..+.++.+.+.| +.++.++++... . ....+..++....+.++...- +.+- ..+... +++....+.+.
T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pvi-~~G~i~-~~~~Ae~~l~~ 309 (363)
T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPVI-AVGGIN-DPEQAEEILAS 309 (363)
T ss_pred CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCEE-EeCCCC-CHHHHHHHHHc
Confidence 478889999999999999 799999998642 1 211113456666666665432 2221 122111 67888888888
Q ss_pred C-ccccccc
Q 017179 232 G-LNVFAHN 239 (376)
Q Consensus 232 G-ld~i~h~ 239 (376)
| +|.+..+
T Consensus 310 g~aDlVa~g 318 (363)
T COG1902 310 GRADLVAMG 318 (363)
T ss_pred CCCCEEEec
Confidence 7 8988776
No 455
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.91 E-value=1.6e+02 Score=27.89 Aligned_cols=67 Identities=10% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCC-ChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 194 HFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 194 ~~~elvr~Ik~~~p~i~Ie~l~pd~~g-~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.+.+.++.+++..++..|.+ ++.- +.+.++.+.++|+|.+-.+ ..+++.+. ..+.+...+.++.+++
T Consensus 171 ~~~~~i~~lr~~~~~~~i~v---~gGI~~~e~i~~~~~~gaD~vvvG----Sai~~~~~--~~~~~~~~~~~~~~~~ 238 (244)
T PRK13125 171 SVERNIKRVRNLVGNKYLVV---GFGLDSPEDARDALSAGADGVVVG----TAFIEELE--KNGVESALNLLKKIRG 238 (244)
T ss_pred HHHHHHHHHHHhcCCCCEEE---eCCcCCHHHHHHHHHcCCCEEEEC----HHHHHHHH--hcCHHHHHHHHHHHHH
Confidence 34556666766554332221 2211 5777888888888866443 34444443 1235555555555544
No 456
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=57.65 E-value=1.3e+02 Score=27.10 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCcE-EEEecCCCCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 017179 195 FAQTVRKLKELKPNML-IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPA 273 (376)
Q Consensus 195 ~~elvr~Ik~~~p~i~-Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~ 273 (376)
+.+.++++++..|... |++-.- +.+.+.+..++|+|++-. .+-+.++.-++++.+++..+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~----~~ee~~ea~~~g~d~I~l--------------D~~~~~~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE----NLEEAEEALEAGADIIML--------------DNMSPEDLKEAVEELRELNPR 127 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES----SHHHHHHHHHTT-SEEEE--------------ES-CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCceEEEEcC----CHHHHHHHHHhCCCEEEe--------------cCcCHHHHHHHHHHHhhcCCc
Confidence 5677788888776543 544332 467788888999998743 244667777888877776554
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 274 GTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 274 Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
+.+-.+. |=|.+.+ ..+.+.++|++.+|-
T Consensus 128 -v~ie~SG----GI~~~ni----~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 128 -VKIEASG----GITLENI----AEYAKTGVDVISVGS 156 (169)
T ss_dssp -SEEEEES----SSSTTTH----HHHHHTT-SEEEECH
T ss_pred -EEEEEEC----CCCHHHH----HHHHhcCCCEEEcCh
Confidence 3332221 3344333 334578999998873
No 457
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.54 E-value=46 Score=33.87 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=58.1
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCC----CCc--ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDD----LAD--QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA 229 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~d----l~d--~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~ 229 (376)
.++++|.++.++.+.+.|++++.+++|.... .+. .+...+.+.++.||+.. ++.|- ..+.+. +.+..+.+.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi-~~G~i~-~~~~~~~~l 324 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVI-MAGRME-DPELASEAI 324 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCEE-EeCCCC-CHHHHHHHH
Confidence 3678999999999999999999999886321 111 11234556777777754 23322 344443 566666666
Q ss_pred HcC-ccccccc--ccchHHHHHhhc
Q 017179 230 KSG-LNVFAHN--IETVEELQSAVR 251 (376)
Q Consensus 230 ~aG-ld~i~h~--lEtv~~l~~~vr 251 (376)
+.| +|.+..+ +=..+.+.+++.
T Consensus 325 ~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 325 NEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred HcCCCCeeeechHhHhCccHHHHHH
Confidence 655 7888776 222235555555
No 458
>PRK01362 putative translaldolase; Provisional
Probab=57.51 E-value=1.3e+02 Score=28.37 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccccccchHHHH
Q 017179 168 AIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQ 247 (376)
Q Consensus 168 al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~~l~ 247 (376)
..++.|..+|-.=-|.-+|....|...+.++.+.+++.. ...+++...|+ +.+.+..+..+|+|.+... ..++
T Consensus 117 ~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~--~~tkilaAS~r-~~~~v~~~~~~G~d~iTi~----~~vl 189 (214)
T PRK01362 117 LAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYG--FDTEIIAASVR-HPMHVLEAALAGADIATIP----YKVI 189 (214)
T ss_pred HHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcC--CCcEEEEeecC-CHHHHHHHHHcCCCEEecC----HHHH
Confidence 344568888766555445554446666666666665543 33445666666 6677777888999988654 3566
Q ss_pred Hhhc
Q 017179 248 SAVR 251 (376)
Q Consensus 248 ~~vr 251 (376)
+++-
T Consensus 190 ~~l~ 193 (214)
T PRK01362 190 KQLF 193 (214)
T ss_pred HHHH
Confidence 6554
No 459
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=57.23 E-value=20 Score=34.76 Aligned_cols=175 Identities=13% Similarity=0.156 Sum_probs=80.8
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEEecCCCCC-----ChHHHHHHHH
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEALVPDFRG-----NNGCVREVAK 230 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~l~pd~~g-----~~e~l~~L~~ 230 (376)
...+.+.+..+.+.+.|+++|++++-+- ++ |. .|.++.+.+++.... -.|.+-.|-+.. +.+.++.+.+
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhi--ip--G~-Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~ 129 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHI--IP--GE-EYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAE 129 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--S--CS--SH-HHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecce--eC--cH-hHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHH
Confidence 3456667777888999999999999753 22 22 244555555443221 244444454321 3555555544
Q ss_pred cCcccccccccchHHHHHhhcCC-CCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 231 SGLNVFAHNIETVEELQSAVRDH-RANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 231 aGld~i~h~lEtv~~l~~~vr~r-~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+=.+.++-.- -++-.=.|... .+........|+..-+.. | ..++.||--|-.-++.+.+..|++.++..|.+
T Consensus 130 aL~~~~~~~~--~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~--~---~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L 202 (262)
T PF06180_consen 130 ALAEEFPKKR--KDEAVVLMGHGTPHPANAAYSALQAMLKKH--G---YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHL 202 (262)
T ss_dssp HHHCCS-TT---TTEEEEEEE---SCHHHHHHHHHHHHHHCC--T----TTEEEEETTSSSBHHHHHHHHHHHT-SEEEE
T ss_pred HHHHhccccC--CCCEEEEEeCCCCCCccHHHHHHHHHHHhC--C---CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEE
Confidence 4222222100 00000012200 111222333444443321 1 24567777555556888889999999988888
Q ss_pred ecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhh
Q 017179 310 GQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRY 345 (376)
Q Consensus 310 ~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~ 345 (376)
.++|-=.-.| +.+-+..++-+-|+..-.+.||..
T Consensus 203 ~PlMlVAGdH--a~nDmaGde~dSWks~L~~~G~~v 236 (262)
T PF06180_consen 203 IPLMLVAGDH--AKNDMAGDEEDSWKSRLEAAGFEV 236 (262)
T ss_dssp EEESSS--HH--HHCCCCSSSTTSHHHHHHHTT-EE
T ss_pred Eecccccchh--hhhhhcCCCcchHHHHHHHCCCEE
Confidence 7776321112 122222234456888888889864
No 460
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=57.20 E-value=1.4e+02 Score=26.61 Aligned_cols=132 Identities=11% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccH----HHHHHHHHHHHhhCCCcEEEEe-cCCCCCChHHHHHHHHcCcccccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGS----GHFAQTVRKLKELKPNMLIEAL-VPDFRGNNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~----~~~~elvr~Ik~~~p~i~Ie~l-~pd~~g~~e~l~~L~~aGld~i~h 238 (376)
+.++++.+.|. +|-.=|-.+.++..... ..+....+.|++... .....+ .|...-+...++.+.+.|...+.-
T Consensus 49 ~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g-~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w 126 (191)
T TIGR02764 49 ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTG-KKPTLFRPPSGAFNKAVLKAAESLGYTVVHW 126 (191)
T ss_pred HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhC-CCCCEEECCCcCCCHHHHHHHHHcCCeEEEe
Confidence 34566777774 55444444554433222 234444445555432 222223 332222788899999999988877
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEec-CC----CHHHHHHHHHHHHHcCCcEEEeecC
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGC-GE----TPDQVVSTMEKVRAAGVDVMTFGQY 312 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGl-GE----T~ee~~e~L~~Lrel~vd~v~~~qY 312 (376)
++++.+-. ..+.++.. +.+.+....| +||+-+ |+ |.+.+...+..|++.|..++++.+.
T Consensus 127 ~~~~~D~~-------~~~~~~i~---~~~~~~~~~g-----~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~~l 190 (191)
T TIGR02764 127 SVDSRDWK-------NPGVESIV---DRVVKNTKPG-----DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTISEL 190 (191)
T ss_pred cCCCCccC-------CCCHHHHH---HHHHhcCCCC-----CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHHHh
Confidence 77655410 12333332 2222211123 467766 44 5677778888999999999988643
No 461
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.06 E-value=1.9e+02 Score=27.88 Aligned_cols=77 Identities=8% Similarity=0.050 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC-cEEEE-ecCCCC-CChHHHHHHHHcCc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN-MLIEA-LVPDFR-GNNGCVREVAKSGL 233 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~-i~Ie~-l~pd~~-g~~e~l~~L~~aGl 233 (376)
.+++.+.+.++.+.+.|++.|.|-=-..-- -...+.++++.|++..+. +.|++ ..-++. +....+. -.++|+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~la-A~~aGa 209 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSM----YPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLE-AIELGV 209 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCC----CHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHH-HHHcCC
Confidence 468899999999999999998873111111 145688999999887653 66664 232331 1122333 347888
Q ss_pred ccccc
Q 017179 234 NVFAH 238 (376)
Q Consensus 234 d~i~h 238 (376)
+.+..
T Consensus 210 ~~vd~ 214 (266)
T cd07944 210 EIIDA 214 (266)
T ss_pred CEEEE
Confidence 87644
No 462
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=57.03 E-value=1.9e+02 Score=28.58 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=81.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC-CCcEEEEecCCCCC--Ch-HHHHHHHHcCc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK-PNMLIEALVPDFRG--NN-GCVREVAKSGL 233 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~-p~i~Ie~l~pd~~g--~~-e~l~~L~~aGl 233 (376)
++++..+.++.+.+.|++.+-|-.+..+.+ ..+.+.-.+.|++|++.. |++.+.+ |.++ +. +.++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-~~~~~~d~~~v~~ir~~~g~~~~l~v---DaN~~~~~~~a~~~~~~l-- 212 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-GEDLREDLARVRAVREAVGPDVDLMV---DANGRWDLAEAIRLARAL-- 212 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-hHHHHHHHHHHHHHHHhhCCCCEEEE---ECCCCCCHHHHHHHHHHh--
Confidence 578888899988899999988854432111 011344578888998876 4554433 2221 32 333332221
Q ss_pred ccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCC
Q 017179 234 NVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYM 313 (376)
Q Consensus 234 d~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~ 313 (376)
+-+ +++-+++- +. .. .++.++.+++. +++=|..||+..+..+..+.++.-.+|++.+-
T Consensus 213 ~~~--~i~~iEqP---~~--~~----~~~~~~~l~~~--------~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k--- 270 (357)
T cd03316 213 EEY--DLFWFEEP---VP--PD----DLEGLARLRQA--------TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPD--- 270 (357)
T ss_pred Ccc--CCCeEcCC---CC--cc----CHHHHHHHHHh--------CCCCEEeccccccHHHHHHHHHhCCCCEEecC---
Confidence 111 22222211 11 11 23444555552 22334557887777777777777778888763
Q ss_pred CCCCCCCCCcccCChHHHHHHHHHHHHHhhhhh
Q 017179 314 RPSKRHMPVSEYITPEAFERYRALGMEMGFRYV 346 (376)
Q Consensus 314 ~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~ 346 (376)
|.+-+- -.+...+..+|.+.|..++
T Consensus 271 -~~~~GG-------i~~~~~i~~~a~~~g~~~~ 295 (357)
T cd03316 271 -VTKVGG-------ITEAKKIAALAEAHGVRVA 295 (357)
T ss_pred -ccccCC-------HHHHHHHHHHHHHcCCeEe
Confidence 322111 1244556666777776544
No 463
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=56.81 E-value=87 Score=31.06 Aligned_cols=103 Identities=12% Similarity=0.196 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHH-HHHcCccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVRE-VAKSGLNVFA 237 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~-L~~aGld~i~ 237 (376)
.++..+.++.+.+.|++.+.|.+..+.....+...++ +.+++|++.. ++.| +..+|.. +.+.+.. +...|+|.+-
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~-~iPV-i~nGdI~-t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRL-TIPV-IANGEIW-DWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhc-CCcE-EEeCCcC-CHHHHHHHHhccCCCEEE
Confidence 3567788999999999999998776533211111122 6788888754 3444 2345554 4455555 4467888876
Q ss_pred cc--ccchHHHHHhhcC--CCCCHHHHHHHHH
Q 017179 238 HN--IETVEELQSAVRD--HRANFKQSLDVLM 265 (376)
Q Consensus 238 h~--lEtv~~l~~~vr~--r~~t~e~~L~vl~ 265 (376)
.+ +=.-+.+++.++. +..++++.++++.
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 65 1122466665541 1234555554444
No 464
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=56.80 E-value=62 Score=32.75 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=29.6
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEE
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIE 212 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie 212 (376)
.+++.+.+.++++.+.|++.|.|-=-.. + .-...+.++++.|++.+|...|+
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G--~--a~P~~v~~lv~~l~~~~~~~~i~ 245 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIG--V--GTPGTVVPMLEAVMAVVPVDKLA 245 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcC--C--cCHHHHHHHHHHHHHhCCCCeEE
Confidence 4667777777777777777776620000 0 01345667777777666543443
No 465
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=56.78 E-value=1.7e+02 Score=28.53 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccccc-cccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAH-NIET 242 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h-~lEt 242 (376)
..++.+...|+++|+|-.-+.+ + +.+.+..+++.+...-....|++ |.. +...++++.|+|.+.+=. +++|
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~-~---~~~~l~~~i~a~~~~g~~~lVRv--p~~--~~~~i~r~LD~GA~GIivP~V~s 101 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAP-N---TIQDLYHQLQAIAPYASQPVIRP--VEG--SKPLIKQVLDIGAQTLLIPMVDT 101 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCC-C---CHHHHHHHHHHHHhcCCCeEEEC--CCC--CHHHHHHHhCCCCCeeEecCcCC
Confidence 3466777899999998655432 2 25567778888764322223333 433 567899999999985422 3677
Q ss_pred hHHHHHhh---c--C---CCCCH-----HHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 243 VEELQSAV---R--D---HRANF-----KQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 243 v~~l~~~v---r--~---r~~t~-----e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
+++....+ + | |+... ..|-..-+.+.... . .+-.-+| -||.+-+.+.=+.+.--++|.+.|
T Consensus 102 aeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an-~--~~~vi~q---iEt~~a~~n~~~I~~~~gvd~i~~ 175 (267)
T PRK10128 102 AEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQAN-D--SLCLLVQ---VESKTALDNLDEILDVEGIDGVFI 175 (267)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhc-c--ccEEEEE---ECCHHHHHhHHHHhCCCCCCEEEE
Confidence 66443332 2 1 11110 11111112222211 0 1222222 399988877666665557999999
Q ss_pred ecC
Q 017179 310 GQY 312 (376)
Q Consensus 310 ~qY 312 (376)
|++
T Consensus 176 G~~ 178 (267)
T PRK10128 176 GPA 178 (267)
T ss_pred CHH
Confidence 854
No 466
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=56.60 E-value=92 Score=30.90 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHHHHHHcCcccccccccch-HHHHHhhcC--CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHH
Q 017179 224 CVREVAKSGLNVFAHNIETV-EELQSAVRD--HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVR 300 (376)
Q Consensus 224 ~l~~L~~aGld~i~h~lEtv-~~l~~~vr~--r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lr 300 (376)
..+.+.+.|.|.+..|+-.- +.+.+.-.+ --.+.+...++++.+++.. ++++..-|=.|..++.++..+.++.+.
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR~G~~~~~~~~~~~a~~le 159 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNCVEIAQLAE 159 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEEccccCCcchHHHHHHHHH
Confidence 34556678888888887642 233222100 0124677788888887754 234444444677666678899999999
Q ss_pred HcCCcEEEeecCCCCCCCCCCCcccCChHHHHHHHHHHHHHhhhhhccc
Q 017179 301 AAGVDVMTFGQYMRPSKRHMPVSEYITPEAFERYRALGMEMGFRYVASG 349 (376)
Q Consensus 301 el~vd~v~~~qY~~P~~~~~~v~~~v~pe~~~~l~~~a~~~gf~~~~sg 349 (376)
+.|++.+++..-.++ +. +--+..++.++++........+++|
T Consensus 160 ~~G~d~i~vh~rt~~-----~~--~~G~a~~~~i~~ik~~~~iPVI~nG 201 (321)
T PRK10415 160 DCGIQALTIHGRTRA-----CL--FNGEAEYDSIRAVKQKVSIPVIANG 201 (321)
T ss_pred HhCCCEEEEecCccc-----cc--cCCCcChHHHHHHHHhcCCcEEEeC
Confidence 999999988521111 11 1011124455555555555556666
No 467
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=56.54 E-value=1.6e+02 Score=30.01 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=74.5
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhC--------CCcEEEEecCCCCCChHHHHHHHHcCccc
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELK--------PNMLIEALVPDFRGNNGCVREVAKSGLNV 235 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~--------p~i~Ie~l~pd~~g~~e~l~~L~~aGld~ 235 (376)
+.|.++++.|.=.|+ ++ ... .+..++.++.+|+.+ ..+.+.+.++-...+.+.++.|.++|+|.
T Consensus 52 ~mAiama~~Gglgvi----h~-~~~---~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ 123 (352)
T PF00478_consen 52 EMAIAMARLGGLGVI----HR-NMS---IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDV 123 (352)
T ss_dssp HHHHHHHHTTSEEEE----ES-SSC---HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHhcCCcee----cC-CCC---HHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCE
Confidence 668888888653332 22 232 455677888887643 23555544433212468899999999998
Q ss_pred ccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 236 FAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 236 i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
+-. +++ ...-+..++.++.+++.+|. + .+|.|=--|.+...+ |-+.|+|.|-+| +=|
T Consensus 124 ivI--D~a----------~g~s~~~~~~ik~ik~~~~~-~----~viaGNV~T~e~a~~----L~~aGad~vkVG--iGp 180 (352)
T PF00478_consen 124 IVI--DSA----------HGHSEHVIDMIKKIKKKFPD-V----PVIAGNVVTYEGAKD----LIDAGADAVKVG--IGP 180 (352)
T ss_dssp EEE--E-S----------STTSHHHHHHHHHHHHHSTT-S----EEEEEEE-SHHHHHH----HHHTT-SEEEES--SSS
T ss_pred EEc--ccc----------CccHHHHHHHHHHHHHhCCC-c----eEEecccCCHHHHHH----HHHcCCCEEEEe--ccC
Confidence 743 221 22345567889999998764 4 455555567776655 566899998887 556
Q ss_pred C
Q 017179 316 S 316 (376)
Q Consensus 316 ~ 316 (376)
+
T Consensus 181 G 181 (352)
T PF00478_consen 181 G 181 (352)
T ss_dssp S
T ss_pred C
Confidence 4
No 468
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.54 E-value=54 Score=32.62 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCCchhHHHHHHHHHHCCCcEEEEEeeeCCCCC-----c----ccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHH
Q 017179 156 PPDPDEPTNVAEAIASWGLDYVVITSVDRDDLA-----D----QGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVR 226 (376)
Q Consensus 156 ~l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~-----d----~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~ 226 (376)
.++++|.++.++.+.+.|++.|.++++...... + ....++.+..+.||+.. ++.|-+ ...+. +.+..+
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~-~G~i~-t~~~a~ 308 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMV-TGGFR-TRAAME 308 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEE-eCCCC-CHHHHH
Confidence 368889999999999999999999887532111 0 01224567888888765 243332 22332 566676
Q ss_pred HHHHcC-ccccccc
Q 017179 227 EVAKSG-LNVFAHN 239 (376)
Q Consensus 227 ~L~~aG-ld~i~h~ 239 (376)
.+.+.| +|.+..+
T Consensus 309 ~~l~~g~aD~V~lg 322 (338)
T cd04733 309 QALASGAVDGIGLA 322 (338)
T ss_pred HHHHcCCCCeeeeC
Confidence 666665 7888765
No 469
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=56.40 E-value=1.8e+02 Score=27.60 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCCCCchhHHHHHHHHHH-CCCcEEEEEee--eCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH
Q 017179 154 PPPPDPDEPTNVAEAIAS-WGLDYVVITSV--DRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK 230 (376)
Q Consensus 154 ~~~l~~eEi~~~a~al~~-~G~~eIvLTsg--~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~ 230 (376)
+.+++.+|+...+..+.+ +|.+.|-|=.+ -.+..+ .++++.+++...++.+.+ +.=..+.+.++.+.+
T Consensus 129 ~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~-------~e~i~~v~~~~~~~pl~v--GGGIrs~e~a~~l~~ 199 (223)
T TIGR01768 129 PIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP-------PELVAEVKKVLDKARLFV--GGGIRSVEKAREMAE 199 (223)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC-------HHHHHHHHHHcCCCCEEE--ecCCCCHHHHHHHHH
Confidence 445788888777665555 59998877633 222111 356777777653444432 211127899999999
Q ss_pred cCccccccc
Q 017179 231 SGLNVFAHN 239 (376)
Q Consensus 231 aGld~i~h~ 239 (376)
+|+|.+-.+
T Consensus 200 aGAD~VVVG 208 (223)
T TIGR01768 200 AGADTIVTG 208 (223)
T ss_pred cCCCEEEEC
Confidence 999987554
No 470
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=56.33 E-value=72 Score=32.27 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=62.0
Q ss_pred EEEecCCCCCChHHHHHHHHcCcccccccccchH-HHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCH
Q 017179 211 IEALVPDFRGNNGCVREVAKSGLNVFAHNIETVE-ELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETP 289 (376)
Q Consensus 211 Ie~l~pd~~g~~e~l~~L~~aGld~i~h~lEtv~-~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ 289 (376)
++.+.|-- +.+.+....++|+|.+-.+..... +.+. ...+.+++.+.++.||+.... +.+..++++ +.+..
T Consensus 7 ~ell~pag--~l~~l~~ai~~GADaVY~G~~~~~~R~~a----~nfs~~~l~e~i~~ah~~gkk-~~V~~N~~~-~~~~~ 78 (347)
T COG0826 7 PELLAPAG--NLEDLKAAIAAGADAVYIGEKEFGLRRRA----LNFSVEDLAEAVELAHSAGKK-VYVAVNTLL-HNDEL 78 (347)
T ss_pred ceeecCCC--CHHHHHHHHHcCCCEEEeCCccccccccc----ccCCHHHHHHHHHHHHHcCCe-EEEEecccc-ccchh
Confidence 34555533 678889999999998766644222 2221 136789999999999995322 233444332 34555
Q ss_pred HHHHHHHHHHHHcCCcEEEee
Q 017179 290 DQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 290 ee~~e~L~~Lrel~vd~v~~~ 310 (376)
+.+.+.+++|.++++|-|-++
T Consensus 79 ~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 79 ETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred hHHHHHHHHHHHcCCCEEEEc
Confidence 668999999999999987664
No 471
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=56.26 E-value=2.2e+02 Score=28.31 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEEec-CC-CCCChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCH-HHHHHHHHHH
Q 017179 191 GSGHFAQTVRKLKELKPNMLIEALV-PD-FRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANF-KQSLDVLMMA 267 (376)
Q Consensus 191 g~~~~~elvr~Ik~~~p~i~Ie~l~-pd-~~g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~-e~~L~vl~~a 267 (376)
|.+.|.+.++.+++.. +..|-+.+ +. ...-.+.++.+.++|+|.+..|+-..+. -+... +... +...++++.+
T Consensus 83 g~~~~~~~i~~~~~~~-~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~~~~~--g~~~~~~~~eiv~~v 158 (325)
T cd04739 83 GPEEYLELIRRAKRAV-SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT-DPDIS--GAEVEQRYLDILRAV 158 (325)
T ss_pred CHHHHHHHHHHHHhcc-CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-CCCcc--cchHHHHHHHHHHHH
Confidence 5678888887776543 23332222 11 0001356677778899998888754210 01111 2222 4556888888
Q ss_pred HHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 268 KDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 268 k~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
++....-+.+|.+. ...++.+..+.+.+.++|.+.+.+
T Consensus 159 ~~~~~iPv~vKl~p------~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 159 KSAVTIPVAVKLSP------FFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred HhccCCCEEEEcCC------CccCHHHHHHHHHHcCCCeEEEEc
Confidence 77431113445332 223688888889999999888864
No 472
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=56.18 E-value=43 Score=32.07 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHH-HcCccccc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVA-KSGLNVFA 237 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~-~aGld~i~ 237 (376)
...+.+.++.+.+.|+.++++|+.+++... .|. -.++++++++.. .+.|-+ .++.. +.+.+..+. ..|++.+-
T Consensus 151 ~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~-~G~--d~~~i~~~~~~~-~ipvIa-sGGv~-s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 151 KKDPLELAKEYEALGAGEILLNSIDRDGTM-KGY--DLELLKSFRNAL-KIPLIA-LGGAG-SLDDIVEAILNLGADAAA 224 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEccCCCCCc-CCC--CHHHHHHHHhhC-CCCEEE-eCCCC-CHHHHHHHHHHCCCCEEE
Confidence 344567788888999999999999876543 232 356677777653 344433 23332 667777776 78888654
Q ss_pred c
Q 017179 238 H 238 (376)
Q Consensus 238 h 238 (376)
.
T Consensus 225 v 225 (258)
T PRK01033 225 A 225 (258)
T ss_pred E
Confidence 3
No 473
>PLN02334 ribulose-phosphate 3-epimerase
Probab=56.07 E-value=78 Score=29.57 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHCC-CcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 161 EPTNVAEAIASWG-LDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 161 Ei~~~a~al~~~G-~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
.+.+.++++...| +++|.+-++....-...-...-.+.++++++..+++.|.+ .+.. +.+.+..+.++|+|.+..+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a-~GGI--~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV-DGGV--GPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE-eCCC--CHHHHHHHHHcCCCEEEEC
Confidence 3455566666664 9999886665211111001234556677776655554433 3334 6889999999999988654
No 474
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=56.02 E-value=68 Score=31.82 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=50.4
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeC--CC-----CC--cc---cHH---HHHHHHHHHHhhCC-CcEEEEecCCCCCC
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDR--DD-----LA--DQ---GSG---HFAQTVRKLKELKP-NMLIEALVPDFRGN 221 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r--~d-----l~--d~---g~~---~~~elvr~Ik~~~p-~i~Ie~l~pd~~g~ 221 (376)
+.+++.+.++++.+.|++.|++++... ++ .. .+ |.. .-.+.++.+++..+ ++.|-..-+-. +
T Consensus 214 ~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~--t 291 (327)
T cd04738 214 SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS--S 291 (327)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC--C
Confidence 445889999999999999999987532 11 00 01 111 23577788877653 45554433333 5
Q ss_pred hHHHHHHHHcCccccccc
Q 017179 222 NGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~ 239 (376)
.+.+.++..+|+|.+...
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 566666667999988764
No 475
>PRK13660 hypothetical protein; Provisional
Probab=55.98 E-value=18 Score=33.27 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCC
Q 017179 162 PTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPD 217 (376)
Q Consensus 162 i~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd 217 (376)
+.+.+..+.+.|++.+++.|..+-| -..++++-.+|+.+|++.+.+.+|-
T Consensus 31 L~~~l~~~~e~G~~wfi~ggalG~d------~wAaEvvl~LK~~yp~lkL~~~~PF 80 (182)
T PRK13660 31 IKRKLIALLEEGLEWVIISGQLGVE------LWAAEVVLELKEEYPDLKLAVITPF 80 (182)
T ss_pred HHHHHHHHHHCCCCEEEECCcchHH------HHHHHHHHHHHhhCCCeEEEEEeCc
Confidence 3345566667898876554433322 2467899999999999999999983
No 476
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=55.86 E-value=2.1e+02 Score=28.92 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHHHHHCCCcEEEE
Q 017179 165 VAEAIASWGLDYVVI 179 (376)
Q Consensus 165 ~a~al~~~G~~eIvL 179 (376)
.++.+.+.|+..|.|
T Consensus 105 ~l~~l~~~G~nrisl 119 (370)
T PRK06294 105 YIRALALTGINRISI 119 (370)
T ss_pred HHHHHHHCCCCEEEE
Confidence 345566667766654
No 477
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=55.60 E-value=83 Score=24.54 Aligned_cols=39 Identities=13% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 196 AQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 196 ~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.++++.|++..|.+.+=+++... +.+....+.++|++.|
T Consensus 59 ~~~~~~i~~~~~~~~ii~~t~~~--~~~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 59 LELLEQIRQINPSIPIIVVTDED--DSDEVQEALRAGADDY 97 (112)
T ss_dssp HHHHHHHHHHTTTSEEEEEESST--SHHHHHHHHHTTESEE
T ss_pred cccccccccccccccEEEecCCC--CHHHHHHHHHCCCCEE
Confidence 56778888777888888788655 5677778889987755
No 478
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=55.55 E-value=1.7e+02 Score=29.17 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cc--c------cHHHHHHHHHHHHhhCCC--cEEEEecC--CC-CCCh
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDL-AD--Q------GSGHFAQTVRKLKELKPN--MLIEALVP--DF-RGNN 222 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d--~------g~~~~~elvr~Ik~~~p~--i~Ie~l~p--d~-~g~~ 222 (376)
-+|+...+.|+.+.++|++.|-|=-|-.-+. .. . ..+.+.++|+++++..++ ++|.+=++ +. .-..
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~ 155 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILAL 155 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHH
Confidence 4677778888888999999998877632111 00 1 146899999999987742 44443222 11 0124
Q ss_pred HHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHHH
Q 017179 223 GCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKVR 300 (376)
Q Consensus 223 e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~Lr 300 (376)
+..+.+.++|++.+...--| .... ++..--++.|..+++..+. + .++|=| -|.++..++|+
T Consensus 156 ~ia~~~~~~g~~~ltVHgRt----r~~~----y~~~ad~~~I~~vk~~~~~-i-----pvi~NGdI~s~~~a~~~l~--- 218 (323)
T COG0042 156 EIARILEDAGADALTVHGRT----RAQG----YLGPADWDYIKELKEAVPS-I-----PVIANGDIKSLEDAKEMLE--- 218 (323)
T ss_pred HHHHHHHhcCCCEEEEeccc----HHhc----CCCccCHHHHHHHHHhCCC-C-----eEEeCCCcCCHHHHHHHHH---
Confidence 67788888898877543222 1111 2222345667777775432 2 233344 37777766654
Q ss_pred HcCCcEEEeec
Q 017179 301 AAGVDVMTFGQ 311 (376)
Q Consensus 301 el~vd~v~~~q 311 (376)
..++|-|-+|.
T Consensus 219 ~tg~DgVMigR 229 (323)
T COG0042 219 YTGADGVMIGR 229 (323)
T ss_pred hhCCCEEEEcH
Confidence 46788877763
No 479
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=55.47 E-value=1.3e+02 Score=29.86 Aligned_cols=134 Identities=21% Similarity=0.280 Sum_probs=70.4
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE--ecCCCCC-ChHHH-HHHHHcCcccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG-NNGCV-REVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~--l~pd~~g-~~e~l-~~L~~aGld~i~h 238 (376)
.+.|+...+.|+--.+ |-.+..+.+ .+ +.+.++.+++..|+..+-+ ..+...+ +.+.+ +.+...++|.+..
T Consensus 72 ~~La~~a~~~g~~~~~--Gs~~~~~~~--~e-~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel 146 (326)
T cd02811 72 RNLAEAAEELGIAMGV--GSQRAALED--PE-LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAI 146 (326)
T ss_pred HHHHHHHHHcCCCeEe--cCchhhccC--hh-hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE
Confidence 4556666777753221 111111211 22 3467777777776544322 2222111 33333 3333456676666
Q ss_pred cccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Q 017179 239 NIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFG 310 (376)
Q Consensus 239 ~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~ 310 (376)
++....++...- ...+++.|++.|+.+++..+--+.+| ++|+|-|. +..+.|.+.|+|.|.+.
T Consensus 147 ~l~~~q~~~~~~--~~~df~~~~~~i~~l~~~~~vPVivK---~~g~g~s~----~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 147 HLNPLQEAVQPE--GDRDFRGWLERIEELVKALSVPVIVK---EVGFGISR----ETAKRLADAGVKAIDVA 209 (326)
T ss_pred eCcchHhhcCCC--CCcCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCCH----HHHHHHHHcCCCEEEEC
Confidence 553222211111 23368889999999998532113344 35777773 55677888999998874
No 480
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=55.33 E-value=43 Score=35.91 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHH-cCcc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLN 234 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~-aGld 234 (376)
++++.++++.++|+.+|++|+.++|.... |.+ .++++.|++.. .+.|-++-+- ++.+.+..+.. .|++
T Consensus 439 ~~~~~~~~~~~~Gageil~t~id~DGt~~-G~d--~~l~~~v~~~~-~ipviasGG~--g~~~d~~~~~~~~~~~ 507 (538)
T PLN02617 439 GAYELAKAVEELGAGEILLNCIDCDGQGK-GFD--IELVKLVSDAV-TIPVIASSGA--GTPEHFSDVFSKTNAS 507 (538)
T ss_pred CHHHHHHHHHhcCCCEEEEeecccccccc-CcC--HHHHHHHHhhC-CCCEEEECCC--CCHHHHHHHHhcCCcc
Confidence 45667888889999999999999875532 322 56777777653 3555444432 25566655554 4544
No 481
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=55.11 E-value=1.8e+02 Score=27.13 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecC----CCCCC-------hHHHHHHHHcC
Q 017179 164 NVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVP----DFRGN-------NGCVREVAKSG 232 (376)
Q Consensus 164 ~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~p----d~~g~-------~e~l~~L~~aG 232 (376)
+-+.++.+.|.+.|-|-+ ++..+|...=..+++.+++.. ++.|.+++- ||.-+ .+.++.+++.|
T Consensus 11 ~~a~~A~~~GAdRiELc~----~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~G 85 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCS----NLEVGGLTPSLGLIRQAREAV-DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELG 85 (201)
T ss_dssp HHHHHHHHTT-SEEEEEB----TGGGT-B---HHHHHHHHHHT-TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECC----CccCCCcCcCHHHHHHHHhhc-CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence 345566789999999976 344455444456777777643 577777652 55444 44567778888
Q ss_pred cccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEE
Q 017179 233 LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMT 308 (376)
Q Consensus 233 ld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~ 308 (376)
+|.+-.+.=+.+ ...+.+.--++++.++ |+.++-|. -|-++.+ ..+.++.|.++|++.|-
T Consensus 86 adG~VfG~L~~d--------g~iD~~~~~~Li~~a~-----~~~~tFHR--AfD~~~d-~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 86 ADGFVFGALTED--------GEIDEEALEELIEAAG-----GMPVTFHR--AFDEVPD-PEEALEQLIELGFDRVL 145 (201)
T ss_dssp -SEEEE--BETT--------SSB-HHHHHHHHHHHT-----TSEEEE-G--GGGGSST-HHHHHHHHHHHT-SEEE
T ss_pred CCeeEEEeECCC--------CCcCHHHHHHHHHhcC-----CCeEEEeC--cHHHhCC-HHHHHHHHHhcCCCEEE
Confidence 887655421111 1223333334444442 46666665 4545543 66788889999998663
No 482
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=55.01 E-value=60 Score=31.65 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG 232 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG 232 (376)
++.+.+....+.|+.++++|.+++|..- .|.+ .++++.+.+. +.+.|-+.-+- ++.+.+..|++.|
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGtl-~G~d--~el~~~l~~~-~~ipVIASGGv--~sleDi~~L~~~g 229 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGKR-LGID--EELVALLGEH-SPIPVTYAGGV--RSLDDLERVKVAG 229 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCcc-cCCC--HHHHHHHHhh-CCCCEEEECCC--CCHHHHHHHHHcC
Confidence 3445566677889999999999987543 2222 5677777765 34555433322 2678888898876
No 483
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=55.00 E-value=48 Score=30.95 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCccccccc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHN 239 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i~h~ 239 (376)
++++.++.+.+.|++++++|+.+++... .|. -.++++++.+..+ +.|-+. +... +.+.+..+.++|++.+..+
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~--~~~~i~~i~~~~~-iPvia~-GGI~-~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLL-EGV--NTEPVKELVDSVD-IPVIAS-GGVT-TLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCc-CCC--CHHHHHHHHHhCC-CCEEEe-CCCC-CHHHHHHHHHcCCCEEEEE
Confidence 5677788888999999999998654222 222 2356777766542 444322 2222 5677888999998876553
No 484
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=54.99 E-value=2.5e+02 Score=28.60 Aligned_cols=179 Identities=12% Similarity=0.158 Sum_probs=104.9
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcCcccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVF 236 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aGld~i 236 (376)
.+.+.+..+++++.+.+.--|+-++...-.+ .|...+..+++.+.+..+.+.|- +.-|+-.+.+.+..-.++|-.++
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~--~g~~~~~~~~~~~ae~~~~VPVa-lHLDHg~~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASRGARSY--AGAPFLRHLILAAIEEYPHIPVV-MHQDHGNSPATCQRAIQLGFTSV 100 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhh--CCHHHHHHHHHHHHHhCCCCcEE-EECCCCCCHHHHHHHHHcCCCEE
Confidence 4577788888888888887777666543222 34677888998888766444443 45566557788888888886654
Q ss_pred cccccchHHHHHhhc---CCCCCHHHHHHHHHHHHHhCCCCceEE--EeEEEecC-----CCH----------H----HH
Q 017179 237 AHNIETVEELQSAVR---DHRANFKQSLDVLMMAKDYVPAGTLTK--TSIMLGCG-----ETP----------D----QV 292 (376)
Q Consensus 237 ~h~lEtv~~l~~~vr---~r~~t~e~~L~vl~~ak~~~p~Gi~tk--t~imvGlG-----ET~----------e----e~ 292 (376)
++|.+. ++.-. |-..+.+...++++.||.. |+.|- -+.|-|.. +.+ + +-
T Consensus 101 --MiDgS~--l~~~~~~~p~eENI~~Tkevve~Ah~~---GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~P 173 (347)
T TIGR01521 101 --MMDGSL--REDAKTPADYDYNVRVTAEVVAFAHAV---GASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDP 173 (347)
T ss_pred --eecCcC--CcccCCCCCHHHHHHHHHHHHHHHHHc---CCeEEEEeeecccccccccccccCcccccccchhhcCCCH
Confidence 344432 00000 0012345566788888873 55443 23332220 011 1 34
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCCCCCCCcccCCh----HHHHHHHHHHHHH-hhhhh---ccc
Q 017179 293 VSTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITP----EAFERYRALGMEM-GFRYV---ASG 349 (376)
Q Consensus 293 ~e~L~~Lrel~vd~v~~~qY~~P~~~~~~v~~~v~p----e~~~~l~~~a~~~-gf~~~---~sg 349 (376)
.+..+|+++.++|.+-+. + +.-|-.-...++| =.|++|+++.... .+..| .||
T Consensus 174 eeA~~Fv~~TgvD~LAva--i--Gt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG 234 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVA--I--GTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSS 234 (347)
T ss_pred HHHHHHHHHHCcCEEehh--c--ccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCC
Confidence 688899999999987653 1 1222221111112 2588899998887 46444 576
No 485
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=54.95 E-value=2.1e+02 Score=27.86 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCC------CC------CC--C
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRP------SK------RH--M 320 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P------~~------~~--~ 320 (376)
.+.+...++++.+++....-+.+|.. -...++.+..+.+.+.++|.|++.+=+.. .. .| +
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~------~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~ 224 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLT------PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKT 224 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECC------CCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCC
Confidence 35667777777777642111344533 23347888888899999999887543211 00 00 0
Q ss_pred CCcc----cCChHHHHHHHHHHHHH--hhhhhccchhHhhhhhh
Q 017179 321 PVSE----YITPEAFERYRALGMEM--GFRYVASGPMVRSSYKA 358 (376)
Q Consensus 321 ~v~~----~v~pe~~~~l~~~a~~~--gf~~~~sgp~vrssy~a 358 (376)
.... .+.|-..+.+.++.+.. .+..+++| =|++.-.|
T Consensus 225 ~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G-GI~~~~da 267 (299)
T cd02940 225 TYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG-GIESWEDA 267 (299)
T ss_pred CcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC-CCCCHHHH
Confidence 0001 13455578888888777 56677777 44444333
No 486
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=54.69 E-value=35 Score=34.21 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHcC-ccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~aG-ld~ 235 (376)
.+.+|....++.+.+.|+++|.++++...... ..++.+.++.||+... +.|- ..+.+ +.+..+.+.+.| +|.
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~~-ipvi-~~G~i--~~~~a~~~l~~g~~D~ 310 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAFK-GPLI-AAGGY--DAESAEAALADGKADL 310 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cccchHHHHHHHHHcC-CCEE-EECCC--CHHHHHHHHHcCCCCE
Confidence 57788899999999999999999877432211 1245677777877652 3332 34555 366677777665 888
Q ss_pred cccc
Q 017179 236 FAHN 239 (376)
Q Consensus 236 i~h~ 239 (376)
+..+
T Consensus 311 V~~g 314 (338)
T cd02933 311 VAFG 314 (338)
T ss_pred EEeC
Confidence 7765
No 487
>PF07056 DUF1335: Protein of unknown function (DUF1335); InterPro: IPR009766 This family represents a conserved region approximately 130 residues long within a number of proteins of unknown function that seem to be specific to the white spot syndrome virus (WSSV).
Probab=54.50 E-value=19 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=25.1
Q ss_pred CceEEEeEEEecCCCHHHHHHHHHHHHH
Q 017179 274 GTLTKTSIMLGCGETPDQVVSTMEKVRA 301 (376)
Q Consensus 274 Gi~tkt~imvGlGET~ee~~e~L~~Lre 301 (376)
-+.++|++++|+|-|..++.++|+.+..
T Consensus 27 ~~IvttDfLiGlG~s~~~v~~~L~~me~ 54 (131)
T PF07056_consen 27 YMIVTTDFLIGLGFSPRNVTKKLKSMEQ 54 (131)
T ss_pred eEEEehhheeecCCChHHHHHHHHHHHH
Confidence 3889999999999999999999987763
No 488
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=54.49 E-value=2.1e+02 Score=28.58 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=68.7
Q ss_pred HHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE--ecCCCCC--ChHHHHHHHHcCcccccc
Q 017179 163 TNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA--LVPDFRG--NNGCVREVAKSGLNVFAH 238 (376)
Q Consensus 163 ~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~--l~pd~~g--~~e~l~~L~~aGld~i~h 238 (376)
.+.++...+.|+--. +.++ +-.+.+ .+ +.+..+.+++..|+..+-+ ..+.... ..+..+.+...++|.+..
T Consensus 73 ~~La~~a~~~g~~~~-~Gs~-~~~~~~--~~-~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i 147 (333)
T TIGR02151 73 RNLARAARELGIPMG-VGSQ-RAALKD--PE-TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAI 147 (333)
T ss_pred HHHHHHHHHcCCCeE-EcCc-hhhccC--hh-hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEE
Confidence 345666677776433 2222 111222 12 3344466666556554432 1111111 122223333334555555
Q ss_pred cccchHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEeec
Q 017179 239 NIETVEELQSAVRD-HRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTFGQ 311 (376)
Q Consensus 239 ~lEtv~~l~~~vr~-r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~~q 311 (376)
++....++ +.+ ...+++.+++.++.+++..+--+.+| ++|+|-+ .+..+.|.+.|+|.|.++.
T Consensus 148 ~ln~~q~~---~~p~g~~~f~~~le~i~~i~~~~~vPVivK---~~g~g~~----~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 148 HLNVLQEL---VQPEGDRNFKGWLEKIAEICSQLSVPVIVK---EVGFGIS----KEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred cCcccccc---cCCCCCcCHHHHHHHHHHHHHhcCCCEEEE---ecCCCCC----HHHHHHHHHcCCCEEEECC
Confidence 54332222 221 22368889999999998632113445 4577754 4667788899999999853
No 489
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.31 E-value=61 Score=28.29 Aligned_cols=71 Identities=6% Similarity=0.077 Sum_probs=32.1
Q ss_pred hHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecC--CCHHHHHHHHHHH
Q 017179 222 NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG--ETPDQVVSTMEKV 299 (376)
Q Consensus 222 ~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG--ET~ee~~e~L~~L 299 (376)
++.++..++.++|.+..+ .+. +.+....-++++.+++. |+.-. -+|+|=+ -.++|+.+.-..|
T Consensus 42 e~~v~aa~~~~adiVglS---------~l~--~~~~~~~~~~~~~l~~~---gl~~~-~vivGG~~vi~~~d~~~~~~~l 106 (134)
T TIGR01501 42 EEFIKAAIETKADAILVS---------SLY--GHGEIDCKGLRQKCDEA---GLEGI-LLYVGGNLVVGKQDFPDVEKRF 106 (134)
T ss_pred HHHHHHHHHcCCCEEEEe---------ccc--ccCHHHHHHHHHHHHHC---CCCCC-EEEecCCcCcChhhhHHHHHHH
Confidence 445555555555555441 111 34445555555555552 33111 1444432 2344444444555
Q ss_pred HHcCCcEE
Q 017179 300 RAAGVDVM 307 (376)
Q Consensus 300 rel~vd~v 307 (376)
+++|++.+
T Consensus 107 ~~~Gv~~v 114 (134)
T TIGR01501 107 KEMGFDRV 114 (134)
T ss_pred HHcCCCEE
Confidence 56665544
No 490
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.22 E-value=98 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.6
Q ss_pred CCCCchhHHHHHHHHHHCCCcEEEEEeee
Q 017179 155 PPPDPDEPTNVAEAIASWGLDYVVITSVD 183 (376)
Q Consensus 155 ~~l~~eEi~~~a~al~~~G~~eIvLTsg~ 183 (376)
..+|.+...+.++.+.+.|++-+++-|..
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~ 45 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTT 45 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 35899999999999999999999876553
No 491
>TIGR03586 PseI pseudaminic acid synthase.
Probab=53.88 E-value=1.5e+02 Score=29.79 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeee
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVD 183 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~ 183 (376)
|.+...+.++++++.|.+-|-+|.-.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~ 40 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYT 40 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeecc
Confidence 56777888999999999988888753
No 492
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=53.81 E-value=36 Score=36.09 Aligned_cols=100 Identities=12% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCC---C-C--CcccHHHHHHHHHHHHhhCCCc-EEEE--e---cCC-----CC
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRD---D-L--ADQGSGHFAQTVRKLKELKPNM-LIEA--L---VPD-----FR 219 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~---d-l--~d~g~~~~~elvr~Ik~~~p~i-~Ie~--l---~pd-----~~ 219 (376)
++.+.|....+.+.+.|++-|+-.=||.+ | . .++|+.+-.++|+.|+.++.+. -|.+ . .|+ +.
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~~ 168 (590)
T KOG0564|consen 89 MPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDYL 168 (590)
T ss_pred ccHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccchh
Confidence 56778888889999999999987666622 1 1 2357999999999999988542 2222 1 111 33
Q ss_pred CChHHHHHHHHcCcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 017179 220 GNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 269 (376)
Q Consensus 220 g~~e~l~~L~~aGld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~ 269 (376)
.+...|++=.++|+|.+-- . |- +..+.+++....+++
T Consensus 169 ~Dl~yLk~KvdaGaDFIiT------Q----lF---Yd~e~flkfv~~cR~ 205 (590)
T KOG0564|consen 169 ADLPYLKEKVDAGADFIIT------Q----LF---YDVETFLKFVKDCRA 205 (590)
T ss_pred hhhHHHHHhhcccchhhhh------h----hh---cCHHHHHHHHHHHHH
Confidence 3445555556777775411 1 21 455666666666666
No 493
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=53.44 E-value=1.3e+02 Score=30.93 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEeEEEecC-CCHHHHHHHHHHHHHcCCcEEEeecCCCC
Q 017179 255 ANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCG-ETPDQVVSTMEKVRAAGVDVMTFGQYMRP 315 (376)
Q Consensus 255 ~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlG-ET~ee~~e~L~~Lrel~vd~v~~~qY~~P 315 (376)
...+.|++.+..+++..|+ .++=.+|| | .+.+|..+.++.+.+.++|.+-+ +++-|
T Consensus 95 ~g~~~~l~~i~~~k~~~~~-~pvIaSi~---~~~s~~~~~~~a~~~e~~GaD~iEL-NiSCP 151 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPD-RILIASIM---EEYNKDAWEEIIERVEETGVDALEI-NFSCP 151 (385)
T ss_pred cCHHHHHHHHHHHHhhCCC-CcEEEEcc---CCCCHHHHHHHHHHHHhcCCCEEEE-ECCCC
Confidence 4688899888888775554 44444443 4 68999999999999999999888 66656
No 494
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=53.26 E-value=50 Score=31.72 Aligned_cols=135 Identities=13% Similarity=0.228 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cccc------HHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG------SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g------~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.+|+++.|..++ -..|+|.=-.|..+ .++| .+.+.++++.+++. ++.|.+++- - +.+.++.-++.
T Consensus 72 ~~emi~ia~~vk---P~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~--gI~VSLFiD-P--~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEIK---PEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAA--GIEVSLFID-A--DKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHC--CCEEEEEeC-C--CHHHHHHHHHh
Confidence 467777776543 46777653333333 2333 35677888888764 688887652 2 57899999999
Q ss_pred CcccccccccchHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcC-CcEEEee
Q 017179 232 GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAG-VDVMTFG 310 (376)
Q Consensus 232 Gld~i~h~lEtv~~l~~~vr~r~~t~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~-vd~v~~~ 310 (376)
|+|.+...-...-.-+..-. ....++...+.-+.|++ .|+.+. .|+|=+-+.+... ++-.+ +.-++||
T Consensus 144 GAd~VELhTG~YA~a~~~~~-~~~el~~i~~aa~~A~~---lGL~Vn----AGHgLny~Nv~~i---~~~~~~i~EvnIG 212 (237)
T TIGR00559 144 GADRIEIHTGPYANAYNKKE-MAEELQRIVKASVHAHS---LGLKVN----AGHGLNYHNVKYF---AEILPYLDELNIG 212 (237)
T ss_pred CcCEEEEechhhhcCCCchh-HHHHHHHHHHHHHHHHH---cCCEEe----cCCCCCHHhHHHH---HhCCCCceEEecC
Confidence 99987554221111110000 01123444444555555 366554 4778887766432 23334 6777777
Q ss_pred cC
Q 017179 311 QY 312 (376)
Q Consensus 311 qY 312 (376)
..
T Consensus 213 Hs 214 (237)
T TIGR00559 213 HA 214 (237)
T ss_pred HH
Confidence 44
No 495
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=53.22 E-value=67 Score=30.90 Aligned_cols=135 Identities=13% Similarity=0.246 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHCCCcEEEEEeeeCCCC-Cccc------HHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 159 PDEPTNVAEAIASWGLDYVVITSVDRDDL-ADQG------SGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 159 ~eEi~~~a~al~~~G~~eIvLTsg~r~dl-~d~g------~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
.+|+++.|..++- +.++|.=-.+..+ .++| .+.+.++++.++.. ++++.+++- - +.+.++.-++.
T Consensus 73 t~e~~~ia~~~kP---~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~--gIrvSLFiD-P--~~~qi~~A~~~ 144 (239)
T PF03740_consen 73 TEEMVDIALKVKP---DQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDA--GIRVSLFID-P--DPEQIEAAKEL 144 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHT--T-EEEEEE--S---HHHHHHHHHT
T ss_pred CHHHHHHHHhCCc---CEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhC--CCEEEEEeC-C--CHHHHHHHHHc
Confidence 4678887776654 6777754333222 1222 56788899999884 789987652 1 57889999999
Q ss_pred CcccccccccchHHHHHhhcCCCCC--HHHHHHHHHHHHHhCCCCceEEEeEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Q 017179 232 GLNVFAHNIETVEELQSAVRDHRAN--FKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMEKVRAAGVDVMTF 309 (376)
Q Consensus 232 Gld~i~h~lEtv~~l~~~vr~r~~t--~e~~L~vl~~ak~~~p~Gi~tkt~imvGlGET~ee~~e~L~~Lrel~vd~v~~ 309 (376)
|+|.+...-...-..+..-. .... +++..+.-+.|++ .|+.+.+ |+|=+-+.+... ++--++.-++|
T Consensus 145 Gad~VELhTG~yA~a~~~~~-~~~~ell~~l~~aa~~a~~---lGL~VnA----GHgL~y~N~~~i---~~i~~i~EvnI 213 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAE-EAEEELLERLRDAARYAHE---LGLGVNA----GHGLNYDNVRPI---AAIPPIEEVNI 213 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHH-HHHHHHHHHHHHHHHHHHH---TT-EEEE----ETT--TTTHHHH---HTSTTEEEEEE
T ss_pred CCCEEEEehhHhhhhcCCHH-HHHHHHHHHHHHHHHHHHH---cCCEEec----CCCCCHHHHHHH---HhCCCceEEec
Confidence 99987553111111111000 0001 3455566666666 4666654 566554433222 22334666777
Q ss_pred ecC
Q 017179 310 GQY 312 (376)
Q Consensus 310 ~qY 312 (376)
|.+
T Consensus 214 GHa 216 (239)
T PF03740_consen 214 GHA 216 (239)
T ss_dssp -HH
T ss_pred CHH
Confidence 643
No 496
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.14 E-value=55 Score=31.22 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCChHHHHHHHHc
Q 017179 161 EPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS 231 (376)
Q Consensus 161 Ei~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~~e~l~~L~~a 231 (376)
++.+.++.+.+.|+.++++|+.+++.... |.+ .++++.+.+.. ++.|-+.-+ .++.+.+..+.+.
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI~rdGt~~-G~d--~el~~~l~~~~-~~pviasGG--v~s~~Dl~~l~~~ 209 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQ-EHD--FSLTRKIAIEA-EVKVFAAGG--ISSENSLKTAQRV 209 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhcCC-CcC--HHHHHHHHHHC-CCCEEEECC--CCCHHHHHHHHhc
Confidence 45666777889999999999999875432 222 45677776653 344433322 2267778888775
No 497
>PRK08444 hypothetical protein; Provisional
Probab=52.97 E-value=76 Score=32.09 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEe----E--EE-ecCCCHHHHHHHHHHHHHcCCcEEEee--cCCCCCCCCCCCcc
Q 017179 254 RANFKQSLDVLMMAKDYVPAGTLTKTS----I--ML-GCGETPDQVVSTMEKVRAAGVDVMTFG--QYMRPSKRHMPVSE 324 (376)
Q Consensus 254 ~~t~e~~L~vl~~ak~~~p~Gi~tkt~----i--mv-GlGET~ee~~e~L~~Lrel~vd~v~~~--qY~~P~~~~~~v~~ 324 (376)
...++.+.++++.+|+.+|. +.+++- | +- -+|-+. .+.+..|++.|+|.++-+ .++.|..+..--..
T Consensus 109 ~~~~e~y~e~ir~Ik~~~p~-i~i~a~s~~Ei~~~a~~~g~~~---~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~ 184 (353)
T PRK08444 109 NYGYEWYLEIFKKIKEAYPN-LHVKAMTAAEVDFLSRKFGKSY---EEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKG 184 (353)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ceEeeCCHHHHHHHHHHcCCCH---HHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCC
Confidence 44688899999999987775 555430 0 00 012232 456677788998877652 12222100100112
Q ss_pred cCChHHHHHHHHHHHHHhhhhhcc
Q 017179 325 YITPEAFERYRALGMEMGFRYVAS 348 (376)
Q Consensus 325 ~v~pe~~~~l~~~a~~~gf~~~~s 348 (376)
....++...+.+.|.++|+..++.
T Consensus 185 k~~~~~~~~i~~~a~~~Gi~~~sg 208 (353)
T PRK08444 185 KVSSERWLEIHKYWHKKGKMSNAT 208 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCccce
Confidence 233456666667788888877643
No 498
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.94 E-value=79 Score=30.12 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEE-ecCCCC-CChHHHHHHHHcCcc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEA-LVPDFR-GNNGCVREVAKSGLN 234 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~-l~pd~~-g~~e~l~~L~~aGld 234 (376)
.+++.+.+.++++.+.|++.|.|-=-..-- -...+.++++.+++..| +.+++ +.-++. +....+.. .++|++
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~----~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laA-i~aG~~ 209 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGIL----DPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAA-VRAGAT 209 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----CHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHH-HHhCCC
Confidence 578999999999999999988773110111 14568889999998877 66654 232331 11223333 478888
Q ss_pred cccc
Q 017179 235 VFAH 238 (376)
Q Consensus 235 ~i~h 238 (376)
.+.-
T Consensus 210 ~vd~ 213 (259)
T cd07939 210 HVSV 213 (259)
T ss_pred EEEE
Confidence 7644
No 499
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.79 E-value=2e+02 Score=27.04 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=50.6
Q ss_pred CchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCC---cEEEEecCCCCCChHHHHHHHHcCcc
Q 017179 158 DPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPN---MLIEALVPDFRGNNGCVREVAKSGLN 234 (376)
Q Consensus 158 ~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~---i~Ie~l~pd~~g~~e~l~~L~~aGld 234 (376)
|..-+..++.++...|.+.++|---|..-.|..-+. .-+|+.|++..+. ..++...-. .++.+..+.++|++
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G--~pvV~slR~~~~~~~ffD~HmMV~~---Peq~V~~~a~agas 89 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFG--PPVVESLRKHTGADPFFDVHMMVEN---PEQWVDQMAKAGAS 89 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccc--hHHHHHHHhccCCCcceeEEEeecC---HHHHHHHHHhcCcc
Confidence 455667778888899999999866553222221011 1256777765422 233333221 25568999999999
Q ss_pred cccccccch
Q 017179 235 VFAHNIETV 243 (376)
Q Consensus 235 ~i~h~lEtv 243 (376)
.|....|..
T Consensus 90 ~~tfH~E~~ 98 (224)
T KOG3111|consen 90 LFTFHYEAT 98 (224)
T ss_pred eEEEEEeec
Confidence 999887754
No 500
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=52.72 E-value=69 Score=35.45 Aligned_cols=177 Identities=16% Similarity=0.232 Sum_probs=95.1
Q ss_pred CCchhHHHHHHHHHHCCCcEEEEEeeeCCCCCcccHHHHHHHHHHHHhhCCCcEEEEecCCCCCC-hHHHHHHHHcCccc
Q 017179 157 PDPDEPTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNV 235 (376)
Q Consensus 157 l~~eEi~~~a~al~~~G~~eIvLTsg~r~dl~d~g~~~~~elvr~Ik~~~p~i~Ie~l~pd~~g~-~e~l~~L~~aGld~ 235 (376)
.+.+=-++.+++++++|..-..|---..---|. +. -=+|-+|+.++|++.|++-+-|-.|. ...+..-..+|+|+
T Consensus 715 Y~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~--aa--~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADV 790 (1176)
T KOG0369|consen 715 YNLDYYLNLADKLVKAGTHILGIKDMAGVLKPE--AA--KLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADV 790 (1176)
T ss_pred ccHHHHHHHHHHHHhccCeEEeehhhhcccCHH--HH--HHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCce
Confidence 444555677777777776544442100000011 11 22567788899999998877666442 33445566789998
Q ss_pred ccccccchH---------HHHHhhcC----CC------CCHHHHHHHHHHHHHh------------------CCCCceEE
Q 017179 236 FAHNIETVE---------ELQSAVRD----HR------ANFKQSLDVLMMAKDY------------------VPAGTLTK 278 (376)
Q Consensus 236 i~h~lEtv~---------~l~~~vr~----r~------~t~e~~L~vl~~ak~~------------------~p~Gi~tk 278 (376)
+...+++.. .+...+.+ -+ ..|+.||+-.+.+-.- .|.|--|+
T Consensus 791 VDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYapFe~tttmksgn~dVY~hEIPGGQyTN 870 (1176)
T KOG0369|consen 791 VDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYAPFECTTTMKSGNSDVYQHEIPGGQYTN 870 (1176)
T ss_pred eeeecccccccccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhchhhhcccccCCCcchhhccCCCcceee
Confidence 876554322 22222221 01 1244555544433221 23332222
Q ss_pred Ee---EEEecCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCC------CCCcccCChHHHHHHHHHHHHHhhh
Q 017179 279 TS---IMLGCGETPDQVVSTMEKVRAAGVDVMTFGQYMRPSKRH------MPVSEYITPEAFERYRALGMEMGFR 344 (376)
Q Consensus 279 t~---imvGlGET~ee~~e~L~~Lrel~vd~v~~~qY~~P~~~~------~~v~~~v~pe~~~~l~~~a~~~gf~ 344 (376)
-. .-+|||+.++|+-........+=-|+|.+. |+.+- .-|.+..+. +.+...|.++.|.
T Consensus 871 L~FQA~slGLG~q~~evKkaYrEAN~lLGDiiKVT----PsSKvVGDLAQFMVqN~Lt~---~~~~~rA~~LsFP 938 (1176)
T KOG0369|consen 871 LQFQAFSLGLGEQFAEVKKAYREANLLLGDIIKVT----PSSKVVGDLAQFMVQNKLTR---DDVERRAEELSFP 938 (1176)
T ss_pred eeeehhhccchhhHHHHHHHHHHHHHHhhCeeeec----cchhhHHHHHHHHHhcCCCH---HHHHHHhhhcCCc
Confidence 21 347999999999988887777666888875 64221 113333333 3445566666663
Done!