BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017180
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A V E LVI G A L
Sbjct: 60 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----VGLEEVVLVIHDWGSA--LGF 113
Query: 185 RAAKKNLVKPTAIAAV-----APTW 204
AK+N + IA + PTW
Sbjct: 114 HWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 113 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 172
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 173 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 204
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A + E LVI G A L
Sbjct: 60 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSA--LGF 113
Query: 185 RAAKKNLVKPTAIAAV-----APTW 204
AK+N + IA + PTW
Sbjct: 114 HWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 113 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 172
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 173 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 204
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 113 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 172
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 173 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 204
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 138
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 113 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 172
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 46 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 100
Query: 173 IFGGGHAATLTVRAAKKNLVKPTAIAAVA-----PTW 204
I G A L AK+N + IA + PTW
Sbjct: 101 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPFPTW 135
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 113 QDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLV 172
++I+ V + R D G+G SD+P +DY D +++ I A + E LV
Sbjct: 49 RNIIPHVAPSH-RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLV 103
Query: 173 IFGGGHAATLTVRAAKKNLVKPTAIAAV-----APTW 204
I G A L AK+N + IA + PTW
Sbjct: 104 IHDWGSA--LGFHWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A + E LVI G A L
Sbjct: 60 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSA--LGF 113
Query: 185 RAAKKNLVKPTAIAAVA-----PTW 204
AK+N + IA + PTW
Sbjct: 114 HWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A + E LVI G A L
Sbjct: 60 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSA--LGF 113
Query: 185 RAAKKNLVKPTAIAAVA-----PTW 204
AK+N + IA + PTW
Sbjct: 114 HWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A + E LVI G A L
Sbjct: 60 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSA--LGF 113
Query: 185 RAAKKNLVKPTAIAAV-----APTW 204
AK+N + IA + PTW
Sbjct: 114 HWAKRNPERVKGIACMEFIRPIPTW 138
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 125 RATIVDWPGLGYSDRPKMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTV 184
R D G+G SD+P +DY D +++ I A + E LVI G A L
Sbjct: 57 RCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIEA----LGLEEVVLVIHDWGSA--LGF 110
Query: 185 RAAKKNLVKPTAIAAV-----APTW 204
AK+N + IA + PTW
Sbjct: 111 HWAKRNPERVKGIACMEFIRPIPTW 135
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 305 LFADLEGKLPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEV 346
L ADL G P LVV+ E P R + E+ A K ++ V V
Sbjct: 233 LLADLGGLPPALVVTAEYDPLRDEGELYAYKXKASGSRAVAV 274
>pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
Length = 376
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 95 MIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYSDRPKMDYNADVMEK--- 151
+IP ++ ST+E+W+ + Q ++ + T + GL + K+ N + EK
Sbjct: 114 IIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTNMSRLGLDKKELQKLIKNPTIFEKAEI 173
Query: 152 --FVVDLINAPDSPVSSSESDLVIF 174
+ L N D+ SS+ L F
Sbjct: 174 KYILSHLANGEDASHSSNNKQLAAF 198
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 181 TLTVRAAKKNLVKPTAIAAVAPTWAGPLPIVFGRDSSMETRYGLLRGTLRAPGVGWMMYN 240
++T A +V+P IA + + G+D S T + L G G+ ++
Sbjct: 14 SITAPKADSTVVEPRKIALITG--------ITGQDGSYLTEFLL--------GKGYEVHG 57
Query: 241 MLVSNEKAIQSQYKSHVYSNPDNVTPGIVESRYA 274
L+ +Q +H+Y +P NV +++ YA
Sbjct: 58 -LIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 90
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 95 MIPTISDVSTVEEW---RLVAQDIVQRVGKVNWRATIVDW 131
++P I++VS + E R+V+ + Q G+V WR TI +W
Sbjct: 231 IVPLIANVSVIPESDPERIVSLLVQQVTGRVRWRETI-EW 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,272,533
Number of Sequences: 62578
Number of extensions: 415967
Number of successful extensions: 1165
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 26
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)