BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017180
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Mus musculus GN=Nsd1 PE=1 SV=1
Length = 2588
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 26/155 (16%)
Query: 21 IYRPFLSQNVHSLKPTSLKASSSTSVDYSTASVVEKQSTPSKTGNWQWKFKE--NSINIY 78
+ RPFL + K + + S + TA + P+ G+ +E NSIN+
Sbjct: 223 VERPFLPLAPQTEKQKNKQRSEVDGSNEKTALL----PAPTSLGDTNVTVEEQFNSINLS 278
Query: 79 YEKHERESPDPSKNILMIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYS- 137
++ SP P N+L IP S ST +E V Q I+ + W A++ GL
Sbjct: 279 FQDDPDSSPSPLGNMLEIPGTSSPSTSQELPFVPQKILSK-----WEASV----GLAEQY 329
Query: 138 DRPKMDYNADVMEKFVV----------DLINAPDS 162
D PK N + V D N PDS
Sbjct: 330 DVPKGSKNQKCVSSSVKLDSEEDMPFEDCTNDPDS 364
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 187 AKKNLVKPTAIAAVAPTWAGPLPI--VFGRDSSMETRYGLLRGTLRAPGVGWMMYNMLV- 243
A+ +L++ T + ++APTW LP+ V G + E ++ GTL M V
Sbjct: 41 ARLHLMR-TLLYSLAPTWKSHLPVCKVLGLEKGKEC---IIVGTL----FKHMKLKPCVL 92
Query: 244 ---SNEKAIQSQYKSHVYSNPDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPVNSRE 300
S E+++ K H + +PD+ I+E K G+ PA ++TG++ ++ +E
Sbjct: 93 DEYSKERSVTPLVKPHNFMHPDDNL--ILEDESGRVKLAGSALSPAIYVTGVVVALHGKE 150
>sp|P0CP26|NOP58_CRYNJ Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=NOP58 PE=3
SV=1
Length = 568
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 94 LMIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYS-DRPKMDYNADVMEKF 152
L IP +SD ST + +R + Q + +G V+ + GLG+S R K+ ++ D ++
Sbjct: 113 LSIPVLSDSSTQDLYRGIRQQLASLLGGVDQKDLNTMSLGLGHSLSRFKLKFSTDKVDTM 172
Query: 153 VVDLINAPD 161
V+ I D
Sbjct: 173 VIQAIALLD 181
>sp|P0CP27|NOP58_CRYNB Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=NOP58 PE=3 SV=1
Length = 565
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 94 LMIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPGLGYS-DRPKMDYNADVMEKF 152
L IP +SD ST + +R + Q + +G V+ + GLG+S R K+ ++ D ++
Sbjct: 113 LSIPVLSDSSTQDLYRGIRQQLASLLGGVDQKDLNTMSLGLGHSLSRFKLKFSTDKVDTM 172
Query: 153 VVDLINAPD 161
V+ I D
Sbjct: 173 VIQAIALLD 181
>sp|A6UUZ4|DTDA_META3 D-tyrosyl-tRNA(Tyr) deacylase OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=dtdA PE=3 SV=1
Length = 267
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 83 ERESPDPSKNILMIPTISDVSTVEEWRLVAQDIVQRVGKVNWRATIVDWPG----LGYSD 138
E D N +++ I+ + +E+++ + D+ ++ T +D P +G S+
Sbjct: 92 EVCCCDAILNTILLVNINKYNNLEKYKKLGFDV--SFEAIHHAPTDLDVPSVFVEIGSSE 149
Query: 139 RP-KMDYNADVMEKFVVDLINAPDSPVSSSESDLVIFGGGHAATLTVRAAKKNLVKPTAI 197
+ +D ++M ++D I++ +S ++ FGGGH A R K +L +
Sbjct: 150 KEWAIDEAGEIMANAIIDTISSIESKSYKKLDKVIAFGGGHYAP---RFTKLSLSNKCFV 206
Query: 198 AAVAPTWA 205
+ P +A
Sbjct: 207 GYIIPKYA 214
>sp|B3H003|RDGC_ACTP7 Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 261 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 312
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PTNVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 313 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQEEYPAMVAQ 362
L V GS +R++ + L+ G V + ALLP E +A+
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIAK 181
>sp|A3MYN3|RDGC_ACTP2 Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 261 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 312
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 313 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQE 354
L V GS +R++ + L+ G V + ALLP E
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSE 173
>sp|B0BS66|RDGC_ACTPJ Recombination-associated protein RdgC OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=rdgC PE=3
SV=1
Length = 302
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 261 PDNVTPGIVESRYALTKRKGARYVPAAFLTGLLDPV--------NSREEFLQLFADLEGK 312
P NV E R A+ + K AR + + D V S+ +F ++ DL+ +
Sbjct: 75 PANVIKKETEERIAVLEEKEARKLKKTEKQAIKDDVVAMLLPRAFSKHQFTAIWLDLDAQ 134
Query: 313 LPLLVVSTEGSPRRSKAEMEALKGAKGVTKFVEVPGALLPQEEYPAMVAQ 362
L V GS +R++ + L+ G V + ALLP E +A+
Sbjct: 135 L---VYVDAGSSKRAEDTLALLRKTLGSLPVVPISFALLPSEVMTNWIAK 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,610,233
Number of Sequences: 539616
Number of extensions: 5547697
Number of successful extensions: 13145
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 13142
Number of HSP's gapped (non-prelim): 16
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)