BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017181
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 169 ALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTG 228
AL IT GGNDF+ L A+ L + V+ L + GAR ++V
Sbjct: 148 ALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQ-----------ALQQAGARYIVVWL 196
Query: 229 TGPLGCVPAELALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKIGQTVFIAANTQQTH 288
LG PA G + + +N +L L + G V I N
Sbjct: 197 LPDLGLTPATFG-----GPLQPFASQLSGTFNAELTAQLS----QAGANV-IPLNIPLLL 246
Query: 289 MDFVSNPQAYGFTTAK--VACCGQGPNNGLGLCTALSNLCPNRQLYAFWDPFHPSEKANR 346
+ ++NP ++G + + C G + ++ P+ F D HP+ R
Sbjct: 247 KEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQR 306
Query: 347 LIVEQIFS 354
LI + +S
Sbjct: 307 LIADYTYS 314
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 126 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGG--- 177
+ND G R ++D F + + + V+GAQ +++V+ R ++L+ G
Sbjct: 23 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82
Query: 178 NDFVNNYYLVPYSARSRQFTLPNYVKYII----SEYRKLLMRLYELGARRVL 225
+DF+ LVP L + II SEYR R +L A+ +L
Sbjct: 83 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 126 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGG--- 177
+ND G R ++D F + + + V+GAQ +++V+ R ++L+ G
Sbjct: 44 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 103
Query: 178 NDFVNNYYLVPYSARSRQFTLPNYVKYII----SEYRKLLMRLYELGARRVL 225
+DF+ LVP L + II SEYR R +L A+ +L
Sbjct: 104 DDFIEK--LVP---------LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 144
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 224 VLVTGTGPLGCVPAELALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKI 274
LVT G PA + G N C ELQ A N QLE LQ + +++
Sbjct: 945 TLVTTNVTWGIQPAPMGSGGENAQCEKELQ-ALEKENAQLEWELQALEKEL 994
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 126 LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRAL----VLITVGGNDFV 181
+ND G R ++D F + + + V+GA ++V++ +++ V V
Sbjct: 21 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80
Query: 182 NNYY--LVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAEL 239
+N+ LVP SEYR + R +L + +L G+G G
Sbjct: 81 DNFIEKLVPLLDIGDIIIDGGN-----SEYRDTMRRCRDLKDKGILFVGSGVSG------ 129
Query: 240 ALRGSNGGCSAELQRATSLYNPQLEQMLQGINRKIG 275
G+ G S + P ++ + QGI K+G
Sbjct: 130 GEDGARYGPSL-MPGGNKEAWPHIKAIFQGIAAKVG 164
>pdb|3ULY|B Chain B, Crystal Structure Of Brox Bro1 Domain In Complex With
The C-Terminal Tails Of Chmp5
pdb|3UM1|B Chain B, Crystal Structure Of The Brox Bro1 Domain In Complex
With The C- Terminal Tail Of Chmp5
pdb|3UM1|E Chain E, Crystal Structure Of The Brox Bro1 Domain In Complex
With The C- Terminal Tail Of Chmp5
Length = 69
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 42 FGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDI 88
GD L+ +++YL A A A P G+ T G + F +P I
Sbjct: 20 LGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQI 66
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 183 NYYLVP-YSARSRQFTLPNYVKYIISEYRKLLMRLYE---LGARRVLVTGTGPLGCVPAE 238
Y +VP +A LP V I+ + + +Y + + VL+TG GP+G + A
Sbjct: 123 EYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLM-AA 181
Query: 239 LALRGSNGG-----------CSAELQRATSLYNPQLEQMLQGINRKIGQTVFI 280
+ +R S G + A L NP E +L+ + R G V +
Sbjct: 182 MVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEV 234
>pdb|4DJM|A Chain A, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|B Chain B, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|C Chain C, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|D Chain D, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|E Chain E, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|F Chain F, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|G Chain G, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|H Chain H, Crystal Structure Of The E. Coli Chaperone Drab
Length = 239
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 148 EYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLP 199
E+QR + + G +N L +TVGG + Y+ P+S SR++ LP
Sbjct: 164 EWQRAGNRLKGVNPTPFYIN--LSTLTVGGKEVKEREYIAPFS--SREYPLP 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,504,435
Number of Sequences: 62578
Number of extensions: 433599
Number of successful extensions: 876
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 18
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)