BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017182
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 19/339 (5%)
Query: 33 VKGLVDSGAAKVPRIFIHEQNKLEHKSD----SGNCQNFTIPIIDFQDIDRD-ASARCEI 87
V+ L SG +P+ +I + +LE +D +P ID ++I+ D R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 88 IDKVRKACEKWGFFQVVNRGIPLNILEEIINAVRKFHELDADVKKEFYSRDETRSMI--Y 145
I++++KA WG ++N GIP +++E + A +F L + +KE Y+ D+ I Y
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE-EKEKYANDQATGKIQGY 125
Query: 146 NTNFDFYQASAANWRDSLYCVMAXXXXXXXXXXAVCRS----VMMDYSKEVMKFGLTVFE 201
+ + W D + + S +Y+K + VF+
Sbjct: 126 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 185
Query: 202 LMSEALGLNSSHL-KDLGCAERLYLIG--HYYPACPEPELTLGLSKHTDSGFLTVVLQDQ 258
+S LGL L K++G E L L +YYP CP+PEL LG+ HTD LT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 259 MGGLQVLHEDDWVDVEPVSGSLILNVGDMTQLISNDKFKSVYHRVLAKNNGPRISVACFF 318
+ GLQ+ +E WV + V S+++++GD +++SN K+KS+ HR L RIS A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF- 304
Query: 319 RTHLEEGNDSRLYGPIEQLLSQISPPIYRETTAKDYVKY 357
E D + P+ +++S SP + T ++++
Sbjct: 305 ---CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 19/339 (5%)
Query: 33 VKGLVDSGAAKVPRIFIHEQNKLEHKSD----SGNCQNFTIPIIDFQDIDRD-ASARCEI 87
V+ L SG +P+ +I + +LE +D +P ID ++I+ D R
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 88 IDKVRKACEKWGFFQVVNRGIPLNILEEIINAVRKFHELDADVKKEFYSRDETRSMI--Y 145
I++++KA WG ++N GIP +++E + A +F L + +KE Y+ D+ I Y
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE-EKEKYANDQATGKIQGY 124
Query: 146 NTNFDFYQASAANWRDSLYCVMAXXXXXXXXXXAVCRS----VMMDYSKEVMKFGLTVFE 201
+ + W D + + S +Y+K + VF+
Sbjct: 125 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 184
Query: 202 LMSEALGLNSSHL-KDLGCAERLYLIG--HYYPACPEPELTLGLSKHTDSGFLTVVLQDQ 258
+S LGL L K++G E L L +YYP CP+PEL LG+ HTD LT +L +
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244
Query: 259 MGGLQVLHEDDWVDVEPVSGSLILNVGDMTQLISNDKFKSVYHRVLAKNNGPRISVACFF 318
+ GLQ+ +E WV + V S+++++GD +++SN K+KS+ HR L RIS A F
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF- 303
Query: 319 RTHLEEGNDSRLYGPIEQLLSQISPPIYRETTAKDYVKY 357
E D + P+ +++S SP + T ++++
Sbjct: 304 ---CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 19/339 (5%)
Query: 33 VKGLVDSGAAKVPRIFIHEQNKLEHKSD----SGNCQNFTIPIIDFQDIDRD-ASARCEI 87
V+ L SG +P+ +I + +LE +D +P ID ++I+ D R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 88 IDKVRKACEKWGFFQVVNRGIPLNILEEIINAVRKFHELDADVKKEFYSRDETRSMI--Y 145
I++++KA WG ++N GIP ++ E + A +F L + +KE Y+ D+ I Y
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVE-EKEKYANDQATGKIQGY 125
Query: 146 NTNFDFYQASAANWRDSLYCVMAXXXXXXXXXXAVCRS----VMMDYSKEVMKFGLTVFE 201
+ + W D + + S +Y+K + VF+
Sbjct: 126 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 185
Query: 202 LMSEALGLNSSHL-KDLGCAERLYLIG--HYYPACPEPELTLGLSKHTDSGFLTVVLQDQ 258
+S LGL L K++G E L L +YYP CP+PEL LG+ HTD LT +L +
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX 245
Query: 259 MGGLQVLHEDDWVDVEPVSGSLILNVGDMTQLISNDKFKSVYHRVLAKNNGPRISVACFF 318
+ GLQ+ +E WV + V S++ ++GD +++SN K+KS+ HR L RIS A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF- 304
Query: 319 RTHLEEGNDSRLYGPIEQLLSQISPPIYRETTAKDYVKY 357
E D + P+ + +S SP + T ++++
Sbjct: 305 ---CEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 34/316 (10%)
Query: 65 QNFTIPIIDFQDIDRDASARCEIIDKVRKACEKWGFFQVVNRGIPLNILEEIINAVRKFH 124
+NF PII ++ R + ++ ACE WGFF++VN GIP E+ + V K
Sbjct: 2 ENF--PIISLDKVN--GVERAATXEXIKDACENWGFFELVNHGIP----REVXDTVEK-- 51
Query: 125 ELDADVKKEFYSRDETR--SMIYNTNFDFYQASAAN--WRDSLYC--VMAXXXXXXXXXX 178
K + E R ++ + + QA + W + + +
Sbjct: 52 ----XTKGHYKKCXEQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLD 107
Query: 179 AVCRSVMMDYSKEVMKFGLTVFELMSEALGLNSSHLKDLGCAERLYLIG---HYYPACPE 235
R V D++K + K + +L+ E LGL +LK+ + G YP CP+
Sbjct: 108 EEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPK 167
Query: 236 PELTLGLSKHTDSGFLTVVLQD-QMGGLQVLHEDDWVDVEPVSGSLILNVGDMTQLISND 294
P+L GL HTD+G + ++ QD ++ GLQ+L + W+DV P S+++N+GD ++I+N
Sbjct: 168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 295 KFKSVYHRVLAKNNGPRISVACFFRTHLEEGNDSRLYGPIEQLLSQISPPIYRETTAKDY 354
K+KSV HRV+A+ +G R S+A F+ G+D+ +Y P L+ + + E + Y
Sbjct: 228 KYKSVXHRVIAQKDGARXSLASFYNP----GSDAVIY-PAPALVEKEA-----EENKQVY 277
Query: 355 VKYIYSKGLDGTSGLQ 370
K+++ +GL+
Sbjct: 278 PKFVFDDYXKLYAGLK 293
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 229 YYPACPEPELTLGLSKHTDSGFLTVVLQDQMGGLQVLHED-DWVDVEPVSGSLILNVGDM 287
+YP P+ + H D +T++L + GGL+VL D W+ + P G L++N+GD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 288 TQLISNDKFKSVYHRVL----AKNNGPRISVACFF 318
+ ++N+ S HRV+ + PR S F
Sbjct: 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFL 269
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 223 LYLIGHYYPACPEPEL-TLGLSKHTDSGFLTVVLQDQMGGLQVLHED-DWVDVEPVSGSL 280
L I HY P + E + + H D +TV+ GLQV +D W+DV G++
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNI 210
Query: 281 ILNVGDMTQLISNDKFKSVYHRVL----AKNNGPRISVACFFRTH 321
I+N+GD Q S+ F S HRV+ RIS+ F H
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPH 255
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 35/274 (12%)
Query: 62 GNCQNFTIPIIDFQDI-DRDASARCEIIDKVRKACEKWGFFQVVNRGIPLNILEEIINAV 120
G+ +P ID + D +A+ + ++ A GFF VN GI + L +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KT 58
Query: 121 RKFH-ELDADVKKEFYSRDETRSMIYNTNFDFYQASAANWRDSLYCVMAXXXXXXXXXXA 179
++FH + + K + R + +Y + +C +
Sbjct: 59 KEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 180 VCRSV--MMDYSKEVMKFGLTVF--ELMSEALGLNSSHLKDLGCA---ERLYLIGHY--- 229
+ + E G F + + GL+S+ LK A E + H+
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD 178
Query: 230 ----------YPAC-PEPELT---------LGLSKHTDSGFLTVVLQDQMGGLQVLHEDD 269
YP P PE L H D +TV+ Q + LQV
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 270 WVDVEPVSGSLILNVGDMTQLISNDKFKSVYHRV 303
+ D+E ++N G ++N+ +K+ HRV
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 35/274 (12%)
Query: 62 GNCQNFTIPIIDFQDI-DRDASARCEIIDKVRKACEKWGFFQVVNRGIPLNILEEIINAV 120
G+ +P ID + D +A+ + ++ A GFF VN GI + L +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ---KT 58
Query: 121 RKFH-ELDADVKKEFYSRDETRSMIYNTNFDFYQASAANWRDSLYCVMAXXXXXXXXXXA 179
++FH + + K + R + +Y + +C +
Sbjct: 59 KEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 180 VCRSV--MMDYSKEVMKFGLTVF--ELMSEALGLNSSHLKDLGCA---ERLYLIGHY--- 229
+ + E G F + + GL+S+ LK A E + H+
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD 178
Query: 230 ----------YPAC-PEPELT---------LGLSKHTDSGFLTVVLQDQMGGLQVLHEDD 269
YP P PE L H D +TV+ Q + LQV
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 270 WVDVEPVSGSLILNVGDMTQLISNDKFKSVYHRV 303
+ D+E ++N G ++N+ +K+ HRV
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
>pdb|2I69|A Chain A, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein
Length = 403
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 196 GLTVFELMSEALGLNSSHLKDLGCAERLYLIGHYYPACPEPELTLGLSKHTDSGFLTVVL 255
G E S + L S HLK E+L L G Y C + LG D+G TVVL
Sbjct: 268 GAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTP--ADTGHGTVVL 325
Query: 256 QDQMGGLQVLHEDDWVDVEPVSGSLILNVGDMT---QLISNDKFKSV 299
+ LQ D V P+S LN D+T +L++ + F SV
Sbjct: 326 E-----LQYTGTDGPCKV-PISSVASLN--DLTPVGRLVTVNPFVSV 364
>pdb|3IYW|A Chain A, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|B Chain B, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|C Chain C, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
Length = 403
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 196 GLTVFELMSEALGLNSSHLKDLGCAERLYLIGHYYPACPEPELTLGLSKHTDSGFLTVVL 255
G E S + L S HLK E+L L G Y C + LG D+G TVVL
Sbjct: 268 GAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTP--ADTGHGTVVL 325
Query: 256 QDQMGGLQVLHEDDWVDVEPVSGSLILNVGDMT---QLISNDKFKSV 299
+ LQ D V P+S LN D+T +L++ + F SV
Sbjct: 326 E-----LQYTGTDGPCKV-PISSVASLN--DLTPVGRLVTVNPFVSV 364
>pdb|3I50|E Chain E, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein In Complex With The E53 Antibody Fab
Length = 402
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 196 GLTVFELMSEALGLNSSHLKDLGCAERLYLIGHYYPACPEPELTLGLSKHTDSGFLTVVL 255
G E S + L S HLK E+L L G Y C + LG D+G TVVL
Sbjct: 268 GAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTP--ADTGHGTVVL 325
Query: 256 QDQMGGLQVLHEDDWVDVEPVSGSLILNVGDMT---QLISNDKFKSV 299
+ LQ D V P+S LN D+T +L++ + F SV
Sbjct: 326 E-----LQYTGTDGPCKV-PISSVASLN--DLTPVGRLVTVNPFVSV 364
>pdb|2OF6|A Chain A, Structure Of Immature West Nile Virus
pdb|2OF6|B Chain B, Structure Of Immature West Nile Virus
pdb|2OF6|C Chain C, Structure Of Immature West Nile Virus
pdb|3IXX|A Chain A, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|B Chain B, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|C Chain C, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3J0B|A Chain A, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|B Chain B, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|C Chain C, Cryo-Em Reconstruction Of West Nile Virus
Length = 400
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 196 GLTVFELMSEALGLNSSHLKDLGCAERLYLIGHYYPACPEPELTLGLSKHTDSGFLTVVL 255
G E S + L S HLK E+L L G Y C + LG D+G TVVL
Sbjct: 268 GAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTP--ADTGHGTVVL 325
Query: 256 QDQMGGLQVLHEDDWVDVEPVSGSLILNVGDMT---QLISNDKFKSV 299
+ LQ D V P+S LN D+T +L++ + F SV
Sbjct: 326 E-----LQYTGTDGPCKV-PISSVASLN--DLTPVGRLVTVNPFVSV 364
>pdb|2HG0|A Chain A, Structure Of The West Nile Virus Envelope Glycoprotein
Length = 408
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 196 GLTVFELMSEALGLNSSHLKDLGCAERLYLIGHYYPACPEPELTLGLSKHTDSGFLTVVL 255
G E S + L S HLK E+L L G Y C + LG D+G TVVL
Sbjct: 268 GAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTP--ADTGHGTVVL 325
Query: 256 QDQMGGLQVLHEDDWVDVEPVSGSLILNVGDMT---QLISNDKFKSV 299
+ LQ D V P+S LN D+T +L++ + F SV
Sbjct: 326 E-----LQYTGTDGPCKV-PISSVASLN--DLTPVGRLVTVNPFVSV 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,931,396
Number of Sequences: 62578
Number of extensions: 449044
Number of successful extensions: 1015
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 17
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)