BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017183
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/363 (85%), Positives = 336/363 (92%), Gaps = 3/363 (0%)
Query: 14 LLFQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 73
++ +YWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AIA AEIARVDASCSTFI
Sbjct: 77 IMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFI 136
Query: 74 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG 133
LVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP GSDAS L TTATKVEGG
Sbjct: 137 LVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGG 196
Query: 134 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 193
W + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL TKI NKIGLR+VQNG
Sbjct: 197 WKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNG 256
Query: 194 DILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 253
DILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMG+YDMCHRYLKERKQF
Sbjct: 257 DILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQF 316
Query: 254 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETV 313
GAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG ASLGK+WI+++ARET
Sbjct: 317 GAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETA 376
Query: 314 ALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKPVALATR 373
+LGRELLGGNGIL+DFLVAKAFCD+EPIYTYEGTYDINTLVTGREVTGIASFKP ATR
Sbjct: 377 SLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATR 433
Query: 374 SRL 376
SRL
Sbjct: 434 SRL 436
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/363 (85%), Positives = 336/363 (92%), Gaps = 3/363 (0%)
Query: 14 LLFQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 73
++ +YWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AIA AEIARVDASCSTFI
Sbjct: 77 IMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFI 136
Query: 74 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG 133
LVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP GSDAS L TTATKVEGG
Sbjct: 137 LVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGG 196
Query: 134 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 193
W + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL TKI NKIGLR+VQNG
Sbjct: 197 WKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNG 256
Query: 194 DILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 253
DILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMG+YDMCHRYLKERKQF
Sbjct: 257 DILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQF 316
Query: 254 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETV 313
GAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG ASLGK+WI+++ARET
Sbjct: 317 GAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETA 376
Query: 314 ALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKPVALATR 373
+LGRELLGGNGIL+DFLVAKAFCD+EPIYTYEGTYDINTLVTGREVTGIASFKP ATR
Sbjct: 377 SLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATR 433
Query: 374 SRL 376
SRL
Sbjct: 434 SRL 436
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 3/341 (0%)
Query: 28 VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 86
+ ++G + + G TI + YG PG + E+ RVD+ + + V SSL M+ I
Sbjct: 58 IFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFE 117
Query: 87 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 146
GS+ QK+KYLP LA I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS
Sbjct: 118 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNS 177
Query: 147 TFADVLVIFAR--NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD 204
ADV V++A+ ++I G++++K GL+ I K+GLR G+I+L + FVP+
Sbjct: 178 PIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPE 237
Query: 205 EDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 264
E+ LP V + L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q
Sbjct: 238 ENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 297
Query: 265 QKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNG 324
+KL M I + RL ++ ++G S+ K +A + L R++LGGNG
Sbjct: 298 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 357
Query: 325 ILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
I +F VA+ ++E + TYEGT+DI+ L+ GR TGI +F
Sbjct: 358 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 398
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 3/341 (0%)
Query: 28 VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 86
+ ++G + + G TI + YG PG + E+ RVD+ + + V SSL M+ I
Sbjct: 54 IFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFE 113
Query: 87 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 146
GS+ QK+KYLP LA I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS
Sbjct: 114 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNS 173
Query: 147 TFADVLVIFAR--NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD 204
ADV V++A+ ++I G++++K GL+ I K+GLR G+I+L + FVP+
Sbjct: 174 PIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPE 233
Query: 205 EDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 264
E+ LP V + L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q
Sbjct: 234 ENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 293
Query: 265 QKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNG 324
+KL M I + RL ++ ++G S+ K +A + L R++LGGNG
Sbjct: 294 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 353
Query: 325 ILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
I +F VA+ ++E + TYEGT+DI+ L+ GR TGI +F
Sbjct: 354 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 394
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 3/341 (0%)
Query: 28 VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 86
+ ++G + + G TI + YG PG + E+ RVD+ + + V SSL M+ I
Sbjct: 55 IFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFE 114
Query: 87 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 146
GS+ QK+KYLP LA I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS
Sbjct: 115 FGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNS 174
Query: 147 TFADVLVIFAR--NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPD 204
ADV V++A+ ++I G++++K GL+ I K+GLR G+I+L + FVP+
Sbjct: 175 PIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPE 234
Query: 205 EDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 264
E+ LP V + L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q
Sbjct: 235 ENILPHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 294
Query: 265 QKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNG 324
+KL M I + RL ++ ++G S+ K +A + L R++LGGNG
Sbjct: 295 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 354
Query: 325 ILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
I +F VA+ ++E + TYEGT+DI+ L+ GR TGI +F
Sbjct: 355 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAF 395
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 187/344 (54%), Gaps = 3/344 (0%)
Query: 24 FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 83
F +I ++G L V G TIKGYGC G S + E+ RVD+ + + V SSL M
Sbjct: 48 FHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHP 107
Query: 84 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKR 141
I GSEEQ+QKYLP LA+ + C+ LTEP GSD S++ T A + L G K
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT 167
Query: 142 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVF 201
WI NS AD+ V++AR I G+L++K GL+ +I+ K LR G I++ V
Sbjct: 168 WITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVE 226
Query: 202 VPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQ 261
VP+E+ LPG +S L +R +AW +G S +Y +R QFG PLA Q
Sbjct: 227 VPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 286
Query: 262 INQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLG 321
+ Q+KL ML I + +L +L ++ P SL K +A + R++LG
Sbjct: 287 LIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLG 346
Query: 322 GNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
GNGI ++ V + ++E + TYEGT+DI+ L+ GR +TGI +F
Sbjct: 347 GNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 390
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 187/344 (54%), Gaps = 3/344 (0%)
Query: 24 FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 83
F +I ++G L V G TIKGYGC G S + E+ RVD+ + + V SSL M
Sbjct: 46 FHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHP 105
Query: 84 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKR 141
I GSEEQ+QKYLP LA+ + C+ LTEP GSD S++ T A + L G K
Sbjct: 106 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT 165
Query: 142 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVF 201
WI NS AD+ V++AR I G+L++K GL+ +I+ K LR G I++ V
Sbjct: 166 WITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVE 224
Query: 202 VPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQ 261
VP+E+ LPG +S L +R +AW +G S +Y +R QFG PLA Q
Sbjct: 225 VPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 284
Query: 262 INQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLG 321
+ Q+KL ML I + +L +L ++ P SL K +A + R++LG
Sbjct: 285 LIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLG 344
Query: 322 GNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
GNGI ++ V + ++E + TYEGT+DI+ L+ GR +TGI +F
Sbjct: 345 GNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 187/344 (54%), Gaps = 3/344 (0%)
Query: 24 FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 83
F +I ++G L V G TIKGYGC G S + E+ RVD+ + + V SSL M
Sbjct: 48 FHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHP 107
Query: 84 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA--TKVEGGWILEGQKR 141
I GSEEQ+QKYLP LA+ + C+ LTEP GSD S++ T A + L G K
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT 167
Query: 142 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVF 201
WI NS AD+ V++AR I G+L++K GL+ +I+ K LR G I++ V
Sbjct: 168 WITNSPMADLFVVWAR-CEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVE 226
Query: 202 VPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQ 261
VP+E+ LPG +S L +R +AW +G S +Y +R QFG PLA Q
Sbjct: 227 VPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 286
Query: 262 INQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLG 321
+ Q+KL ML I + +L +L ++ P SL K +A + R++LG
Sbjct: 287 LIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLG 346
Query: 322 GNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
GNGI ++ V + ++E + TY+GT+DI+ L+ GR +TGI +F
Sbjct: 347 GNGISDEYHVIRHAMNLEAVNTYDGTHDIHALILGRAITGIQAF 390
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 195/350 (55%), Gaps = 3/350 (0%)
Query: 18 YWEKAEFPFHVIPKLGALRVAGGTIKG-YGCPGHSVTGAAIAIAEIARVDASCSTFILVH 76
+WE+ FP H+IP+ L G T+ YG G S + E+ RVD+ +F+ V
Sbjct: 37 WWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQ 96
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WI 135
SSL M I GSEEQK+++LP LA+ + C+ LTEP GSD T + EG W+
Sbjct: 97 SSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWV 156
Query: 136 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI 195
L G K WI N A + VI+A++ ++ G+LV D PG +++ K+ LR ++
Sbjct: 157 LNGTKMWITNGNLAHLAVIWAKDEG-GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSEL 215
Query: 196 LLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA 255
+L++V VP+ RLP + L +R +AW +G VY+ + K R FG
Sbjct: 216 VLEEVRVPESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGE 275
Query: 256 PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVAL 315
PLA Q+ Q KL +ML +L+ WRL +L ++G +TP SL K +A + +
Sbjct: 276 PLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARM 335
Query: 316 GRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365
R++LGG+GI ++ + ++E +YTYEGT+D++TLV GRE+TG+ +F
Sbjct: 336 ARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNAF 385
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 185/350 (52%), Gaps = 3/350 (0%)
Query: 18 YWEKAEFPFHVIP-KLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 76
++E E P + +LG L + G +KGYGC G S +A E+ D+ + + V
Sbjct: 56 WYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQ 115
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 136
SLAM I GS+EQK ++LP +A + I C+ LTEP +GSD + + T AT+ WIL
Sbjct: 116 GSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWIL 175
Query: 137 EGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDIL 196
G K WI N + ADV V++AR T I G++V D PG T I++K+ LR +++
Sbjct: 176 TGTKMWITNGSVADVAVVWAR--TDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELV 233
Query: 197 LKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP 256
L V +PD RLPG S + L +R + + +G + + Y R+QF P
Sbjct: 234 LDGVRLPDSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRP 293
Query: 257 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALG 316
+ FQ+ QQKL M L+ L + + G + P SLGK A E
Sbjct: 294 IGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTA 353
Query: 317 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 366
R +LG +GI ++ V + ++E + TYEGT +++TL+ G+ +TG+ +F+
Sbjct: 354 RTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAFR 403
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 184/352 (52%), Gaps = 8/352 (2%)
Query: 18 YWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 77
++E A P + + G L V G ++GYGC G + +A E+ D+ +F+ V
Sbjct: 52 WFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQG 111
Query: 78 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILE 137
SL+M +I GSEEQK ++LP LA + I C+ LTEP +GS+ + + T A + WIL
Sbjct: 112 SLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILN 171
Query: 138 GQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILL 197
G K WI N ADV ++A+ T + I G+LV D PG T +I K+ LR +++L
Sbjct: 172 GTKMWITNGNLADVATVWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVL 229
Query: 198 KKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPL 257
V +P +LP L +R + + +G + + Y + R+ F PL
Sbjct: 230 DNVRLPASAQLPLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPL 289
Query: 258 AAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGR 317
+ +Q+ Q+KL M + +L+ L ++ + + P SLGK RE +A+ R
Sbjct: 290 SNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGK---LNNVREAIAIAR 346
Query: 318 E---LLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 366
E LLGG+GI ++ + ++E + TYEGT +++ L G+ +TG A+F+
Sbjct: 347 ECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFR 398
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 167/337 (49%), Gaps = 7/337 (2%)
Query: 24 FPFHVIPKLGAL-RVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML 82
FP + K+G L +A + G +IA+ EI+R AS + V++SL +
Sbjct: 42 FPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLG 101
Query: 83 TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 142
I GS +QKQ+++ + I C+AL+EP GSDA A +TTA + W+L G K W
Sbjct: 102 PILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAW 161
Query: 143 IGNSTFADVLVIFARNTTTNQ---INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKK 199
I NS A V+FA + Q I+ +LV PGLT+ K E+K+G+R +++ +
Sbjct: 162 ITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFED 221
Query: 200 VFVPDEDRL--PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPL 257
+P E+ L PG+ F+ + L + R+ +A Q +GI+ D +Y + R FGAPL
Sbjct: 222 CRIPKENLLGEPGMG-FKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPL 280
Query: 258 AAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGR 317
Q Q KL M +++ L+ WR L + +++ K + A
Sbjct: 281 TKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAI 340
Query: 318 ELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLV 354
++LGG G +++ + + D YEGT +I LV
Sbjct: 341 QILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLV 377
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 176/349 (50%), Gaps = 8/349 (2%)
Query: 17 QYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75
+Y EK E P+ VI KL + + I + YG G + I E+A T I +
Sbjct: 30 EYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYT-IPM 88
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 135
S L + + L G+EEQK+++L L + +A +AL+EP GSDA+AL T A + ++
Sbjct: 89 ASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYV 148
Query: 136 LEGQKRWIGNSTFADVLVIFARNTTTNQING---YLVKKDAPGLTVTKIENKIGLRIVQN 192
L G K WI N A+ +V+FA + G +V++ PG KI K+G R
Sbjct: 149 LNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGT 208
Query: 193 GDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERK 251
+++ + V VP E+RL F+ + L +R+ VA +G++ D +Y KER+
Sbjct: 209 YELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKERE 268
Query: 252 QFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHAS-LGKSWITARAR 310
FG P+A FQ Q KLV ML I+ + + L ++G + HAS + K++ + A
Sbjct: 269 AFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQG-LPHAHASAIAKAYASEIAF 327
Query: 311 ETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359
E ++ GG G + +F V K D++ YEGT +I L+ R +
Sbjct: 328 EAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHI 376
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 165/337 (48%), Gaps = 7/337 (2%)
Query: 24 FPFHVIPKLGAL-RVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML 82
FP + K+G L +A + G G AIA+ EI+R AS + V++SL +
Sbjct: 38 FPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLG 97
Query: 83 TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 142
I GS+EQKQ ++ + I C+AL+EP GSDA A +TTA W+L G K W
Sbjct: 98 PILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAW 157
Query: 143 IGNSTFADVLVIFA---RNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKK 199
I N+ A V+FA R I+ +LV PGLT+ K E+K+G+R +++ +
Sbjct: 158 ITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFED 217
Query: 200 VFVPDEDRL--PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPL 257
+P + L PG+ F+ + L + R+ +A Q +GI+ D Y + R FGAPL
Sbjct: 218 CRIPKDSILGEPGMG-FKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPL 276
Query: 258 AAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGR 317
Q+ Q KL M +++ L+ WR L + A++ K + A
Sbjct: 277 TKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAI 336
Query: 318 ELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLV 354
++LGG G +++ + + D YEGT +I LV
Sbjct: 337 QILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLV 373
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 155/311 (49%), Gaps = 5/311 (1%)
Query: 45 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 104
YG G S + I E+A+VDAS + F + ++L I G+EEQK YLP L
Sbjct: 83 YGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLT-TE 141
Query: 105 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--- 161
+ + L+E GSD+ AL T A K ++L G K WI ++ A + ++ A T
Sbjct: 142 KVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGY 201
Query: 162 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 220
I +LV +D PGL + K ENK+GLR + + V VP+ + L + + ++
Sbjct: 202 KGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGS 261
Query: 221 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILV 280
L R+ +A Q +G++ G +D Y+KER QFG L FQ Q ++ + ++A L+
Sbjct: 262 LNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLL 321
Query: 281 GWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEP 340
+ +L E G AS+ K + + A +T + E +GG G D+ V K F D +
Sbjct: 322 TYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKI 381
Query: 341 IYTYEGTYDIN 351
YEG +I
Sbjct: 382 GTIYEGASNIQ 392
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 178/351 (50%), Gaps = 16/351 (4%)
Query: 17 QYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75
+Y KAE+P+ + L L + G T + +G G A+A+ E+A D S + + V
Sbjct: 28 EYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSV 87
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 135
S L + GSE QK++YL LA+ I + LTEP GSDA +L A +V+GG++
Sbjct: 88 TSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFV 147
Query: 136 LEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI 195
L G K WI ++ A + V+ AR T I+ +LV+K PGL+ + E K+GL ++
Sbjct: 148 LNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEV 205
Query: 196 LLKKVFVPDEDRLPGVNSFQDTSKVLAVS-------RVMVAWQPIGISMGVYDMCHRYLK 248
L++VFVP+E N + + LA + RV VA Q +GI+ G +++ Y +
Sbjct: 206 RLEEVFVPEE------NLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAE 259
Query: 249 ERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 308
ER+QFG L Q K+ M I A + + ++G AS K + +A
Sbjct: 260 EREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAA 319
Query: 309 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359
A E ++LGG G D+ V + + D + YEGT +I LV RE+
Sbjct: 320 AVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIAREL 370
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 164/349 (46%), Gaps = 17/349 (4%)
Query: 20 EKAEFPFHVIPKLGALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75
EKA FP L AL +G + + YG G I I E+ARVD S S V
Sbjct: 47 EKARFPEEA---LAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV 103
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 135
+ L + + L GSEE K++ LP++A +A +AL+E GSDA+++ T A WI
Sbjct: 104 NK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWI 162
Query: 136 LEGQKRWI---GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQN 192
L G K WI G ST+ V+ + + N I+ ++V KD G TV E K+G++
Sbjct: 163 LNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPT 222
Query: 193 GDILLKKVFVPDEDRL---PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE 249
++ + +P DR+ PG F+ L +R + Q +GI+ G D Y KE
Sbjct: 223 TELYFENCRIPG-DRIIGEPGTG-FKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKE 280
Query: 250 RKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG-KSWITAR 308
RKQFG P++ Q Q L M I+A L+ + E+G G S K + +
Sbjct: 281 RKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDV 340
Query: 309 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 357
A E +L GG G DF V + D + YEGT I +V R
Sbjct: 341 AMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSR 389
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 165/345 (47%), Gaps = 9/345 (2%)
Query: 24 FPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML 82
FP+ ++ KL V G + + YG G S A + IA D + + + H+SLA
Sbjct: 39 FPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATG 98
Query: 83 TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 142
I L GSE QK+ +LP LA + W LTEP GSDA+AL T A KVEGGW L G K++
Sbjct: 99 HILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQF 158
Query: 143 IGNSTFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI 195
I + A V V+ AR I+ + + GL V + E K+GL +
Sbjct: 159 ITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQL 218
Query: 196 LLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG 254
+L+ +FVP+E L F D +VL R+ +A +G+ D Y K R+ FG
Sbjct: 219 ILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFG 278
Query: 255 APLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314
P+A F+ KL + ++A L+ + +L + G A+ K + + A +
Sbjct: 279 RPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACD 338
Query: 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359
++LGG G + D+ V + + D EGT +I LV R +
Sbjct: 339 EAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRL 383
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 143/296 (48%), Gaps = 18/296 (6%)
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 133
H+S+ L + G+EEQK+KYLP LA IA + LTEP GSDA A T AT E G
Sbjct: 113 HTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKH 172
Query: 134 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNG 193
+IL G K+WI N+ FA + +FA+ +LV++D PGL+ E K+G++
Sbjct: 173 YILNGVKQWISNAGFAHLFTVFAK-VDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTR 231
Query: 194 DILLKKVFVPDEDRLPGVNSFQDTS-KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQ 252
++L+ V VP E+ L + + VL V R + +G + ++ +Y +R Q
Sbjct: 232 QVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQ 291
Query: 253 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---GAMTPGHASLGKSWITARA 309
FG P+ F + QQKL +M I A +R L ++ G P G A
Sbjct: 292 FGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEA 351
Query: 310 RETVALGRELL-----------GGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLV 354
LG E+L GG G ++ + +A+ D +EGT +IN L+
Sbjct: 352 SIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLL 407
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 175/374 (46%), Gaps = 27/374 (7%)
Query: 6 DFCIFFLNLLFQYWEKAEFPFHV--IPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 62
DF + + +Y E+ EF V + + G L + G + + YG G +A+ +
Sbjct: 46 DFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKF 105
Query: 63 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASA 122
+R T H + L I L G+EEQK+KYLP LA +A +ALTEP GSDA
Sbjct: 106 SRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALG 164
Query: 123 LNTTAT-KVEG-GWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 180
TTA EG ++L G+K+WI NS FADV +++A+ + ++V+KD G++ +
Sbjct: 165 AKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEHFSAFIVEKDYAGVSTSP 223
Query: 181 IENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS-KVLAVSRVMVAWQPIGISMGV 239
E K G++ ++L+ VP E+ L + + +L + R + +G +
Sbjct: 224 EEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRA 283
Query: 240 YDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT----- 294
++ +Y +R+QF P+A F + Q+KL A +R L+E T
Sbjct: 284 VEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAAESSVYRTVGLFESRXSTLSEEE 343
Query: 295 --PGHA------------SLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEP 340
G A SL K + + TV G ++ GG G +++ + + + D
Sbjct: 344 VKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRI 403
Query: 341 IYTYEGTYDINTLV 354
+EGT +IN L+
Sbjct: 404 NRIFEGTNEINRLI 417
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 166/363 (45%), Gaps = 20/363 (5%)
Query: 3 QRVDFCIFFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAE 61
Q +D F NL ++W++ LG L V G T YG G + + E
Sbjct: 37 QEIDRSNEFKNLR-EFWKQ----------LGNLGVLGITAPVQYGGSGLGYLEHVLVMEE 85
Query: 62 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDAS 121
I+R + HS+L + + G+E QK+KYLP L I A++EP GSD
Sbjct: 86 ISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVV 145
Query: 122 ALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT-----TTNQINGYLVKKDAPGL 176
++ A K +IL G K WI N ADVL+++A+ + I ++V+K PG
Sbjct: 146 SMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGF 205
Query: 177 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGI 235
+ +K +K+G+R +++ + +P + L N L + R+++A P+G+
Sbjct: 206 STSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGL 265
Query: 236 SMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP 295
V D YL R+ FG + FQ+ Q K+ M + A + + K ++G T
Sbjct: 266 MQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTA 325
Query: 296 GHASLGKSWITARARETVAL-GRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLV 354
+ G +A VAL G + GGNG ++DF + + D + GT ++ LV
Sbjct: 326 KDCA-GVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLV 384
Query: 355 TGR 357
GR
Sbjct: 385 IGR 387
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 7/306 (2%)
Query: 57 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 116
+A+ E+A+ DA + + SL I G+E QK+K+L L + + + LTEP
Sbjct: 74 LAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNA 133
Query: 117 GSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGYLVKKD 172
G+DAS T ATK + G + L G K +I N AD+ ++FA ++ + I ++++
Sbjct: 134 GTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDG 193
Query: 173 APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQ 231
PG T K E+K+G+ Q +++ + V VP E+ L F+ L R+ VA Q
Sbjct: 194 TPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQ 253
Query: 232 PIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMI-LVGWRLCKLYEK 290
+GI+ Y K+R QFG PL FQ KL M I+A LV CK E
Sbjct: 254 ALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEG 313
Query: 291 GAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDI 350
T A++ K + A ++ GG G ++ VA+ D + YEGT ++
Sbjct: 314 KPFTV-DAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEV 372
Query: 351 NTLVTG 356
+VTG
Sbjct: 373 QLMVTG 378
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 172/361 (47%), Gaps = 21/361 (5%)
Query: 17 QYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG--HSVTGAAIAIAEIARVDASCSTF 72
Q+ + FP+ + +G L G I + YG G A I EIAR ++
Sbjct: 30 QWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQ 89
Query: 73 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG 132
+ + TI GSE K+KY+P L+ + + +TEP GSD A+++TA
Sbjct: 90 LNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGD 149
Query: 133 GWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGYLVK-KDAPGLTVTKIENKIGLR 188
W+L G K WI N+ ADVL+ +A + + ++ ++++ ++ PG+ + +E K+G
Sbjct: 150 HWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSH 208
Query: 189 IVQNGDILLKKVFVPDEDRL--PGVNSFQDTSKV----LAVSRVMVAWQPIGISMGVYDM 242
G++ L V VP E+ L PG D +++ L +R+ A +G++ D
Sbjct: 209 ASPTGELFLDNVKVPKENILGKPG-----DGARIVFGSLNHTRLSAAAGGVGLAQACLDA 263
Query: 243 CHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPG-HASLG 301
+Y ER+QFG P+ FQ+NQ + QM ++A L+ ++ ++G + G ++
Sbjct: 264 AIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMA 323
Query: 302 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361
K + +LG G +++ VA+ + D Y EG+ +I ++ + G
Sbjct: 324 KYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLG 383
Query: 362 I 362
+
Sbjct: 384 V 384
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 7/289 (2%)
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 136
+SL + I + G+++QK+KYL + + + + +TEP GSD + + T A K +I+
Sbjct: 126 NSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 185
Query: 137 EGQKRWIGNSTFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIV 190
GQK WI N A+ + AR+ G++V+ D PG+ + + E +G R
Sbjct: 186 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 245
Query: 191 QNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE 249
I+ + V VP E+ L G + F+ +R +VA +G++ D +Y E
Sbjct: 246 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALE 305
Query: 250 RKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARA 309
RK FG L Q L +M ++ + R + G +AS+ K++ A
Sbjct: 306 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 365
Query: 310 RETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 358
+ ++LGGNG +++ V K D + YEGT I L+ RE
Sbjct: 366 NQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 414
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 7/289 (2%)
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 136
+SL + I + G+++QK+KYL + + + + +TEP GSD + + T A K +I+
Sbjct: 101 NSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 160
Query: 137 EGQKRWIGNSTFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIV 190
GQK WI N A+ + AR+ G++V+ D PG+ + + E +G R
Sbjct: 161 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 220
Query: 191 QNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE 249
I+ + V VP E+ L G + F+ +R +VA +G++ D +Y E
Sbjct: 221 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALE 280
Query: 250 RKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARA 309
RK FG L Q L +M ++ + R + G +AS+ K++ A
Sbjct: 281 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 340
Query: 310 RETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 358
+ ++LGGNG +++ V K D + YEGT I L+ RE
Sbjct: 341 NQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVARE 389
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 6/293 (2%)
Query: 73 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG 132
I +H+ + IA G+EEQKQK+LP I A+TEP GSD + ++TTA K
Sbjct: 91 IGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGD 150
Query: 133 GWILEGQKRWIGNSTFADVLVIFARNTTTNQ-----INGYLVKKDAPGLTVTKIENKIGL 187
+I+ GQK +I N AD++V+ + + I+ +V++D PG T + K+GL
Sbjct: 151 YYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGL 210
Query: 188 RIVQNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 246
++ + VP + L F + L R++VA + ++ + +Y
Sbjct: 211 HAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQY 270
Query: 247 LKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 306
+K+R FG ++ FQ Q +L +M I R+ + + G S+ K WIT
Sbjct: 271 VKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWIT 330
Query: 307 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359
A+ A +L GG G + ++ +A+ + DI Y GT ++ + R++
Sbjct: 331 EMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 7/289 (2%)
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 136
+SL + I + G+++QK+KYL + + + + +TEP GSD + + T A K +I+
Sbjct: 101 NSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 160
Query: 137 EGQKRWIGNSTFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIV 190
GQK WI N A+ + AR+ G++V+ D PG+ + + E +G R
Sbjct: 161 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 220
Query: 191 QNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE 249
I+ + V VP E+ L G + F+ R +VA +G++ D +Y E
Sbjct: 221 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALE 280
Query: 250 RKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARA 309
RK FG L Q L +M ++ + R + G +AS+ K++ A
Sbjct: 281 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 340
Query: 310 RETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 358
+ ++LGGNG +++ V K D + Y GT I L+ RE
Sbjct: 341 NQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVARE 389
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 20/309 (6%)
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 133
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 113 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 172
Query: 134 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 185
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 186 GLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 244
G++ ++ V VP E+ L V S F+ +L R +A G G+
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 292
Query: 245 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGKS 303
+ R QFG + F + Q+KL +M+ + + + ++GA A++ K
Sbjct: 293 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 352
Query: 304 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVT-------- 355
+ + A + +++GG G + + V + D+ +EGT DI L
Sbjct: 353 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 412
Query: 356 GREVTGIAS 364
G+E++G+ S
Sbjct: 413 GKELSGLGS 421
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 20/309 (6%)
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 133
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 133 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 192
Query: 134 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 185
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 186 GLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 244
G++ ++ V VP E+ L V S F+ +L R +A G G+
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 312
Query: 245 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGKS 303
+ R QFG + F + Q+KL +M+ + + + ++GA A++ K
Sbjct: 313 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 372
Query: 304 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVT-------- 355
+ + A + +++GG G + + V + D+ +EGT DI L
Sbjct: 373 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432
Query: 356 GREVTGIAS 364
G+E++G+ S
Sbjct: 433 GKELSGLGS 441
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 9/353 (2%)
Query: 17 QYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75
+Y E+P ++ + L + I + +G G + + + E+A T I
Sbjct: 31 EYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA 90
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 135
++ L + + + G+ +Q++KYL + + + + +TEP GSD + + T A K +I
Sbjct: 91 NT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 149
Query: 136 LEGQKRWIGNSTFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRI 189
+ GQK WI N A+ + AR+ + G++V+ D PG+ + + E +G R
Sbjct: 150 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 209
Query: 190 VQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLK 248
I+ + V VP E+ L G + F+ +R VA +G++ D +Y
Sbjct: 210 SDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYAL 269
Query: 249 ERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 308
ERK FG LA Q L M ++ L R + G +AS+ K++
Sbjct: 270 ERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADI 329
Query: 309 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361
A + ++ GGNG +++ V K D + YEGT I ++ RE G
Sbjct: 330 ANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIG 382
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 9/353 (2%)
Query: 17 QYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75
+Y E+P ++ + L + I + +G G + + + E+A T I
Sbjct: 41 EYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA 100
Query: 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWI 135
++ L + + + G+ +Q++KYL + + + + +TEP GSD + + T A K +I
Sbjct: 101 NT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 159
Query: 136 LEGQKRWIGNSTFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRI 189
+ GQK WI N A+ + AR+ + G++V+ D PG+ + + E +G R
Sbjct: 160 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 219
Query: 190 VQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLK 248
I+ + V VP E+ L G + F+ +R VA +G++ D +Y
Sbjct: 220 SDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYAL 279
Query: 249 ERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 308
ERK FG LA Q L M ++ L R + G +AS+ K++
Sbjct: 280 ERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADI 339
Query: 309 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361
A + ++ GGNG +++ V K D + YEGT I ++ RE G
Sbjct: 340 ANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIG 392
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 13/309 (4%)
Query: 59 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGS 118
+ EIA AS + + VHS L+ + + G+EEQK+++LP + I ++L+EP GS
Sbjct: 84 LEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGS 142
Query: 119 DASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ-INGYLVKKDAPGLT 177
DA+AL AT +GG+++ G K WI + AD +FAR ++ ++ +LV D PGL+
Sbjct: 143 DAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGEGSRGVSCFLVPADQPGLS 202
Query: 178 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV--NSFQDTSKVLAVSRVMVAWQPIGI 235
K E K+GL V + D DR G Q L R+ +A G+
Sbjct: 203 FGKPEEKMGLHAVPTTSAFYDNARI-DADRRIGEEGQGLQIAFSALDSGRLGIAAVATGL 261
Query: 236 SMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRL----CKLYEKG 291
+ D Y ER FG + I+ Q L +L ++ A + + ++G
Sbjct: 262 AQAALDEAVAYANERTAFGRKI----IDHQGLGFLLADMAAAVATARATYLDAARRRDQG 317
Query: 292 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDIN 351
AS+ K T A + ++ GG G D+ V + + + + +EGT I
Sbjct: 318 RPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQ 377
Query: 352 TLVTGREVT 360
LV R +T
Sbjct: 378 RLVIARGLT 386
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 7/347 (2%)
Query: 19 WEKAE-FPFHVIPKLGALRVAGGTIK-GYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 76
W++ E FP V+ K L G I+ G G S ++ +A S + +I +H
Sbjct: 45 WDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH 104
Query: 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 136
+ A + + G+EEQ+ K+ P L + A + LTEP GSDA++L T+A K +IL
Sbjct: 105 NMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYIL 163
Query: 137 EGQKRWIGNSTFADVLVIFARN--TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGD 194
G K +I + +D+ V+ R I+ +V+K PGL+ K E K+G
Sbjct: 164 NGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRA 223
Query: 195 ILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 253
++ + VP +R+ F + L R+ +A +G + + +L RKQF
Sbjct: 224 VIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQF 283
Query: 254 GAPLAAFQINQQKLVQMLGN-IQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARET 312
G PLA+ Q Q L M + A ++V L E+ S+ K + T
Sbjct: 284 GEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAI 343
Query: 313 VALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359
++ GG G L D+ V + D EG+ ++ ++ R +
Sbjct: 344 CNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSL 390
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 136/318 (42%), Gaps = 5/318 (1%)
Query: 46 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 104
G G+++ A + A +A ++ L +A+ IA GS+ ++Y+ P+LA
Sbjct: 85 GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 105 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--N 162
I +TEP GSD + L T A + +++ G K +I + AD + R
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYG 203
Query: 163 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVL 221
++ ++ K++PG V++ +K+G R ++ V VP ++ + NS F +
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263
Query: 222 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVG 281
R+ +A Q + D+ + +ER+ FG PL QI + KL +M +
Sbjct: 264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYT 323
Query: 282 WRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 341
+ + + G S+ K+ V ++ GG G + + + + + D +
Sbjct: 324 RAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRIL 383
Query: 342 YTYEGTYDINTLVTGREV 359
GT +I V + +
Sbjct: 384 GIGGGTNEIMNEVIAKRI 401
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 17/298 (5%)
Query: 63 ARVDASCSTF--ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA 120
A V + CS+ ++ +A T+ G Q+ +L L +A +E GSD
Sbjct: 62 AHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTS-GKLAAVGFSERQAGSDL 120
Query: 121 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTK 180
SA+ T +++G K W + +AD LV+F + +V D PG+ V +
Sbjct: 121 SAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV-VVVPADTPGVRVER 179
Query: 181 IENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQD--TSKVLAVSRVMVAWQPIGISMG 238
+ G R + D+ L +V VP L G + + LA R VAW +GI
Sbjct: 180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRA 239
Query: 239 VYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKL----YEKGA-- 292
+ + R+QFG PL Q+ + + Q + R+C+ +++G+
Sbjct: 240 CRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQ----IAARVCEYASDHWDEGSPE 295
Query: 293 MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDI 350
M P L K RA A ++L G +V +A+ D + + EG+ ++
Sbjct: 296 MVPA-TILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEM 352
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 148/364 (40%), Gaps = 74/364 (20%)
Query: 72 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 128
F +H + + I G+++Q++K+LP ++ I C+A TE +GS+ L TTAT
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDP 176
Query: 129 ----KVEGGWILEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------- 170
V L K W G ST A V++AR T + +NG++V+
Sbjct: 177 QTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDH 233
Query: 171 KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK-------- 219
K PG+TV I K G + NG + V +P + L V+ K
Sbjct: 234 KPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPR 293
Query: 220 ------VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQQK 266
++ V + +VA + +S V + RY R+QFG+ + ++ Q +
Sbjct: 294 QLLYGTMVYVRQSIVADASLAMSRAVC-IATRYSAVRRQFGSQNGGQETQVIDYKTQQNR 352
Query: 267 LVQMLGNIQAMILVGWRLCKLY----------EKGAMTPGHASLG--KSWITARARETVA 314
L +L + A VG L LY + + HA KS T+ + +
Sbjct: 353 LFPLLASAYAFRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIE 412
Query: 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGT-------------YDINTLVTGREVTG 361
R+L GG+G L + + F P TYEG I+ L TG++ G
Sbjct: 413 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVG 472
Query: 362 IASF 365
S+
Sbjct: 473 TVSY 476
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 20/286 (6%)
Query: 88 GSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGW-ILEGQKRWIGN 145
GS+EQK+ +L L + + + + +TEP SDA+ + TA VEG ++ G+K W
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVINGRKWWSTG 183
Query: 146 STFADVLVIFARNTTTNQINGY------LVKKDAPGLTVTKIENKIGLRIVQNGD--ILL 197
D VI T + Y LV D PG+TV ++ +G G +
Sbjct: 184 VGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSF 243
Query: 198 KKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGIS-MGVYDMCHRYLKERKQFGA 255
V +P + + G F+ L RV A + IG++ + + C R L +R FG
Sbjct: 244 DNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGL-DRTAFGK 302
Query: 256 PLAAFQINQQKLVQMLGNI-QAMILV---GWRLCKLYEKGAMTPGHASLGKSWITARARE 311
PL N++++ I Q +LV W L + GA++ S K A++
Sbjct: 303 PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSA--VSEIKVAAPNMAQQ 360
Query: 312 TVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 357
+ + ++ GG G+ +DF +A A+ + + +G +++ V R
Sbjct: 361 VIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVAR 406
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 8/209 (3%)
Query: 75 VHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK 129
V++SL IA+ G + Y+ + I A+TEP GSD L T A
Sbjct: 106 VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADL 165
Query: 130 VEGGWILEGQKRWIGNSTFADVLVIFARN--TTTNQINGYLVKKDAPGLTVTKIENKIGL 187
+++ G K +I + AD +V AR ++ +V K PG VT+ +K+G
Sbjct: 166 DGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGW 225
Query: 188 RIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 246
R ++ V VP + + N+ F + RV +A Q + D+ +
Sbjct: 226 RSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEW 285
Query: 247 LKERKQFGAPLAAFQINQQKLVQMLGNIQ 275
+ R FG PL + Q Q L M I
Sbjct: 286 CRNRDTFGRPLISRQAVQNTLAGMARRID 314
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 61/332 (18%)
Query: 72 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 128
++ +H + + I G+EEQ++K+L ++ I C+A TE +GS+ L TTAT
Sbjct: 98 YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDP 157
Query: 129 KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVKKDA---- 173
K + I K W G ST A V++AR T + I+G++V+ +
Sbjct: 158 KTDEFVIHTPTQTASKWWPGGLGKVSTHA---VVYARLITNGKDYGIHGFIVQLRSLEDH 214
Query: 174 ---PGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSF--------QDTSK 219
P +TV I K+G + NG ++ V +P + L ++ D K
Sbjct: 215 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPK 274
Query: 220 VLA------VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQQK 266
L V + +VA +S V + RY R+QFGA + ++ Q +
Sbjct: 275 QLVYGTMVYVRQTIVADASNALSRAVC-IATRYSAVRRQFGAHNGGIETQVIDYKTQQNR 333
Query: 267 LVQMLGNIQAMILVG----WRLCKLYEKGA------MTPGHASLG--KSWITARARETVA 314
L +L + A VG W + E+ A + HA KS T + +
Sbjct: 334 LFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIE 393
Query: 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEG 346
R+L GG+G L + + F P TYEG
Sbjct: 394 ECRKLCGGHGYLWCSGLPELFAVYVPACTYEG 425
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 16/196 (8%)
Query: 81 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 139
M + L GSEEQK+++L L Q N +C+ +TEP SDA+ + + + E +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 140 KRW---IGNSTFADVLVIFARNTTTN-----QINGYLVKKDAPGLTVTKIENKIGLRIVQ 191
K W GN + ++ R T+ Q + LV + PG+ + + + G
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNF 242
Query: 192 NG---DILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGIS-MGVYDMCHRY 246
+G +I +V VP + + G F+ + L R+ + +G++ + MC R
Sbjct: 243 HGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCER- 301
Query: 247 LKERKQFGAPLAAFQI 262
+R F L A ++
Sbjct: 302 ATQRIAFKKKLYAHEV 317
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 19/237 (8%)
Query: 43 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 102
+ YG G A + EIA D S H + A + I L GS+EQ++ +AQ
Sbjct: 84 REYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQ 142
Query: 103 LNTIACWALTEPAYGSDASALN--TTATKVE-GGWILEGQKRWIGNSTFADVLVIFARNT 159
N W + +++ L+ +AT E GG++L G K + + +D+L +F
Sbjct: 143 NN----WWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQ 198
Query: 160 TTNQINGYLVKKDAP----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF- 214
+ G ++ P G+T IG+R +G V V ++ L N+F
Sbjct: 199 DDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFV 258
Query: 215 ------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQ 265
+ S +++++ A +GI+ G D Y + + + P Q +
Sbjct: 259 LAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATED 315
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 121 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN---QINGYLVKKDAPGLT 177
+A+ T GGW+L G+K + + VI AR T+ ++ +V +D PG T
Sbjct: 150 TAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFT 209
Query: 178 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLA---VSRVMVAWQPIG 234
V + +G+R DI+ +P + L VLA VS V V +G
Sbjct: 210 VLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVG 269
Query: 235 ISMGVYDMCHRYLKERKQ 252
++ YD L+ R +
Sbjct: 270 VAQAAYDTAVAALERRPE 287
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 118/326 (36%), Gaps = 68/326 (20%)
Query: 16 FQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG-----AAIAIAEIARVDASCS 70
Q+ + F A V+ G +KG P H TG +AI + E V+ S +
Sbjct: 34 LQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAA 93
Query: 71 TFILVHSSLAMLTIALCGSEEQKQKYLPSLA-QLNTIACWALTEP-----AYGSDASALN 124
I + L + I L + + P L+ + + +A +EP A A
Sbjct: 94 LTIFA-TGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQ 152
Query: 125 TTATKVEGG-WILEGQKRWIGNST-----FADVLVIFARNTTTNQINGYLVKKDAPGLTV 178
TTA ++EG W++ G+K W N D+ + R+ TT G
Sbjct: 153 TTA-RLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEG------------ 199
Query: 179 TKIENKIGLRIVQNGDI---------LLKKVFVPDEDRLPG-----VNSFQDTSKVLAV- 223
ENK+ + +V D+ +L+ V P + G N T VL
Sbjct: 200 QDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPA 259
Query: 224 -------------SRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-PLAAFQINQQKLVQ 269
S V+V +G+ +D ++ KE + GA PL + +Q
Sbjct: 260 GQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPL----LERQAFAD 315
Query: 270 MLGNI----QAMILVGWRLCKLYEKG 291
+L + +A + W+ E G
Sbjct: 316 LLSGVKIQTEAARALTWKAAHAMENG 341
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 39 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 98
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 99 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 118/332 (35%), Gaps = 49/332 (14%)
Query: 75 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--KVEG 132
+H + + T+ + EQ++++ L +A TE +G+ L TTAT
Sbjct: 102 LHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQ 161
Query: 133 GWILEGQ-----KRWIG----NSTFADVLVIFARNTTTNQINGYLV-------KKDAPGL 176
+IL K W G S A VL ++ ++V K PG+
Sbjct: 162 EFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGI 221
Query: 177 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--------------PGVNSFQDTSKVLA 222
TV I K G + NG + + +P E+ L P N + V
Sbjct: 222 TVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFV 281
Query: 223 VSRVM-VAWQPIGISMGV---YDMCHRYLKERKQFGAP-LAAFQINQQKLVQMLGNIQAM 277
S ++ A Q + + + Y R + ++ P + FQ Q KL +L A
Sbjct: 282 RSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAF 341
Query: 278 ILVGWRLCKLYEKGAMTPGHASLG------------KSWITARARETVALGRELLGGNGI 325
VG + + Y + + G L K++ T A + R GG+G
Sbjct: 342 HFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGY 401
Query: 326 LSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 357
+ + P T+EG + L T R
Sbjct: 402 SHSSGIPNIYVTFTPACTFEGENTVMMLQTAR 433
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 50 HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL--AQLNTIA 107
S+ +I + E+ V+ + S I V ++L + + LC S ++K+L + +A
Sbjct: 71 ESLVHESIILEELFAVEPATSITI-VATALGLXPVILCDSPSLQEKFLKPFISGEGEPLA 129
Query: 108 CWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 146
+EP ++ L TTA KV W++ G+K W NS
Sbjct: 130 SLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 94 QKYLPSLAQLNTIACWALTEPAYGSDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVL 152
++ L ++A+ C AL DA + T + GGW+L G+K + + A
Sbjct: 117 ERLLRAMAEGEAAVCGAL------KDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHF 170
Query: 153 VIFARNTTTNQ---INGYLVKKDAPGLTVTKIENKIGLR 188
+ A+ + + +V +DAPGLTV + +G+R
Sbjct: 171 FVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
>pdb|1VMI|A Chain A, Crystal Structure Of Putative Phosphate Acetyltransferase
(Np_416953.1) From Escherichia Coli K12 At 2.32 A
Resolution
Length = 355
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 15 LFQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVT-GAAI-AIAEIARVDA-SCST 71
+F E + + +LG R G I+G P H ++ G ++ I E+A V A T
Sbjct: 278 VFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPXHDLSRGCSVQEIIELALVAAVPRQT 337
Query: 72 FILVHSSLAMLTIALCG 88
+ SSL L LCG
Sbjct: 338 EVNRESSLQTLVEGLCG 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,685,031
Number of Sequences: 62578
Number of extensions: 417288
Number of successful extensions: 907
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 58
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)