Query 017183
Match_columns 376
No_of_seqs 130 out of 1368
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.6E-74 3.5E-79 505.9 22.6 346 2-348 45-397 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 6.8E-71 1.5E-75 475.2 27.3 359 3-362 37-405 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 1E-68 2.3E-73 462.0 24.4 359 2-360 49-418 (421)
4 PLN02526 acyl-coenzyme A oxida 100.0 8.1E-65 1.8E-69 488.4 42.2 374 2-376 37-412 (412)
5 cd01151 GCD Glutaryl-CoA dehyd 100.0 3.1E-64 6.8E-69 481.5 42.6 359 3-362 22-383 (386)
6 cd01162 IBD Isobutyryl-CoA deh 100.0 1.9E-62 4.1E-67 467.7 40.4 359 2-361 9-374 (375)
7 cd01157 MCAD Medium chain acyl 100.0 3E-62 6.5E-67 467.0 39.9 360 2-362 9-378 (378)
8 cd01156 IVD Isovaleryl-CoA deh 100.0 4.3E-62 9.3E-67 465.8 40.6 360 2-361 10-376 (376)
9 cd01160 LCAD Long chain acyl-C 100.0 7.1E-62 1.5E-66 463.6 40.6 356 3-359 8-371 (372)
10 PLN02519 isovaleryl-CoA dehydr 100.0 8.9E-62 1.9E-66 466.7 41.1 360 3-362 35-403 (404)
11 PRK12341 putative acyl-CoA deh 100.0 2.5E-61 5.4E-66 460.7 40.5 352 6-361 18-378 (381)
12 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.8E-61 3.9E-66 460.4 38.9 353 3-358 10-370 (372)
13 PTZ00461 isovaleryl-CoA dehydr 100.0 2.4E-61 5.3E-66 464.5 39.5 358 2-361 45-407 (410)
14 cd01158 SCAD_SBCAD Short chain 100.0 1.4E-60 3.1E-65 454.9 40.0 360 2-361 7-373 (373)
15 PRK03354 crotonobetainyl-CoA d 100.0 1.6E-60 3.4E-65 454.9 40.1 356 3-361 14-377 (380)
16 cd01161 VLCAD Very long chain 100.0 6.7E-60 1.5E-64 454.6 39.4 354 6-362 40-407 (409)
17 TIGR03203 pimD_small pimeloyl- 100.0 4.1E-60 9E-65 450.5 36.8 351 2-357 12-374 (378)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 6.3E-59 1.4E-63 445.9 37.8 359 2-360 7-393 (394)
19 PRK09463 fadE acyl-CoA dehydro 100.0 4.9E-58 1.1E-62 460.0 39.0 334 21-355 107-466 (777)
20 KOG0138 Glutaryl-CoA dehydroge 100.0 8.3E-59 1.8E-63 399.4 27.1 365 3-367 64-432 (432)
21 cd01153 ACAD_fadE5 Putative ac 100.0 8E-57 1.7E-61 432.7 39.7 353 2-359 2-406 (407)
22 PRK13026 acyl-CoA dehydrogenas 100.0 5.7E-57 1.2E-61 450.6 38.4 334 18-355 103-465 (774)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 3.5E-56 7.6E-61 427.3 37.0 360 6-365 18-392 (393)
24 TIGR03204 pimC_large pimeloyl- 100.0 2.1E-55 4.6E-60 420.8 39.8 354 2-361 12-394 (395)
25 cd01163 DszC Dibenzothiophene 100.0 4.7E-56 1E-60 424.1 34.4 352 6-363 5-375 (377)
26 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.6E-55 3.5E-60 420.5 33.9 351 3-361 8-380 (380)
27 PTZ00456 acyl-CoA dehydrogenas 100.0 1.1E-54 2.4E-59 431.3 39.6 359 2-364 64-483 (622)
28 KOG0137 Very-long-chain acyl-C 100.0 3.4E-56 7.4E-61 414.8 24.5 349 13-361 99-460 (634)
29 PLN02636 acyl-coenzyme A oxida 100.0 1.4E-54 3E-59 434.5 36.9 353 3-361 70-485 (686)
30 PLN02876 acyl-CoA dehydrogenas 100.0 4.9E-54 1.1E-58 444.4 37.5 361 2-362 410-819 (822)
31 cd01154 AidB Proteins involved 100.0 6.3E-53 1.4E-57 406.1 37.4 349 3-360 36-417 (418)
32 PLN02312 acyl-CoA oxidase 100.0 3.9E-52 8.5E-57 415.8 36.9 343 17-361 99-487 (680)
33 cd01159 NcnH Naphthocyclinone 100.0 7E-53 1.5E-57 401.1 28.5 340 6-361 5-370 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 1.7E-48 3.8E-53 379.0 36.5 327 27-363 90-443 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.5E-48 5.5E-53 364.2 35.3 278 80-357 44-327 (327)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 8.2E-48 1.8E-52 383.3 31.4 297 66-362 88-432 (646)
37 cd01150 AXO Peroxisomal acyl-C 100.0 1.7E-47 3.7E-52 381.5 30.3 312 51-362 80-445 (610)
38 PTZ00457 acyl-CoA dehydrogenas 100.0 4.6E-45 1E-49 352.7 31.5 290 28-352 55-362 (520)
39 PLN02443 acyl-coenzyme A oxida 100.0 3.6E-44 7.7E-49 357.8 31.4 291 72-362 98-441 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 7.6E-43 1.6E-47 296.6 16.8 332 28-361 32-382 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 8.1E-34 1.7E-38 263.0 21.6 340 19-362 73-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 99.9 4E-25 8.6E-30 213.5 28.4 237 85-327 119-391 (477)
43 KOG0136 Acyl-CoA oxidase [Lipi 99.9 2.2E-25 4.7E-30 211.8 17.6 297 66-362 104-449 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 3E-22 6.5E-27 166.0 18.2 149 212-360 2-150 (150)
45 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 8.4E-16 1.8E-20 124.7 12.6 123 226-348 1-133 (134)
46 PF02771 Acyl-CoA_dh_N: Acyl-C 99.7 2.5E-16 5.3E-21 123.9 8.4 103 2-104 8-113 (113)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4E-15 8.7E-20 99.0 6.6 52 108-159 1-52 (52)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.5 2.4E-11 5.3E-16 117.6 26.8 226 92-323 137-399 (519)
49 COG2368 Aromatic ring hydroxyl 99.5 5E-12 1.1E-16 118.2 21.3 234 87-326 125-398 (493)
50 PF11794 HpaB_N: 4-hydroxyphen 98.9 1E-08 2.2E-13 91.1 9.8 118 91-208 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.5 0.18 3.9E-06 43.7 15.2 71 256-326 43-118 (205)
52 PTZ00457 acyl-CoA dehydrogenas 89.1 7 0.00015 39.0 12.3 79 253-332 429-508 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 88.2 0.49 1.1E-05 37.4 3.1 33 73-105 92-124 (125)
54 KOG0137 Very-long-chain acyl-C 84.3 20 0.00043 35.8 12.1 70 253-322 533-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 35.3 2.2E+02 0.0048 30.2 9.0 99 254-360 560-661 (777)
56 PF12584 TRAPPC10: Trafficking 27.6 1.3E+02 0.0029 24.3 4.8 61 129-199 66-139 (147)
57 PF02084 Bindin: Bindin; Inte 24.4 2.3E+02 0.0051 24.7 5.7 66 19-103 96-163 (238)
58 PF05428 CRF-BP: Corticotropin 23.5 80 0.0017 28.8 2.9 16 131-146 113-128 (311)
59 PF15631 Imm-NTF2-2: NTF2 fold 22.4 1.1E+02 0.0024 21.1 2.8 19 125-143 24-42 (66)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=505.88 Aligned_cols=346 Identities=32% Similarity=0.472 Sum_probs=334.6
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
.+-+ +|++ +|.|...++|++.++|+.+++.+.++|++++.+ ++|||.|.++.....++|||++.|+|++.++.+|+.
T Consensus 45 ~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~nt 124 (398)
T KOG0139|consen 45 QKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNT 124 (398)
T ss_pred HHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEeccc
Confidence 4455 9999 999999999999999999999999999999988 999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
+...+|..+|+++||+.|+|. ..|+.+++||+|||++|||.....|+|++++|.|+|||.|+|+||+..|++++|+|.+
T Consensus 125 L~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~ 203 (398)
T KOG0139|consen 125 LYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANA 203 (398)
T ss_pred ccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEec
Confidence 999999999999999988776 5677799999999999999999999999999999999999999999999999999999
Q ss_pred CCC---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 159 TTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 159 ~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
+.. +++++|+||++.||+++....+++|+|++.++.++|+||+||++++||++ .|+++....++.+|+.++++++|
T Consensus 204 d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~Aqmlg 283 (398)
T KOG0139|consen 204 DPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLG 283 (398)
T ss_pred ChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhh
Confidence 754 78999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
.++.|+|.++.|+++|.+||+++.++|.+|++|+++.+++|++|.++|++++.-+.+.+...+++|+|.++++.+..+..
T Consensus 284 laQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~ 363 (398)
T KOG0139|consen 284 LAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTH 363 (398)
T ss_pred hhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchH
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY 348 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~ 348 (376)
+|+|+.||.||++++|.+|+|||++...|++|++
T Consensus 364 qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts 397 (398)
T KOG0139|consen 364 QCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS 397 (398)
T ss_pred HHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence 9999999999999999999999999999999985
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-71 Score=475.21 Aligned_cols=359 Identities=30% Similarity=0.420 Sum_probs=347.4
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhH
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 79 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 79 (376)
+.+ +|+. ++.|++.++|+.+.||-+++++..++||....+ ++|||.|++..+.+.+.|+|+.+|.++...+..|. +
T Consensus 37 ~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l 115 (408)
T KOG0140|consen 37 EAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-L 115 (408)
T ss_pred HHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-h
Confidence 344 8999 999999999999999999999999999999988 99999999999999999999999999999998887 8
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+.+++..+|+++||++||+.++....++++++|||+.|||.....|+|++.+|.|+|||.|.|+||+.+|+|++|++|++
T Consensus 116 ~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd 195 (408)
T KOG0140|consen 116 AAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTD 195 (408)
T ss_pred hhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC------CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHH
Q 017183 160 TT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQP 232 (376)
Q Consensus 160 ~~------~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~ 232 (376)
++ +.+..|+|+.+.||++...-+.++|.|.+++..|+|+||+||.+++||.+ .|++..+..++-.|..+++.+
T Consensus 196 ~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~a 275 (408)
T KOG0140|consen 196 PDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGA 275 (408)
T ss_pred CCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhh
Confidence 53 56899999999999999999999999999999999999999999999887 788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHH
Q 017183 233 IGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARET 312 (376)
Q Consensus 233 lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~ 312 (376)
+|.++++++++.+|+.+|++||.||++||.+|..|++|.+.++.+|.+++.+++++|.+......++++|.++++.+..+
T Consensus 276 lG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~ 355 (408)
T KOG0140|consen 276 LGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQA 355 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 313 VALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 313 ~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+..++|++||.||.+++|++++.||++...+++|++.+++..|+|.++..
T Consensus 356 at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 356 ATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred HHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999853
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1e-68 Score=461.98 Aligned_cols=359 Identities=27% Similarity=0.411 Sum_probs=346.6
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCC--CHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEF--PFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 76 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~--~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~ 76 (376)
||-+ +|++ +++|++.++|+.+.| .+++|+++.++|++++.. ++|||.|.+....+.++||++++...+++.++.|
T Consensus 49 r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaH 128 (421)
T KOG0141|consen 49 RESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAH 128 (421)
T ss_pred HHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccc
Confidence 5667 9999 999999999999999 589999999999999988 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEE
Q 017183 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 156 (376)
Q Consensus 77 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a 156 (376)
.++++..|...|+++|+++|+|++.+|+-+++.|+|||..|||.....++|++++++|+|||.|.|+||++.||.++|.|
T Consensus 129 SnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyA 208 (421)
T KOG0141|consen 129 SNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYA 208 (421)
T ss_pred cchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHH
Q 017183 157 RNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAW 230 (376)
Q Consensus 157 ~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa 230 (376)
+++.. .++++|||++..||.+..+-.+++|||+++++++.|+|.+||+++++|.+ .+.-+++.-++..|+.+++
T Consensus 209 kTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~ 288 (421)
T KOG0141|consen 209 KTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAA 288 (421)
T ss_pred ecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhcc
Confidence 99632 78999999999999999999999999999999999999999999999987 6777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHH
Q 017183 231 QPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARAR 310 (376)
Q Consensus 231 ~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~ 310 (376)
..+|+++.+++++..|+++|++||++++.||.+|..+++|++.+.++|+++|.+++.-|++..+....+.++.|++|.+.
T Consensus 289 gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~t 368 (421)
T KOG0141|consen 289 GPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKAT 368 (421)
T ss_pred CchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHh
Q 017183 311 ETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 360 (376)
Q Consensus 311 ~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 360 (376)
+++-.++|++||-||..++|..|++||++...+..|++.+.+..|+|++-
T Consensus 369 qVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~ 418 (421)
T KOG0141|consen 369 QVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELN 418 (421)
T ss_pred HHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999875
No 4
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=8.1e-65 Score=488.40 Aligned_cols=374 Identities=86% Similarity=1.349 Sum_probs=347.2
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcccccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhH
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 79 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 79 (376)
++.+ +|++ ++.|...+.|+...+|.+.|++|.+.||+++.+++|||.|+++.+++.++++++++|++++..+.+|..+
T Consensus 37 ~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~ 116 (412)
T PLN02526 37 RKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSL 116 (412)
T ss_pred HHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhh
Confidence 3455 7888 7888888878888899999999999999998778999999999999999999999999988777777656
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+...+..+|+++|+++|++.+.+|+.++++++|||+.|+|...+.|++++++|||+|||+|.|+|++..||+++|.++++
T Consensus 117 ~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~ 196 (412)
T PLN02526 117 AMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNT 196 (412)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCCCcHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 017183 160 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGV 239 (376)
Q Consensus 160 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~~~~~~~~~~~~~rl~~aa~~lG~~~~~ 239 (376)
+++++.+|+||.+.|||++.+.|+++|++++++++++|+||+||++++++...++......+..+|+.+++.++|+++++
T Consensus 197 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~a 276 (412)
T PLN02526 197 TTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGV 276 (412)
T ss_pred CCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999997666666777788999999999999999999
Q ss_pred HHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 017183 240 YDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGREL 319 (376)
Q Consensus 240 l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~~~~ 319 (376)
++.+++|+++|++||+|++++|.+|+++++|..++++++.+++++++.++.+......++++|.++++.+.++++.++++
T Consensus 277 l~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~ 356 (412)
T PLN02526 277 YDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGREL 356 (412)
T ss_pred HHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888765555668899999999999999999999
Q ss_pred hCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcccCCCCccccccccC
Q 017183 320 LGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKPVALATRSRL 376 (376)
Q Consensus 320 ~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 376 (376)
+||.||.++++++|+|||++...+++|++++++..|++.+++++++. ++..|+|||
T Consensus 357 ~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~~~~~-~~~~~~~~~ 412 (412)
T PLN02526 357 LGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASFK-PAASTRSRL 412 (412)
T ss_pred hcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcCcccC-ccccccccC
Confidence 99999999999999999999999999999999999999999999887 666788886
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=3.1e-64 Score=481.50 Aligned_cols=359 Identities=40% Similarity=0.698 Sum_probs=338.4
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhH
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 79 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 79 (376)
+.+ +|++ ++.|.+.+.|+++.+|.++|++|.+.||+++ + ++|||.|+++.++..+++++++.|+++++.+.+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~ 100 (386)
T cd01151 22 DTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSL 100 (386)
T ss_pred HHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhH
Confidence 455 8998 7899998999999999999999999999999 8 9999999999999999999999999998887777656
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+...+..+|+++|+++|++.+.+|+.++++++|||+.|+|+....|+|++++|||+|||+|.|+|++..||+++|.++++
T Consensus 101 ~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~ 180 (386)
T cd01151 101 VMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND 180 (386)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEEC
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCCCcHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 017183 160 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGV 239 (376)
Q Consensus 160 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~~~~~~~~~~~~~rl~~aa~~lG~~~~~ 239 (376)
+++++.+|+||++.|||++.+.|+++|++++++++++|+||+||++++++...++......+...|+.+++.++|+++++
T Consensus 181 ~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~a 260 (386)
T cd01151 181 ETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARYGIAWGALGAAEDC 260 (386)
T ss_pred CCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65678899999999999999999999999999999999999999999998767777777788889999999999999999
Q ss_pred HHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 017183 240 YDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGREL 319 (376)
Q Consensus 240 l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~~~~ 319 (376)
++.+++|+++|.+||+|++++|.+|+++++|.+.++++|++++.+++.++.+.......+++|.++++.+.++++.++|+
T Consensus 261 l~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~~a~~~ 340 (386)
T cd01151 261 YHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREM 340 (386)
T ss_pred HHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876556678999999999999999999999
Q ss_pred hCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 320 LGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 320 ~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+||+||.++++++|+|||++...+++|++.+++..|++.+++.
T Consensus 341 ~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 341 LGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred hcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999986
No 6
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.9e-62 Score=467.67 Aligned_cols=359 Identities=29% Similarity=0.439 Sum_probs=335.3
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ ++.|++.+.|+.+.+|++.|+.|+++||+++.+ ++|||.|.++.+.+.++++++++|+++++++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 87 (375)
T cd01162 9 QEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN- 87 (375)
T ss_pred HHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-
Confidence 4555 8887 899999999999999999999999999999988 99999999999999999999999999998888776
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
.+..++..+|+++|+++|++.+.+|+.++++++|||.+|+|...+.++++++++||+|||+|.|+|++..||+++|++++
T Consensus 88 ~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~ 167 (375)
T cd01162 88 MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMART 167 (375)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEe
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHH
Q 017183 159 TTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGI 235 (376)
Q Consensus 159 ~~~--~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~ 235 (376)
++. .++++|+||++.|||++.+.|+++|+++++++++.||||+||+++++|.. +++......+...|+.+++.++|+
T Consensus 168 ~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~ 247 (375)
T cd01162 168 GGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGA 247 (375)
T ss_pred cCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 46889999999999999999999999999999999999999999999876 566777778888999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhhHHHHHHHHHHHHHH
Q 017183 236 SMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWITARARETVA 314 (376)
Q Consensus 236 ~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~K~~~~~~a~~~~~ 314 (376)
++++++.+++|+++|++||+|++++|.+|+++++|.+++++++++++.+++.++.+.+ ....++++|.++++.+.++++
T Consensus 248 a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~ 327 (375)
T cd01162 248 AQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVAN 327 (375)
T ss_pred HHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988743 344578899999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
.+++++||.||.++++++|+|||+++..+++|++++++..+++.+++
T Consensus 328 ~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 328 QALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999876
No 7
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=3e-62 Score=467.02 Aligned_cols=360 Identities=27% Similarity=0.397 Sum_probs=331.5
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ .+.|.+.+.|+++.+|+++|+.|++.||+++.+ ++|||.|+++.+.+.++|++++.|+++++.+..|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~- 87 (378)
T cd01157 9 QETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEANS- 87 (378)
T ss_pred HHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhh-
Confidence 3455 7888 789999999999999999999999999999988 99999999999999999999999998877665443
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
++...+..+|+++||++||+.+.+|+.++++++|||..|+|.....|++++++|||+|||+|.|+|++..||+++|++++
T Consensus 88 ~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~ 167 (378)
T cd01157 88 LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 167 (378)
T ss_pred hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEe
Confidence 45556677899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHH
Q 017183 159 TTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQ 231 (376)
Q Consensus 159 ~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~ 231 (376)
+++ +++++|+||.+.|||++.+.|.++|++++++++++|+||+||++++++.+ .++......+...|+.+++.
T Consensus 168 ~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~ 247 (378)
T cd01157 168 DPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAG 247 (378)
T ss_pred CCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHH
Confidence 532 35789999999999999999999999999999999999999999999865 56777777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHH
Q 017183 232 PIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARE 311 (376)
Q Consensus 232 ~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~ 311 (376)
++|+++++++.+++|+++|++||+|+.++|.+|+++++|..++++++++++.+++.++.+.......+++|.++++.+.+
T Consensus 248 ~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~ 327 (378)
T cd01157 248 AVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQ 327 (378)
T ss_pred HHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887654455678899999999999
Q ss_pred HHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 312 TVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 312 ~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+++.+++++||.||.++++++|+|||++...+++|++++++..|+++++++
T Consensus 328 ~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 328 LATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998864
No 8
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=4.3e-62 Score=465.76 Aligned_cols=360 Identities=30% Similarity=0.458 Sum_probs=335.6
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ ++.|.+.+.|+++.+|++.|+.|+++||+++.+ ++|||.|+++.+++.++++++++|+++++.+.+|..
T Consensus 10 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~ 89 (376)
T cd01156 10 RQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSN 89 (376)
T ss_pred HHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhh
Confidence 3455 8888 789999899999999999999999999999988 999999999999999999999999999988777776
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
++...+..+|+++|+++|++.+.+|+.++++++|||..|+|...+.+++++++|||+|||+|.|+|++..||+++|.+++
T Consensus 90 ~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 169 (376)
T cd01156 90 LCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKT 169 (376)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEe
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 159 TTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 159 ~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
++. .++.+|+||.+.|||++.++|+++|++++++++++|+||+||++++++.. .++......+...|+.+++.++|
T Consensus 170 ~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG 249 (376)
T cd01156 170 DPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIG 249 (376)
T ss_pred CCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHH
Confidence 643 45789999999999999999999999999999999999999999999875 56677778888999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
+++++++.+++|+++|++||+|+.++|.+|+++++|..++++++++++++++.++.+.......+.+|.++++.+.++++
T Consensus 250 ~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~ 329 (376)
T cd01156 250 IMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVAL 329 (376)
T ss_pred HHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765555677899999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
.+++++||.||.++++++|+|||++...+++|++++++..|++.+++
T Consensus 330 ~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 330 DAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999998764
No 9
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=7.1e-62 Score=463.60 Aligned_cols=356 Identities=26% Similarity=0.384 Sum_probs=330.6
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhH
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 79 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 79 (376)
+.+ +|++ ++.|++.+.|+++.+|++.|++|++.||+++.+ ++|||.|.++.+...+++++++.+++ ++.+.+|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~ 86 (372)
T cd01160 8 DVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDI 86 (372)
T ss_pred HHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 445 7888 788889999999999999999999999999988 99999999999999999999997654 6667777655
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+..++..+++++|++.|++.+.+|+.++++++|||..|+|...+.|+++++++||+|||+|.|+|++..||+++|.++++
T Consensus 87 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~ 166 (372)
T cd01160 87 VSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTG 166 (372)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeC
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 160 TT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 160 ~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
++ +++++|+||.+.|||++.++|+++|++++++++++|+||+||++++|+.+ .++......+...|+.+++.++|
T Consensus 167 ~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG 246 (372)
T cd01160 167 GEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALA 246 (372)
T ss_pred CCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 43 46889999999999999999999999999999999999999999999876 56777778888899999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
+++++++.+++|+++|++||+|+.++|.+|++++++..++++++++++.+++..+.+......++++|.++++.+.++++
T Consensus 247 ~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~ 326 (372)
T cd01160 247 AAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAY 326 (372)
T ss_pred HHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887765566788999999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHH
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 359 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~ 359 (376)
.+++++||.||.++++++|+|||+++..+++|++++++..|++++
T Consensus 327 ~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 327 ECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875
No 10
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=8.9e-62 Score=466.65 Aligned_cols=360 Identities=26% Similarity=0.431 Sum_probs=335.1
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHH--HHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhh
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFH--VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 77 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~ 77 (376)
+.+ +|++ ++.|.+.+.|+++.+|.+ +|++|++.||+++.+ ++|||.|+++.+.+.++++++++|+++++.+.+|.
T Consensus 35 ~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~ 114 (404)
T PLN02519 35 ESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 114 (404)
T ss_pred HHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhh
Confidence 455 8888 789999999999999876 699999999999988 99999999999999999999999999999888887
Q ss_pred hHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEE
Q 017183 78 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR 157 (376)
Q Consensus 78 ~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~ 157 (376)
..+...+..+|+++||++|++.+.+|+.++++++|||..|+|...+.+++++++|||+|||+|.|+|++..+|+++|.|+
T Consensus 115 ~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~ 194 (404)
T PLN02519 115 NLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAK 194 (404)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEE
Confidence 65666788999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred eCCC---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHH
Q 017183 158 NTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPI 233 (376)
Q Consensus 158 ~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~l 233 (376)
+++. .++++|+||.+.|||++.++|+++|+++++++++.|+||+||++++++.. .++......++..|+.+++.++
T Consensus 195 ~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~l 274 (404)
T PLN02519 195 TDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPL 274 (404)
T ss_pred eCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 8642 45889999999999999999999999999999999999999999999875 5666667778889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHH
Q 017183 234 GISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETV 313 (376)
Q Consensus 234 G~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~ 313 (376)
|+++++++.+++|+++|.+||+|+.++|.+|.++++|.+++++++++++++++.++.+.......+.+|.++++.+.+++
T Consensus 275 G~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~ 354 (404)
T PLN02519 275 GLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVA 354 (404)
T ss_pred HHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876555667889999999999999
Q ss_pred HHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 314 ALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 314 ~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
..+++++||.||.++++++|+|||++...+++|++.+++..|++.+++-
T Consensus 355 ~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 355 LQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999753
No 11
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-61 Score=460.74 Aligned_cols=352 Identities=22% Similarity=0.318 Sum_probs=322.3
Q ss_pred hHHH-Hhc-chhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHH
Q 017183 6 DFCI-FFL-NLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAML 82 (376)
Q Consensus 6 ~f~~-~~~-~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~ 82 (376)
+|++ .+. +.+.++|+.+.+|+++|++|+++||+++.+ ++|||.|.++.+.+.+++++++.|++. +.+ .| ..+..
T Consensus 18 ~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~-~~-~~~~~ 94 (381)
T PRK12341 18 ELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLI-TN-GQCIH 94 (381)
T ss_pred HHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHH-hh-hhhHH
Confidence 7887 554 577888999999999999999999999988 999999999999999999999999873 333 22 23555
Q ss_pred HHHhcCCHHHHHhhhHHh-hcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeCCC
Q 017183 83 TIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 161 (376)
Q Consensus 83 ~l~~~g~~~q~~~~l~~~-~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~~ 161 (376)
.+..+|+++||++|++.+ .+|+.++++++|||.+|+|...++++|++++|||+|||+|.|+||+..||+++|.|++++.
T Consensus 95 ~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~ 174 (381)
T PRK12341 95 SMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQP 174 (381)
T ss_pred HHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCC
Confidence 678899999999999998 5999889999999999999999999999999999999999999999999999999998642
Q ss_pred ----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHH
Q 017183 162 ----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGIS 236 (376)
Q Consensus 162 ----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~ 236 (376)
.++++|+||.+.|||++. +|+++|+++++++.++|+||+||+++++|.+ +++......++..|+.++++++|++
T Consensus 175 ~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a 253 (381)
T PRK12341 175 KDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFA 253 (381)
T ss_pred CCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357899999999999984 6999999999999999999999999999876 5666666778889999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHH
Q 017183 237 MGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALG 316 (376)
Q Consensus 237 ~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~ 316 (376)
+++++.+++|+++|++||+|+.++|.+|++++++.+++++++++++++++.++++......++++|.++++.+.++++.+
T Consensus 254 ~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~~ 333 (381)
T PRK12341 254 ECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDA 333 (381)
T ss_pred HHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888876656678999999999999999999
Q ss_pred HHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 317 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 317 ~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
++++||.||.++++++|+|||+++..+++|++++++..|++.+++
T Consensus 334 ~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 334 IQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999874
No 12
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.8e-61 Score=460.40 Aligned_cols=353 Identities=25% Similarity=0.315 Sum_probs=325.9
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhH
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 79 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 79 (376)
+.+ +|++ ++.|...+.|+.+.+|.++|+.|.+.||+++.+ ++|||.|+++.+.+.+++++++.|+++++....+. +
T Consensus 10 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~ 88 (372)
T TIGR03207 10 DTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLAS-L 88 (372)
T ss_pred HHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhh-H
Confidence 445 8888 789999999999999999999999999999988 99999999999999999999999999887654443 4
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+...+..+|+++|+++|++.+.+|+.++++++|||..|+|..++.|++++++|||+|||+|.|+|++..||+++|+++++
T Consensus 89 ~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~ 168 (372)
T TIGR03207 89 NGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTG 168 (372)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcC
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CC----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 160 TT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 160 ~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
++ .++.+|+||.+.|||++. .|+++|++++++++++|+||+||++++++.. .++......++..|+.++++++|
T Consensus 169 ~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G 247 (372)
T TIGR03207 169 SEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLA 247 (372)
T ss_pred CCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 32 357899999999999974 6999999999999999999999999999876 56777777889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
+++++++.+.+|+++|++||+|+.++|.+|+++++|.++++++|++++++++.++.+......++++|.++++.+.++++
T Consensus 248 ~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~ 327 (372)
T TIGR03207 248 VARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIH 327 (372)
T ss_pred HHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887755556688999999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHH
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 358 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~ 358 (376)
.++|++||.||.++ +++|+|||++...+++|++++++..|++.
T Consensus 328 ~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 328 QCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999 99999999999999999999999999874
No 13
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-61 Score=464.49 Aligned_cols=358 Identities=23% Similarity=0.355 Sum_probs=331.2
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ ++.|.+.+.|+.+.+|+++|+.|++.||+++.+ ++|||.|+++.+.+.++++++++|+++++.+..|..
T Consensus 45 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~ 124 (410)
T PTZ00461 45 RETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSM 124 (410)
T ss_pred HHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhh
Confidence 3455 7887 789999999999999999999999999999988 999999999999999999999999988877766754
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCC-EEEEeeeeecccCCCCCCEEEEEEE
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNSTFADVLVIFAR 157 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~~s~~~~ad~~~v~a~ 157 (376)
+....+..+++++||++|++.+.+|+.++++++|||..|+|.....|++++++| ||+|||+|.|+||+..||+++|.|+
T Consensus 125 ~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~ 204 (410)
T PTZ00461 125 LFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAK 204 (410)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEE
Confidence 455677889999999999999999999999999999999999999999999865 7999999999999999999999999
Q ss_pred eCCCCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHH
Q 017183 158 NTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGIS 236 (376)
Q Consensus 158 ~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~ 236 (376)
++ +++++|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.+ +++......+...|+.+++.++|++
T Consensus 205 ~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a 282 (410)
T PTZ00461 205 VD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIA 282 (410)
T ss_pred eC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 45889999999999999999999999999999999999999999999876 5666667778899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHH
Q 017183 237 MGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALG 316 (376)
Q Consensus 237 ~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~ 316 (376)
+++++.+.+|+++|++||+|++++|.+|++++++..++++++++++.+++.++.+.......+++|.++++.+.++++.+
T Consensus 283 ~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a 362 (410)
T PTZ00461 283 ERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSA 362 (410)
T ss_pred HHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887765445567889999999999999999
Q ss_pred HHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 317 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 317 ~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
++++||+||.++++++|+|||++...+.+|++++++..|++.+++
T Consensus 363 ~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~ 407 (410)
T PTZ00461 363 IQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLK 407 (410)
T ss_pred HHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998865
No 14
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.4e-60 Score=454.91 Aligned_cols=360 Identities=36% Similarity=0.537 Sum_probs=336.4
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ ++.+.+.+.|+++.+|++.|+.|+++||+++.+ ++|||.|.++.+.+.++++++++|+++++++.+|..
T Consensus 7 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~ 86 (373)
T cd01158 7 RKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNS 86 (373)
T ss_pred HHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHh
Confidence 3555 8887 788889999999999999999999999999988 999999999999999999999999999999888875
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
.+..++..+++++|++.|++.+.+|+.++++++|||.+|++...+++++++++|||+|||+|.|+|++..+|+++|.+++
T Consensus 87 ~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~ 166 (373)
T cd01158 87 LGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVT 166 (373)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence 66678889999999999999999999999999999999999888999999999999999999999999999999999997
Q ss_pred CCC---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 159 TTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 159 ~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
+++ .++++|+||.+.|||++.++|+++|++++++++++|+||+||++++++.. .++....+.+...|+.+++.++|
T Consensus 167 ~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG 246 (373)
T cd01158 167 DPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALG 246 (373)
T ss_pred CCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 543 45789999999999999999999999999999999999999999999876 45666677888899999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
+++++++.+++|+++|++||.|+.++|.+|++++++...+++++++++.++..++.+.+....++++|.++++.+.++++
T Consensus 247 ~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~ 326 (373)
T cd01158 247 IAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTT 326 (373)
T ss_pred HHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887765556788999999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
.+++++|+.||.++++++|+|||++...+++|++++++..+++++++
T Consensus 327 ~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 327 DAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999875
No 15
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-60 Score=454.88 Aligned_cols=356 Identities=23% Similarity=0.332 Sum_probs=324.5
Q ss_pred hHH-hHHH-Hh-cchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 3 QRV-DFCI-FF-LNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 3 ~~~-~f~~-~~-~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
+.+ +|++ ++ .+...+.|+.+.+|.+.|+.|++.||+++.+ ++|||.|+++.+++.++++++++|+|+++.+.+|.
T Consensus 14 ~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~- 92 (380)
T PRK03354 14 AGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPG- 92 (380)
T ss_pred HHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcc-
Confidence 344 7888 54 5666788888999999999999999999988 99999999999999999999999999887665543
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEe
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
....+..+++++|+++|++.+.+|+.+.++++|||+.|+|...+.|++++++|||+|||+|.|+|++.+||+++|+|++
T Consensus 93 -~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~ 171 (380)
T PRK03354 93 -GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARD 171 (380)
T ss_pred -cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence 2456788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 159 TTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 159 ~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
++. ..+++|+||.+.|||++. +|+++|+|+++++++.|+||+||+++++|.+ +++......++..|+.+++.++|
T Consensus 172 ~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G 250 (380)
T PRK03354 172 GASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYG 250 (380)
T ss_pred CCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 346789999999999986 6999999999999999999999999999876 45665666777889999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVA 314 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~ 314 (376)
+++++++.+++|+++|++||+||+++|.+|.++++|.++++++++++++++..++.+.......+++|.++++.+.++++
T Consensus 251 ~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~ 330 (380)
T PRK03354 251 TAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVD 330 (380)
T ss_pred HHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887655556788999999999999999
Q ss_pred HHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 315 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 315 ~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
.+++++||.||.++++++|+|||++...+++|++++++..|++.+++
T Consensus 331 ~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 331 SAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred HHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998863
No 16
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=6.7e-60 Score=454.56 Aligned_cols=354 Identities=27% Similarity=0.368 Sum_probs=325.3
Q ss_pred hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHH
Q 017183 6 DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 83 (376)
Q Consensus 6 ~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~ 83 (376)
+|++ ++.|. ++|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++|++++ |+++++.+.+|..++...
T Consensus 40 ~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~ 116 (409)
T cd01161 40 KFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKG 116 (409)
T ss_pred HHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHH
Confidence 6777 66654 46778889999999999999999988 9999999999999999999999 999988888887555556
Q ss_pred HHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe--CCEEEEeeeeecccCCCCCCEEEEEEEeCC-
Q 017183 84 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT- 160 (376)
Q Consensus 84 l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~- 160 (376)
+..+|+++|+++|++.+.+|+.++++++|||..|+|...+.++|+++ ++||+|||+|.|+||+..||+++|.|++++
T Consensus 117 l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~ 196 (409)
T cd01161 117 ILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVK 196 (409)
T ss_pred HHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCC
Confidence 78899999999999999999999999999999999999999999984 557999999999999999999999999752
Q ss_pred ---C---CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHH
Q 017183 161 ---T---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPI 233 (376)
Q Consensus 161 ---~---~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~l 233 (376)
+ +++++|+||.+.|||++.+.|+++|+++++++.+.|+||+||+++++|.. +++......++..|+.+++.++
T Consensus 197 ~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~l 276 (409)
T cd01161 197 DATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALI 276 (409)
T ss_pred CCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHH
Confidence 1 45789999999999999999999999999999999999999999999876 5667777888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ChhhhhhHHHHHHHHHHH
Q 017183 234 GISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM--TPGHASLGKSWITARARE 311 (376)
Q Consensus 234 G~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~K~~~~~~a~~ 311 (376)
|+++++++.+++|+++|++||+|+.++|.+|++++++.++++++|++++++++.++.+.. ....++++|.++++.+.+
T Consensus 277 G~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~~ 356 (409)
T cd01161 277 GTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWL 356 (409)
T ss_pred HHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888653 345689999999999999
Q ss_pred HHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 312 TVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 312 ~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+++.+++++||.||.++++++|+|||+++..+++|++.+++..|++.+|+.
T Consensus 357 v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 357 VVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999998754
No 17
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.1e-60 Score=450.48 Aligned_cols=351 Identities=21% Similarity=0.232 Sum_probs=313.2
Q ss_pred hhHH-hHHH-HhcchhHh--hhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHh
Q 017183 2 KQRV-DFCI-FFLNLLFQ--YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 76 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~--~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~ 76 (376)
++.+ +|++ ++.+...+ .|+.+.||+++|++|.+.||+++.+ ++|||.|++..+.+.++|++++.+.+... +. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~-~ 89 (378)
T TIGR03203 12 KESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LA-T 89 (378)
T ss_pred HHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HH-H
Confidence 3455 7777 55554432 4677889999999999999999988 99999999999999999999998754432 22 2
Q ss_pred hhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEE
Q 017183 77 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 156 (376)
Q Consensus 77 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a 156 (376)
..++..++..+|+++||++||+.+.+|+.++++++|||+.|||...+.|++++++|+|+|||+|.|||++..||+++|+|
T Consensus 90 ~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~a 169 (378)
T TIGR03203 90 VVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTA 169 (378)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEE
Confidence 22445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC----CCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHH
Q 017183 157 RNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQ 231 (376)
Q Consensus 157 ~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~ 231 (376)
++++ .+++++|+||.+.|||++.+.+.+.|+ ++++++||||+||+++++|.+ +++......++..|+.+++.
T Consensus 170 r~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~ 246 (378)
T TIGR03203 170 RTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAE 246 (378)
T ss_pred ecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9853 256899999999999999876666665 468999999999999999876 66788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhhhhhHHHHHHHHH
Q 017183 232 PIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHASLGKSWITARA 309 (376)
Q Consensus 232 ~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~K~~~~~~a 309 (376)
++|+++++++.+++|+++|++||+||++||.||+++++|.++++++|++++.++...+.+. +....++++|.++++.+
T Consensus 247 ~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a 326 (378)
T TIGR03203 247 AVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSL 326 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776532 33456889999999999
Q ss_pred HHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHH
Q 017183 310 RETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 357 (376)
Q Consensus 310 ~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~ 357 (376)
.++++.++|+|||.||+++++++++|||++.+.+.+|++.+++..++.
T Consensus 327 ~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 327 KFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6.3e-59 Score=445.89 Aligned_cols=359 Identities=18% Similarity=0.206 Sum_probs=316.8
Q ss_pred hhHH-hHHH-HhcchhHhhhhhC-------CCC----HHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKA-------EFP----FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 67 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~-------~~~----~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~ 67 (376)
++.+ +|++ ++.|...+.|+.+ .+| +++|+.++++||+++.+ ++|||.|+++.+++.++|+++++|.
T Consensus 7 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~ 86 (394)
T cd01155 7 RARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFF 86 (394)
T ss_pred HHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcc
Confidence 3455 9998 8998887877531 134 58888899999999988 9999999999999999999999863
Q ss_pred c-hhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCC-CCCCcCCCeeEEEEeCCEEEEeeeeecccC
Q 017183 68 S-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKRWIGN 145 (376)
Q Consensus 68 s-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~ 145 (376)
. .++....+...+..++..+|+++|+++|++.+.+|+.++++++|||. .|+|...+.|++++++|||+|||+|.|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~ 166 (394)
T cd01155 87 APEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSG 166 (394)
T ss_pred cchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcC
Confidence 2 22222222212345788999999999999999999999999999997 579988899999999999999999999999
Q ss_pred CCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeeeccccccccccc--ccceeEEEcceecCCCCCcCCC-CcHH
Q 017183 146 STF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV-NSFQ 215 (376)
Q Consensus 146 ~~~--ad~~~v~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~~~--~~~~~v~f~~v~Vp~~~~lg~~-~~~~ 215 (376)
+.+ +|+++|.+++++. +++.+|+||.+.|||++.++|+++|+++ +++++|.|+||+||++++++.. +++.
T Consensus 167 ~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~ 246 (394)
T cd01155 167 AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFE 246 (394)
T ss_pred CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHH
Confidence 955 7899999997532 3588999999999999999999999997 6789999999999999999865 5667
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 017183 216 DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-- 293 (376)
Q Consensus 216 ~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~-- 293 (376)
.....+...|+..++.++|+++++++.+++|+++|++||+|+.++|.+|+++++|.+.++++|++++.+++.++.+..
T Consensus 247 ~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~ 326 (394)
T cd01155 247 IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKA 326 (394)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 777888889999999999999999999999999999999999999999999999999999999999999999887432
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHh
Q 017183 294 TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 360 (376)
Q Consensus 294 ~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 360 (376)
....++++|.++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++..|++.++
T Consensus 327 ~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 327 ARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 3466899999999999999999999999999999999999999999999999999999999999884
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.9e-58 Score=459.98 Aligned_cols=334 Identities=25% Similarity=0.310 Sum_probs=306.6
Q ss_pred hCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHH-HHHHhcCCHHHHHhhhH
Q 017183 21 KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLP 98 (376)
Q Consensus 21 ~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~-~~l~~~g~~~q~~~~l~ 98 (376)
.+.+|+++|+.|++.||+++.+ ++|||.|++..+.+.++|++++.|++++..+.+|.+++. .++..+|+++||++|||
T Consensus 107 ~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp 186 (777)
T PRK09463 107 LADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLP 186 (777)
T ss_pred ccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4789999999999999999988 999999999999999999999999988877777765553 47889999999999999
Q ss_pred HhhcCcceeEEEeeCCCCCCCcCCCeeE-----EEEeCC---EEEEeeeeecccCCCCCCEEEEEEEeCC---------C
Q 017183 99 SLAQLNTIACWALTEPAYGSDASALNTT-----ATKVEG---GWILEGQKRWIGNSTFADVLVIFARNTT---------T 161 (376)
Q Consensus 99 ~~~~g~~~~~~a~te~~~g~~~~~~~~~-----a~~~~~---g~~l~G~k~~~s~~~~ad~~~v~a~~~~---------~ 161 (376)
.+++|+.++|+++|||+.|||+....|+ ++++++ ||+|||+|.|+|+++.||+++|++++.+ .
T Consensus 187 ~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~ 266 (777)
T PRK09463 187 RLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKED 266 (777)
T ss_pred HHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCC
Confidence 9999999999999999999999887754 445666 6999999999999999999999998622 2
Q ss_pred CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCC----CCcHHHHHHHhhHhH-HHHHHHHHHHH
Q 017183 162 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVLAVSR-VMVAWQPIGIS 236 (376)
Q Consensus 162 ~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----~~~~~~~~~~~~~~r-l~~aa~~lG~~ 236 (376)
.++++||||.+.|||++.+.|.++|++ ..++.++|+||+||.+++||. .+++......++.+| +.+++.++|++
T Consensus 267 ~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~a 345 (777)
T PRK09463 267 LGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGA 345 (777)
T ss_pred CceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 668999999999999999986 367888899999999 89999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHH
Q 017183 237 MGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALG 316 (376)
Q Consensus 237 ~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~ 316 (376)
+++++.+++|+++|++||+||++||.||++|++|...+++++++.+.+++.+|.+......++++|+++++.+.++++.+
T Consensus 346 r~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~A 425 (777)
T PRK09463 346 KLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDA 425 (777)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888876666678999999999999999999
Q ss_pred HHHhCCccccCc--CcHHHHhhhhcCcccccchHHHHHHHH
Q 017183 317 RELLGGNGILSD--FLVAKAFCDIEPIYTYEGTYDINTLVT 355 (376)
Q Consensus 317 ~~~~Gg~g~~~~--~~~~r~~rd~~~~~~~~g~~~~~~~~i 355 (376)
+|+|||.||+++ ++++|+|||++...+++|++.+++..|
T Consensus 426 mQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 426 MDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999987 899999999999999999999998876
No 20
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-59 Score=399.43 Aligned_cols=365 Identities=41% Similarity=0.642 Sum_probs=351.2
Q ss_pred hHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcccccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHH
Q 017183 3 QRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA 80 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~ 80 (376)
+-+ ++|+ ++.|+-.++.+...|+++++.++...|+++..++.||-.|.|......+.+|+.+.|.+....+.+|.+++
T Consensus 64 ~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~ 143 (432)
T KOG0138|consen 64 DTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLV 143 (432)
T ss_pred HHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhh
Confidence 344 7888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCE--EEEeeeeecccCCCCCCEEEEEEEe
Q 017183 81 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARN 158 (376)
Q Consensus 81 ~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~~s~~~~ad~~~v~a~~ 158 (376)
+.+|..+|+++||++|+|.+++|++++||++|||.+|||+..++|+|++++.+ |.|||.|.|++|++.||+++|.||.
T Consensus 144 m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~ 223 (432)
T KOG0138|consen 144 MGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARC 223 (432)
T ss_pred hhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred CCCCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCCCcHHHHHHHhhHhHHHHHHHHHHHHHH
Q 017183 159 TTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMG 238 (376)
Q Consensus 159 ~~~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~~~~~~~~~~~~~rl~~aa~~lG~~~~ 238 (376)
.-++.+.-|||+++.+|.+.-....++++|.+.++.|-+|||+||+++++....++......++..|+.+++..+|+...
T Consensus 224 ~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~ 303 (432)
T KOG0138|consen 224 ETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEF 303 (432)
T ss_pred ccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHH
Confidence 86688999999999999999999999999999999999999999999999776777777788899999999999999999
Q ss_pred HHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHH
Q 017183 239 VYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRE 318 (376)
Q Consensus 239 ~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~~~ 318 (376)
+++.+.+|+.+|++||+|++.+|.+|.++++|..++...-.++++..+..|.+......+++.|.+.+..++++++.+.+
T Consensus 304 c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~Rd 383 (432)
T KOG0138|consen 304 CLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARD 383 (432)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcccCCCC
Q 017183 319 LLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKP 367 (376)
Q Consensus 319 ~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~~~~ 367 (376)
+.||-|+.+++.+.|++-|+.....++|+.|++...++|.+.|+..+.|
T Consensus 384 mLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGia~F~~ 432 (432)
T KOG0138|consen 384 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIAAFKP 432 (432)
T ss_pred HhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999988765
No 21
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=8e-57 Score=432.72 Aligned_cols=353 Identities=22% Similarity=0.273 Sum_probs=316.9
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCC--------CC---HHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCC
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAE--------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 67 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~ 67 (376)
|+.+ +|++ .+.|.+.++|+++. || .++|++|+++||+++.+ ++|||.|.++.+...+.++++++|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 5667 8999 89999999988775 88 67899999999999988 9999999999999999999999999
Q ss_pred chhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe-CCEEEEeeeeecccCC
Q 017183 68 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 146 (376)
Q Consensus 68 s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~s~~ 146 (376)
++++.+.+|. +...+..+++++|++.|++.+.+|+.++++++|||+.|||+..+.|+++++ +|||+|||+|.|+|++
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9988776654 345678889999999999999999999999999999999999999999998 5679999999999999
Q ss_pred CCC----CEEEEEEEeCCC----CCeEEEEEeCCC-----CCeeecccccccccccccceeEEEcceecCCCCCcCCC-C
Q 017183 147 TFA----DVLVIFARNTTT----NQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 212 (376)
Q Consensus 147 ~~a----d~~~v~a~~~~~----~~~~~flV~~~~-----~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~ 212 (376)
.++ ++++|++++++. +++.+|+||.+. |||++.+.|+++|+++++++++.|+||+|| +++.+ .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 886 577899987532 368899999987 899999999999999999999999999999 67765 5
Q ss_pred cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--------cccchHHHHHHHHHHHHHHHHHHHHHHH
Q 017183 213 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP--------LAAFQINQQKLVQMLGNIQAMILVGWRL 284 (376)
Q Consensus 213 ~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~--------i~~~~~v~~~la~~~~~~~a~~~~~~~~ 284 (376)
++......+..+|+.++++++|+++++++.+++|+++|++||+| +.++|.+|.+|++|.+++++++++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888899999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred HHHHHcCCCC--------------hhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHH
Q 017183 285 CKLYEKGAMT--------------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDI 350 (376)
Q Consensus 285 ~~~~~~~~~~--------------~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~ 350 (376)
++.++..... ...++++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++
T Consensus 317 a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~ 396 (407)
T cd01153 317 ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGI 396 (407)
T ss_pred HHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHH
Confidence 9988765311 23356899999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHH
Q 017183 351 NTL-VTGREV 359 (376)
Q Consensus 351 ~~~-~i~~~~ 359 (376)
++. .+++++
T Consensus 397 ~~~~~~~~~~ 406 (407)
T cd01153 397 QALDLIGRKI 406 (407)
T ss_pred HHHHHhhccc
Confidence 876 556543
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-57 Score=450.60 Aligned_cols=334 Identities=25% Similarity=0.313 Sum_probs=300.0
Q ss_pred hhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHH-HHHHHhcCCHHHHHh
Q 017183 18 YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQK 95 (376)
Q Consensus 18 ~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~-~~~l~~~g~~~q~~~ 95 (376)
.++.+.+|+++|+.|++.||+++.+ ++|||.|++..+.+.+++++++.|.+++..+.+|.+++ ..++..+|+++||++
T Consensus 103 ~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~ 182 (774)
T PRK13026 103 VQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDY 182 (774)
T ss_pred hhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 3457899999999999999999988 99999999999999999999999988887666776554 357889999999999
Q ss_pred hhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEE-----EeCC---EEEEeeeeecccCCCCCCEEEEEEEeCC-------
Q 017183 96 YLPSLAQLNTIACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARNTT------- 160 (376)
Q Consensus 96 ~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~-----~~~~---g~~l~G~k~~~s~~~~ad~~~v~a~~~~------- 160 (376)
|||.+++|+.++|+++|||++|||.....|+++ ++++ ||+|||+|.|+|+++.||+++|.+++.+
T Consensus 183 yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 183 WLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred hhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccC
Confidence 999999999999999999999999988886654 5676 6999999999999999999988776422
Q ss_pred --CCCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC----CcHHHHHHHhhHhH-HHHHHHHH
Q 017183 161 --TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV----NSFQDTSKVLAVSR-VMVAWQPI 233 (376)
Q Consensus 161 --~~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~----~~~~~~~~~~~~~r-l~~aa~~l 233 (376)
..++++|+||.+.|||++.+.++.+|++.. +++++||||+||.+++||.+ +++......++.+| +.+++.++
T Consensus 263 ~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~ 341 (774)
T PRK13026 263 KKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGT 341 (774)
T ss_pred CCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 146899999999999999999999999974 58999999999999999863 57888899999999 89999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHH
Q 017183 234 GISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLG---NIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARAR 310 (376)
Q Consensus 234 G~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~ 310 (376)
|+++.+++.+.+|+++|++||+||++||.||+++++|.+ .++++|.+++.++ |.+......++++|+++++.+.
T Consensus 342 G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~aA~AK~~atE~a~ 418 (774)
T PRK13026 342 ASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVTAIAKYHMTELAR 418 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6889998888764 5555445678999999999999
Q ss_pred HHHHHHHHHhCCccccCc--CcHHHHhhhhcCcccccchHHHHHHHH
Q 017183 311 ETVALGRELLGGNGILSD--FLVAKAFCDIEPIYTYEGTYDINTLVT 355 (376)
Q Consensus 311 ~~~~~~~~~~Gg~g~~~~--~~~~r~~rd~~~~~~~~g~~~~~~~~i 355 (376)
++++.++|++||.||+++ ++++|+|||++...+.+|++.+++..+
T Consensus 419 ~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 419 DVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred HHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 999999999999999997 899999999999999999999888743
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.5e-56 Score=427.34 Aligned_cols=360 Identities=33% Similarity=0.498 Sum_probs=328.3
Q ss_pred hHHH-HhcchhHhhhh---hCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh-H
Q 017183 6 DFCI-FFLNLLFQYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS-L 79 (376)
Q Consensus 6 ~f~~-~~~~~~~~~d~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~-~ 79 (376)
+|.+ .+.+...+.++ ...+|.+.++.+++.|++++.+ ++|||.+.+..+...+.+++++.|++.++.+.+|.. .
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~ 97 (393)
T COG1960 18 EFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGL 97 (393)
T ss_pred HHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhcccc
Confidence 7777 66777777776 6888899999999999999988 999999999999999999999999988776665542 1
Q ss_pred --HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCe-eEEEEeCCEEEEeeeeecccCCCCCCEEEEEE
Q 017183 80 --AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRWIGNSTFADVLVIFA 156 (376)
Q Consensus 80 --~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~-~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a 156 (376)
....+..+|+++|+++|++.+..|+.++|+++|||.+|||..... |++++++++|+|||+|.|+|++..||+++|+|
T Consensus 98 ~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~A 177 (393)
T COG1960 98 GALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLA 177 (393)
T ss_pred ccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEE
Confidence 223567899999999999999999999999999999999999877 77777666699999999999999999999999
Q ss_pred EeCCC----CCeEEEEEeCC-CCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHH
Q 017183 157 RNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAW 230 (376)
Q Consensus 157 ~~~~~----~~~~~flV~~~-~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa 230 (376)
++++. +++++|+||.+ .|||++.+.|.+.|+++++++++.|+||+||.++++|+. .++......++.+|+.+++
T Consensus 178 r~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa 257 (393)
T COG1960 178 RTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAA 257 (393)
T ss_pred EcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHH
Confidence 99753 57999999999 599999998864499999999999999999999999865 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHH
Q 017183 231 QPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARAR 310 (376)
Q Consensus 231 ~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~ 310 (376)
.++|+++++++.+.+|+++|++||+|++++|.+|.+++++.+++++++.++++++...+.+......++++|.++++.+.
T Consensus 258 ~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~ 337 (393)
T COG1960 258 QALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAAL 337 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888876444678999999999999
Q ss_pred HHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcccCC
Q 017183 311 ETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 365 (376)
Q Consensus 311 ~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~~~ 365 (376)
++++.++|++||.||..+++++|+|||++...+++|++.+++..+++.+++.+..
T Consensus 338 ~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~~ 392 (393)
T COG1960 338 EVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPAG 392 (393)
T ss_pred HHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999988653
No 24
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.1e-55 Score=420.78 Aligned_cols=354 Identities=23% Similarity=0.261 Sum_probs=307.5
Q ss_pred hhHH-hHHH-HhcchhHhhh-hhCCCCH----HHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHH
Q 017183 2 KQRV-DFCI-FFLNLLFQYW-EKAEFPF----HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 73 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~ 73 (376)
++.+ +|++ ++.|...+.+ +...+|. ++|+++.+.||+++.+ ++|||.|+++.+.+.++|++++++.+.++.+
T Consensus 12 ~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~ 91 (395)
T TIGR03204 12 RDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAF 91 (395)
T ss_pred HHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchh
Confidence 3455 8887 6776665533 3334664 8999999999999988 9999999999999999999999998877544
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEE
Q 017183 74 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 153 (376)
Q Consensus 74 ~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~ 153 (376)
.++ ++...+..+|+++||++|++.+.+|+.++++++|||+.|||.....|++++++|||+|||+|.|++++..||+++
T Consensus 92 ~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~l 169 (395)
T TIGR03204 92 GVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIF 169 (395)
T ss_pred HhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEE
Confidence 433 334467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHH
Q 017183 154 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 228 (376)
Q Consensus 154 v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~ 228 (376)
|.+++++. .++++|+||.+.|||++.+.+...| +.++++++|+||+||+++++|.. .++......++..|+..
T Consensus 170 v~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~ 247 (395)
T TIGR03204 170 CLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGI 247 (395)
T ss_pred EEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99997532 4589999999999999977665555 67899999999999999999875 56777788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CChhhhhhHHHHHH
Q 017183 229 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE-KGA-MTPGHASLGKSWIT 306 (376)
Q Consensus 229 aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~K~~~~ 306 (376)
++ +|+++++++.+++|+++|++||+||+++|.+|++|++|.+.++++|.++|+++.... .+. .....++++|.+++
T Consensus 248 aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~ 325 (395)
T TIGR03204 248 AR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGS 325 (395)
T ss_pred HH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 75 899999999999999999999999999999999999999999999999999975432 222 22356899999999
Q ss_pred HHHHHHHHHHHHH----------hCCccccCc----CcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 307 ARARETVALGREL----------LGGNGILSD----FLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 307 ~~a~~~~~~~~~~----------~Gg~g~~~~----~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
+.+.++++.++|+ |||.||.++ ++++++|||.+...+++|++++++..|++++++
T Consensus 326 ~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 326 EIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 9999999999985 788899865 469999999999999999999999999999876
No 25
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=4.7e-56 Score=424.07 Aligned_cols=352 Identities=16% Similarity=0.183 Sum_probs=311.6
Q ss_pred hHHHHhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHH
Q 017183 6 DFCIFFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTI 84 (376)
Q Consensus 6 ~f~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l 84 (376)
++++.+++++.++|+++.+|++.|+.|++.||+++.+ ++|||.|+++.++..++++++++|+++++.+.+|.. +...+
T Consensus 5 ~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~~~l 83 (377)
T cd01163 5 PLAARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FVEAL 83 (377)
T ss_pred HHHHHHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHH
Confidence 7788999999999999999999999999999999988 999999999999999999999999999998888764 45678
Q ss_pred HhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeCCCCCe
Q 017183 85 ALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQI 164 (376)
Q Consensus 85 ~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~~~~~ 164 (376)
..+|+++|++.|++.+.+|++++ .+++||+.++ +....+++++++|||+|||+|.|+|++..||+++|.+++++ +++
T Consensus 84 ~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~-~~~ 160 (377)
T cd01163 84 LLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE-GKL 160 (377)
T ss_pred HhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-CcE
Confidence 88999999999999999999664 5999998775 66677778888899999999999999999999999999764 557
Q ss_pred EEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCCC-cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 017183 165 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGVYDMC 243 (376)
Q Consensus 165 ~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~ 243 (376)
.+|+||.+.|||++.++|+++|++++++++++|+||+||++++++... ++. ....+..+++.+++.++|+++++++.+
T Consensus 161 ~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~ 239 (377)
T cd01163 161 VFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDA 239 (377)
T ss_pred EEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999998763 332 233445678899999999999999999
Q ss_pred HHHHHhhc-ccCc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ChhhhhhHHHHHH
Q 017183 244 HRYLKERK-QFGA----PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM------------TPGHASLGKSWIT 306 (376)
Q Consensus 244 ~~~~~~r~-~~g~----~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~K~~~~ 306 (376)
++|+++|+ +|+. ++.++|.+|+++++|..+++++|++++.+++.++.+.. ....++++|.+++
T Consensus 240 ~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~ 319 (377)
T cd01163 240 VAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVT 319 (377)
T ss_pred HHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999995 6665 57899999999999999999999999999998876411 1235678999999
Q ss_pred HHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhccc
Q 017183 307 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIA 363 (376)
Q Consensus 307 ~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 363 (376)
+.+.++++.+++++||.||.++++++|+|||++...+|.... .....++..+++..
T Consensus 320 ~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~~~ 375 (377)
T cd01163 320 RLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALNGE 375 (377)
T ss_pred HHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcCCC
Confidence 999999999999999999999999999999999999888874 55666777776543
No 26
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.6e-55 Score=420.50 Aligned_cols=351 Identities=26% Similarity=0.335 Sum_probs=308.9
Q ss_pred hHH-hHHH-HhcchhHhh-----hhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHH-H
Q 017183 3 QRV-DFCI-FFLNLLFQY-----WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTF-I 73 (376)
Q Consensus 3 ~~~-~f~~-~~~~~~~~~-----d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~-~ 73 (376)
+.+ +|++ ++.|..... ++.+.+|++.++.|++.||+++.+ ++|||.|.++.+++.+++++++.|+++++. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~ 87 (380)
T cd01152 8 AEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQI 87 (380)
T ss_pred HHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchh
Confidence 444 7777 666655432 445678889999999999999988 999999999999999999999999998875 4
Q ss_pred HHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEE
Q 017183 74 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 153 (376)
Q Consensus 74 ~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~ 153 (376)
.+| .+...+..+|+++|+++|++.+.+|+.+.++++|||..|+|...+.++++++++||+|||+|.|+|++..+|+++
T Consensus 88 ~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~l 165 (380)
T cd01152 88 GID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAW 165 (380)
T ss_pred hHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEE
Confidence 433 344578889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHH
Q 017183 154 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 228 (376)
Q Consensus 154 v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~ 228 (376)
|+++++++ +++.+|+||.+.|||++.+.|+.+| ++++++++|+||+||++++++.+ .++......+...|+..
T Consensus 166 v~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 243 (380)
T cd01152 166 LLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSI 243 (380)
T ss_pred EEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhccccc
Confidence 99997632 3688999999999999999998887 67899999999999999999876 56677777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHH
Q 017183 229 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 308 (376)
Q Consensus 229 aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~ 308 (376)
++.+.|++ +.+++|+++|.+||+|+.++|.+|+++++|.+++++++++++.+++.++.+......++++|.++++.
T Consensus 244 ~~~~~~~~----~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~ 319 (380)
T cd01152 244 GGSAATFF----ELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSEL 319 (380)
T ss_pred chhhhHHH----HHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 65555554 55667888888999999999999999999999999999999999999988765556688999999999
Q ss_pred HHHHHHHHHHHhCCccccCc--------CcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 309 ARETVALGRELLGGNGILSD--------FLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 309 a~~~~~~~~~~~Gg~g~~~~--------~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
+.++++.+++++||.||.++ ++++|++||++...+++|++++++..|++.++|
T Consensus 320 a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 320 AQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 99999999999999999988 689999999999999999999999999999875
No 27
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-54 Score=431.33 Aligned_cols=359 Identities=19% Similarity=0.211 Sum_probs=314.2
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCC---------C---HHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccC
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEF---------P---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 66 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~ 66 (376)
++.+ +|++ ++.|...+.|+++.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|.++..+
T Consensus 64 l~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~ 143 (622)
T PTZ00456 64 LEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATAN 143 (622)
T ss_pred HHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhc
Confidence 3455 8999 799999999987654 5 58999999999999988 999999999875555555577788
Q ss_pred CchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCE-EEEeeeeecccC
Q 017183 67 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGN 145 (376)
Q Consensus 67 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g-~~l~G~k~~~s~ 145 (376)
+++++....+. .+...|..+|+++||++|||.+.+|++++++++|||.+|||+....|+|++++|| |+|||+|.|||+
T Consensus 144 ~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~ 222 (622)
T PTZ00456 144 WGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISA 222 (622)
T ss_pred hHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecC
Confidence 87765544433 2456789999999999999999999999999999999999999999999999885 999999999999
Q ss_pred CCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeeecccccccccccccceeEEEcceecCCCCC
Q 017183 146 STFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 207 (376)
Q Consensus 146 ~~~a----d~~~v~a~~~~----~~~~~~flV~~~~----------~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~ 207 (376)
+.++ ++++|+||+++ .+++++|+||++. +||++...++++|+++++++.+.|+| |.+++
T Consensus 223 g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~l 299 (622)
T PTZ00456 223 GDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGYL 299 (622)
T ss_pred CchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHhh
Confidence 9863 57899999864 2679999999864 47888888899999999999999999 46789
Q ss_pred cCCC-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------CcccccchHHHHHHHHHHHHH
Q 017183 208 LPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF------------GAPLAAFQINQQKLVQMLGNI 274 (376)
Q Consensus 208 lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~------------g~~i~~~~~v~~~la~~~~~~ 274 (376)
||++ +++......++..|+.+++.++|+++++++.+++|+++|++| ++||+++|.||.+|++|.+.+
T Consensus 300 lG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~ 379 (622)
T PTZ00456 300 IGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVA 379 (622)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHH
Confidence 9887 577888889999999999999999999999999999999984 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC--C-----------hhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCc
Q 017183 275 QAMILVGWRLCKLYEKGAM--T-----------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 341 (376)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~--~-----------~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~ 341 (376)
+++|++++.++..+|.+.. + ...++++|.++++.+.++++.++|++||+||.++++++++|||++..
T Consensus 380 eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~ 459 (622)
T PTZ00456 380 EGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIG 459 (622)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcc
Confidence 9999999999998886421 1 23477999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHH-HHHHHHHhcccC
Q 017183 342 YTYEGTYDINT-LVTGREVTGIAS 364 (376)
Q Consensus 342 ~~~~g~~~~~~-~~i~~~~l~~~~ 364 (376)
.+++|++.++. ..|+|++++...
T Consensus 460 ~i~eGt~~iq~~dli~rkllg~~~ 483 (622)
T PTZ00456 460 TLYEGTTGIQALDFIGRKVLSLKG 483 (622)
T ss_pred cccCChHHHHHHHHHHHHhhCCCC
Confidence 99999999997 588999986543
No 28
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-56 Score=414.82 Aligned_cols=349 Identities=26% Similarity=0.363 Sum_probs=329.0
Q ss_pred chhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHH
Q 017183 13 NLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 91 (376)
Q Consensus 13 ~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~ 91 (376)
.....+|+.+.++++.++.|+++|++++.+ ++|+|.|+.+.+.+++.|.++.+|.++.+.+..|..++.-.|..||+++
T Consensus 99 ~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~ 178 (634)
T KOG0137|consen 99 NDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDE 178 (634)
T ss_pred chhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHH
Confidence 345778899999999999999999999999 9999999999999999999999999999988888877878899999999
Q ss_pred HHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCC--EEEEeeeeecccCCCCCCEEEEEEEeCCC-------C
Q 017183 92 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEGQKRWIGNSTFADVLVIFARNTTT-------N 162 (376)
Q Consensus 92 q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~--g~~l~G~k~~~s~~~~ad~~~v~a~~~~~-------~ 162 (376)
||++|||.+.+|+.+++||+|||.+|||.....++|+..+| .|+|||.|.|++|+..||+++|+|+++.+ +
T Consensus 179 Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~ 258 (634)
T KOG0137|consen 179 QKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKR 258 (634)
T ss_pred HHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccC
Confidence 99999999999999999999999999999999999998664 49999999999999999999999999721 6
Q ss_pred CeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 017183 163 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYD 241 (376)
Q Consensus 163 ~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~ 241 (376)
++++|||+++..||+-.+...++|.|++.++.|+|++|.||.+++||.+ +|.+..+.+++.+|+..++..+|.|+++++
T Consensus 259 k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~ 338 (634)
T KOG0137|consen 259 KITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIE 338 (634)
T ss_pred ceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 017183 242 MCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG--AMTPGHASLGKSWITARARETVALGREL 319 (376)
Q Consensus 242 ~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~K~~~~~~a~~~~~~~~~~ 319 (376)
++..|+..|.+||+++.++..+|.++++|...+++.++++|..+..+|+. .+...++++.|+++.+.+..++.+++|+
T Consensus 339 ~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi 418 (634)
T KOG0137|consen 339 EAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQI 418 (634)
T ss_pred HHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhhe
Confidence 99999999999999999999999999999999999999999999988883 3445678999999999999999999999
Q ss_pred hCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 320 LGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 320 ~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
+||+||+.+.+++|.+||++.+.+++|++++++..|+..-+.
T Consensus 419 ~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 419 VGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred eccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776543
No 29
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.4e-54 Score=434.50 Aligned_cols=353 Identities=22% Similarity=0.303 Sum_probs=314.8
Q ss_pred hHH-hHHH-H--h-cchhHhhhhhCCCC-HHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHH
Q 017183 3 QRV-DFCI-F--F-LNLLFQYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 75 (376)
Q Consensus 3 ~~~-~f~~-~--~-~~~~~~~d~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~ 75 (376)
+.+ +|++ + + .|.....++.+.++ .++++.+++.|++++.+ ++ ++.++..+.|++++.|++++..+.+
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~v 143 (686)
T PLN02636 70 EKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGV 143 (686)
T ss_pred HHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHh
Confidence 344 6766 4 3 56667777778888 88999999999999876 54 7899999999999999998888888
Q ss_pred hhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe--CCEEEEe-----eeeecccCCCC
Q 017183 76 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF 148 (376)
Q Consensus 76 ~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~~ 148 (376)
|.+++...|..+|+++|+++||+.+.+|+.++|+|+|||++|||+.+++|+|+++ +|+|+|| |.|+|++|+..
T Consensus 144 h~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~ 223 (686)
T PLN02636 144 QYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAV 223 (686)
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcc
Confidence 8877888999999999999999999999999999999999999999999999998 6789999 99999999965
Q ss_pred -CCEEEEEEEeCC---------CCCeEEEEEeCC-------CCCeeecccccccccccccceeEEEcceecCCCCCcCCC
Q 017183 149 -ADVLVIFARNTT---------TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 211 (376)
Q Consensus 149 -ad~~~v~a~~~~---------~~~~~~flV~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~ 211 (376)
||+++|+|++.. ..++++|+||.+ .|||++.+...++|+++.+++.+.||||+||.+++|++.
T Consensus 224 ~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~ 303 (686)
T PLN02636 224 HGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRF 303 (686)
T ss_pred cCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhcccc
Confidence 999999999851 247999999987 599999999999999999999999999999999999531
Q ss_pred -----------------CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc------cccchHHHHHHH
Q 017183 212 -----------------NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP------LAAFQINQQKLV 268 (376)
Q Consensus 212 -----------------~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~------i~~~~~v~~~la 268 (376)
+++......+..+|+.+++.++|+++++++.+++|++.|++||+| |.+||.+|.+|+
T Consensus 304 g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La 383 (686)
T PLN02636 304 GDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLM 383 (686)
T ss_pred ccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHH
Confidence 355677788899999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHcCC-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhc
Q 017183 269 QMLGNIQAMI----LVGWRLCKLYEKGA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 339 (376)
Q Consensus 269 ~~~~~~~a~~----~~~~~~~~~~~~~~-----~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~ 339 (376)
+|.+.+++++ .+++.+++..+.++ +.+..++++|.++++.+.++++.|+|+|||+||..+++++++|||++
T Consensus 384 ~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~ 463 (686)
T PLN02636 384 PMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHD 463 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhh
Confidence 9999999965 55555555544433 24567899999999999999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHhc
Q 017183 340 PIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 340 ~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
...+++|++.+++.++++.+++
T Consensus 464 ~~~t~EG~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 464 IFQTFEGDNTVLLQQVAADLLK 485 (686)
T ss_pred hheeecChHHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 30
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=4.9e-54 Score=444.40 Aligned_cols=361 Identities=17% Similarity=0.208 Sum_probs=316.3
Q ss_pred hhHH-hHHH-HhcchhHhhhhhC-------CCC-HHHHHHHH-hcCCccCcc-cc------------------------c
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKA-------EFP-FHVIPKLG-ALRVAGGTI-KG------------------------Y 45 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~------------------------~ 45 (376)
++.+ +|++ ++.|...++++.. .+| .+.|+++. +.||+++.+ ++ |
T Consensus 410 ~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (822)
T PLN02876 410 RKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQL 489 (822)
T ss_pred HHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccccC
Confidence 4555 8888 7787776665432 367 57888875 999999988 64 9
Q ss_pred CCCCCCHHHHHHHHHHHHccCCchhHH-HHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCC-CCCCcCCC
Q 017183 46 GCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASAL 123 (376)
Q Consensus 46 GG~g~~~~~~~~~~~~la~~~~s~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~-~g~~~~~~ 123 (376)
||.|++..+.+.++|++++++.+.... ...+....+..+..+|+++||++|++.+.+|+.++++++|||+ +|||..++
T Consensus 490 GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~ 569 (822)
T PLN02876 490 LGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNI 569 (822)
T ss_pred CCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccc
Confidence 999999999999999999986442211 1122222345688899999999999999999999999999997 67999999
Q ss_pred eeEEEEeCCEEEEeeeeecccCC--CCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeeecccccccccccc--cceeE
Q 017183 124 NTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIV--QNGDI 195 (376)
Q Consensus 124 ~~~a~~~~~g~~l~G~k~~~s~~--~~ad~~~v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~--~~~~v 195 (376)
.|++++++|||+|||+|.|+|++ ..||+++|++++++. +++++|+||.+.|||++.++|+++|++++ ++++|
T Consensus 570 ~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v 649 (822)
T PLN02876 570 ECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEI 649 (822)
T ss_pred eEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEE
Confidence 99999999999999999999999 579999999997532 45789999999999999999999999984 58899
Q ss_pred EEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHH
Q 017183 196 LLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNI 274 (376)
Q Consensus 196 ~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~ 274 (376)
.|+||+||++++++.. +++......+..+|+..++.++|+++++++.+++|+++|++||+|++++|.+|.+|++|.+++
T Consensus 650 ~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l 729 (822)
T PLN02876 650 SFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVEL 729 (822)
T ss_pred EEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHH
Confidence 9999999999999765 567777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-C-CChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHH
Q 017183 275 QAMILVGWRLCKLYEKG-A-MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINT 352 (376)
Q Consensus 275 ~a~~~~~~~~~~~~~~~-~-~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~ 352 (376)
+++|++++.++..++.. . .....++++|.++++.+.++++.++|++||.||..+++++|+|||+++..+++|++++++
T Consensus 730 eaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~ 809 (822)
T PLN02876 730 EQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHL 809 (822)
T ss_pred HHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHH
Confidence 99999999999998873 2 234568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 017183 353 LVTGREVTGI 362 (376)
Q Consensus 353 ~~i~~~~l~~ 362 (376)
..|++++++.
T Consensus 810 ~~ia~~~~~~ 819 (822)
T PLN02876 810 GTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=6.3e-53 Score=406.13 Aligned_cols=349 Identities=21% Similarity=0.260 Sum_probs=308.1
Q ss_pred hHHhHHHHhcchhHhhhhhCC------CC---HHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHH
Q 017183 3 QRVDFCIFFLNLLFQYWEKAE------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTF 72 (376)
Q Consensus 3 ~~~~f~~~~~~~~~~~d~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~ 72 (376)
+..+|++.-.|...++|+.+. +| .++++.+.+.||+++ + +++||.| ........+.++..+.+.+..
T Consensus 36 ~~~~~a~~~~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p 112 (418)
T cd01154 36 ELARLADRNPPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCP 112 (418)
T ss_pred HHHHHhhcCCCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCc
Confidence 344777733888899999888 78 778999999999999 5 6677655 344455677788877777766
Q ss_pred HHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCc----ceeEEEeeCCCCCCCcCCCeeEEEEe-CCEEEEeeeeecccCCC
Q 017183 73 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNST 147 (376)
Q Consensus 73 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~----~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~ 147 (376)
+.+|. .+..+|..+|+++|+ +|++.+.+|+ .++++++|||+.|||+....|+|+++ +|+|+|||+|+|+|++
T Consensus 113 ~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a- 189 (418)
T cd01154 113 LTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP- 189 (418)
T ss_pred HHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-
Confidence 66666 467888999988865 6999999996 89999999999999999999999999 8899999999999999
Q ss_pred CCCEEEEEEEeCCC----CCeEEEEEeCCCC-----CeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHH
Q 017183 148 FADVLVIFARNTTT----NQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 217 (376)
Q Consensus 148 ~ad~~~v~a~~~~~----~~~~~flV~~~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~ 217 (376)
.||+++|+|++++. +++++|+||.+.| ||++.+.|+++|++++++++|.|+|| .++++|.+ .++...
T Consensus 190 ~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~ 266 (418)
T cd01154 190 LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYI 266 (418)
T ss_pred ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHH
Confidence 99999999998642 5799999999875 99999999999999999999999998 37788876 678888
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---
Q 017183 218 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT--- 294 (376)
Q Consensus 218 ~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~--- 294 (376)
...++.+|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|.+|+++.+++++++++++++++.++.....
T Consensus 267 ~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~ 346 (418)
T cd01154 267 LEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPV 346 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988864211
Q ss_pred -----hhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHh
Q 017183 295 -----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 360 (376)
Q Consensus 295 -----~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 360 (376)
...++++|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++.+++..+.|.+-
T Consensus 347 ~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 347 EAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 124678999999999999999999999999999999999999999999999999999999998874
No 32
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.9e-52 Score=415.85 Aligned_cols=343 Identities=23% Similarity=0.300 Sum_probs=307.2
Q ss_pred hhhhhCCCCHHHHHHHHhcCCccCcccccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhh
Q 017183 17 QYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY 96 (376)
Q Consensus 17 ~~d~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~ 96 (376)
..++...++.+.++++.+.|+.+..+++. |.+ +....+.++|++++.|++++..+.+|.+++...|..+|+++|+++|
T Consensus 99 s~~~~~~~~~~~~~~l~~~g~~~~~~pe~-g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~ 176 (680)
T PLN02312 99 TMEQQREITMKRILYLLERGVFRGWLTET-GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKW 176 (680)
T ss_pred CHHHHHHhHHHHHHHHHHhhhcCCCCCCC-CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHH
Confidence 34556677889999999999999877332 333 6888899999999999998887888887788889999999999999
Q ss_pred hHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeC--CEEEEe-----eeeecccCC-CCCCEEEEEEEeCCC---CCeE
Q 017183 97 LPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRWIGNS-TFADVLVIFARNTTT---NQIN 165 (376)
Q Consensus 97 l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~~s~~-~~ad~~~v~a~~~~~---~~~~ 165 (376)
++.+.+|+.++|+|+|||++|||+.+++|+|++++ |+|+|| |.|+|++|+ ..||+++|+|++... .+++
T Consensus 177 L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~ 256 (680)
T PLN02312 177 LKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVH 256 (680)
T ss_pred HHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeE
Confidence 99999999999999999999999999999999984 679999 799999998 799999999998632 5799
Q ss_pred EEEEe---CC---CCCeeecccccccccccccceeEEEcceecCCCCCcCC----------------C-CcHHHHHHHhh
Q 017183 166 GYLVK---KD---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLA 222 (376)
Q Consensus 166 ~flV~---~~---~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~----------------~-~~~~~~~~~~~ 222 (376)
+|+|| .+ .|||++.+..+++|+++.+++.+.||||+||.+++|++ + .++......+.
T Consensus 257 ~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~ 336 (680)
T PLN02312 257 AFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLT 336 (680)
T ss_pred EEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHH
Confidence 99998 23 79999999999999999999999999999999999974 1 45666678889
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---
Q 017183 223 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA----P---LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA--- 292 (376)
Q Consensus 223 ~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~----~---i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~--- 292 (376)
.+|+.+++.++|+++++++.+++|++.|++||. | |.+||.+|.+|++|.+.+++++.....+.+.++.+.
T Consensus 337 ~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~ 416 (680)
T PLN02312 337 SGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPES 416 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999995 4 999999999999999999999888877777666532
Q ss_pred --CChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 293 --MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 293 --~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
+.+..++++|.++++.+.++++.|+|+|||+||..++++++++||++...+++|++.+++.++++.+++
T Consensus 417 ~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 487 (680)
T PLN02312 417 NKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLA 487 (680)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999998875
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=7e-53 Score=401.12 Aligned_cols=340 Identities=16% Similarity=0.162 Sum_probs=296.8
Q ss_pred hHHHHhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHH
Q 017183 6 DFCIFFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTI 84 (376)
Q Consensus 6 ~f~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l 84 (376)
++++.|++.+.++|+++.||.+.++.|++.||+++.+ ++|||.|+++.+.+.+++++++.|+|++++...+. .+...+
T Consensus 5 ~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~ 83 (370)
T cd01159 5 DLAPLIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRML 83 (370)
T ss_pred HHHHHHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHH
Confidence 6788999999999999999999999999999999988 99999999999999999999999999988765544 455667
Q ss_pred HhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeCCC---
Q 017183 85 ALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--- 161 (376)
Q Consensus 85 ~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~~--- 161 (376)
..+++++|++.|++.. .+ ..+ | ...+.++|++++|||+|||+|.|+|++..+|+++|.++++++
T Consensus 84 ~~~~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~ 150 (370)
T cd01159 84 AAFPPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGG 150 (370)
T ss_pred HhCCHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCC
Confidence 7788889988887642 11 111 1 134567999999999999999999999999999999998642
Q ss_pred CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCCC-------cHH---HHHHHhhHhHHHHHHH
Q 017183 162 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVLAVSRVMVAWQ 231 (376)
Q Consensus 162 ~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~-------~~~---~~~~~~~~~rl~~aa~ 231 (376)
.++++|+||.+ ||++.+.|+.+|++++++++++|+||+||++++|+..+ +.. ........+++.++++
T Consensus 151 ~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~ 228 (370)
T cd01159 151 PLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAV 228 (370)
T ss_pred CcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHH
Confidence 45899999987 99999999999999999999999999999999997532 111 2234556788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----C---hhhhhh
Q 017183 232 PIGISMGVYDMCHRYLKERKQF---GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-----T---PGHASL 300 (376)
Q Consensus 232 ~lG~~~~~l~~~~~~~~~r~~~---g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~-----~---~~~~~~ 300 (376)
++|+++++++.+.+|+++|.+| |+|++++|.+|+++++|.+.+++++++++.+++.++.+.. . ...+++
T Consensus 229 ~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~ 308 (370)
T cd01159 229 SLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRR 308 (370)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999986 6789999999999999999999999999999998877421 1 234678
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchH-HHHHHHHHHHHhc
Q 017183 301 GKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY-DINTLVTGREVTG 361 (376)
Q Consensus 301 ~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~-~~~~~~i~~~~l~ 361 (376)
+|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++ ++++..|++.+||
T Consensus 309 aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 309 DAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 9999999999986
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-48 Score=379.02 Aligned_cols=327 Identities=20% Similarity=0.227 Sum_probs=279.4
Q ss_pred HHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCc-
Q 017183 27 HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN- 104 (376)
Q Consensus 27 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~- 104 (376)
++++.+.+.||..+.. +++| .+. ....+......+..++...+...+. .+...+..+++++|+++|+|.+.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~ 165 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRY 165 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCc
Confidence 4556666789988776 6665 221 2222222223344444333333333 45556667788999999999999987
Q ss_pred ------------ceeEEEeeCCCCCCCcCCCeeEEEEe-CCEEEEeeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeC
Q 017183 105 ------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKK 171 (376)
Q Consensus 105 ------------~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~~~~~~~flV~~ 171 (376)
.++++++|||.+|||+...+|+|+++ +|+|+|||.|+|+| ++.||+++|+||++ +++++|+||+
T Consensus 166 ~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp~ 242 (538)
T PRK11561 166 DSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVPR 242 (538)
T ss_pred ccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEEC
Confidence 45699999999999999999999994 66799999999999 68899999999996 6899999999
Q ss_pred CCC-----CeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 017183 172 DAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHR 245 (376)
Q Consensus 172 ~~~-----Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~ 245 (376)
+.| ||++...++++|++++++++|.|+|| .+++||++ +|+..+...++..|+..++.++|+++++++.+++
T Consensus 243 ~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~ 319 (538)
T PRK11561 243 FLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIY 319 (538)
T ss_pred CCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 79999999999999999999999999 37788876 6888889999999999999999999999999999
Q ss_pred HHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh------hhhhhHHHHHHHHHHHHHHHHHHH
Q 017183 246 YLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP------GHASLGKSWITARARETVALGREL 319 (376)
Q Consensus 246 ~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~K~~~~~~a~~~~~~~~~~ 319 (376)
|+++|++||+||+++|.+|..|++|.++++++++++++++..+|.+.... ...+++|.++++.+.++++.++|+
T Consensus 320 yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv 399 (538)
T PRK11561 320 HAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEV 399 (538)
T ss_pred HHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998864211 235689999999999999999999
Q ss_pred hCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhccc
Q 017183 320 LGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIA 363 (376)
Q Consensus 320 ~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~~ 363 (376)
+||.||.++++++|+|||++...+++|++.+++..+.|.+.+.|
T Consensus 400 ~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~~ 443 (538)
T PRK11561 400 LGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQP 443 (538)
T ss_pred cCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999998753
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.5e-48 Score=364.16 Aligned_cols=278 Identities=35% Similarity=0.546 Sum_probs=260.1
Q ss_pred HHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 80 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 80 ~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
+..+|..+|+++|+++|++.+.+|+.++++++|||.+|+|...+.++++++++||+|||+|.|+|++..+|+++|+++++
T Consensus 44 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~ 123 (327)
T cd00567 44 GAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTD 123 (327)
T ss_pred chHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeC
Confidence 44577888999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC----CCeEEEEEeCCCCCeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHH
Q 017183 160 TT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIG 234 (376)
Q Consensus 160 ~~----~~~~~flV~~~~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG 234 (376)
+. +++.+|+||.+.|||++.+.|+.+|+++++++.++|+||+||++++++.. .++......+..+++..+++++|
T Consensus 124 ~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G 203 (327)
T cd00567 124 EEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALG 203 (327)
T ss_pred CCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 42 46789999999999999999999999999999999999999999999876 45667788889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhhHHHHHHHHHHHHH
Q 017183 235 ISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWITARARETV 313 (376)
Q Consensus 235 ~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~K~~~~~~a~~~~ 313 (376)
+++++++.+++|+++|.+||+|+.++|.+|++++++..++++++++++.+++.++.+.. .....+++|.++++.+.+++
T Consensus 204 ~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~ 283 (327)
T cd00567 204 AARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVA 283 (327)
T ss_pred HHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988654 45667899999999999999
Q ss_pred HHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHH
Q 017183 314 ALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 357 (376)
Q Consensus 314 ~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~ 357 (376)
+.+++++||.||.++++++|+|||++...+++|++++++..+++
T Consensus 284 ~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 284 DLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999887753
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.2e-48 Score=383.32 Aligned_cols=297 Identities=23% Similarity=0.308 Sum_probs=265.9
Q ss_pred CCchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe--CCEEEEe-----e
Q 017183 66 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G 138 (376)
Q Consensus 66 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G 138 (376)
+++....+.+|.++....|..+|+++|+++|||.+.+|+.++|+|+|||++|||+.+++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 44554455667766777889999999999999999999999999999999999999999999996 5779998 9
Q ss_pred eeecccC-CCCCCEEEEEEEeCC---CCCeEEEEEeCC-------CCCeeecccccccccccccceeEEEcceecCCCCC
Q 017183 139 QKRWIGN-STFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 207 (376)
Q Consensus 139 ~k~~~s~-~~~ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~ 207 (376)
.|+|+++ +..||+++|+|++.. ..++++|+||.+ .|||++.+..+++|+++.+++.+.||||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999997 689999999999852 257999999942 49999999999999999999999999999999999
Q ss_pred cCC------CC-----c-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc------ccccchHHHHHHHH
Q 017183 208 LPG------VN-----S-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA------PLAAFQINQQKLVQ 269 (376)
Q Consensus 208 lg~------~~-----~-~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~------~i~~~~~v~~~la~ 269 (376)
||+ .. + +......+..+|+.+++.++|+++++++.+++|+++|++||+ ||++||.+|.+|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 985 11 2 556677778899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC------CC------ChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhh
Q 017183 270 MLGNIQAMILVGWRLCKLYEKG------AM------TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCD 337 (376)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~------~~------~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd 337 (376)
+.+.+++++.+.+++.+.++.. .+ ....++++|.++++.+.++++.|+|+|||+||..+++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999999887652 11 24568899999999999999999999999999999999999999
Q ss_pred hcCcccccchHHHHHHHHHHHHhcc
Q 017183 338 IEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 338 ~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
++...+++|++.+++.++++.+++.
T Consensus 408 a~~~~t~eG~n~vl~~~iar~ll~~ 432 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLARYLLKQ 432 (646)
T ss_pred hccceeecCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.7e-47 Score=381.53 Aligned_cols=312 Identities=25% Similarity=0.296 Sum_probs=277.8
Q ss_pred CHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe
Q 017183 51 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 130 (376)
Q Consensus 51 ~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~ 130 (376)
++.+...+.|++++.|++++..+.+|.+++...|..+|+++|+++|++.+.+|+.++|+++|||++|||+.+.+|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 68888999999999999988777788777888999999999999999999999999999999999999999999999999
Q ss_pred C--CEEEEe-----eeeecccCCC-CCCEEEEEEEeCC---CCCeEEEEEeCC-------CCCeeecccccccccccccc
Q 017183 131 E--GGWILE-----GQKRWIGNST-FADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 192 (376)
Q Consensus 131 ~--~g~~l~-----G~k~~~s~~~-~ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~G~~~~~~ 192 (376)
+ |+|+|| |.|+|++|+. .|++++|+|++.. ..++++|+||.+ .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 5999999999842 257999999963 39999999999999999999
Q ss_pred eeEEEcceecCCCCCcCC----------------C-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 017183 193 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA 255 (376)
Q Consensus 193 ~~v~f~~v~Vp~~~~lg~----------------~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~ 255 (376)
+.+.||||+||.+++|++ + .++......+..+|+.+++.++|.++++++.+++|++.|++||.
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999975 1 23456667778899999999999999999999999999999999
Q ss_pred c-------cccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcCC-----CChhhhhhHHHHHHHHHHHHHHHH
Q 017183 256 P-------LAAFQINQQKLVQMLGNIQAMILVGWRLC-------KLYEKGA-----MTPGHASLGKSWITARARETVALG 316 (376)
Q Consensus 256 ~-------i~~~~~v~~~la~~~~~~~a~~~~~~~~~-------~~~~~~~-----~~~~~~~~~K~~~~~~a~~~~~~~ 316 (376)
| |.+||.+|.+|+++.+..++.+.+..... +..+.+. +.+..++++|.++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999998765443332 2333332 234568899999999999999999
Q ss_pred HHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 317 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 317 ~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+|+|||+||..++++++++||.+...+++|++.+++.++++.+++.
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~ 445 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998864
No 38
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-45 Score=352.72 Aligned_cols=290 Identities=20% Similarity=0.249 Sum_probs=258.7
Q ss_pred HHHHHHhc-CCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcc
Q 017183 28 VIPKLGAL-RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 105 (376)
Q Consensus 28 ~~~~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~ 105 (376)
+-+.++++ ||+++.+ ++|||.|++..+.+.++|++++.+++.+..+..|..++...+..+|+++||++|||.+.+|+.
T Consensus 55 ~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~ 134 (520)
T PTZ00457 55 IRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTI 134 (520)
T ss_pred HHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCc
Confidence 33367788 9999988 999999999999999999999988877665556765666788889999999999999999999
Q ss_pred eeEEEeeCCCCCCCcCCCeeEEEEe-CCEEEEeeeeecccCCCCCCEEEEEEEeCC----------CCCeEEEEEeCCCC
Q 017183 106 IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAP 174 (376)
Q Consensus 106 ~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~----------~~~~~~flV~~~~~ 174 (376)
+++++++| +.|||+....|+|+++ +|+|+|||+|.|+ ++..||+++|+|++++ .+++++|+||.+.|
T Consensus 135 i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dap 212 (520)
T PTZ00457 135 MMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAK 212 (520)
T ss_pred EEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCC
Confidence 99999988 8899999999999986 4579999999966 8999999999999742 13589999999999
Q ss_pred CeeecccccccccccccceeEEEcceecCCCCCcCCC-CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017183 175 GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 253 (376)
Q Consensus 175 Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~ 253 (376)
||++.. ++|+|||| |.+++||.. ++++.....++.+|+.+++..+|+++++++.+++|++
T Consensus 213 GVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~----- 273 (520)
T PTZ00457 213 GVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA----- 273 (520)
T ss_pred ceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 999852 69999997 999999876 7788888899999999999999999999999999976
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChhhhhhHHHHHH---HHHHHHHHHHHHHhCCccccCcC
Q 017183 254 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-MTPGHASLGKSWIT---ARARETVALGRELLGGNGILSDF 329 (376)
Q Consensus 254 g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~K~~~~---~~a~~~~~~~~~~~Gg~g~~~~~ 329 (376)
+|.+|+++++|.+.++++|+++|.+++.+|.+. +....++++|++++ +.+..++.+++| ++.
T Consensus 274 ------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~ 339 (520)
T PTZ00457 274 ------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PST 339 (520)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCc
Confidence 378999999999999999999999999999974 45788999999999 777777777766 899
Q ss_pred cHHHHhhhhcCcccccchHHHHH
Q 017183 330 LVAKAFCDIEPIYTYEGTYDINT 352 (376)
Q Consensus 330 ~~~r~~rd~~~~~~~~g~~~~~~ 352 (376)
|++|++||++.+.+++|++++++
T Consensus 340 ~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 340 TLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999998
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.6e-44 Score=357.81 Aligned_cols=291 Identities=27% Similarity=0.367 Sum_probs=255.1
Q ss_pred HHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEe--CCEEEEe-----eeeeccc
Q 017183 72 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIG 144 (376)
Q Consensus 72 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~~s 144 (376)
.+.+|.++....|..+|+++|+++|+|.+.+|++++|+|+|||++|||+.+.+|+|+++ +|+|+|| |.|+|++
T Consensus 98 ~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig 177 (664)
T PLN02443 98 YTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPG 177 (664)
T ss_pred eeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeec
Confidence 34566666677889999999999999999999999999999999999999999999998 5789998 9999999
Q ss_pred CC-CCCCEEEEEEEeCC---CCCeEEEEEeCC-------CCCeeecccccccc---cccccceeEEEcceecCCCCCcCC
Q 017183 145 NS-TFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG 210 (376)
Q Consensus 145 ~~-~~ad~~~v~a~~~~---~~~~~~flV~~~-------~~Gv~~~~~~~~~G---~~~~~~~~v~f~~v~Vp~~~~lg~ 210 (376)
++ ..||+++|+|++.. ..++++|+||.+ .|||++.+.+.++| .++.+++.+.|+||+||.+++|++
T Consensus 178 ~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~ 257 (664)
T PLN02443 178 GLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR 257 (664)
T ss_pred CCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence 97 78999999999742 257999999975 79999999999999 566899999999999999999975
Q ss_pred C-----CcH--------HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc--cchH-----HHHHHHHH
Q 017183 211 V-----NSF--------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLA--AFQI-----NQQKLVQM 270 (376)
Q Consensus 211 ~-----~~~--------~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~--~~~~-----v~~~la~~ 270 (376)
. ++. ......+..+|+.+++.++|.++++++.+++|++.|++||.|++ ++|. +|.+|.++
T Consensus 258 ~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~ 337 (664)
T PLN02443 258 LSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPL 337 (664)
T ss_pred ccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHH
Confidence 3 111 23345667889999999999999999999999999999999987 4554 49999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc-------CCC-----ChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhh
Q 017183 271 LGNIQAMILVGWRLCKLYEK-------GAM-----TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDI 338 (376)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~-------~~~-----~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~ 338 (376)
.+.+++++.+.+++++.++. +.. .+..++++|.++++.+.++++.|+|+|||+||..++++++++||.
T Consensus 338 la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~ 417 (664)
T PLN02443 338 LASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVY 417 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhh
Confidence 99999999999988877653 111 223478999999999999999999999999999999999999999
Q ss_pred cCcccccchHHHHHHHHHHHHhcc
Q 017183 339 EPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 339 ~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
....+++|++.+++.++++.+++.
T Consensus 418 ~~~~t~EGdn~Vl~~~iar~ll~~ 441 (664)
T PLN02443 418 VPACTYEGDNVVLLLQVARFLMKT 441 (664)
T ss_pred hcceeecCcHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=7.6e-43 Score=296.59 Aligned_cols=332 Identities=17% Similarity=0.218 Sum_probs=289.4
Q ss_pred HHHHHHhcCCccCcc----cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhh--hHHHHHHHhcCCHHHHHhhhHHhh
Q 017183 28 VIPKLGALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS--SLAMLTIALCGSEEQKQKYLPSLA 101 (376)
Q Consensus 28 ~~~~l~~~Gl~~~~~----~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~--~~~~~~l~~~g~~~q~~~~l~~~~ 101 (376)
+-+..+..|++.+++ ++| |.|++..|++-+.|.+++.- -..-.+..+. .--+..+..||+++||.+||-.++
T Consensus 32 LKE~aK~eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~-~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLL 109 (392)
T KOG1469|consen 32 LKEMAKVEGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSF-FAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLL 109 (392)
T ss_pred HHHHHHhcchHHhhhHHHHHhh-ccCccchhHHHHHHHhcccc-ccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHh
Confidence 333444689999865 245 58999999999999999853 1111222221 112346899999999999999999
Q ss_pred cCcceeEEEeeCCCC-CCCcCCCeeEEEEeCCEEEEeeeeecccCC--CCCCEEEEEEEeCCC-----CCeEEEEEeCCC
Q 017183 102 QLNTIACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT-----NQINGYLVKKDA 173 (376)
Q Consensus 102 ~g~~~~~~a~te~~~-g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~--~~ad~~~v~a~~~~~-----~~~~~flV~~~~ 173 (376)
+|++..|||+|||+- .||..+.++..++++|.|++||+|+|+||+ +.+...+++.+++.. .+.++.|||.+.
T Consensus 110 eG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~T 189 (392)
T KOG1469|consen 110 EGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNT 189 (392)
T ss_pred cCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCC
Confidence 999999999999985 689999999999999999999999999998 567788888888754 568999999999
Q ss_pred CCeeecccccccccccc--cceeEEEcceecCCCCCc-CCCCcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017183 174 PGLTVTKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKER 250 (376)
Q Consensus 174 ~Gv~~~~~~~~~G~~~~--~~~~v~f~~v~Vp~~~~l-g~~~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r 250 (376)
|||++..+.+..|.... ++.+|+|+||+||..+.+ |+..|++..+..+..+|+..|.-.+|.++++++..-+-+..|
T Consensus 190 pGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sR 269 (392)
T KOG1469|consen 190 PGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSR 269 (392)
T ss_pred CCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999998888888765 467899999999999886 667899999999999999999999999999999999999999
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCc
Q 017183 251 KQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG--AMTPGHASLGKSWITARARETVALGRELLGGNGILSD 328 (376)
Q Consensus 251 ~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~ 328 (376)
..||+++.++..+...|++...+++.+|.++.++++.+|.- .......+++|+.+...+.++++.++|.+||.|...+
T Consensus 270 iaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~ 349 (392)
T KOG1469|consen 270 IAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSD 349 (392)
T ss_pred HHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999984 3344568899999999999999999999999999999
Q ss_pred CcHHHHhhhhcCcccccchHHHHHHHHHHHHhc
Q 017183 329 FLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 361 (376)
Q Consensus 329 ~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~ 361 (376)
.++.++|--.++..+..|...++...|++.-+.
T Consensus 350 ~~la~l~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 350 TPLANLYAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred ceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence 999999999999999999999999988876543
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-34 Score=263.02 Aligned_cols=340 Identities=24% Similarity=0.321 Sum_probs=288.8
Q ss_pred hhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhhh
Q 017183 19 WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 97 (376)
Q Consensus 19 d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l 97 (376)
|+...+.-..|..+.+.|.+.... +.. . -+..-...+.|.++-+|.|++.=+..|..+....+..+|++..++ |+
T Consensus 73 e~qRel~~~r~~~l~~~gv~~~~~~~~~--~-~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi 148 (661)
T KOG0135|consen 73 EEQRELCMKRIKRLVELGVFKFWLVEDG--P-EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YI 148 (661)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeecCc--h-HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HH
Confidence 334444444566666667766544 331 1 134467788999999999999999999999999999999999988 99
Q ss_pred HHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeC--CEEEEe-----eeeecccCC-CCCCEEEEEEEeC--C-CCCeEE
Q 017183 98 PSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRWIGNS-TFADVLVIFARNT--T-TNQING 166 (376)
Q Consensus 98 ~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~~s~~-~~ad~~~v~a~~~--~-~~~~~~ 166 (376)
..+-+-+.++|||+||.++|||....+|+|+.|+ +.|+|| ..|.|+.|. .+|++++|+|+.- + ..+++.
T Consensus 149 ~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~ 228 (661)
T KOG0135|consen 149 QKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHG 228 (661)
T ss_pred hhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceee
Confidence 9999999999999999999999999999999984 569999 789999985 7899999999984 2 267999
Q ss_pred EEEeCC-------CCCeeecccccccccccccceeEEEcceecCCCCCcCCC-----Cc------------HHHHHHHhh
Q 017183 167 YLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-----NS------------FQDTSKVLA 222 (376)
Q Consensus 167 flV~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~-----~~------------~~~~~~~~~ 222 (376)
|+||.+ .|||+|.+.-.+.|++|.+++.+.|+||++|-+++|-+. +| +......+.
T Consensus 229 FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls 308 (661)
T KOG0135|consen 229 FIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLS 308 (661)
T ss_pred EEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccc
Confidence 999864 689999999999999999999999999999999998321 11 112223456
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Q 017183 223 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG---- 291 (376)
Q Consensus 223 ~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~-------~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~---- 291 (376)
.+|+.++..++|.++-++..+++|+..|++||. ||.++|..|.+|-.+.+...+...+.......+.+.
T Consensus 309 ~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~ 388 (661)
T KOG0135|consen 309 SGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRT 388 (661)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999999999999999999999984 678999999999999999999888877777666552
Q ss_pred ------CCChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHhcc
Q 017183 292 ------AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 292 ------~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
.+.++.++..|.+++....+++++|.+.|||+||...+.+..+-.|--....++|+|.|+..+.++.||+.
T Consensus 389 ~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 389 NEGVNSKEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred ccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 23345678899999999999999999999999999999999999999999999999999999999999876
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.95 E-value=4e-25 Score=213.54 Aligned_cols=237 Identities=18% Similarity=0.183 Sum_probs=193.6
Q ss_pred HhcCCH--HHHHhhhHHhhcCcceeEEEeeCCCCC-C----CcCCC--eeEEE-EeCCEEEEeeeeecccCCCCCCEEEE
Q 017183 85 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAYG-S----DASAL--NTTAT-KVEGGWILEGQKRWIGNSTFADVLVI 154 (376)
Q Consensus 85 ~~~g~~--~q~~~~l~~~~~g~~~~~~a~te~~~g-~----~~~~~--~~~a~-~~~~g~~l~G~k~~~s~~~~ad~~~v 154 (376)
..++++ +--..|+..+.+.++..+.+++.|-.. | ...++ .+..+ +++|||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444444 334689999999999999999999531 1 11122 23444 578899999999999997 9999999
Q ss_pred EEEeCCC----CC--eEEEEEeCCCCCeeecccccccccccc-----------cceeEEEcceecCCCCC--cCCCCcHH
Q 017183 155 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGVNSFQ 215 (376)
Q Consensus 155 ~a~~~~~----~~--~~~flV~~~~~Gv~~~~~~~~~G~~~~-----------~~~~v~f~~v~Vp~~~~--lg~~~~~~ 215 (376)
+++++.. ++ .+.|+||.+.||+++....++.|.++. .++.|.||||+||++++ +|..+
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e--- 274 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVE--- 274 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHH---
Confidence 9998632 22 688999999999999988888888876 67999999999999999 66531
Q ss_pred HHHHHh--hHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Q 017183 216 DTSKVL--AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA- 292 (376)
Q Consensus 216 ~~~~~~--~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~- 292 (376)
.....+ ...++..+..++|++..+++.++.+++. ..++.++.++|+||++|++|.+.++++++++++++...+.+.
T Consensus 275 ~a~~~f~~~~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~ 353 (477)
T TIGR02309 275 LCNNAYAATGAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAY 353 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 111111 1223566888999999999999999999 899999999999999999999999999999999999887743
Q ss_pred ----CChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccC
Q 017183 293 ----MTPGHASLGKSWITARARETVALGRELLGGNGILS 327 (376)
Q Consensus 293 ----~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~ 327 (376)
+....++++|.++++...++. .++|++||.|+..
T Consensus 354 G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 354 GLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 456778999999999999995 9999999999975
No 43
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=211.82 Aligned_cols=297 Identities=22% Similarity=0.271 Sum_probs=244.5
Q ss_pred CCchhHHHHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcceeEEEeeCCCCCCCcCCCeeEEEEeCCE--EEEe-----e
Q 017183 66 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILE-----G 138 (376)
Q Consensus 66 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g--~~l~-----G 138 (376)
...-+..+..|..+....|..-|++||.++|+......++++|+|-||.++|+++...+|+|+.|... |+|| .
T Consensus 104 ~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta 183 (670)
T KOG0136|consen 104 LGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTA 183 (670)
T ss_pred cccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcce
Confidence 33445556778878888999999999999999999999999999999999999999999999998764 9998 8
Q ss_pred eeecccC-CCCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeeecccccccccccccceeEEEcceecCCCCC
Q 017183 139 QKRWIGN-STFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 207 (376)
Q Consensus 139 ~k~~~s~-~~~ad~~~v~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~ 207 (376)
.|||..+ +..+++.+|.|++- ...++..|+||.+ .|||++++.-.++|..+.+++-+-||||+||-++.
T Consensus 184 ~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nm 263 (670)
T KOG0136|consen 184 TKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNM 263 (670)
T ss_pred ecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhh
Confidence 9999977 57889999999984 2267889999975 68999999999999999999999999999999998
Q ss_pred cCCC-----CcH-------HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-------cccccchHHHHHHH
Q 017183 208 LPGV-----NSF-------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG-------APLAAFQINQQKLV 268 (376)
Q Consensus 208 lg~~-----~~~-------~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g-------~~i~~~~~v~~~la 268 (376)
+.+- +|. ......+-..|...+.-..=+...|...+.+|+..|+|+. ..|.|||..|.+|=
T Consensus 264 Lmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlF 343 (670)
T KOG0136|consen 264 LMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLF 343 (670)
T ss_pred hhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHh
Confidence 8431 111 1112222334555555556677888999999999999963 34889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HcC-----CCChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhh
Q 017183 269 QMLGNIQAMILVGWRLCKLY-------EKG-----AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFC 336 (376)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~-------~~~-----~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~r 336 (376)
...+.-.+-+.......+.+ ..+ ++.+...+.+|+.++..+.+-+++|...||||||..-+.+..+|-
T Consensus 344 P~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~ 423 (670)
T KOG0136|consen 344 PQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYG 423 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCcccee
Confidence 88777777665544444433 333 234566788999999999999999999999999999999999999
Q ss_pred hhcCcccccchHHHHHHHHHHHHhcc
Q 017183 337 DIEPIYTYEGTYDINTLVTGREVTGI 362 (376)
Q Consensus 337 d~~~~~~~~g~~~~~~~~i~~~~l~~ 362 (376)
+.-..=.++|.|.|+..++||+|.+.
T Consensus 424 ~~v~~CTYEGEN~VmlLQ~ARfLmKs 449 (670)
T KOG0136|consen 424 VAVGACTYEGENTVLLLQVARFLVKS 449 (670)
T ss_pred eeeeeeeeeccceeehHHHHHHHHHH
Confidence 99999999999999999999998764
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.90 E-value=3e-22 Score=165.97 Aligned_cols=149 Identities=25% Similarity=0.420 Sum_probs=144.8
Q ss_pred CcHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017183 212 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 291 (376)
Q Consensus 212 ~~~~~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 291 (376)
+|+......+..+|+.+++..+|.++.+++.+.+|+++|++||+|+.++|.++.+++++..+++++++++++++..++.+
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchHHHHHHHHHHHHh
Q 017183 292 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 360 (376)
Q Consensus 292 ~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~l 360 (376)
.......+++|.++++.+.++++.+++++|+.||.+++++++++||++...+++|++.+++..|++++|
T Consensus 82 ~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 82 QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 888888999999999999999999999999999999999999999999999999999999999999986
No 45
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.67 E-value=8.4e-16 Score=124.70 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC----h
Q 017183 226 VMVAWQPIGISMGVYDMCHRYLKERKQ--FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGAMT----P 295 (376)
Q Consensus 226 l~~aa~~lG~~~~~l~~~~~~~~~r~~--~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~----~~~~~----~ 295 (376)
|.+++.++|+++++++++.++++.|.. .+.+..+.|.+|.+|+++...+++++++++.+++.++ .+... .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999887 6789999999999999999999999999999999854 44432 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHHHhhhhcCcccccchH
Q 017183 296 GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY 348 (376)
Q Consensus 296 ~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r~~rd~~~~~~~~g~~ 348 (376)
......|.++.+.+.++++.+++++|+.++.+++|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 34566899999999999999999999999999999999999999999888765
No 46
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.66 E-value=2.5e-16 Score=123.92 Aligned_cols=103 Identities=36% Similarity=0.438 Sum_probs=94.9
Q ss_pred hhHH-hHHH-HhcchhHhhhhhCCCCHHHHHHHHhcCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhh
Q 017183 2 KQRV-DFCI-FFLNLLFQYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSS 78 (376)
Q Consensus 2 ~~~~-~f~~-~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 78 (376)
++.+ +|++ ++.|...++|+++.+|+++|+++.+.||+++.+ ++|||.+.++.+.+.++++++++|+++++.+.+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~ 87 (113)
T PF02771_consen 8 REEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQS 87 (113)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhH
Confidence 4555 8998 899999999998899999999999999999988 999999999999999999999999999998888877
Q ss_pred HHHHHHHhcCCHHHHHhhhHHhhcCc
Q 017183 79 LAMLTIALCGSEEQKQKYLPSLAQLN 104 (376)
Q Consensus 79 ~~~~~l~~~g~~~q~~~~l~~~~~g~ 104 (376)
++..+|..+|+++||++|+|.+.+|+
T Consensus 88 l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 88 LGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp CHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 77789999999999999999999986
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.58 E-value=4e-15 Score=99.03 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.2
Q ss_pred EEEeeCCCCCCCcCCCeeEEEEeCCEEEEeeeeecccCCCCCCEEEEEEEeC
Q 017183 108 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 159 (376)
Q Consensus 108 ~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~ 159 (376)
++|+|||.+|+|+..++++|+++++||+|||+|.|+++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 5899999999999999999999999999999999999999999999999983
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.49 E-value=2.4e-11 Score=117.60 Aligned_cols=226 Identities=10% Similarity=0.064 Sum_probs=150.1
Q ss_pred HHHhhhHHhhcCcceeEEEeeCCCCC-C----CcCCCeeEEE-EeCCEEEEeeeeecccCCCCCCEEEE-EEEe----CC
Q 017183 92 QKQKYLPSLAQLNTIACWALTEPAYG-S----DASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVI-FARN----TT 160 (376)
Q Consensus 92 q~~~~l~~~~~g~~~~~~a~te~~~g-~----~~~~~~~~a~-~~~~g~~l~G~k~~~s~~~~ad~~~v-~a~~----~~ 160 (376)
--.+|+..+.+.++..+.+++.|-.. | ...++-...+ ++++|.+|+|.|...|++..+|.++| .... ++
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d 216 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDN 216 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCC
Confidence 34689999999999999999998531 1 1113333444 47789999999999999999999888 4433 22
Q ss_pred CCCeEEEEEeCCCCCeeeccccccc----c----c-------ccccceeEEEcceecCCCCCcCCCCcHHHHHH------
Q 017183 161 TNQINGYLVKKDAPGLTVTKIENKI----G----L-------RIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK------ 219 (376)
Q Consensus 161 ~~~~~~flV~~~~~Gv~~~~~~~~~----G----~-------~~~~~~~v~f~~v~Vp~~~~lg~~~~~~~~~~------ 219 (376)
.+-...|.||.+.|||++....... + . -+...+-+.||||+||+++|+-- ...+....
T Consensus 217 ~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~-gd~e~~~~~~~~~~ 295 (519)
T TIGR02310 217 DDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY-RDFERCRTWAQYGG 295 (519)
T ss_pred CCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec-CCHHHHHhHHHhhh
Confidence 2334569999999999886443221 0 0 01224679999999999999821 11111111
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC
Q 017183 220 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-----AMT 294 (376)
Q Consensus 220 ~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 294 (376)
+...+....+...++.++-.+-.+..-+.. ..+.++|+||++|+|+....+..+++...+....... -++
T Consensus 296 ~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~ 370 (519)
T TIGR02310 296 FARLFPMQACTRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPS 370 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeC
Confidence 111111111223334444444333333333 2345899999999999999999999988777643332 144
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCc
Q 017183 295 PGHASLGKSWITARARETVALGRELLGGN 323 (376)
Q Consensus 295 ~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~ 323 (376)
......+|.+.++.-.++.+.+.+++||.
T Consensus 371 ~~~~~a~r~~~~~~y~r~~eil~~~~agG 399 (519)
T TIGR02310 371 AQALQTYRVMAPMAYHTIKKIIEQTVTSG 399 (519)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHccCC
Confidence 55678899999999999999988666653
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=5e-12 Score=118.21 Aligned_cols=234 Identities=15% Similarity=0.203 Sum_probs=160.2
Q ss_pred cCCHH--HHHhhhHHhhcCcceeEEEeeCCCCC-C-Cc---C--CCeeEEE-EeCCEEEEeeeeecccCCCCCCEEEEE-
Q 017183 87 CGSEE--QKQKYLPSLAQLNTIACWALTEPAYG-S-DA---S--ALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIF- 155 (376)
Q Consensus 87 ~g~~~--q~~~~l~~~~~g~~~~~~a~te~~~g-~-~~---~--~~~~~a~-~~~~g~~l~G~k~~~s~~~~ad~~~v~- 155 (376)
++++. --..|+..+.+.++..+-|++.|-.. | .+ . ..-.+.+ +.++|.+|+|.|..+|++..+|..+|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 55553 33679999999999999999998531 1 11 1 2333443 478899999999999999999999988
Q ss_pred EEe---CCCCCeEEEEEeCCCCCeeeccccc---ccccccc------------cceeEEEcceecCCCCCcCCCCcHH--
Q 017183 156 ARN---TTTNQINGYLVKKDAPGLTVTKIEN---KIGLRIV------------QNGDILLKKVFVPDEDRLPGVNSFQ-- 215 (376)
Q Consensus 156 a~~---~~~~~~~~flV~~~~~Gv~~~~~~~---~~G~~~~------------~~~~v~f~~v~Vp~~~~lg~~~~~~-- 215 (376)
.+. ++.+-...|.+|.|.|||.+.-..+ ..|+.+. ..+-+.||||+||+++++= ...++
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~-y~d~~~~ 283 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI-YRDLERA 283 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee-eccHHHH
Confidence 333 2224456799999999988754432 1221111 2355999999999999982 12222
Q ss_pred ----HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 017183 216 ----DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 291 (376)
Q Consensus 216 ----~~~~~~~~~rl~~aa~~lG~~~~~l~~~~~~~~~r~~~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 291 (376)
....+..+.|...+.+-.+.+.-.+-.+..-++. ..+.++++||+.|+||....+.+.++...++......
T Consensus 284 ~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~ 358 (493)
T COG2368 284 YAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKN 358 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1122223334444444444444433333333332 2346899999999999999999999999888765553
Q ss_pred C-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCCcccc
Q 017183 292 A-----MTPGHASLGKSWITARARETVALGRELLGGNGIL 326 (376)
Q Consensus 292 ~-----~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~ 326 (376)
. ++...+...|.+++..-.++.+.+.++.||.-.+
T Consensus 359 ~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 359 PNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred CCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 2 4566788899999999999999999998875544
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.88 E-value=1e-08 Score=91.10 Aligned_cols=118 Identities=19% Similarity=0.328 Sum_probs=78.5
Q ss_pred HHHHhhhHHhhcCcceeEEEeeCCCC--CCCc----CCCeeEEE-EeCCEEEEeeeeecccCCCCCCEEEEEEEeC----
Q 017183 91 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT---- 159 (376)
Q Consensus 91 ~q~~~~l~~~~~g~~~~~~a~te~~~--g~~~----~~~~~~a~-~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~---- 159 (376)
+--..|+..+.++++..+.+++.|.. +..+ ...-++.+ ++++|.+|+|.|...|+++.+|.++|+-...
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 33467999999999999999999963 2222 12445555 4788999999999999999999999986553
Q ss_pred CCCCeEEEEEeCCCCCeeecccccccccc--c----------ccceeEEEcceecCCCCCc
Q 017183 160 TTNQINGYLVKKDAPGLTVTKIENKIGLR--I----------VQNGDILLKKVFVPDEDRL 208 (376)
Q Consensus 160 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~~--~----------~~~~~v~f~~v~Vp~~~~l 208 (376)
+.+-...|.||.+.||+++....+....+ . ...+-+.||||+||+++++
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 22335679999999999887654443333 1 1247799999999999875
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.51 E-value=0.18 Score=43.69 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=57.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCChhhhhhHHHHHHHHHHHHHHHHHHHhCCcccc
Q 017183 256 PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-----AMTPGHASLGKSWITARARETVALGRELLGGNGIL 326 (376)
Q Consensus 256 ~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~ 326 (376)
.+.++|+||++|+|+....+..++++..+....... .++......+|.+.++.-.++++.+.+++||.-.+
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~ 118 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLIT 118 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 346799999999999999999999998777654432 24556688999999999999999999988887665
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=89.07 E-value=7 Score=39.00 Aligned_cols=79 Identities=18% Similarity=0.105 Sum_probs=64.0
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcH
Q 017183 253 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP-GHASLGKSWITARARETVALGRELLGGNGILSDFLV 331 (376)
Q Consensus 253 ~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~ 331 (376)
+|+.|.+.|.+..+|+++.+.++++-+.+-++...+..+.+.. .+..+++.++.+...++-+.+-+++.. ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 4678889999999999999999999999999988888875443 235799999999999999888888876 55443333
Q ss_pred H
Q 017183 332 A 332 (376)
Q Consensus 332 ~ 332 (376)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=88.21 E-value=0.49 Score=37.39 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=27.8
Q ss_pred HHHhhhHHHHHHHhcCCHHHHHhhhHHhhcCcc
Q 017183 73 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 105 (376)
Q Consensus 73 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~ 105 (376)
+.+|..+...+|...|+++|+++|+|...+.++
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 347887888999999999999999999888765
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=84.27 E-value=20 Score=35.76 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=62.2
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChhhhhhHHHHHHHHHHHHHHHHHHHhCC
Q 017183 253 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-MTPGHASLGKSWITARARETVALGRELLGG 322 (376)
Q Consensus 253 ~g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg 322 (376)
+|+.|.+.|.+-+++++....++++.+.+.++.+.+..+- ..+.+...++.+|.+...++...+.++.++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4778889999999999999999999999999999999884 445568899999999999999999888777
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=35.35 E-value=2.2e+02 Score=30.20 Aligned_cols=99 Identities=14% Similarity=0.039 Sum_probs=65.3
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCCccccCcCcHHH
Q 017183 254 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAK 333 (376)
Q Consensus 254 g~~i~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~~~r 333 (376)
|..+.+.|.+..+|+++.+.++.+-+.+.+.- +++.+... ..+++.++.+...++-+.+-++..... ...+..
T Consensus 560 g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~~ 632 (777)
T PRK09463 560 GGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEAD-LPLVHWAVQDALYQAEQALDGLLRNFP---NRVVAG 632 (777)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHH
Confidence 45677888999999999999999988877666 34433333 467777777776666665555554433 223444
Q ss_pred HhhhhcCcc---cccchHHHHHHHHHHHHh
Q 017183 334 AFCDIEPIY---TYEGTYDINTLVTGREVT 360 (376)
Q Consensus 334 ~~rd~~~~~---~~~g~~~~~~~~i~~~~l 360 (376)
+.|-+ +++ .+.+.+|-+..++++.++
T Consensus 633 ~~~~~-~~p~g~~~~~p~d~~~~~~~~~~~ 661 (777)
T PRK09463 633 LLRVL-VFPLGRRYRAPSDKLDHQVAKLLQ 661 (777)
T ss_pred HHHHe-eeCCCCCCCCCCHHHHHHHHHHHh
Confidence 44433 333 455667888888888876
No 56
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=27.61 E-value=1.3e+02 Score=24.29 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=31.4
Q ss_pred EeCCEEEEeeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCC-----CCCeeeccccc--------ccccccccceeE
Q 017183 129 KVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD-----APGLTVTKIEN--------KIGLRIVQNGDI 195 (376)
Q Consensus 129 ~~~~g~~l~G~k~~~s~~~~ad~~~v~a~~~~~~~~~~flV~~~-----~~Gv~~~~~~~--------~~G~~~~~~~~v 195 (376)
-+.+.|.++|+|...-.. ..+....+.+-|+|.. -|.|++..... ..+.....++++
T Consensus 66 a~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~~~~~~~~~~~~~~~~~~~~ev 135 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYDPSNISKGDSMPRLEPFPPCEV 135 (147)
T ss_pred cCCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEeccCCCcccccccccccCCCceeE
Confidence 355679999999743211 1111123455566654 45566654431 122334455666
Q ss_pred EEcc
Q 017183 196 LLKK 199 (376)
Q Consensus 196 ~f~~ 199 (376)
.+.|
T Consensus 136 ~~~n 139 (147)
T PF12584_consen 136 DYRN 139 (147)
T ss_pred EEcC
Confidence 6655
No 57
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=24.36 E-value=2.3e+02 Score=24.69 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=47.7
Q ss_pred hhhCCCCHHHHHHHHh-cCCccCcc-cccCCCCCCHHHHHHHHHHHHccCCchhHHHHHhhhHHHHHHHhcCCHHHHHhh
Q 017183 19 WEKAEFPFHVIPKLGA-LRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY 96 (376)
Q Consensus 19 d~~~~~~~~~~~~l~~-~Gl~~~~~-~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~ 96 (376)
+++..++.++++.+|. +|-+++-+ .+-. ++.++-.+++.|=. .+.+|...++++.+++.
T Consensus 96 EEetTISAKvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLRH---------------HSNLLAnIgdP~VreqV 156 (238)
T PF02084_consen 96 EEETTISAKVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLRH---------------HSNLLANIGDPEVREQV 156 (238)
T ss_pred CCCccccHHHHHHHHHHhcccccccccccC----ChhhHHHHHHHHHH---------------HHHHHhhcCCHHHHHHH
Confidence 4577789999999886 78888733 3322 57777777776643 23467888999999999
Q ss_pred hHHhhcC
Q 017183 97 LPSLAQL 103 (376)
Q Consensus 97 l~~~~~g 103 (376)
|..+.+.
T Consensus 157 LsAMqEe 163 (238)
T PF02084_consen 157 LSAMQEE 163 (238)
T ss_pred HHHHhhh
Confidence 9888755
No 58
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=23.53 E-value=80 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.1
Q ss_pred CCEEEEeeeeecccCC
Q 017183 131 EGGWILEGQKRWIGNS 146 (376)
Q Consensus 131 ~~g~~l~G~k~~~s~~ 146 (376)
=|||.|||+|...+.-
T Consensus 113 ~DGW~LnGe~FPs~~D 128 (311)
T PF05428_consen 113 FDGWELNGEKFPSSQD 128 (311)
T ss_pred EeceEECccCCcCccc
Confidence 3899999999655443
No 59
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=22.38 E-value=1.1e+02 Score=21.14 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=13.9
Q ss_pred eEEEEeCCEEEEeeeeecc
Q 017183 125 TTATKVEGGWILEGQKRWI 143 (376)
Q Consensus 125 ~~a~~~~~g~~l~G~k~~~ 143 (376)
-.++.++|.|+++|+...-
T Consensus 24 ~~v~~~~~~WiV~Gtl~~~ 42 (66)
T PF15631_consen 24 YRVTLDGDSWIVEGTLPPG 42 (66)
T ss_pred eEEecCCCeEEEEeecCCC
Confidence 3566677889999998433
Done!