BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017184
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/290 (54%), Positives = 201/290 (69%), Gaps = 3/290 (1%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIG-VVPGLAVILVGDRKDSATYVRNKKKACQS 141
SA++IDGKA+A IR E+ +V+ +++ G VPGLA I+VG R DS YV+ K KA
Sbjct: 5 SAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAE 64
Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
VG+ SF V LPED S++ + ++ N+DP+ HGI+VQLPLP H++E + + KD
Sbjct: 65 VGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124
Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
D P+N+G L +GREP F PCT KG I LL R G ++ GKRAVV+GRSNIVG P A L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184
Query: 262 LQREDATVSIVHSRTKNPEEIT--RQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
L +E+ATV+IVHS T + I R ADI+I+A+GQP V+G WIK GA ++DVG PV
Sbjct: 185 LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP 244
Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
D GYRLVGDVC+EEA A+ I+PVPGGVGPMTIAMLL NTL + K
Sbjct: 245 DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFK 294
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 201/292 (68%), Gaps = 3/292 (1%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
A A++++GK ++ QIR + +V+++K+ + G P LA++ VG+R DS Y+ K KA +
Sbjct: 2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
+GI + + LP T+E EV+K+I+ N+D +VHG LVQLPL I+ + ++NA++ E
Sbjct: 62 EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121
Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
KDVDG +N GRLA FIPCTPKGC+EL+ G I G+ AVV+GRS IVG P
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
LL +ATV+ HS+T + +E + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 201/292 (68%), Gaps = 3/292 (1%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
A A++++GK ++ QIR + +V+++K+ + G P LA++ VG+R DS Y+ K KA +
Sbjct: 2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
+GI + + LP T+E EV+K+I+ N+D +VHG LVQLPL I+ + ++NA++ E
Sbjct: 62 EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121
Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
KDVDG +N GRLA FIPCTPKGC+EL+ G I G+ AVV+GRS IVG P
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
LL +ATV+ HS+T + +E + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 189/291 (64%), Gaps = 8/291 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+A++IDGKA+A +R +I V+ + VPGLAVILVG S YV +K+K C+ V
Sbjct: 4 TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G S LP +TS+ ++L I NDDP++ GILVQLPLP H+D +L + +KDVD
Sbjct: 64 GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP NIGRLA R PL PCTPKG + LL G D+ G AVV+G SNIVG P AL L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
TV++ H T++ + +AD+++ A G+P +V+G WIK GA++IDVGIN D
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG- 240
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
RLVGDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +H+
Sbjct: 241 -----RLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD 286
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 184/293 (62%), Gaps = 8/293 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+AK+IDGK +A+Q+R E+ +V A PGLAV+LVG S YV +K+KAC+ V
Sbjct: 2 AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G S LPE TSE E+L+ I N D ++ GILVQLPLP ID +L + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP N+GRL R P PCTP+G + LL RY D G AVVIG SNIVG P ++ L
Sbjct: 122 GFHPYNVGRLCQRA--PRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
T ++ H TKN AD++I AVG+P + G WIK GA++IDVGIN +E+ K
Sbjct: 180 LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGK 239
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
+VGDV +E+A + AS ITPVPGGVGPMT+A L+ NTL + H+ Q
Sbjct: 240 ------VVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQ 286
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 264 bits (674), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 190/288 (65%), Gaps = 8/288 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++DGKA++ +I++E+ E ++ + G+ LAVILVGD S TYV++K KAC+ GI
Sbjct: 6 LLDGKALSAKIKEELK-EKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIK 64
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S HL E+ ++ E+L I+ N D SVHGILVQLPLP HI + IL ++ KDVDGFH
Sbjct: 65 SLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH 124
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P+N+G L + G E F+PCTP G +LL Y D++GK AV+IG SNIVG P A L
Sbjct: 125 PINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNA 183
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
ATVS+ H +TK+ TRQAD+II A G N++R +K G +++DVGIN +E K
Sbjct: 184 GATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESGK--- 240
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
+VGDV +EE + +S ITPVPGGVGP TIA LL NT+ SAK N
Sbjct: 241 ---IVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKNRLN 285
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 8/287 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGK+++K +++ + +V K + P L I+VG+ S TYV +K+KAC VGI+
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + LPE T+E E+L+ I N+D SVH ILVQLPLP HI++ +++ ++ EKDVDGFH
Sbjct: 66 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P N+GRL +R ++ L CTPKG + +L YG +G AVV+G SN+VG P + LL
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
ATV+ H T + + T +ADI+I AVG+PN + +K GAV+IDVGIN V+
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 239
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
++VGDV + + +AITPVPGGVGPMTI LL NT A+ ++
Sbjct: 240 --KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 284
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 187/287 (65%), Gaps = 9/287 (3%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
A V+DG+A+AKQI + + V +K G P LA ILVGD SATYVR K AC+ VG
Sbjct: 23 ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
++S ++ LP++T+ +++L I N +P VHGIL+Q P+P IDE++ +A+S+ KDVDG
Sbjct: 83 MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
L GR+AM E + TP G + +L +I GK AVV+GRS I+G P A++L
Sbjct: 143 VTCLGFGRMAM--GEAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLL 200
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
+ +ATV+I HSRT+N E+ +QADII+ AVG+ +++ WIK GAV++D G +P +
Sbjct: 201 QANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG- 259
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
VGD+ + E+ASA TPVPGGVGPMTI L+ T+ +A++
Sbjct: 260 ------VGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEK 300
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 172/292 (58%), Gaps = 19/292 (6%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSR---MKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQ 140
A ++DGKA RDEI G++ + DA G PGL ILVGD S YVR K C
Sbjct: 3 AIMLDGKAT----RDEIFGDLKQRVAALDAAGRTPGLGTILVGDDPGSQAYVRGKHADCA 58
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKD 200
VGI S LP D S + + I N +P G +VQLPLP H+DE + L V KD
Sbjct: 59 KVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKD 118
Query: 201 VDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAAL 260
DG HP N+GRL + PL PCTP+G + LL RY I G VVIGR VG P L
Sbjct: 119 ADGLHPTNLGRLVLGTPAPL--PCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGL 176
Query: 261 LLQR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
LL R E+ATV++ H+ T++ +TRQADI+++AVG +++ ++PGA +IDVG++
Sbjct: 177 LLTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRT 236
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
+D LVGDV + + E+A ++P PGGVGP+T A LL+N + A+R
Sbjct: 237 DDG-------LVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
K++ G+ +A++ + + G + R G+ P L +I +GD + ++ Y R K + + +GI
Sbjct: 2 KILRGEEIAEKKAENLHGIIERS----GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI 57
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
+ ++ +D S +++LK I DP ++GI+++ PLP D I+ + KDVD
Sbjct: 58 -AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDAL 116
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
P N G +A+ RE +P TP+ I+++ YG+ ++ RS +VG P +++L
Sbjct: 117 SPYNQGLIAL-NRE-FLVPATPRAVIDIMDYYGY--HENTVTIVNRSPVVGRPLSMMLLN 172
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
+ TVS+ HS+TK+ +TR + I++ AVG+P + + PG+V+IDVGIN V D
Sbjct: 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND---- 228
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
++VGD +E+ E AITPVPGGVGP+T +L N + +A+ N
Sbjct: 229 ---KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQKN 274
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 136/318 (42%), Gaps = 38/318 (11%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDA-IGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
+ I VA+ EI V K G P L L + + Y +K +S+G
Sbjct: 6 RTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
+++ + ED E + I N D SV+GI+V P+ + +Q + V EKDV+G
Sbjct: 66 F-RYDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 204 FHPL-------NIGRLAMRGREPLFIPCTPKGCI---ELLHRY------GFDIKGKRAVV 247
+ + N+ L R +PCTP + E L Y G + GK+ +V
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIV 182
Query: 248 IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS--WIK 305
I RS IVG P A LL + ATV V N ++ TR + ++ ++ S +K
Sbjct: 183 INRSEIVGRPLAALLANDGATVYSVD--VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLK 240
Query: 306 PGAVIIDVGIN--PVEDAKSPRGYRLVGDVCYEEAC---------EVASAITPVPGGVGP 354
++ DV I P E+ K P Y G VC AC E AS P+ G V
Sbjct: 241 KCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV-- 298
Query: 355 MTIAMLLSNTLTSAKRVH 372
TIAMLL N L + V
Sbjct: 299 -TIAMLLRNMLRLVRNVE 315
>pdb|1W8X|P Chain P, Structural Analysis Of Prd1
Length = 117
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 50 PASLRTTLTV--HSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVS 105
P + TL V ++SPSP+LP N SC A SA + G +A ++ D IT +++
Sbjct: 46 PQAGSVTLPVAGYTSPSPTLPNRNRSCGCNPA--VSAAMAQGADLASKLTDSITSQLN 101
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 272 VHSRTKNPEEI---TRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGIN 316
+H+R + E+ ++AD++I AV P +V S + KPGAV++D+ IN
Sbjct: 215 IHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIN 270
>pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|E Chain E, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|F Chain F, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|G Chain G, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
pdb|3TOX|I Chain I, Crystal Structure Of A Short Chain Dehydrogenase In
Complex With Nad(P) From Sinorhizobium Meliloti 1021
Length = 280
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP-EEITRQ 285
++GK A+V G S+ +G AALL RE A V +V +R N E+T +
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKV-VVTARNGNALAELTDE 51
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 286 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 285 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 317
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
G ++KPG +I V +P+E A++P G +V D+
Sbjct: 285 GQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 317
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL---PCHIDEQSILNAVSM 197
+ G +E H T E + L FND+ + I V LP+ P ++ EQ+ L A +
Sbjct: 501 TFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTAATN 560
Query: 198 EK 199
K
Sbjct: 561 AK 562
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL---PCHIDEQSILNAVSM 197
+ G +E H T E + L FND+ + I V LP+ P ++ EQ+ L A +
Sbjct: 501 TFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTAATN 560
Query: 198 EK 199
K
Sbjct: 561 AK 562
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL---PCHIDEQSILNAVSM 197
+ G +E H T E + L FND+ + I V LP+ P ++ EQ+ L A +
Sbjct: 501 TFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTAATN 560
Query: 198 EK 199
K
Sbjct: 561 AK 562
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL---PCHIDEQSILNAVSM 197
+ G +E H T E + L FND+ + I V LP+ P ++ EQ+ L A +
Sbjct: 501 TFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTAATN 560
Query: 198 EK 199
K
Sbjct: 561 AK 562
>pdb|3AFM|A Chain A, Crystal Structure Of Aldose Reductase A1-R Responsible For
Alginate Metabolism
pdb|3AFM|B Chain B, Crystal Structure Of Aldose Reductase A1-R Responsible For
Alginate Metabolism
pdb|3AFN|B Chain B, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|A Chain A, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|C Chain C, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|D Chain D, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
Length = 258
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI 282
D+KGKR ++ G S +G+ A L R A V + H R K P I
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGL-HGR-KAPANI 45
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 272 VHSRTKNPEEI---TRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGIN 316
+H+R + E+ ++AD++I AV P +V S + KPGAV++D+ I+
Sbjct: 215 IHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAID 270
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 272 VHSRTKNPEEI---TRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGIN 316
+H+R + E+ ++AD++I AV P +V S + KPGAV++D+ I+
Sbjct: 215 IHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAID 270
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 24/121 (19%)
Query: 57 LTVHSSPSPS-------LPVMNVSCSATMASEASAKV--------------IDGKAVAKQ 95
LT SP+P PV ++S A + + +A++ + + + K+
Sbjct: 61 LTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKK 120
Query: 96 IRDEITGEVSR--MKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPE 153
+ D I +SR KD + L + G + DS+ ACQ++G+ + L E
Sbjct: 121 VSDVIWNSLSRSYFKDR-AHIQSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSE 179
Query: 154 D 154
D
Sbjct: 180 D 180
>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3R1I|B Chain B, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
Length = 276
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG--- 294
FD+ GKRA++ G S +G AL A V++ ++ + + AD I G
Sbjct: 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVA---ARHSDALQVVADEIAGVGGKAL 84
Query: 295 -------QPNMVRG 301
QP+ VRG
Sbjct: 85 PIRCDVTQPDQVRG 98
>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|B Chain B, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|C Chain C, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|D Chain D, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|E Chain E, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|F Chain F, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|G Chain G, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|H Chain H, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|3VDR|A Chain A, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|B Chain B, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|C Chain C, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|D Chain D, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDQ|A Chain A, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|B Chain B, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|C Chain C, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|D Chain D, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
Length = 260
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
+KGK+AVV G ++ +G+ A L + A V I + PE+I R+ + S G
Sbjct: 2 LKGKKAVVTGSTSGIGLAMATELAKAGADVVI--NGFGQPEDIERERSTLESKFG 54
>pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|B Chain B, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|C Chain C, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
pdb|3AK4|D Chain D, Crystal Structure Of Nadh-Dependent Quinuclidinone
Reductase From Agrobacterium Tumefaciens
Length = 263
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 271
FD+ G++A+V G S +G A L + ATV+I
Sbjct: 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAI 41
>pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LUA|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
Length = 287
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
G +KGK+AVV+ + VGM +A LL E A V
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEV 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,660,917
Number of Sequences: 62578
Number of extensions: 429391
Number of successful extensions: 1147
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 40
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)