RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017184
(375 letters)
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 612 bits (1580), Expect = 0.0
Identities = 297/372 (79%), Positives = 321/372 (86%), Gaps = 8/372 (2%)
Query: 4 SRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSP 63
S++F DCSSSTT+RL+ F R G L RR VG + ++SS
Sbjct: 1 MASLMFTDCSSSTTSRLIHFNRISTPFNGTFLL--RRC-VGPLRVRTTASGRGCCINSSS 57
Query: 64 SPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVG 123
SPS PV+N A SE AKVIDGKAVAK+IRDEIT EVSRMK++IGVVPGLAVILVG
Sbjct: 58 SPS-PVIN----ADTGSEGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVG 112
Query: 124 DRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLP 183
DRKDSATYVRNKKKAC SVGINSFEV LPED++EQEVLK IS FN+DPSVHGILVQLPLP
Sbjct: 113 DRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLP 172
Query: 184 CHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGK 243
H+DEQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY +IKGK
Sbjct: 173 SHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGK 232
Query: 244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSW 303
RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITR+ADIIISAVGQPNMVRGSW
Sbjct: 233 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSW 292
Query: 304 IKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
IKPGAV+IDVGINPVEDA SPRGYRLVGDVCYEEAC+VASA+TPVPGGVGPMTIAMLLSN
Sbjct: 293 IKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSN 352
Query: 364 TLTSAKRVHNFQ 375
TLTSAKR+HNFQ
Sbjct: 353 TLTSAKRIHNFQ 364
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 458 bits (1179), Expect = e-162
Identities = 199/311 (63%), Positives = 239/311 (76%)
Query: 63 PSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILV 122
P +P + + +E VIDG +A++IR +I EV +MK A+G VPGLAV+LV
Sbjct: 35 PENWIPYSDPPPPVSFETEQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLV 94
Query: 123 GDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPL 182
G ++DS TYVRNK KAC+ GI S LPED +E ++L + FN+D S+HGILVQLPL
Sbjct: 95 GQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPL 154
Query: 183 PCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKG 242
P H+DE ILN V +EKDVDGFHPLN+G LAMRGREPLF+ CTPKGC+ELL R G +I G
Sbjct: 155 PQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAG 214
Query: 243 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGS 302
K AVVIGRSNIVG+P +LLLQR DATVS VH+ TK+PE+ITR+ADI+I+A G PN+VRGS
Sbjct: 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGS 274
Query: 303 WIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLS 362
W+KPGAV+IDVG PVED+ GYRLVGDVCYEEA VASAITPVPGGVGPMTI MLL
Sbjct: 275 WLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLC 334
Query: 363 NTLTSAKRVHN 373
NTL +AKR+
Sbjct: 335 NTLDAAKRIFL 345
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 430 bits (1106), Expect = e-152
Identities = 187/292 (64%), Positives = 230/292 (78%)
Query: 80 SEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKAC 139
S+ A++IDGKA+AK IR EI EV+++ + G VPGLAV++VG RKDS TYV K+KAC
Sbjct: 5 SDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKAC 64
Query: 140 QSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEK 199
VGI SF+V LPE+ SE E++ + N +P VHGILVQLPLP HI+E+ ILN +S+EK
Sbjct: 65 AEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEK 124
Query: 200 DVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA 259
DVDGFHPLNIG+LAM+GREPLF+PCTPKGC+ELL R G IKGK+AVV+GRSNIVG+P +
Sbjct: 125 DVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVS 184
Query: 260 LLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
LLL + DATV++VHSRT +PE I R+ADI+I+A GQ M++G WIKPGA +IDVG N V
Sbjct: 185 LLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS 244
Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
D GYRLVGDV + E +VA ITPVPGGVGPMT+AMLL NT+ AKRV
Sbjct: 245 DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRV 296
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 419 bits (1079), Expect = e-148
Identities = 162/289 (56%), Positives = 205/289 (70%), Gaps = 8/289 (2%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
+IDGKA+A++IR+E+ +V +K G PGLAVILVGD S YVR+KKKA + +GI
Sbjct: 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
S LPED +E+E+L I N DP V GILVQLPLP H+DEQ +L A+ EKDVDGF
Sbjct: 61 ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
HP N+G+LA EP F+PCTP G + LL YG D++GK VV+GRSNIVG P ALLL
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
+ATV++ HSRTK+ IT+ ADI++ AVG+P+ ++ +KPGAV+IDVGIN V D
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
+LVGDV ++ E ASAITPVPGGVGPMT+AMLL NTL +A+R
Sbjct: 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 398 bits (1025), Expect = e-140
Identities = 155/290 (53%), Positives = 202/290 (69%), Gaps = 9/290 (3%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
A +IDGK VAK+ R+++ EV ++K+ G+VPGLAVILVGD S +YVR KKKA + V
Sbjct: 2 MAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKV 60
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
GI S P D +E+E+L I N DP ++GILVQLPLP HIDE++++ +S EKDVD
Sbjct: 61 GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVD 120
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP+N+GR+ + + F+PCTP G +ELL Y DI GK VV+GRSNIVG P LL
Sbjct: 121 GFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLL 178
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
E+ATV+ HS+TKN E+T+QADI+I AVG+P ++ +K GAV+IDVG+N +E+ K
Sbjct: 179 LNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENGK 238
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
L GDV ++ E AS ITPVPGGVGPMTI ML+ NT+ AKR
Sbjct: 239 ------LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAG 282
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 396 bits (1020), Expect = e-139
Identities = 161/291 (55%), Positives = 204/291 (70%), Gaps = 3/291 (1%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
A +IDGKA A +R + EV+R+K A GV PGLAV+LVG+ S YVR+K K + G
Sbjct: 2 ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAG 61
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
+ SFE LP DTS+ E+L I+ N DP++HGILVQLPLP H+D ++++ A+ EKDVDG
Sbjct: 62 MASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDG 121
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
H +N GRLA E +PCTP GC+ LL R D+ G AVVIGRSN+VG P A LL
Sbjct: 122 LHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLL 179
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
+ATV+I HSRT++ + R+ADI+++AVG+P MV+G WIKPGA +IDVGIN + +
Sbjct: 180 AANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK 239
Query: 324 PRG-YRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
G RLVGDV + EA EVA AITPVPGGVGPMTIA LL+NTLT+A R
Sbjct: 240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 374 bits (962), Expect = e-130
Identities = 153/292 (52%), Positives = 190/292 (65%), Gaps = 8/292 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+AK+IDGK +A+Q+R E+ +V A PGLAV+LVG S YV +K+KAC+ V
Sbjct: 2 TAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEV 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G S LPE TSE E+L I N DP++ GILVQLPLP HID +L + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP N+GRLA R PL PCTP+G + LL RYG D G AVV+G SNIVG P +L L
Sbjct: 122 GFHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLEL 179
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
TV++ H TKN R AD+++ AVG+P + G WIKPGA++IDVGIN +ED K
Sbjct: 180 LLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDGK 239
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 374
LVGDV +E A E AS ITPVPGGVGPMT+A LL NTL + + H+
Sbjct: 240 ------LVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHDP 285
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 358 bits (921), Expect = e-124
Identities = 149/290 (51%), Positives = 196/290 (67%), Gaps = 4/290 (1%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
A ++DGKA+A +I + ++ G PGLAV+ VGD SA YVRNK+KAC VG
Sbjct: 2 ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVG 61
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
I SF HLP DTS+ EV I+ N D V GIL+QLPLP H+DE +L+A+ +KD DG
Sbjct: 62 IASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADG 121
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
HPLN+GRL ++G EP CTP G + LL DI GK+AVV+GRS +VG P AL+L
Sbjct: 122 LHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLL 179
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
+ATV+I HSRT++ ITR+ADI+++A G+PN++ +KPGAV++DVGI+ + S
Sbjct: 180 AANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPS--S 237
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
RL GDV +EE VA+AITPVPGGVGPMT+ MLL NT+ S ++ H
Sbjct: 238 DGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 358 bits (920), Expect = e-124
Identities = 149/291 (51%), Positives = 192/291 (65%), Gaps = 9/291 (3%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+A++IDG A++KQ+R E + + A G PGLAVILVGD S YVRNK KAC+
Sbjct: 2 TAQLIDGNALSKQLRAEAAQRAAALT-ARGHQPGLAVILVGDNPASQVYVRNKVKACEDN 60
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G +S + P D SE E+L I N DP +HGILVQLPLP HID ++ A++ EKDVD
Sbjct: 61 GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVD 120
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFH N G L M G +PLF PCTP G +++L G ++G AVVIGRSNIVG P A+LL
Sbjct: 121 GFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLL 178
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
+ ATV+I HS+T++ TRQADI+++AVG+ N++ +KPGA +IDVG+N + K
Sbjct: 179 LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAGK 238
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
L GDV + EVA ITPVPGGVGPMTI MLL NT+ +A+R
Sbjct: 239 ------LCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 351 bits (903), Expect = e-121
Identities = 158/292 (54%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGK V+ +++E+ V + G VPGL VI+VG+ S YVRNK K+C+ +G+N
Sbjct: 3 IIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMN 62
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + LP DT+E+ +LK I N+DP VHGILVQ PLP IDE ++ A+ KDVDGFH
Sbjct: 63 STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFH 122
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQR 264
P N+GRL M + F+ CTP G +ELL RY + KGK VV+GRSNIVG P A L+LQ+
Sbjct: 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQK 182
Query: 265 EDA---TVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
TV+I HS TK+ TRQADI+I+A+G+ + +KPGAV+IDVGIN +ED
Sbjct: 183 LKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDP 242
Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
+ GYRLVGDV YE ASAITPVPGGVGPMTIAMLL NTL S +RV+N
Sbjct: 243 STKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 348 bits (895), Expect = e-120
Identities = 148/287 (51%), Positives = 204/287 (71%), Gaps = 8/287 (2%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
++IDGKA+A++++ E+ +V+++K+ G+VPGL VILVGD S YVRNK+++ + G
Sbjct: 2 TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
S V LPE S++E+L I +N DP+ HGILVQLPLP HI+E+ IL A+ +KDVDG
Sbjct: 62 FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
FHP+N G L GR P+ IPCTP G +E+ Y +++GK AVVIGRSNIVG P A LL
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
++ATV++ HSRT+N E+ R+ADI++ A+G+ + V ++K GAV+IDVG+N E+ K
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENGK- 238
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
L+GDV ++E EVAS ITPVPGGVGPMTI ML+ T +A R
Sbjct: 239 -----LIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 338 bits (868), Expect = e-116
Identities = 135/285 (47%), Positives = 182/285 (63%), Gaps = 8/285 (2%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
++DGKA++ +I ++ ++ + G P LAVILVG S TYV K KAC+ VG+
Sbjct: 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
+S L E+T+E E+L I N D ++ GILVQLPLP HID + +L A+ KDVDGF
Sbjct: 62 DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
HPLNIG+L + F+P TP G + LL Y +IKGK V+IG SNIVG P A+L+
Sbjct: 122 HPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
A+VS+ H TK+ T+ ADI+ VG+P++++ S +K GAV++D+GIN + D
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
RLVGDV +E AS ITPVPGGVGPMTI LL NTL +A+
Sbjct: 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAE 278
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 318 bits (817), Expect = e-108
Identities = 145/289 (50%), Positives = 193/289 (66%), Gaps = 8/289 (2%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
++IDG AVA QIRD++T + ++DA GV PGLA +L+ D S TYV K++ C+ VG
Sbjct: 2 TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
I + +V + D +E+ I N D VHGILVQ+P+P H+D++ +L + KDVDG
Sbjct: 61 IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLL 262
FHP N+GRL + F PCTP G +LL G D +G VV+GRS+IVG P A LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178
Query: 263 QRED---ATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
Q+ D ATV++ HSRT + TR+ADI+++A G P ++ GS + GA +IDVGIN V
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV- 237
Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA 368
DA + +GY LVGDV +E A E ASAITPVPGGVGPMT AMLL NT+ +A
Sbjct: 238 DADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 317 bits (813), Expect = e-107
Identities = 153/294 (52%), Positives = 202/294 (68%), Gaps = 6/294 (2%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 141
SAK+IDGKA A ++ ++ +V +K A G+ P LAVILVG+ S YVRNK +
Sbjct: 2 MSAKLIDGKAAAARVLAQVREDVRTLK-AAGIEPALAVILVGNDPASQVYVRNKILRAEE 60
Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
GI S E LP DTS+ +L I+ N DPSV+GIL+QLPLP HIDE +L A++ KDV
Sbjct: 61 AGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDV 120
Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
DGFH N+G L+ +GR+ L PCTP GC+ LL D+ GK AVVIGRSNIVG P A L
Sbjct: 121 DGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAAL 178
Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
L + +V++VHSR+ + + + RQADI+++AVG+P ++ W+KPGAV+IDVGIN ++D
Sbjct: 179 LLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD 238
Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
RLVGDV ++ A V SAITPVPGGVGPMTIA L+ NT+T+A+ + Q
Sbjct: 239 GRS---RLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQ 289
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 315 bits (810), Expect = e-107
Identities = 146/288 (50%), Positives = 186/288 (64%), Gaps = 13/288 (4%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++DGKA A IR+E+ EV+ + G PGLAVILVG+ S YVRNK++AC+ GI
Sbjct: 3 LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S LP DT+++E+ I+ N P + GIL+QLPLP +D Q L + KDVDGFH
Sbjct: 63 SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P N+GRLA+ P F PCTP G + LL RYG GK+AVV+GRSNIVG P AL+L
Sbjct: 123 PENMGRLAL--GLPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180
Query: 266 ----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
+ATV++ HSRT + E R+AD + A+G+P V +KPGAV++DVGIN +D
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240
Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
LVGD +E +VASAITPVPGGVGPMTIA LL NT+ S K
Sbjct: 241 -------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 311 bits (799), Expect = e-105
Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
+++DGKA++ +I++ + EV +K +VPGLAVILVGD S TYV+ K KAC VGI
Sbjct: 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
S +P S++E+L+ I++ N++P++ GILVQLPLP HID IL A+ +KDVDGF
Sbjct: 62 YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
HP N+GRL + G + F+PCTP G +ELL Y D+KGK V+G SNIVG P A LL
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
+ATV I H TK+ + T++ADI+I VG+PN++ +K GA++ID+GIN ED
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
RLVGDV +E + S ITPVPGGVGPMTIAMLLSNTL +AK
Sbjct: 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 309 bits (792), Expect = e-104
Identities = 146/291 (50%), Positives = 198/291 (68%), Gaps = 4/291 (1%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
SAK+I G + ++I +EI GEV+ +K+ G VPGL ILVG+ S +YV K K +
Sbjct: 2 SAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRL 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G + + + D +E+E+L I +N+D S+HGILVQLPLP HI+E+ +LNA+ +KDVD
Sbjct: 62 GFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP+N+GRL + G E F+PCTP G E+L R G + G VV+GRSNIVG P A ++
Sbjct: 122 GFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMM 181
Query: 263 QRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
++ +ATV+IVH+R+KN ++ADI+I A G PN+V+ WIKPGA +IDVG+N V
Sbjct: 182 TQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
+S L GDV ++ E+A ITPVPGGVGPMTIAML+ NTL SAK
Sbjct: 242 GTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAK 292
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 307 bits (788), Expect = e-104
Identities = 145/287 (50%), Positives = 198/287 (68%), Gaps = 9/287 (3%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
AK++DGK +AK R + +V +K G P L+VILVG+ S +YVR+KKKA + +G
Sbjct: 3 AKILDGKQIAKDYRQGLQDQVEALK-EKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
+ S VHL E +E+EVL ++ N+D SV GILVQ+PLP + EQ IL A++ EKDVDG
Sbjct: 62 MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
FHP+NIG+L + E F+PCTP G +E+L D++GK AVVIGRS+IVG P + LL
Sbjct: 122 FHPINIGKLYI--DEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
+++A+V+I+HSR+K+ + AD+I+SAVG+P +V +K GAVIIDVG P E+ K
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGK- 238
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
L GDV Y+ E+A AITPVPGGVGP+TI M+L+NTL + K
Sbjct: 239 -----LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 307 bits (788), Expect = e-104
Identities = 140/292 (47%), Positives = 191/292 (65%), Gaps = 6/292 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGK +A I + + + +K + P L VILVGD S YVRNK++ + +G+
Sbjct: 4 IIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLR 63
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + LP SE +++ I+ N+D SVHGILVQLP+P HID+ I+N + EKDVDGFH
Sbjct: 64 SETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFH 123
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
N+GRL ++ IPCTPKGC+ L+ ++ G AVVIGRSNIVG P A LL E
Sbjct: 124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGE 183
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
+ TV+ VHS T++ + +ADI+++AVG PN V+ SWIK GA++IDVGIN +E+
Sbjct: 184 NCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGVK- 242
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA---KRVHNF 374
+ VGDV + E + ASAITPVPGGVGPMTIA L+ NT+ +A K + +F
Sbjct: 243 --KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQKGIDDF 292
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 307 bits (787), Expect = e-103
Identities = 139/291 (47%), Positives = 187/291 (64%), Gaps = 6/291 (2%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
++IDGKA++ QI+ EI EV+ + G P LA ILVG S TYV NK KAC+ G
Sbjct: 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
S + D +E+E+L + N D V G +VQLPLP HI EQ ++ A+ KDVDGF
Sbjct: 62 KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQ 263
HP+N+GR+++ P F+ TP G +ELL RY + GK+ VV+GRSNIVG P A L++Q
Sbjct: 122 HPINVGRMSI--GLPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179
Query: 264 RE---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
+ D TV++ HSR+KN ++ +ADIII+A+GQP V+ +K GAV+IDVG V D
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239
Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
A G++L GDV ++E S ITPVPGGVGPMTI L+ NTL + K+
Sbjct: 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 306 bits (785), Expect = e-103
Identities = 138/293 (47%), Positives = 187/293 (63%), Gaps = 9/293 (3%)
Query: 78 MASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKK 137
M +++IDGKA+AK+I E+ V R+K G+ PGLA ILVGD S YVR K K
Sbjct: 2 MDESYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHK 61
Query: 138 ACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM 197
AC+ VGI + + LP DT+++E+L+ I N VHGIL+QLPLP H+D Q + A+
Sbjct: 62 ACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121
Query: 198 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 257
KD DGFHP N+G+L M G E +PCTP G I L YG DI+GK AV++G SN+VG P
Sbjct: 122 AKDADGFHPYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKP 179
Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 317
A +L +ATVS+ H T + ++ T ADI++ A G ++++ +K GAVI DVGI
Sbjct: 180 MAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITK 239
Query: 318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
ED ++ GDV +E + AS ITPVPGGVGP+TIAML+ + L A++
Sbjct: 240 EED-------KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEK 285
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 304 bits (780), Expect = e-102
Identities = 127/293 (43%), Positives = 180/293 (61%), Gaps = 12/293 (4%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+A ++DGKA A +I+ ++ V+ +K+ G+ PGL +LVGD S YVR K + C V
Sbjct: 2 TAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEV 60
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
GI S LP D +++E+ I N DP+ G +VQLPLP H+DE ++L + KD D
Sbjct: 61 GITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDAD 120
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
G HP N+GRL + PL PCTP+G + LL RY ++ G VVIGR VG P LLL
Sbjct: 121 GLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLL 178
Query: 263 QR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
R E+ATV++ H+ T++ TR+ADII++A G ++V +KPGA ++DVG++ D
Sbjct: 179 TRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD 238
Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
+LVGDV + + EVA A++P PGGVGPMT A LL+N + A+R
Sbjct: 239 ------GKLVGDV-HPDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 293 bits (752), Expect = 2e-98
Identities = 147/288 (51%), Positives = 208/288 (72%), Gaps = 9/288 (3%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
++IDGK +AK+I++++T EV+ + G PGLAV+LVGD + S TYVRNK+K + G
Sbjct: 2 GEIIDGKKLAKEIQEKVTREVAELVK-EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAG 60
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
+ S + LPE+ +E+++L + N+D ++HGILVQLPLP HI E+ +++ +S +KDVDG
Sbjct: 61 MKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDG 120
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
FHP+N+G L + G++ F+PCTP G IEL+ G I+GKRAVVIGRSNIVG P A LL
Sbjct: 121 FHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLL 178
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
E+ATV+I HSRTK+ ++ ++ADI++ A G V+ +IKPGA++IDVG++ E+ K
Sbjct: 179 NENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENNK- 237
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
L GDV +++ E A ITPVPGGVGPMTI MLL+NTL +AKR+
Sbjct: 238 -----LCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRI 280
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 289 bits (740), Expect = 1e-96
Identities = 140/284 (49%), Positives = 185/284 (65%), Gaps = 13/284 (4%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++DGKAV+++ + + E+ G+ P LA ++VGD S YVR K +AC+ VGI
Sbjct: 2 ILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIG 57
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + LP D + + VL+ I N+DP ++GILVQLPLP +D + ++ A+ EKDVDGFH
Sbjct: 58 SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFH 117
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
PLN+GRL + G P F PCTP G + LLH Y I GKRAVV+GRS VG P A LL
Sbjct: 118 PLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA 175
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
DATV+I HS+T+N + RQADI++SA G+ + +KPGA +IDVGIN V
Sbjct: 176 DATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG----- 230
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
+L GDV ++ E+A AITPVPGGVGPMTIA L+ NT +AK
Sbjct: 231 --KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 284 bits (729), Expect = 1e-96
Identities = 108/172 (62%), Positives = 133/172 (77%), Gaps = 5/172 (2%)
Query: 198 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 257
EKDVDG HP+N+GRLA+ P FIPCTP G +ELL RYG D+ GK+ VV+GRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 317
A LL +ATV++ HS+TKN +E T+QADI+I AVG+P +V+G +KPGAV+IDVGIN
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 318 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
V D G +LVGDV +E A E ASAITPVPGGVGPMT+AML+ NT+ +AK
Sbjct: 120 VPD---KSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 288 bits (738), Expect = 2e-96
Identities = 135/289 (46%), Positives = 190/289 (65%), Gaps = 9/289 (3%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 141
A V+DGKA+AKQI +E++ V +K G P LA ILVGD SATYVR K AC+
Sbjct: 1 MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRR 60
Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
VG++S +V LP++T+ +++L I N +P VHGIL+Q P+P IDE++ +A+S+ KDV
Sbjct: 61 VGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDV 120
Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
DG L GR+AM E + TP G + LL Y ++ GK AVV+GRS I+G P A++
Sbjct: 121 DGVTCLGFGRMAM--GEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMM 178
Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
L +ATV+I HSRT+N E+ +QADII+ AVG+P +++ WIK GAV++D G +P +
Sbjct: 179 LLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGG 238
Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
VGD+ + E+ASA TPVPGGVGPMTI L+ T+ +A++
Sbjct: 239 G-------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEK 280
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 286 bits (734), Expect = 8e-96
Identities = 145/284 (51%), Positives = 193/284 (67%), Gaps = 8/284 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++DGKA++ +I++E+ + +K G+ LAVILVGD S TYV++K KAC+ GI
Sbjct: 3 LLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIK 61
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S HL E+T++ E+L I+ N D SVHGILVQLPLP HI + IL ++ KDVDGFH
Sbjct: 62 SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH 121
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P+N+G L + G E F+PCTP G ++LL Y D++GK AV+IG SNIVG P A +L
Sbjct: 122 PINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA 180
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
ATVS+ H +TK+ TRQAD+II A G N++R +K G +++DVGIN +E K
Sbjct: 181 GATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESGK--- 237
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
+VGDV +EE + +S ITPVPGGVGPMTIAMLL NT+ SAK
Sbjct: 238 ---IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAK 278
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 280 bits (720), Expect = 2e-95
Identities = 101/166 (60%), Positives = 127/166 (76%), Gaps = 8/166 (4%)
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
HP+N+GRL + EP F+PCTP+G +ELL RYG D+ GK VVIGRSNIVG P ALLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
+ATV++ HS+TK+ EITR+ADI++ AVG+P +++ W+KPGAV+IDVGIN VE
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
+LVGDV +E E ASAITPVPGGVGPMT+AMLL NT+ +AKR
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 285 bits (730), Expect = 4e-95
Identities = 138/288 (47%), Positives = 193/288 (67%), Gaps = 9/288 (3%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+A+ + G A+ + E+ ++++ VP L V+ +G+ S +YVR K + +++
Sbjct: 2 AARELSGPPAAEAVYAELRARLAKLPF----VPHLRVVRLGEDPASVSYVRLKDRQAKAL 57
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G+ S LPE TS++E+L+ I+ N DP V GILVQLPLP HID Q +L A+ KDVD
Sbjct: 58 GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVD 117
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHPLN+GRL M G E L PCTP G + LL YG + GK VV+GRSNIVG P A LL
Sbjct: 118 GFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALL 175
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
REDATV++ HS+T++ +TR+AD+++ AVG+P+++ ++PGAV++DVGIN V
Sbjct: 176 LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNG 235
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
L GDV + E EVA A+TPVPGGVGPMT+AML++NT+ +A R
Sbjct: 236 GRD--ILTGDV-HPEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALR 280
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 283 bits (726), Expect = 1e-94
Identities = 116/279 (41%), Positives = 177/279 (63%), Gaps = 9/279 (3%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
++I+GK VA +I++EI V K+ +P +A ILVG+ S Y+ N++K S+GI
Sbjct: 3 QIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGI 62
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
+ ++ L E SE++++ I N D +VHGI++QLPLP H+DE+ I N + KD+D
Sbjct: 63 DFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCL 122
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
+++G+ E F+PCTP I L+ DI+GK VVIGRSNIVG P A LL
Sbjct: 123 TFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN 180
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
E+ATV+I HS+TKN +E+ ++ADI++ A+G+P + ++K GA++IDVG + V
Sbjct: 181 ENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG---- 236
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 363
++ GDV +++ + AS ITPVPGGVG +T +L+ N
Sbjct: 237 ---KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKN 272
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 276 bits (706), Expect = 1e-91
Identities = 147/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGK +A +++ E+ EV + A GV GL V+ VGD SA YVR K+K C+ VGI
Sbjct: 3 LIDGKQIAAKVKGEVATEVRALA-ARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S E HLP T++ E+L I+ N DP+VHGILVQLPLP H+DE+++L+A+S KD DGFH
Sbjct: 62 SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P N+G L++ G + PCTP G + +L D KGKRA+V+GRSNIVG P A++L
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
ATV+I HSRT + +ADI+++A+G+ +V+G+W+K GAV+IDVG+N + D
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
+LVGDV + A ASAITPVPGGVGPMT AMLL NT+ AKR
Sbjct: 237 --KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 276 bits (706), Expect = 1e-91
Identities = 134/287 (46%), Positives = 191/287 (66%), Gaps = 9/287 (3%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 143
A +DG+AV+K+I ++ V+++ V P LAV+LVG S YVRNK++ + +G
Sbjct: 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59
Query: 144 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 203
+ S LPE T++ ++L ++ N DP V ILVQLPLP +DEQ++++A+ +KDVDG
Sbjct: 60 VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119
Query: 204 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 263
F P+++GRL EP + TP G + LL Y D+ GKR V++GRSNIVG P A L+
Sbjct: 120 FSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177
Query: 264 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 323
DATV+I HS+T+N +++T++ADI++ AVG P+ + +KPGAV+IDVGI+ D K
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADGK- 236
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
L+GDV +ASAITPVPGGVGPMTIA L++ T+T AKR
Sbjct: 237 -----LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 266 bits (682), Expect = 6e-88
Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 8/287 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGK+++K +++ + +V K + P L I+VG+ S TYV +K+KAC VGI+
Sbjct: 3 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 62
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + LPE T+E E+L+ I N+D SVH ILVQLPLP HI++ +++ ++ EKDVDGFH
Sbjct: 63 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 122
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
P N+GRL +R ++ L CTPKG + +L YG +G AVV+G SN+VG P + LL
Sbjct: 123 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 181
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
ATV+ H T + + T +ADI+I AVG+PN + +K GAV+IDVGIN V+
Sbjct: 182 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 236
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
++VGDV + + +AITPVPGGVGPMTI LL NT A+ ++
Sbjct: 237 --KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 281
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 264 bits (677), Expect = 4e-87
Identities = 136/289 (47%), Positives = 184/289 (63%), Gaps = 10/289 (3%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++ G A+ I I +S A PGLAV+L+G+ S YV K K +G+
Sbjct: 2 LLKGAPAAEHILATIKENISASSTA----PGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S LP D + ++LK I N+DP++HGILVQLPLP H+D Q+IL A+S +KDVDG H
Sbjct: 58 SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQR 264
P+N+G+L + G FIPCTP G IELL Y + G+ ++GRSNIVG P AALL+Q+
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176
Query: 265 E---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 321
+ATV+++HS+++N EI + ADIII+A+G P ++ I AVI+DVG + V A
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP-A 235
Query: 322 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
+P+GY LVGDV + AITPVPGGVGPMT+AML+ NT S R
Sbjct: 236 ANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 256 bits (656), Expect = 6e-84
Identities = 123/284 (43%), Positives = 178/284 (62%), Gaps = 7/284 (2%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
+IDGKA+A +I ++ E+ +K P LA++LVGD S YV+NK K +GI+
Sbjct: 4 IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
+ V+L +++ I+ N D + GI+VQLPLP ID+ IL+AVS KD+DGFH
Sbjct: 64 TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
PLN+G L G FIPCT GC+ ++ +Y ++ GK V+IGRSNIVG P + LL +E
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
+ +V+I HS+T N IT +ADI+++A+G P + + P +++IDVGIN +
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS------ 236
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
G +++GDV +E ITPVPGG+GPMTIA LL NT+ + K
Sbjct: 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFK 280
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 254 bits (650), Expect = 4e-83
Identities = 132/284 (46%), Positives = 182/284 (64%), Gaps = 12/284 (4%)
Query: 86 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 145
++DGK ++++IR+EI + K +P LA ILVG+ S TYV K KAC VG+
Sbjct: 5 LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64
Query: 146 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 205
S + L E T+ +E+L I N DP+V GIL+Q P+P IDE++ + +++EKDVDG
Sbjct: 65 SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124
Query: 206 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 265
L+ G+L+M G E ++PCTP G + LL YG D+ GK AVV+GRS I+G P A+LL
Sbjct: 125 TLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182
Query: 266 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 325
+ATV++ HS+T+N I RQADII+ AVG+P ++ WI GAV++D G NP
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGN------ 236
Query: 326 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
VGD+ +A + +S TPVPGGVGPMTIA+LL TL S K
Sbjct: 237 ----VGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFK 276
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 175 bits (446), Expect = 1e-54
Identities = 68/118 (57%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
K++DGKA+AK+I++E+ EV+++K G+ P LAVILVGD S YVR+K+KA + +GI
Sbjct: 1 KILDGKALAKKIKEELKEEVAKLK-EKGITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
S + LPED +E+E+L I N DPSVHGILVQLPLP HIDE ILNA+ EKDVD
Sbjct: 60 ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 123 bits (309), Expect = 4e-34
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 222 IPCTPKGC-------IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 274
PCTP ELL++ G + GK+ +V+GRS IVG P LLQR+ ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 275 RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVC 334
+T + AD+++ +P V WIKPGA +I+ +
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPT---------------KLS 105
Query: 335 YEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 369
++ E AS P+ GGVG +T+AM + N + S +
Sbjct: 106 GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 77.9 bits (192), Expect = 6e-17
Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 58/207 (28%)
Query: 198 EKDVDGFHPL-------NIGRLAMRGREPLFIPCTPKGCIELLH---------RYGFDIK 241
KDV+G NI L R+ +PCTP +++L YG +
Sbjct: 2 HKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLY 61
Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATV-SI--------------------VHSRTKNPE 280
GK +I RS +VG P A LL + A V S+ V
Sbjct: 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTL 121
Query: 281 EITRQADIIISAVGQPNM-VRGSWIKPGAVIIDV-GINPVEDAKSPRGYRLVGDVCYEEA 338
+ Q+D++I+ V PN V +K GA+ I+ I E
Sbjct: 122 DCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEP----------------SV 165
Query: 339 CEVASAITPVPGGVGPMTIAMLLSNTL 365
E AS P +G +TIAMLL N L
Sbjct: 166 KEKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 44.3 bits (105), Expect = 3e-06
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 224 CTPKGCIELLHRYGF----DIKGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTKN 278
T G + LL G +KGK VV+G VG A LL V +
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR---- 55
Query: 279 PEEITRQADIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI+++A V + I GAV+ID+
Sbjct: 56 --------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 37.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 267 ATVSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI- 315
A + ++S+ + EE ++AD++I AV P MV+ +KPG+VI+DV
Sbjct: 65 ARFTTLYSQAELLEEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVIVDVAAD 122
Query: 316 --NPVEDAK 322
+E ++
Sbjct: 123 QGGCIETSR 131
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 38.5 bits (91), Expect = 0.004
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 12/57 (21%)
Query: 269 VSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI 315
V+ ++S N EE ++AD++I AV P MV+ +KPG+VI+DV I
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAVLIPGAKAPKLVTEEMVK--TMKPGSVIVDVAI 269
>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
tetrahydromethanopterin dehydrogenase. Methylene
Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
binding domain. NADP-dependent H4MPT DH catalyzes the
dehydrogenation of methylene- H4MPT and
methylene-tetrahydrofolate (H4F) with NADP+ as cofactor.
H4F and H4MPT are both cofactors that carry the
one-carbon units between the formyl and methyl oxidation
level. H4F and H4MPT are structurally analogous to each
other with respect to the pterin moiety, but each has
distinct side chain. H4MPT is present only in anaerobic
methanogenic archaea and aerobic methylotrophic
proteobacteria. H4MPT seems to have evolved
independently from H4F and functions as a distinct
carrier in C1 metabolism. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 194
Score = 37.0 bits (86), Expect = 0.007
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 31/115 (26%)
Query: 233 LHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT--------- 283
L G D+KGK AVV+G + VG AA+LL RE A V +V R +
Sbjct: 19 LELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRDLERAQKAADSLRARFG 77
Query: 284 ------------------RQADIII--SAVGQPNMVRGSW-IKPGAVIIDVGINP 317
+ AD++ A G + + +W KP AV DV P
Sbjct: 78 EGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVP 132
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 1. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
assimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 227
Score = 37.1 bits (87), Expect = 0.009
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 228 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
E L + G + G R + G N VG AA L A V
Sbjct: 17 ATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKV 57
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 36.8 bits (86), Expect = 0.015
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPN-MVRGSWIKPGA 308
A L Q DA V + E RQADII A +VRG W+KPG
Sbjct: 168 AELRAQGFDAEVV------TDLEAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 34.9 bits (81), Expect = 0.024
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 37/123 (30%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + L G ++KGK+ +++G R+ L + A + IV +RT
Sbjct: 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYA-----LAELGAAKIVIV-NRTLEKAKA 58
Query: 278 ---------------NPEEITRQADIIISAV-----GQPNM-VRGSWIKPGAVIIDVGIN 316
+ EE+ +AD+II+ + + S +KPG V+ DV N
Sbjct: 59 LAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN 118
Query: 317 PVE 319
P+E
Sbjct: 119 PLE 121
>gnl|CDD|72716 pfam09301, DUF1970, Domain of unknown function (DUF1970). Members
of this family consist of various uncharacterized viral
hypothetical proteins.
Length = 117
Score = 34.0 bits (77), Expect = 0.031
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 50 PASLRTTLTV--HSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVS 105
P + TL V ++SPS +LP N SC A SA + G +A ++ D IT +++
Sbjct: 46 PQAGSVTLPVAGYTSPSLTLPNRNRSCGCNPA--VSAAMAQGADLASKLTDSITSQLN 101
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 35.8 bits (83), Expect = 0.034
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 30/105 (28%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSI------------------VHSRTKNP-- 279
+ + VV+G +VG AA + A V+I VH+ P
Sbjct: 166 VLPAKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN 224
Query: 280 -EEITRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGI 315
EE ++AD++I AV P +V + KPG+VI+DV I
Sbjct: 225 IEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific
2-hydroxy acid dehydrogenases and related
dehydrogenases. The formate/glycerate dehydrogenase
like family contains a diverse group of enzymes such as
formate dehydrogenase (FDH), glycerate dehydrogenase
(GDH), D-lactate dehydrogenase, L-alanine dehydrogenase,
and S-Adenosylhomocysteine hydrolase, that share a
common 2-domain structure. Despite often low sequence
identity, these proteins typically have a characteristic
arrangement of 2 similar domains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD(P) binding
domain is inserted within the linear sequence of the
mostly N-terminal catalytic domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD(P) is bound, primarily to
the C-terminal portion of the 2nd (internal) domain.
While many members of this family are dimeric, alanine
DH is hexameric and phosphoglycerate DH is tetrameric.
2-hydroxyacid dehydrogenases are enzymes that catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate dehydrogenase (FDH) catalyzes the NAD+-dependent
oxidation of formate ion to carbon dioxide with the
concomitant reduction of NAD+ to NADH. FDHs of this
family contain no metal ions or prosthetic groups.
Catalysis occurs though direct transfer of a hydride ion
to NAD+ without the stages of acid-base catalysis
typically found in related dehydrogenases.
Length = 310
Score = 34.5 bits (79), Expect = 0.062
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE--------------EITR 284
D+ GK VV+G + +VG AA +L+ A V I + E E
Sbjct: 157 DVAGKTVVVVG-AGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALA 215
Query: 285 QADIIISAVGQPNMVRGSWI--------KPGAVIIDVGINPVEDAKSPRGYRLVG 331
+AD+I++ P G + KPG+VI++V + V ++ L
Sbjct: 216 EADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEE 270
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 34.3 bits (79), Expect = 0.074
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 235 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
R D+ GKR ++ G S+ +G AA R ATV V R + + AD I A G
Sbjct: 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV---ADRITRAGG 89
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 33.5 bits (77), Expect = 0.15
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 268 TVSIVHSRTKNPEEITRQADIIISA----VGQPN---MVRGSWIKPGAVIIDVGINPVED 320
V +V S EE+ R +DI+ G P+ V+ W+KPGA ++ +++
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 321 AKSPRGYRLVGD------VCYEEACEVASAITPVPGG 351
R V D +EE + A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 33.4 bits (77), Expect = 0.17
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP---------- 279
+EL R +K K+ +VIG + G A L + + +RT
Sbjct: 166 VELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224
Query: 280 -----EEIT---RQADIIISAVGQP-------NMVRGSWIKPGAVIIDVGINP 317
EE+ +AD++IS+ P + R I+ +I+D+ P
Sbjct: 225 EAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA-VP 276
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
aka Hydroxypyruvate Reductase) and other enzymes of the
2-hydroxyacid dehydrogenase family. GDH catalyzes the
reversible reaction of (R)-glycerate + NAD+ to
hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 315
Score = 33.0 bits (76), Expect = 0.21
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------------EEITR 284
G ++ GK ++G I G+ A L + V + +SR++ +E+
Sbjct: 139 GRELAGKTVGIVGTGAI-GLRVARLFKAFGCKV-LAYSRSEKEEAKALGIEYVSLDELLA 196
Query: 285 QADIIISAVGQPNMVRG-------SWIKPGAVIIDVGINPVEDAK 322
++DI+ + + +G + +K A++I+ PV D +
Sbjct: 197 ESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNE 241
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 33.3 bits (76), Expect = 0.21
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK 277
++KGK VIG N M AA +R V+IV+ RTK
Sbjct: 444 EVKGKEVFVIGGGN-TAMDAARTAKRLGGNVTIVYRRTK 481
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 32.9 bits (76), Expect = 0.22
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 38/114 (33%)
Query: 232 LLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK--------- 277
L R G D+KGKR +++G R+ I+ LL A ++IV +RT
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILP-----LLDLGVAEITIV-NRTVERAEELAKL 166
Query: 278 -----------NPEEITRQADIIISA--VG-QPNMVRG----SWIKPGAVIIDV 313
+E D+II+A G + S ++PG ++ D+
Sbjct: 167 FGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM 220
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino
acid transport and metabolism].
Length = 411
Score = 33.0 bits (76), Expect = 0.22
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 215 RGREPLFIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
GR T G E L G D++G R V G N VG AA L A V
Sbjct: 180 LGRSE----ATGYGVFYAIREALKALGDDLEGARVAVQGFGN-VGQYAAEKLHELGAKV 233
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 32.0 bits (74), Expect = 0.24
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 52/139 (37%)
Query: 255 GMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQPNMV 299
G P AL L + TV+ V++RT +P E AD++I+ V V
Sbjct: 12 GSPMALNLLKAGYTVT-VYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAV 70
Query: 300 RGSW---------IKPGAVIIDVG-INPVEDAK------SPRGYRLVGDVCYEEACEVAS 343
+KPG +IID +P +D + + +G +
Sbjct: 71 DAVILGEDGLLPGLKPGDIIIDGSTSDP-DDTRRRAKELAEKGIHFLD------------ 117
Query: 344 AITPVPGGV-----GPMTI 357
PV GG G ++I
Sbjct: 118 --APVSGGEEGAEAGTLSI 134
>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.
Length = 261
Score = 32.8 bits (75), Expect = 0.25
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSI-VHSRTKNPEEITRQADIIISAVGQPN 297
D++GK V+ G S +G A+ +E A V I S + ++ A+ I A G+
Sbjct: 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDV---AEEIKKAGGEAI 60
Query: 298 MVRG 301
V+G
Sbjct: 61 AVKG 64
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 32.7 bits (75), Expect = 0.28
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 274 SRTKNPEEITRQADIIISA-VGQPNMVRGSWIKPGAVIIDVGINPVE 319
+ EE ADI+++A +++ W+KPG I +G +
Sbjct: 184 GAADSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADAPG 230
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 32.6 bits (74), Expect = 0.30
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 261 LLQREDATVSIVHSRTKNPEEI---TRQADIIISAV-----GQPNMVRGSWI---KPGAV 309
L Q + +H+R N EI ++AD++I AV P +V S + KPGAV
Sbjct: 203 LRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAV 262
Query: 310 IIDVGINP---VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNT 364
I+DV I+ VE ++ P + Y V + +PG V P T L+N
Sbjct: 263 IVDVAIDQGGCVETSR-PTTH---DQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNA 315
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism
/ General function prediction only].
Length = 324
Score = 31.8 bits (73), Expect = 0.46
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 26/106 (24%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE---------- 280
GFD++GK +IG I G A L+ V + + R+ NPE
Sbjct: 135 GPDPLLGFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKV-LYYDRSPNPEAEKELGARYV 192
Query: 281 ---EITRQADIIISAVGQP------NMV---RGSWIKPGAVIIDVG 314
E+ ++DII P +++ + +KPGA++++
Sbjct: 193 DLDELLAESDIISLHC--PLTPETRHLINAEELAKMKPGAILVNTA 236
>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional.
Length = 253
Score = 31.9 bits (72), Expect = 0.49
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISA----- 292
FD+ GKRA++ G S +G AL A V+I ++ + + + AD I ++
Sbjct: 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIA---ARHLDALEKLADEIGTSGGKVV 61
Query: 293 -----VGQPNMVRG 301
V Q V
Sbjct: 62 PVCCDVSQHQQVTS 75
>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 426
Score = 31.4 bits (72), Expect = 0.70
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-------------RTKNPEEITRQA 286
I GK AVV G + VG A L+ + A V + EE+ QA
Sbjct: 205 IAGKVAVVCGYGD-VGKGCAQSLRGQGARVIVTEIDPICALQAAMDGFEVVTMEEVAPQA 263
Query: 287 DIIISAVGQPNMVRGSWI---KPGAVIIDVG 314
DI ++ G +++ + K GA++ ++G
Sbjct: 264 DIFVTTTGNKDVITREHMRAMKDGAIVCNIG 294
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 31.0 bits (71), Expect = 0.86
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 278 NPEEITRQADIIISAVGQPNMVRG---------SWIKPGAVIIDVGINPVEDAK 322
+P E +AD++I+ + VR +KPGA++ID+ E A+
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAR 103
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 31.2 bits (71), Expect = 0.93
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPN--MVRGSWIKPGAVIIDVGIN 316
A LQ + + EE ADI+++ +++ W+KPG I VG +
Sbjct: 171 ARNLQEPGFEIVAC----TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGAD 226
Query: 317 PVEDAKSPRGYRLVGDVCYE 336
+ L D+ +
Sbjct: 227 CPGKTELDPDILLRADIFVD 246
>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 253
Score = 30.8 bits (70), Expect = 1.0
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG-QPNMV 299
GK A++ G S+ +G A+L R A +++ + EE TRQ+ + + +V
Sbjct: 2 SGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEE-TRQSCLQAGVSEKKILLV 60
Query: 300 RG 301
Sbjct: 61 VA 62
>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional.
Length = 252
Score = 30.4 bits (69), Expect = 1.2
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
FD+ GK A+V G S +G A LL ++ A V IV SR + AD I++A G+
Sbjct: 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHV-IVSSR--KLDGCQAVADAIVAAGGK 58
>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 250
Score = 30.5 bits (69), Expect = 1.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP-----EEIT---RQADIIISAV 293
GK A+V G S +G AL L E +++ ++R++ EEI R+A + + V
Sbjct: 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANV 63
Query: 294 GQPNMVRG 301
G ++
Sbjct: 64 GDVEKIKE 71
>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional.
Length = 290
Score = 30.4 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQA 286
+KGK A++ G + +G A+L +E A ++IV+ T+Q
Sbjct: 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQR 90
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 30.0 bits (68), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 271
++G+ AVV G S+ +G+ LL A+V+I
Sbjct: 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAI 37
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 175
Score = 29.4 bits (67), Expect = 1.8
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 227 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------- 279
G G ++ GK +IG I G A L+ V I + R
Sbjct: 20 AGRWRPDALLGRELSGKTVGIIGLGRI-GRAVARRLKAFGMKV-IAYDRYPKAEAEALGA 77
Query: 280 -----EEITRQADIIISAVGQP------NMV---RGSWIKPGAVIIDVG 314
+E+ ++D++ + P +++ R + +KPGA++I+
Sbjct: 78 RYVSLDELLAESDVVSLHL--PLTPETRHLINAERLALMKPGAILINTA 124
>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase. This enzyme, together
with glutamate-1-semialdehyde-2,1-aminomutase
(TIGR00713), leads to the production of
delta-amino-levulinic acid from Glu-tRNA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 417
Score = 29.3 bits (66), Expect = 3.9
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------- 276
+EL R +KGK+A++IG + + A LL++ + I +RT
Sbjct: 168 VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIA-NRTYERAEDLAKELGG 226
Query: 277 -----KNPEEITRQADIIISAVGQPNMV 299
++ EE +ADI+IS+ G P+ +
Sbjct: 227 EAVKFEDLEEYLAEADIVISSTGAPHPI 254
>gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase.
N(5)-(carboxyethyl)ornithine synthase (ceo_syn)
catalyzes the NADP-dependent conversion of
N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine +
pyruvate. Ornithine plays a key role in the urea cycle,
which in mammals is used in arginine biosynthesis, and
is a precursor in polyamine synthesis. ceo_syn is
related to the NAD-dependent L-alanine dehydrogenases.
Like formate dehydrogenase and related enzymes, ceo_syn
is comprised of 2 domains connected by a long alpha
helical stretch, each resembling a Rossmann fold
NAD-binding domain. The NAD-binding domain is inserted
within the linear sequence of the more divergent
catalytic domain. These ceo_syn proteins have a
partially conserved NAD-binding motif and active site
residues that are characteristic of related enzymes such
as Saccharopine Dehydrogenase.
Length = 295
Score = 28.7 bits (65), Expect = 4.2
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--PEEITRQADIIISAVGQPNMV 299
+ V+G N A L+ A V++ RT+ EE++ + DII++ + Q
Sbjct: 154 QTKVAVLGFGN-TARGAIRALKLGGADVTVYTRRTEALFKEELS-EYDIIVNCILQDTDR 211
Query: 300 RGSWI--------KPGAVIIDV 313
I KPGA+IIDV
Sbjct: 212 PDHIIYEEDLKRLKPGALIIDV 233
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 28.9 bits (65), Expect = 4.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 335 YEEACEVASAITPVPGGVGPMTIAMLLSN 363
Y EAC P+ GP+ A L+ N
Sbjct: 169 YMEACNAFLKGVPIGDSAGPLVAARLIGN 197
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 28.8 bits (65), Expect = 4.3
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 230 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPE 280
+EL + ++KGK+ +VIG + G AA L + + +RT +
Sbjct: 166 VELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGG 224
Query: 281 EITR---------QADIIISAVGQPN 297
+AD++ISA G P+
Sbjct: 225 NAVPLDELLELLNEADVVISATGAPH 250
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 28.9 bits (65), Expect = 4.4
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 279 PEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGINP 317
E+ +Q DI+I+A+ +V +K GAVI+D+ +
Sbjct: 217 LEKELKQTDILINAILVDGPRAPILIMEELV--GPMKRGAVIVDLAADQ 263
>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional.
Length = 254
Score = 28.7 bits (65), Expect = 4.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVR 300
GK A++ G S+ +G AA L RE A V +V +R E+ + I + G+ +
Sbjct: 5 NGKVAIITGASSGIGRAAAKLFAREGAKV-VVGAR--RQAELDQLVAEIRAEGGEAVALA 61
Query: 301 G 301
G
Sbjct: 62 G 62
>gnl|CDD|236313 PRK08618, PRK08618, ornithine cyclodeaminase; Validated.
Length = 325
Score = 28.9 bits (65), Expect = 4.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 276 TKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVG 314
+ +E +ADII++ V +K G I VG
Sbjct: 183 VNSADEAIEEADIIVTVTNAKTPVFSEKLKKGVHINAVG 221
>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 150
Score = 27.9 bits (63), Expect = 5.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 268 TVSIVHSRTKNPEEITRQADIIISAVGQP----------NMVRGSWIKPGAVIIDVGI 315
+ + S + E +AD++I V P MV+ +KPG+VI+DV I
Sbjct: 67 VETDIFSNCEYLAEAIAEADLVIGTVLIPGARAPKLVTREMVKT--MKPGSVIVDVAI 122
>gnl|CDD|218150 pfam04559, Herpes_UL17, Herpesvirus UL17 protein. UL17 protein is
required for DNA cleavage and packaging in herpes
viruses. It has been shown to associate with immature
B-type capsids, and is required for the the localisation
of capsids and capsid proteins to the intranuclear sites
where viral DNA is cleaved and packaged. In the virion,
UL17 is a component of the tegument, which is a protein
layer surrounding the viral capsid.
Length = 496
Score = 28.9 bits (65), Expect = 5.5
Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 23/133 (17%)
Query: 163 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG--RLAMRGREPL 220
VF + + G+ LP+ C E D + P ++ RL++ E
Sbjct: 76 RSPVFRRERAPGGLFTSLPIFCE------------EGDPGRYDPFDVVALRLSIPDGEFR 123
Query: 221 FIPCTPKGCIELL---HRYGFDIKGKRAVVIGRSNIVGMPAALLLQR---EDATVSIVHS 274
I T ELL RY D + R + + AAL +
Sbjct: 124 DILFTYL---ELLPGGTRYNADGRRLRELCRQFLAYIRRGAALPPAAAPGAFDEPAPEAR 180
Query: 275 RTKNPEEITRQAD 287
EI
Sbjct: 181 LEDPFFEILSLIR 193
>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical
(c) SDR. CAD catalyzes the NADP-dependent reduction of
clavulanate-9-aldehyde to clavulanic acid, a
beta-lactamase inhibitor. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 243
Score = 28.3 bits (63), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQ 285
++GK A+V G S+ +G A L E A V+I R E + +
Sbjct: 1 LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADE 46
>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 28.3 bits (64), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV 272
F +KGK AV+ G ++G A L R A V+I+
Sbjct: 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAIL 40
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase.
Length = 410
Score = 28.6 bits (64), Expect = 6.7
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 209 IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA- 267
+GR A GR +F LL +G I G+ V+ G N VG AA L+ +
Sbjct: 179 LGREAATGRGVVF------ATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGK 231
Query: 268 --TVSIVHSRTKNPEEI 282
VS + KN +
Sbjct: 232 IVAVSDITGAVKNENGL 248
>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like,
classical (c) SDRs. Ga5DH catalyzes the NADP-dependent
conversion of carbon source D-gluconate and
5-keto-D-gluconate. This SDR subgroup has a classical
Gly-rich NAD(P)-binding motif and a conserved active
site tetrad pattern. However, it has been proposed that
Arg104 (Streptococcus suis Ga5DH numbering), as well as
an active site Ca2+, play a critical role in catalysis.
In addition to Ga5DHs this subgroup contains Erwinia
chrysanthemi KduD which is involved in pectin
degradation, and is a putative
2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107,15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 248
Score = 28.1 bits (63), Expect = 7.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
F +KGK A+V G S +G A L A + I SR + E +Q I G
Sbjct: 1 FSLKGKVALVTGASRGIGFGIASGLAEAGANIVIN-SRNEEKAEEAQQL---IEKEGV 54
>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional.
Length = 255
Score = 28.2 bits (63), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 271
FD+ G+RA+V G S +G A L + A V +
Sbjct: 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVIL 39
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 28.2 bits (64), Expect = 8.1
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 31/93 (33%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALL---LQREDATVSIVHSRTKN----------------- 278
D+ GK+ +VIG G L+ L + V +RT
Sbjct: 179 DLSGKKVLVIG----AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLD 234
Query: 279 --PEEITRQADIIISAVGQPNMVRGSWIKPGAV 309
PE + +ADI+IS+ G P+ + I G V
Sbjct: 235 ELPEAL-AEADIVISSTGAPHPI----IGKGMV 262
>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase
NodG; Reviewed.
Length = 245
Score = 28.0 bits (62), Expect = 8.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI 282
FD+ G++A+V G S +G A LL + A V + +R + E +
Sbjct: 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEAL 46
>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding. This domain is
found in fungi, plants, archaea and bacteria.
Length = 104
Score = 26.6 bits (60), Expect = 8.3
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV-------------HSRTKNPEEITR 284
D+KGKR +V+G V + L A V++V R P ++
Sbjct: 3 LDLKGKRVLVVGGGE-VALRKIRALLEAGAKVTVVSPEILEAEGLVRLIQREFEPGDLDG 61
Query: 285 QADIIISAVGQP 296
AD++I+A P
Sbjct: 62 -ADLVIAATDDP 72
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 27.5 bits (62), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVS 105
A + ID +AV K+I + I G VS
Sbjct: 32 AKSGRIDFEAVLKEICEIIDGPVS 55
>gnl|CDD|236016 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 28.1 bits (63), Expect = 9.1
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALL--LQREDATVSIVHSRTKNPEEITRQAD------- 287
+KGK V G S +G ALL L ++ A V + T N ++IT + +
Sbjct: 173 ALSLKGKTVAVTGASGTLGQ--ALLKELHQQGAKVVAL---TSNSDKITLEINGEDLPVK 227
Query: 288 IIISAVGQPNMVRGSWIKPGAVIIDVGIN 316
+ VGQ + K +II+ GIN
Sbjct: 228 TLHWQVGQEAALAELLEKVDILIINHGIN 256
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 28.2 bits (64), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 103 EVSRMKDAIGVVPGLAVILVGDRKDSA 129
EV +++A+G A ILV D ++ A
Sbjct: 359 EVEALREALGAGENDAFILVADEEEKA 385
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain. Malic
enzymes (malate oxidoreductases) catalyse the oxidative
decarboxylation of malate to form pyruvate.
Length = 231
Score = 27.4 bits (62), Expect = 9.8
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 16/86 (18%)
Query: 228 GCIELLHRYGFDIKGKRAVVIGRSNIV--GMPAAL------LLQREDATVSIVHSRTKNP 279
G +LL G +K K ++ ++ G L ++ + T
Sbjct: 39 GIAKLLVAAG--VKRKNIWLVDSKGLLTKGREDNLNPYKKPFARKTN------ERETGTL 90
Query: 280 EEITRQADIIISAVGQPNMVRGSWIK 305
EE + AD++I G +K
Sbjct: 91 EEAVKGADVLIGVSGPGGAFTEEMVK 116
>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD
binding domain.
Length = 162
Score = 27.0 bits (61), Expect = 9.8
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-------------RTKNPEEIT 283
+ GK VV G + VG A L+ A V + EE
Sbjct: 18 NVLLAGKNVVVAGYGD-VGKGVAARLRGLGARVIVTEIDPIRALEAAMDGFEVMKMEEAA 76
Query: 284 RQADIIISAVGQPNMVRGSWI---KPGAVI-----IDVGIN 316
++ADI ++A G +++ K GA++ DV I+
Sbjct: 77 KRADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEID 117
>gnl|CDD|197280 cd09183, PLDc_FAM83C_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83C. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83C (FAM83C). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83C shows high homology to other
FAM83 family members, indicating that FAM83C might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 274
Score = 27.9 bits (62), Expect = 9.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 65 PSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVV 114
P +P+ AT AS A++ + A I+D I +S K I +V
Sbjct: 103 PEIPL------ATKASPTEAQIFFQRDKANNIKDLIRSLISMAKTVIAIV 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,110,979
Number of extensions: 1873014
Number of successful extensions: 2100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 126
Length of query: 375
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 277
Effective length of database: 6,590,910
Effective search space: 1825682070
Effective search space used: 1825682070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)