RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017184
(375 letters)
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 532 bits (1373), Expect = 0.0
Identities = 145/294 (49%), Positives = 201/294 (68%), Gaps = 3/294 (1%)
Query: 82 ASAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQ 140
A A++++GK ++ QIR + +V+++K+ + G P LA++ VG+R DS Y+ K KA +
Sbjct: 2 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 61
Query: 141 SVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCH--IDEQSILNAVSME 198
+GI + + LP T+E EV+K+I+ N+D +VHG LVQLPL I+ + ++NA++ E
Sbjct: 62 EIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE 121
Query: 199 KDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPA 258
KDVDG +N GRLA FIPCTPKGC+EL+ G I G+ AVV+GRS IVG P
Sbjct: 122 KDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPM 181
Query: 259 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 318
LL +ATV+ HS+T + +E + DI++ A GQP MV+G WIKPGA++ID GIN V
Sbjct: 182 HDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV 241
Query: 319 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
D K P G ++VGDV Y+EA E AS ITPVPGGVGPMT+AML+ +T+ SAKR
Sbjct: 242 PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFL 295
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 530 bits (1368), Expect = 0.0
Identities = 156/294 (53%), Positives = 202/294 (68%), Gaps = 3/294 (1%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQS 141
SA++IDGKA+A IR E+ +V+ +++ G VPGLA I+VG R DS YV+ K KA
Sbjct: 5 SAQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAE 64
Query: 142 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 201
VG+ SF V LPED S++ + ++ N+DP+ HGI+VQLPLP H++E + + KD
Sbjct: 65 VGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124
Query: 202 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 261
D P+N+G L +GREP F PCT KG I LL R G ++ GKRAVV+GRSNIVG P A L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184
Query: 262 LQREDATVSIVHS--RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 319
L +E+ATV+IVHS T++ + R ADI+I+A+GQP V+G WIK GA ++DVG PV
Sbjct: 185 LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVP 244
Query: 320 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
D GYRLVGDVC+EEA A+ I+PVPGGVGPMTIAMLL NTL + K
Sbjct: 245 DPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALG 298
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 513 bits (1323), Expect = 0.0
Identities = 143/293 (48%), Positives = 184/293 (62%), Gaps = 8/293 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+AK+IDGK +A+Q+R E+ +V A PGLAV+LVG S YV +K+KAC+ V
Sbjct: 2 AAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEV 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G S LPE TSE E+L+ I N D ++ GILVQLPLP ID +L + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP N+GRL R P PCTP+G + LL RY D G AVVIG SNIVG P ++ L
Sbjct: 122 GFHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
T ++ H TKN AD++I AVG+P + G WIK GA++IDVGIN +E+ K
Sbjct: 180 LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGK 239
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 375
+VGDV +E+A + AS ITPVPGGVGPMT+A L+ NTL + H+ Q
Sbjct: 240 ------VVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQ 286
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 512 bits (1321), Expect = 0.0
Identities = 145/291 (49%), Positives = 189/291 (64%), Gaps = 8/291 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+A++IDGKA+A +R +I V+ + VPGLAVILVG S YV +K+K C+ V
Sbjct: 4 TAQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G S LP +TS+ ++L I NDDP++ GILVQLPLP H+D +L + +KDVD
Sbjct: 64 GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVD 123
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP NIGRLA R PL PCTPKG + LL G D+ G AVV+G SNIVG P AL L
Sbjct: 124 GFHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
TV++ H T++ + +AD+++ A G+P +V+G WIK GA++IDVGIN D +
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADGR 241
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
LVGDV YE A + AS ITPVPGGVGPMT A LL NTL +A+ +H+
Sbjct: 242 ------LVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD 286
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 508 bits (1311), Expect = 0.0
Identities = 130/290 (44%), Positives = 185/290 (63%), Gaps = 8/290 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+ +IDGK+++K +++ + +V K + P L I+VG+ S TYV +K+KAC V
Sbjct: 3 AMILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQV 62
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
GI+S + LPE T+E E+L+ I N+D SVH ILVQLPLP HI++ +++ ++ EKDVD
Sbjct: 63 GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVD 122
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP N+GRL +R + CTPKG + +L YG +G AVV+G SN+VG P + LL
Sbjct: 123 GFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLL 181
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
ATV+ H T + + T +ADI+I AVG+PN + +K GAV+IDVGIN V+
Sbjct: 182 LNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-- 239
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
++VGDV + + +AITPVPGGVGPMTI LL NT A+ ++
Sbjct: 240 -----KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 284
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 506 bits (1305), Expect = 0.0
Identities = 145/291 (49%), Positives = 194/291 (66%), Gaps = 8/291 (2%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+ ++DGKA++ +I++E+ + +K G+ LAVILVGD S TYV++K KAC+
Sbjct: 3 AMTLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEEC 61
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
GI S HL E+ ++ E+L I+ N D SVHGILVQLPLP HI + IL ++ KDVD
Sbjct: 62 GIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVD 121
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
GFHP+N+G L + G E F+PCTP G ++LL Y D++GK AV+IG SNIVG P A +L
Sbjct: 122 GFHPINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATML 180
Query: 263 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 322
ATVS+ H +TK+ TRQAD+II A G N++R +K G +++DVGIN +E K
Sbjct: 181 LNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESGK 240
Query: 323 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
+VGDV +EE + +S ITPVPGGVGPMTIAMLL NT+ SAK N
Sbjct: 241 ------IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN 285
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 479 bits (1235), Expect = e-172
Identities = 95/289 (32%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 85 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 144
K++ G+ +A++ + + G + + G+ P L +I +GD + ++ Y R K + + +GI
Sbjct: 2 KILRGEEIAEKKAENLHGII----ERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI 57
Query: 145 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 204
++ +D S +++LK I DP ++GI+++ PLP D I+ + KDVD
Sbjct: 58 AV-DLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDAL 116
Query: 205 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 264
P N G +A+ +P TP+ I+++ YG ++ RS +VG P +++L
Sbjct: 117 SPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLN 172
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 324
+ TVS+ HS+TK+ +TR + I++ AVG+P + + PG+V+IDVGIN V D
Sbjct: 173 RNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND---- 228
Query: 325 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 373
++VGD +E+ E AITPVPGGVGP+T +L N + +A+ N
Sbjct: 229 ---KVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQKN 274
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 477 bits (1231), Expect = e-171
Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 13/290 (4%)
Query: 83 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
A ++DGKA +I ++ V+ + A G PGL ILVGD S YVR K C V
Sbjct: 2 GAIMLDGKATRDEIFGDLKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKV 60
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
GI S LP D S + + I N +P G +VQLPLP H+DE + L V KD D
Sbjct: 61 GITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDAD 120
Query: 203 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 262
G HP N+GRL + P +PCTP+G + LL RY I G VVIGR VG P LLL
Sbjct: 121 GLHPTNLGRLVL--GTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLL 178
Query: 263 QR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 320
R E+ATV++ H+ T++ +TRQADI+++AVG +++ ++PGA +IDVG++ +D
Sbjct: 179 TRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD 238
Query: 321 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 370
LVGDV + + E+A ++P PGGVGP+T A LL+N + A+R
Sbjct: 239 -------GLVGDV-HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 410 bits (1057), Expect = e-144
Identities = 82/332 (24%), Positives = 122/332 (36%), Gaps = 64/332 (19%)
Query: 84 AKVIDGKAVAKQIRDEITGEVSRMKDAI-GVVPGLAVILVGDRKDSATYVRNKKKACQSV 142
+ I VA+ EI V K G P L L + + Y +K +S+
Sbjct: 5 GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 64
Query: 143 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 202
G L + + + I N D SV+GI+V P+ + +Q + V EKDV+
Sbjct: 65 GFRY---DLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVE 121
Query: 203 GFHPLNIGRL-------AMRGREPLFIPCTPKGCIELLHRY---------GFDIKGKRAV 246
G + + L R +PCTP +++L G + GK+ +
Sbjct: 122 GLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCI 181
Query: 247 VIGRSNIVGMPAALLLQREDATVSIVHSRTKN-------------------------PEE 281
VI RS IVG P A LL + ATV V ++
Sbjct: 182 VINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKK 241
Query: 282 ITRQADIIISAVGQPN-MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACE 340
+ +D++I+ V N +IK GAV I+ ++ E
Sbjct: 242 CSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFS---------------DDVKE 286
Query: 341 VASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 372
AS P+ G V TIAMLL N L + V
Sbjct: 287 KASLYVPMTGKV---TIAMLLRNMLRLVRNVE 315
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 68.8 bits (168), Expect = 3e-13
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 34/164 (20%)
Query: 225 TPKGCI-ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT 283
T +G I + F I G V+G + GM A A V + + I
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195
Query: 284 ----------------RQADIIISAVGQPNMVRG----SWIKPGAVIIDVGINPVEDAKS 323
R D+ I+ + P +V + + +ID+ P
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTI--PALVVTANVLAEMPSHTFVIDLASKP------ 247
Query: 324 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTS 367
E+ A + +PG V P T +L++ L
Sbjct: 248 ----GGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVK 287
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 53.6 bits (129), Expect = 3e-08
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 41/160 (25%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV----------------HS 274
+ + I G + V+G GM A A V +
Sbjct: 146 LAIQHTDYTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPF 204
Query: 275 RTKNPEEITRQADIIISAVGQPNMVRG----SWIKPGAVIIDVGINPVEDAKSPRGYRLV 330
T +E + DI I+ + P+M+ S + P +I+D+ P G
Sbjct: 205 HTDELKEHVKDIDICINTI--PSMILNQTVLSSMTPKTLILDLASRPG-------G---- 251
Query: 331 GDVCYEEACE----VASAITPVPGGVGPMTIAMLLSNTLT 366
+ E A +PG V P T +L+N L+
Sbjct: 252 ---TDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVLS 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 67/477 (14%), Positives = 121/477 (25%), Gaps = 190/477 (39%)
Query: 1 MGGS-RSMIFAD-CSSSTTARLVPF-------GRSR----LLCGGGALCAR------RRL 41
+ GS ++ + D C S + F +L L + R
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 42 HVGVGPSLP-----ASLRTTLTVHSSPSPSLPVM-NVSCSATMASEASAKVIDG------ 89
L A LR L + L V+ NV +AK +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQ---------NAKAWNAFNLSCK 267
Query: 90 -------KAVAKQIRDEITGEVS-----------------------RMKD----AIGVVP 115
K V + T +S R +D + P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 116 GLAVILVG----DRKDSATYVR----NKKKACQSVGINSFEVHLPEDTSEQEVLKHISVF 167
+ ++ D + + +K +N E P + +++ +SVF
Sbjct: 328 -RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEY--RKMFDRLSVF 381
Query: 168 NDD---P--------------------------------------SVHGILVQLPLPCHI 186
P S+ I L L +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKL 439
Query: 187 DE-----QSILNAVSMEKDVD-----------------GFHPLNIGRLAMRGREPLFIPC 224
+ +SI++ ++ K D G H NI R LF
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE---HPERMTLF--- 493
Query: 225 TPKGCIELLHRYGFDIKGK-RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT 283
+ + F ++ K R N G L Q + I N +
Sbjct: 494 -RM----VFLDFRF-LEQKIRHDSTAW-NASGSILNTLQQLKFYKPYI----CDNDPKYE 542
Query: 284 RQADIIISAVGQ--PNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEA 338
R + I+ + + N++ ++ + + ++A +EEA
Sbjct: 543 RLVNAILDFLPKIEENLICS----KYTDLLRIALMAEDEA------------IFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 5e-05
Identities = 64/360 (17%), Positives = 108/360 (30%), Gaps = 127/360 (35%)
Query: 60 HSSPSPSLPVMN---VSCS----ATMAS-EASAKVIDGKAVAKQIRDEITGEVSRMKDAI 111
+ S +P + +SC +A +AK++ G ++R + G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPG-ELRSYLKGATGHSQ--- 275
Query: 112 GVVPGLAVILVGDRKDSATYVRNKKKA----------CQ-SVGINSFEVHLPEDTSE--- 157
G+V +A+ + + + +KA C + S + ED+ E
Sbjct: 276 GLVTAVAIAETDSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 158 --------------QEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNA----VSMEK 199
++V +++ N LP + E S++N V
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNS---------HLPAGKQV-EISLVNGAKNLV---- 378
Query: 200 DVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIG-RSNIVGMP- 257
V G P ++ L + R+ P G + R F +R + R V P
Sbjct: 379 -VSG-PPQSLYGLNLTLRK----AKAPSGLDQ--SRIPFS---ERKLKFSNRFLPVASPF 427
Query: 258 -AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGIN 316
+ LL A+ I KN DI I
Sbjct: 428 HSHLL---VPASDLINKDLVKNNVSF-NAKDIQI-------------------------- 457
Query: 317 PV---EDAKSPRGY------RLVGDVCYE----EACEVASAITPV----PG---GVGPMT 356
PV D R R+V + E A T + PG G+G +T
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THILDFGPGGASGLGVLT 516
Score = 44.3 bits (104), Expect = 7e-05
Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 71/177 (40%)
Query: 4 SRSMIFADCSSSTTARLVPFGRSRLL----------CGGGALCARRRLHVGVGPSLPASL 53
+ M +V F R + + A + P
Sbjct: 1774 ADVMSIES-----LVEVV-FYRGMTMQVAVPRDELGRSNYGMIA-------INPG----- 1815
Query: 54 RTTLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGV 113
+A+ + EA V++ V K+ TG + + +
Sbjct: 1816 -------------------RVAASFSQEALQYVVE--RVGKR-----TGWL------VEI 1843
Query: 114 V----PGLAVILVGDRK--DSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHI 164
V + GD + D+ T V N K Q + I + L + S +EV H+
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKL-QKIDI----IELQKSLSLEEVEGHL 1895
Score = 39.6 bits (92), Expect = 0.002
Identities = 49/356 (13%), Positives = 90/356 (25%), Gaps = 117/356 (32%)
Query: 51 ASLRT-TLTVHSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDE---ITGEVSR 106
S R TL+ H S L V AS Q++++ I E +
Sbjct: 4 YSTRPLTLS-HGSLEHVLLV-----PTASFFIAS-----------QLQEQFNKILPEPTE 46
Query: 107 ---MKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKH 163
D L +G YV S V + +VL
Sbjct: 47 GFAADDEPTTPAELVGKFLG-------YV-------------SSLVEPSKVGQFDQVLNL 86
Query: 164 I-----SVF---NDDPSVHGILVQLPLPCHIDE---QSILNA-----VSMEKDVDGFHPL 207
+ + ND +H + +L + ++ + ++ D
Sbjct: 87 CLTEFENCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 208 NIGRLAMRGREPLFIPC----TPKGCI-ELLHRYGFDI-KGKRAVVIGRSNIVGMPAALL 261
+ R G L EL Y +I +A
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY--QTYHVLVGDLIKF-------SAET 194
Query: 262 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIK-PGAVIIDVGINPVED 320
L ++ + + T+ +I+ W++ P P +D
Sbjct: 195 LS------ELIRTTLDAEKVFTQGLNIL------------EWLENPSNT-------PDKD 229
Query: 321 --AKSPRGYRLVGDV---CYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 371
P L+G + Y ++ G P + L ++ +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLL--------GFTPGELRSYLKGATGHSQGL 277
Score = 35.8 bits (82), Expect = 0.024
Identities = 45/247 (18%), Positives = 70/247 (28%), Gaps = 73/247 (29%)
Query: 140 QSVGI-----NSFEV----------HLPEDT--SEQEVLKHISVFNDDPSVHGILVQLPL 182
Q G+ + + H + S +++ ++P I
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI------NNPVNLTIHFGGEK 1680
Query: 183 PCHIDEQSILNAVSMEKDVDG-------FHPLN--IGRLAMRG-REPLFI-----PC--- 224
I E +A+ E VDG F +N R + L P
Sbjct: 1681 GKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 225 TPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAAL-----LLQREDATVSIVHSRTKNP 279
K E L G A G S +G AAL ++ E V +V R
Sbjct: 1739 MEKAAFEDLKSKGLIPAD--ATFAGHS--LGEYAALASLADVMSIESL-VEVVFYRGM-- 1791
Query: 280 EEITRQADIIISAVGQPN--MVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYE- 336
T Q + +G+ N M+ I PG V ++ +V V
Sbjct: 1792 ---TMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQY--------VVERVGKRT 1837
Query: 337 -EACEVA 342
E+
Sbjct: 1838 GWLVEIV 1844
Score = 28.5 bits (63), Expect = 5.4
Identities = 52/329 (15%), Positives = 86/329 (26%), Gaps = 142/329 (43%)
Query: 1 MGGSRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLR---TTL 57
MG M +S A+ V + R A G S+ + L
Sbjct: 1631 MG----MDLYK--TSKAAQDV-WNR-----------ADNHFKDTYGFSILDIVINNPVNL 1672
Query: 58 TVHSSPSPSLPV-MNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPG 116
T+H + N S M E DGK ++I EI +
Sbjct: 1673 TIHFGGEKGKRIRENYS---AMIFETIV---DGKLKTEKIFKEINEHSTS---------- 1716
Query: 117 LAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQ-----------EVLKHIS 165
++ + + T Q E LK
Sbjct: 1717 --YTFRSEKG---------------------LLSATQFT--QPALTLMEKAAFEDLKSKG 1751
Query: 166 VFNDDPSV--H--GILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG---RL-AMRGR 217
+ D + H G E + L +++ DV ++I + RG
Sbjct: 1752 LIPADATFAGHSLG------------EYAALASLA---DV-----MSIESLVEVVFYRGM 1791
Query: 218 EPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR------EDATVSI 271
P+ +GRSN GM A+ R ++A +
Sbjct: 1792 --TMQVAVPRD------------------ELGRSN-YGM-IAINPGRVAASFSQEALQYV 1829
Query: 272 VHSRTKNPEEITRQADIIISAV-----GQ 295
V E + ++ ++ V Q
Sbjct: 1830 V-------ERVGKRTGWLVEIVNYNVENQ 1851
Score = 28.1 bits (62), Expect = 7.3
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 15/48 (31%)
Query: 251 SNIVGM--------PAA-LLLQREDATV------SIVHSRTKNPEEIT 283
S GM AA + R D SI+ NP +T
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 39.8 bits (94), Expect = 8e-04
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G ++ L ++K K +V+G R+ I L +E A V + +RTK
Sbjct: 115 GFLKSLKSLIPEVKEKSILVLGAGGASRAVIYA------LVKEGAKVFLW-NRTKEKAIK 167
Query: 278 -----------NPEEITRQADIIISA--VG----QPNMVRGSWIKPGAVIIDV 313
+PEE+ + +I++ VG P + IK V++D+
Sbjct: 168 LAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDI 220
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 39.6 bits (93), Expect = 9e-04
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 242 GKRAVVIGRSNIVGMPAALLLQREDATVSIV-HSRTKNPEEITRQADIIISAV---GQPN 297
K +V G + G+ A L+ +SI+ E I AD++I +V
Sbjct: 22 HKIVIVGGYGKLGGL-FARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLE 80
Query: 298 MVR--GSWIKPGAVIIDVG---INPVEDAKSPRGYRLVG 331
+ ++ ++ D+ P+ ++G
Sbjct: 81 TIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLG 119
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 38.9 bits (90), Expect = 0.002
Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITRQ 285
D+ K ++G +G + ++ + + + +
Sbjct: 8 DVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDE 67
Query: 286 ADIIISAVGQPNMVRG-------SWIKPGAVIIDV-GINPVEDAKSPR 325
AD+++ A+ P+ + ++PG +++ + P R
Sbjct: 68 ADVVVLAL--PDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPER 113
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 33/119 (27%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + L + I+ +++G + L + T+++ +RT
Sbjct: 103 GYVNGLKQIYEGIEDAYILILGAGGASKGIANE-----LYKIVRPTLTVA-NRTMSRFNN 156
Query: 278 -----------NPEEITRQADIIISA--VG----QPNMVRGSWIKPGAVIIDVGINPVE 319
+ E + DIII+ G +++ + + ++ D+ NP +
Sbjct: 157 WSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYK 215
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 37.7 bits (88), Expect = 0.005
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISA----VGQPNMVRGSWIKPGAVIIDV 313
A L + T+ S E + DII + ++ ++PG + V
Sbjct: 171 IANLKEYSGLTIRRASS----VAEAVKGVDIITTVTADKAYAT-IITPDMLEPGMHLNAV 225
Query: 314 G 314
G
Sbjct: 226 G 226
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 37.1 bits (87), Expect = 0.006
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 34/119 (28%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G ++L ++ +IK VV+G R+ + L + +V +R
Sbjct: 108 GFGKMLSKFRVEIKNNICVVLGSGGAARAVLQY-----LKDNFAKDIYVV-TRNPEKTSE 161
Query: 278 --------NPEEITR-QADIIISA--VG-QPNM----VRGSWIKPGAVIIDVGI-NPVE 319
+ +E++ + D+II+ G P V + + +D+ I NPVE
Sbjct: 162 IYGEFKVISYDELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDL-IYNPVE 219
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 36.4 bits (84), Expect = 0.009
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
G +KGK+AVV+ + VGM +A LL E A V + R ++ AD +
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLC-GR--KLDKAQAAADSVNKRFK 168
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 36.5 bits (85), Expect = 0.010
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 276 TKNPEEITRQADIIISA--VGQPNMVRGSWIKPGAVIIDVG 314
+ +E AD+II+ +P ++ G W+KPGA I VG
Sbjct: 187 CSSVQEAVAGADVIITVTLATEP-ILFGEWVKPGAHINAVG 226
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 36.1 bits (84), Expect = 0.015
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 276 TKNPEEITRQADIIISAVG--QPNMVRGSWIKPGAVIIDVG 314
+ P E + D++++ +P +V+ W++ G I +G
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKP-VVKAEWVEEGTHINAIG 217
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 35.6 bits (83), Expect = 0.016
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 35/121 (28%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G ++ L +KG ++IG R + LL ++ A++++ +RT
Sbjct: 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKP-----LLDQQPASITVT-NRTFAKAEQ 165
Query: 278 --------------NPEEITRQADIIISA-----VGQPNMVRGSWIKPGAVIIDVGINPV 318
E++ + D+II++ G+ + +V D+
Sbjct: 166 LAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKG 225
Query: 319 E 319
Sbjct: 226 Y 226
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 35.9 bits (84), Expect = 0.019
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 269 VSIVHSRTKNPEEITRQADIIISAVGQP----------NMVRGSWIKPGAVIIDVGI 315
V + + N ++ + AD++I AV P +M+ S +K GAVI+DV +
Sbjct: 213 VITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDML--SLMKEGAVIVDVAV 267
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30
TAPE measure, P31 penton protein, P16 membrane protein;
4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Length = 117
Score = 34.0 bits (77), Expect = 0.019
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 50 PASLRTTLTV--HSSPSPSLPVMNVSCSATMASEASAKVIDGKAVAKQIRDEITGEVS 105
P + TL V ++SPSP+LP N SC A SA + G +A ++ D IT +++
Sbjct: 46 PQAGSVTLPVAGYTSPSPTLPNRNRSCGCNPA--VSAAMAQGADLASKLTDSITSQLN 101
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 35.5 bits (83), Expect = 0.021
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 269 VSIVHSRTKNPEEITRQADIIISAVGQP----------NMVRGSWIKPGAVIIDVGI 315
V +++S + E +AD++I AV P ++V ++ G+VI+DV +
Sbjct: 214 VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLV--EQMRTGSVIVDVAV 268
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 35.5 bits (83), Expect = 0.022
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 269 VSIVHSRTKNPEEITRQADIIISAVGQP----------NMVRGSWIKPGAVIIDVGI 315
+ +S E ++AD++I AV P ++V + +KPGAV++D+ I
Sbjct: 215 IHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLV--AHMKPGAVLVDIAI 269
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 35.6 bits (83), Expect = 0.026
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 24/143 (16%)
Query: 239 DIKGKRAVVIG--RSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQP 296
D +GK V+IG + G+ T ++ +R P +
Sbjct: 2 DYQGKNVVIIGLGLT---GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLN 58
Query: 297 NMVRGSWIKPGAVIIDVGINP--------VEDAKSPRGYRLVGDVCYEEACEVASA-ITP 347
+ W+ +I+ +P + A G +VGD+ E C A A I
Sbjct: 59 D----EWLMAADLIV---ASPGIALAHPSLSAAAD-AGIEIVGDI--ELFCREAQAPIVA 108
Query: 348 VPGGVGPMTIAMLLSNTLTSAKR 370
+ G G T+ L+ +A
Sbjct: 109 ITGSNGKSTVTTLVGEMAKAAGV 131
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 35.2 bits (82), Expect = 0.034
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
E R+G ++ + V G N VG ++R+ V
Sbjct: 201 ESAKRFGIKMEDAKIAVQGFGN-VGTFTVKNIERQGGKV 238
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 34.8 bits (81), Expect = 0.035
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
E + + G ++ R ++ G N G A + A V
Sbjct: 210 EAVKKKGIKLQNARIIIQGFGN-AGSFLAKFMHDAGAKV 247
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 34.9 bits (81), Expect = 0.037
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 239 DIKGKRAVVIG--RSNIVGMPAALLLQREDATVSIVHSRT-KNPEEITRQADIIISAVGQ 295
+ K+ +V+G RS G AA LL + A V++ + + I V
Sbjct: 6 TFENKKVLVLGLARS---GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
Query: 296 PNMVRGSWIKPGAVIIDVGINP----VEDAKSPRGYRLVGDVCYEEACEVASA-ITPVPG 350
+ + +I + GI V+ A + ++ +V E A V+ + + + G
Sbjct: 63 SHPLELLDEDFCYMIKNPGIPYNNPMVKKALE-KQIPVLTEV--ELAYLVSESQLIGITG 119
Query: 351 GVGPMTIAMLLSNTLTSAKR 370
G T +++ L + +
Sbjct: 120 SNGKTTTTTMIAEVLNAGGQ 139
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 34.6 bits (80), Expect = 0.039
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 258 AALLLQREDATVSIVHSRTKNPEEITRQADIIISA--VGQPNMVRGSWIKPGAVIIDVG 314
+ +R + P +I QADI+++A P + G ++ GA + +G
Sbjct: 161 LERIGRRCGVPARMA-----APADIAAQADIVVTATRSTTP-LFAGQALRAGAFVGAIG 213
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 34.8 bits (81), Expect = 0.044
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
+ G ++G R + G N VG AA A V
Sbjct: 224 AAAEKIGLQVEGARVAIQGFGN-VGNAAARAFHDHGARV 261
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 34.4 bits (80), Expect = 0.050
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
E+ + I+GK + G N VG A L++ A V
Sbjct: 199 EMAKKLWGGIEGKTVAIQGMGN-VGRWTAYWLEKMGAKV 236
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 34.4 bits (80), Expect = 0.053
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
L R G D++G R VV G VG AL +R V
Sbjct: 207 ALAKRRGLDLRGARVVVQGLGQ-VGAAVALHAERLGMRV 244
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 33.7 bits (78), Expect = 0.071
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 39/121 (32%)
Query: 232 LLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK--------- 277
L + GKR +VIG R LL + + +RT
Sbjct: 131 LEEEMNITLDGKRILVIGAGGGARGIYFS-----LLSTAAERIDMA-NRTVEKAERLVRE 184
Query: 278 ------------NPEEITRQADIIISA--VG-QPNM----VRGSWIKPGAVIIDVGINPV 318
E + DIII+ VG P + + ++PG ++ D+ NP+
Sbjct: 185 GDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPL 244
Query: 319 E 319
E
Sbjct: 245 E 245
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 33.7 bits (78), Expect = 0.085
Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 49/135 (36%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + L G DI GK+ + G + + +SI +R
Sbjct: 140 GYMRALKEAGHDIIGKKMTICGAGGAATAICIQ-----AALDGVKEISIF-NRKDDFYAN 193
Query: 278 -------------------------NPEEITRQADIIISA--------VGQPNMVRGSWI 304
+ ++ I +A G+ + +
Sbjct: 194 AEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253
Query: 305 KPGAVIIDVGINPVE 319
+P ++ DV P +
Sbjct: 254 RPELIVSDVVYKPTK 268
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 33.3 bits (77), Expect = 0.11
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 32/123 (26%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMP------------------AALLLQR 264
G L +K K V+ G R+ + A + ++
Sbjct: 114 GARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEK 173
Query: 265 EDATVSIVHSRTKNPEEITRQADIIISA--VG-QPN-----MVRGSWIKPGAVIIDVGIN 316
+ + ++ DIII+A +G PN +V+ ++ V++D+ N
Sbjct: 174 LNKKFGEEVKFSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYN 232
Query: 317 PVE 319
P+E
Sbjct: 233 PLE 235
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 33.3 bits (77), Expect = 0.12
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 24/83 (28%)
Query: 253 IVGMPAALLLQREDATVSIVHSRTK--------------NPEEITRQADIIISAVGQPNM 298
I+G P A+ L R + V + ++T ADII V
Sbjct: 13 IMGSPMAINLARAGHQLH-VTTIGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQ 71
Query: 299 VRG---------SWIKPGAVIID 312
V G I+D
Sbjct: 72 VEDVLFGEHGCAKTSLQGKTIVD 94
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 33.0 bits (76), Expect = 0.13
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 9/43 (20%)
Query: 279 PEEITRQADIIISAVGQPNMVRG---------SWIKPGAVIID 312
P E+ DI + V P + I+PG +D
Sbjct: 80 PAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD 122
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M
2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M
2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Length = 136
Score = 31.9 bits (72), Expect = 0.15
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS 270
R +GR +G +G G+ + + ++R+
Sbjct: 10 RKMHKGR----NRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWI 65
Query: 271 IVHS---RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGY 327
V T+ P + G + I+PG V+ ++ P E A+
Sbjct: 66 RVFPDKPITEKPLAVRMGKG-----KGNVEY-WVALIQPGKVLYEMDGVPEELAR----- 114
Query: 328 RLVGDVCYEEACEVASAITPVP 349
EA ++A+A P+
Sbjct: 115 ---------EAFKLAAAKLPIK 127
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 32.1 bits (74), Expect = 0.19
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISA 292
I+ K +V+ S +G A +L +E A V + +R N E + R +
Sbjct: 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEV-TICAR--NEELLKRSGHRYVVC 66
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 32.6 bits (75), Expect = 0.20
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 253 IVGMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQPN 297
I+G ++ L + V+ V +RT +P E+ ++ I+ + P
Sbjct: 31 IMGKAMSMNLLKNGFKVT-VWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPC 89
Query: 298 MVRG---------SWIKPGAVIID 312
I G ID
Sbjct: 90 AALSVVFDKGGVLEQICEGKGYID 113
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 32.2 bits (74), Expect = 0.21
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 253 IVGMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQPN 297
+G+P A L + V +RT R ADI++S +
Sbjct: 41 SMGLPMARRLCEAGYALQ-VWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGA 99
Query: 298 MVRG--------SWIKPGAVIID 312
+V+ + +KPG++ +D
Sbjct: 100 VVQDVLFAQGVAAAMKPGSLFLD 122
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.2 bits (74), Expect = 0.23
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 271 IVHSRTKNPEEITRQADIIISA--VGQ-PNMVR---GSWIKPGAVIIDVG------INPV 318
IV T + + AD+II A + + + ++ +K +I D G +
Sbjct: 52 IVDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAA 111
Query: 319 EDAKSPRGYRLVG 331
E + + VG
Sbjct: 112 EYYLKDKPVQFVG 124
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 32.1 bits (74), Expect = 0.24
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 279 PEEITRQADIIISAVGQPNMVRGSW---------IKPGAVIID 312
P E+ DI I+ + P R I G ID
Sbjct: 51 PAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYID 93
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 32.1 bits (74), Expect = 0.25
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 278 NPEEITRQADIIISAVGQPNMVRGSW---------IKPGAVIID 312
+ I Q D+II+ + V+ KPG V+ID
Sbjct: 54 TAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID 97
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 32.1 bits (74), Expect = 0.27
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 9/43 (20%)
Query: 279 PEEITRQADIIISAVGQPNMVRG---------SWIKPGAVIID 312
P E+ + + + P I G +D
Sbjct: 51 PCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD 93
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 31.8 bits (73), Expect = 0.29
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 37/129 (28%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMP-----------------------AA 259
G I + GFD++GK V++G + A
Sbjct: 134 GHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK 193
Query: 260 LLLQREDATVSIVH-SRTKNPEEITRQADIIISA--------VGQPNMVRGSWIKPGAVI 310
+ + D V++ + E ADI+ + + + S ++P ++
Sbjct: 194 RVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLV 253
Query: 311 IDVGINPVE 319
+ NP
Sbjct: 254 TECVYNPHM 262
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 32.1 bits (74), Expect = 0.30
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRED-ATV 269
+ G D K V G N VG AALL+ +E + V
Sbjct: 198 LAMDVLGIDPKKATVAVQGFGN-VGQFAALLISQELGSKV 236
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 31.4 bits (72), Expect = 0.39
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
I GK AV+ G S+ +G+ A +E A + ++ +R + + A + G
Sbjct: 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHI-VLVAR--QVDRLHEAARSLKEKFG 56
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 31.0 bits (71), Expect = 0.49
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 279 PEEITRQADIIISAVGQPNMVRG------SWIKPGAVIIDVGINPVEDAKSPRGYRLVGD 332
P E +A +I + + V +++ G +D E + R + +
Sbjct: 49 PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEAS------RRLAE 102
Query: 333 VCYEEACEVASAITPVPGGVG 353
E+ A PV GG
Sbjct: 103 RLREKGVTYLDA--PVSGGTS 121
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 31.0 bits (71), Expect = 0.53
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
+ GKRA++ G + +G A A + ++ R + E+ + G
Sbjct: 16 LRLDGKRALITGATKGIGADIARAFAAAGARL-VLSGR--DVSELDAARRALGEQFG 69
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 31.2 bits (71), Expect = 0.58
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
K VV G N VG+ + L R A
Sbjct: 239 TPGFGDKTFVVQGFGN-VGLHSMRYLHRFGAKC 270
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 31.1 bits (71), Expect = 0.60
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 230 IELLHRYGFDIKGKRAVVIG---RSNIVGM---PA---ALLLQREDATVSIV-------- 272
+ L R G + G + ++G + P+ L + A+V +
Sbjct: 341 VAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYP 400
Query: 273 -HSRTKNPEEITRQADIIISAVG-------QPNMVRGSWIKPGAVIIDV 313
+ N EE+ R AD I+ G + + + K VIID
Sbjct: 401 GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDG 449
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 31.0 bits (71), Expect = 0.61
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 42/128 (32%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + + K V +G + L+ + +
Sbjct: 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYA-----LVTHGVQKLQVA-DLDTSRAQA 166
Query: 278 --------------------NPEEITRQADIIISA-----VGQPNM-VRGSWIKPGAVII 311
E++ AD +++A P S + +
Sbjct: 167 LADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVG 226
Query: 312 DVGINPVE 319
DV P+E
Sbjct: 227 DVVYMPIE 234
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.6 bits (70), Expect = 0.67
Identities = 6/49 (12%), Positives = 20/49 (40%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQ 285
G+++K + ++I + + L+ + I + + + I +
Sbjct: 141 GWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDE 189
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 30.6 bits (70), Expect = 0.78
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
+KGK A+V G + +G A L E A V +++ R E + I +
Sbjct: 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANV-LINGR--REENVNETIKEIRAQYPD 60
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 30.7 bits (70), Expect = 0.80
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 234 HRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP-------------E 280
+ G++ ++ G I G A V I + T +P
Sbjct: 129 PMTTSTLTGQQLLIYGTGQI-GQSLAAKASALGMHV-IGVNTTGHPADHFHETVAFTATA 186
Query: 281 EITRQADIIISAVGQP------NMV---RGSWIKPGAVIIDVG 314
+ A+ I++A+ P ++ K ++I++G
Sbjct: 187 DALATANFIVNAL--PLTPTTHHLFSTELFQQTKQQPMLINIG 227
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 30.6 bits (70), Expect = 0.87
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 285 QADIIISAVGQPNM-----VRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
D+++ +G P G ++KPG +I V +P+E A++P G +V D+
Sbjct: 266 GHDVVL-VIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADI 318
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 30.2 bits (69), Expect = 0.90
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 37/122 (30%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + L R F G R ++IG R ++ L D V+I +RT
Sbjct: 105 GLLSDLERLSFIRPGLRILLIGAGGASRGVLLP------LLSLDCAVTIT-NRTVSRAEE 157
Query: 278 ---------------NPEEITRQADIIISA-----VGQPNMVRGSWIKPGAVIIDVGINP 317
E + D+II+A G + S I PG D+
Sbjct: 158 LAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQK 217
Query: 318 VE 319
+
Sbjct: 218 GK 219
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 30.6 bits (70), Expect = 0.92
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
++ + GK + G N V AA L A
Sbjct: 219 AVMKHENDTLVGKTVALAGFGN-VAWGAAKKLAELGAKA 256
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 30.2 bits (69), Expect = 0.92
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 35/120 (29%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTKN---- 278
++L+ +Y + K + +V G ++ + + I +R
Sbjct: 106 AIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAA-----FKNSGFEKLKIY-ARNVKTGQY 158
Query: 279 ----------PEEITRQADIIISA--VG-------QPNMVRGSWIKPGAVIIDVGINPVE 319
+QADI+++ +G ++I +V DV PVE
Sbjct: 159 LAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 30.2 bits (69), Expect = 0.96
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 37/116 (31%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 277
G + L R + + +++G + L L + + + +RT
Sbjct: 105 GLVTDLQRLNWLRPNQHVLILGAGGATKG------VLLPLLQAQQNIVLA-NRTFSKTKE 157
Query: 278 ---------------NPEEITRQADIIISA-----VGQPNMVRGSWIKPGAVIIDV 313
+ D++I+A G V +K G+ D+
Sbjct: 158 LAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDM 213
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.2 bits (69), Expect = 1.0
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 271 IVHSRTKNPEEI-TRQADIIISA--VGQ-PNMVR--GSWIKPGAVIIDVG---INPVEDA 321
I+ T + ++ D ++ + V + + + A + D G V D
Sbjct: 47 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDL 106
Query: 322 KSPRGYRLVG 331
++ G R VG
Sbjct: 107 ENILGKRFVG 116
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 30.5 bits (69), Expect = 1.0
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH-------------SRTKNPEEITRQA 286
I GK+ ++ G + VG A ++ + A VS+ EE A
Sbjct: 272 IGGKKVLICGYGD-VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDA 330
Query: 287 DIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI+++A G +++ +K A++ ++G
Sbjct: 331 DIVVTATGNKDIIMLEHIKAMKDHAILGNIG 361
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 29.9 bits (68), Expect = 1.0
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT 283
D+ K + + +G+ + L + + ++ R +NP +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA 46
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 135
Score = 29.2 bits (65), Expect = 1.1
Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 26/142 (18%)
Query: 211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS 270
R RGR + +G RY + + +R
Sbjct: 10 RKQHRGR---MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWV 66
Query: 271 IV---HSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGY 327
+ T P E + G P + +KPG ++ ++ A+
Sbjct: 67 RIFPDKPVTVRPAETRMGSG-----KGSPEY-WVAVVKPGRILYEISGVAENIAR----- 115
Query: 328 RLVGDVCYEEACEVASAITPVP 349
A +A++ P+
Sbjct: 116 ---------RAVAIAASKMPIR 128
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.4 bits (67), Expect = 1.1
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 29/100 (29%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALL---LQREDATVSIVHSRTKN----------------- 278
G + +++G GM A+ + V++ R +
Sbjct: 18 KNGGNKILLVG----NGMLASEIAPYFSYPQYKVTVA-GRNIDHVRAFAEKYEYEYVLIN 72
Query: 279 --PEEITRQADIIISAVGQPNMV-RGSWIKPGAVIIDVGI 315
I + D+II+A + + PG + ID+G
Sbjct: 73 DIDSLI-KNNDVIITATSSKTPIVEERSLMPGKLFIDLGN 111
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 30.3 bits (69), Expect = 1.1
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 277 KNPEEITRQADIIISAVGQPNMVRGSW---------IKPGAVIID 312
++ + + AD++IS + V G + I PG ++++
Sbjct: 51 RSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE 95
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 271 IVHSRTKNPEEITRQADIIISA--VGQ-PNMVR--GSWIKPGAVIIDVG 314
+V ++ + + A II + + + P A++ DV
Sbjct: 44 LVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA 91
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 29.9 bits (68), Expect = 1.1
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQ 285
F +KGK A+V G S +G A + AT+ + +
Sbjct: 30 FSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAA 77
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 271 IVHSRTKNPEEI-TRQADIIISA--VGQ-PNMVR--GSWIKPGAVIIDVG---INPVEDA 321
I+ T + ++ D ++ + V + + + A + D G V D
Sbjct: 79 IIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDL 138
Query: 322 KSPRGYRLVG 331
++ G R VG
Sbjct: 139 ENILGKRFVG 148
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 30.0 bits (68), Expect = 1.4
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-------------RTKNPEEITRQA 286
+ GK AVV G + VG +A L A V + ++ A
Sbjct: 245 MAGKVAVVCGYGD-VGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTA 303
Query: 287 DIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI+++ G +++ +K ++ ++G
Sbjct: 304 DIVVTTTGNKDVITIDHMRKMKDMCIVGNIG 334
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 29.4 bits (67), Expect = 1.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
FD++G+ A+V G S +G A L +V +V SR N EE + A + G
Sbjct: 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSV-VVASR--NLEEASEAAQKLTEKYG 70
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 29.4 bits (66), Expect = 1.8
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 279 PEEITRQADIIISAVGQPNMVR-----GSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDV 333
E+ + D+I S V + G + GA+ D SP R +GDV
Sbjct: 77 VAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADF--TSC----SPAVKRAIGDV 130
Query: 334 CYEEACEVASAITPVPGGVGP 354
A V V P
Sbjct: 131 ISRHRPSAQYAAVAVMSAVKP 151
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 29.5 bits (67), Expect = 1.8
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 26/83 (31%)
Query: 255 GMPAALLLQREDATVSIVHSRTK----------------NPEEITRQADIIISAVGQPNM 298
GM AA R + + E D ++ V
Sbjct: 19 GMGAARSCLRAGLSTW-GADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ 77
Query: 299 VRG---------SWIKPGAVIID 312
VR +KPG+ ++
Sbjct: 78 VRQVLFGEDGVAHLMKPGSAVMV 100
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEE 281
F + G+ AVV G + +G A R A V + RT +E
Sbjct: 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHV-LAWGRTDGVKE 69
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 29.5 bits (67), Expect = 1.9
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 278 NPEEITRQADIIISAVGQPNMVRGSW---------IKPGAVIID 312
N +++ +DII +++ +V K G VI+D
Sbjct: 53 NNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVD 96
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 29.4 bits (67), Expect = 1.9
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 231 ELLHRYGFD-IKGKRAVVIGRSNIVGMPAALLLQREDATV---SIVHSRTKNPEEI 282
+ G + G +V G VG A L A + R + +
Sbjct: 163 ATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHAVAL 217
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 29.7 bits (67), Expect = 2.0
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 28/120 (23%)
Query: 226 PKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN------- 278
G + + K VVIG + G A + + A V I +RT
Sbjct: 348 SSGDPSSVPSSSSPLASKTVVVIG-AGGAGKALAYGAKEKGAKVVIA-NRTYERALELAE 405
Query: 279 ------------PEEITRQADIIISA--VG-QPNM----VRGSWIKPGAVIIDVGINPVE 319
++ + +G QPN+ + +K A++ D P
Sbjct: 406 AIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 465
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 29.0 bits (66), Expect = 2.0
Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 35/117 (29%)
Query: 232 LLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK--------- 277
+ G ++ +R +++G R ++ LQ + + I +R
Sbjct: 110 IEENLGEPLRNRRVLLLGAGGAVRGALLP-----FLQAGPSELVIA-NRDMAKALALRNE 163
Query: 278 -NPEEIT---------RQADIIISA-----VGQPNMVRGSWIKPGAVIIDVGINPVE 319
+ + + DI+++A + + A+ ++
Sbjct: 164 LDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGL 220
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 29.0 bits (66), Expect = 2.0
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
+ G RA+V G +G L A V + +R ++ A
Sbjct: 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKV-VAVTR--TNSDLVSLAKECPGIEP 56
>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein
ST initiative, northeast structural genomics consortium,
NESG; 1.80A {Vibrio parahaemolyticus} SCOP: e.65.1.1
Length = 491
Score = 29.5 bits (65), Expect = 2.2
Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 110 AIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFND 169
AI V G+ + G + ++ S G +++++H+P + +V+++
Sbjct: 345 AITVSRGMKSTIPGFGQRYLVTYQDSDGNWLS-GEHTYKLHVPANVPASNFWS-TTVYDE 402
Query: 170 DPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGC 229
+ +L + I + +++ + DG + G ++G E ++ P
Sbjct: 403 NN-------RLMIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYENNWVQTNPGEG 455
Query: 230 IELLHR-YG 237
R YG
Sbjct: 456 WFTYFRFYG 464
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 29.0 bits (66), Expect = 2.2
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 33/117 (28%)
Query: 228 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTKN---- 278
G +E L G +KG A+V+G R+ L+ V + +RT
Sbjct: 103 GFLEALKAGGIPLKGP-ALVLGAGGAGRAVAFA------LREAGLEVWVW-NRTPQRALA 154
Query: 279 ----------PEEITRQADIIISA-----VGQPNM-VRGSWIKPGAVIIDVGINPVE 319
P E R+A ++++A + +D+ P+
Sbjct: 155 LAEEFGLRAVPLEKAREARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLW 211
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 29.1 bits (66), Expect = 2.3
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 277 KNPEEITRQADIIISAVGQPNMVRGSW---------IKPGAVIIDVGINPVEDAKSPRGY 327
+P ++ +AD II+ + ++ +K G+++ID +K
Sbjct: 48 SSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKE---- 103
Query: 328 RLVGDVCYEEACEVASAITPVPGGVG 353
+ + A PV GGVG
Sbjct: 104 --LAKEVEKMGAVFMDA--PVSGGVG 125
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 29.1 bits (64), Expect = 2.6
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 241 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI 282
KR ++G + G+ L L++ D V++ R P+E
Sbjct: 21 MKKRIGIVG-AGTAGLHLGLFLRQHDVDVTVYTDRK--PDEY 59
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
E+L ++ + AVV G N V + L + V
Sbjct: 241 EVLKSLNIPVEKQTAVVSGSGN-VALYCVQKLLHLNVKV 278
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 28.7 bits (65), Expect = 2.9
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
FD+ + +V G + +G A + R A V++ + +T A++ G
Sbjct: 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVT--AELGELGAGN 92
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 28.8 bits (65), Expect = 2.9
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 244 RAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG-----QPNM 298
R V+G S I G+ AAL+L+ V + E ++ +S G QP +
Sbjct: 7 RIAVVGGS-ISGLTAALMLRDAGVDVDVY-------E----RSPQPLSGFGTGIVVQPEL 54
Query: 299 VR 300
V
Sbjct: 55 VH 56
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 28.7 bits (65), Expect = 3.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 231 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
+L +++ K+ +V G N V L + A V
Sbjct: 228 NVLKDLNDNLENKKCLVSGSGN-VAQYLVEKLIEKGAIV 265
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 28.6 bits (64), Expect = 3.4
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH-------------SRTKNPEEITRQA 286
I GK AVV G + VG A L+ ATV + R E +A
Sbjct: 275 IAGKIAVVAGYGD-VGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKA 333
Query: 287 DIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI ++A G +++ ++ A++ ++G
Sbjct: 334 DIFVTATGNYHVINHDHMKAMRHNAIVCNIG 364
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 28.3 bits (64), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISA 292
I+GK AVV S+ +G +AL L R A + ++ SR N E++ A I S
Sbjct: 3 LGIQGKLAVVTAGSSGLGFASALELARNGARL-LLFSR--NREKLEAAASRIASL 54
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 28.3 bits (64), Expect = 3.9
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 238 FDIKGKRAVVIGRSNI--VGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
+KGK VV G S +G+ AA A V+I ++ + + G
Sbjct: 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS--RAQGAEENVKELEKTYG 72
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 28.3 bits (64), Expect = 3.9
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 239 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
D+KGKR ++ G S +G+ A L R A V + + + T + + A G
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIAS---MRADG 56
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 28.2 bits (64), Expect = 4.0
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQA 286
+ G+R +V G +G L A V + SRT+ + +
Sbjct: 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARV-VAVSRTQADLDSLVRE 50
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J
1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K*
1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N
1vou_N 1vow_N 1voy_N ...
Length = 142
Score = 27.6 bits (61), Expect = 4.2
Identities = 26/142 (18%), Positives = 37/142 (26%), Gaps = 26/142 (18%)
Query: 211 RLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVS 270
R RGR G YG + + + + +R
Sbjct: 11 RKQFRGR---MTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYI 67
Query: 271 IVHS---RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGY 327
+ TK P E G S +KPG V+ +V E AK
Sbjct: 68 RIFPDKPVTKKPAETRMGKG-----KGAVEY-WVSVVKPGRVMFEVAGVTEEQAK----- 116
Query: 328 RLVGDVCYEEACEVASAITPVP 349
EA +A P+
Sbjct: 117 ---------EAFRLAGHKLPIQ 129
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.9 bits (63), Expect = 4.6
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
FD++G+ VV G + +G A + R A V++ T + + AD+ G+
Sbjct: 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACV--ADLDQLGSGK 61
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 27.9 bits (63), Expect = 5.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 295
F + G+ A+V G S +G A L A V I +R T +SA G
Sbjct: 25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFIC-ARDAEACADTATR---LSAYGD 78
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 28.2 bits (63), Expect = 5.1
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH-------------SRTKNPEEITRQA 286
I GK AVV G ++ G A L++ A V + + E++ +A
Sbjct: 263 IAGKVAVVAGYGDV-GKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEA 321
Query: 287 DIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI ++ G +++ +K A++ ++G
Sbjct: 322 DIFVTTTGNKDIIMLDHMKKMKNNAIVCNIG 352
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 27.9 bits (63), Expect = 5.3
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 234 HRYG-FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV 272
+G ++G V G N V L E A + +
Sbjct: 164 EAFGSDSLEGLAVSVQGLGN-VAKALCKKLNTEGAKLVVT 202
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 27.9 bits (63), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 12/39 (30%)
Query: 241 KGKRAVV------IGRSNIVGMPAALLLQREDATVSIVH 273
K ++A+V IGR+ AA+ RE A V+I +
Sbjct: 48 KDRKALVTGGDSGIGRA------AAIAYAREGADVAINY 80
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 27.9 bits (63), Expect = 5.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEE 281
FD+ GKRA++ G S +G AL A V++ + +
Sbjct: 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV 71
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 241 KGKRAVV------IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEE 281
KGK ++ IGR+ ++ +E A ++I + EE
Sbjct: 46 KGKNVLITGGDSGIGRA------VSIAFAKEGANIAIAYL----DEE 82
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 27.6 bits (62), Expect = 6.9
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 240 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-------------RTKNPEEITRQA 286
GK+ VV G VG L+ + V + R E+ RQ
Sbjct: 218 FGGKQVVVCGYGE-VGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQV 276
Query: 287 DIIISAVGQPNMVRG---SWIKPGAVIIDVG 314
DI+I+ G N+V +K ++ ++G
Sbjct: 277 DIVITCTGNKNVVTREHLDRMKNSCIVCNMG 307
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 27.6 bits (62), Expect = 7.5
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 224 CTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 269
T G + +L R+G +G R V G N V A A V
Sbjct: 210 ATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGN-VAQYAIEKAMEFGARV 258
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 27.5 bits (62), Expect = 7.6
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQ 285
D+ GK +++ G S+ +G A LL + + V I S + + +
Sbjct: 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNA 57
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 27.4 bits (62), Expect = 7.8
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
FD+ GK A+V G + +G A L A V I++ + ++ G
Sbjct: 5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARV-ILNDIRATLLAESVDT---LTRKG 57
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 27.6 bits (62), Expect = 8.0
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 237 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------------EEITR 284
++ VIG I G A+ V + + K +E+ +
Sbjct: 136 ARELNRLTLGVIGTGRI-GSRVAMYGLAFGMKV-LCYDVVKREDLKEKGCVYTSLDELLK 193
Query: 285 QADII 289
++D+I
Sbjct: 194 ESDVI 198
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 27.2 bits (61), Expect = 8.4
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
+ G+ AVV G S +G A L A V + + + R+ I A G
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE----IVAAG 77
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 27.1 bits (61), Expect = 8.5
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQA 286
F + G A V G + +G+ A + I+ R + Q
Sbjct: 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARL-ILIDREAAALDRAAQE 54
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 27.3 bits (61), Expect = 9.0
Identities = 6/51 (11%), Positives = 14/51 (27%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADI 288
K +V+G S +G + + + R + +
Sbjct: 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKD 68
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 27.1 bits (61), Expect = 9.1
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 238 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 294
K +V G + +G+ + A V++++ + E+T + + G
Sbjct: 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK---VGKEFG 63
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 27.0 bits (60), Expect = 9.8
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 297 NMVRGSWIKPGAVIIDVG 314
+ ++++ I+D+G
Sbjct: 21 YPIIHNYLQEDDEILDIG 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,781,329
Number of extensions: 366984
Number of successful extensions: 1246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 168
Length of query: 375
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 280
Effective length of database: 4,049,298
Effective search space: 1133803440
Effective search space used: 1133803440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)