BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017187
(375 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224086974|ref|XP_002308022.1| predicted protein [Populus trichocarpa]
gi|222853998|gb|EEE91545.1| predicted protein [Populus trichocarpa]
Length = 376
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/373 (80%), Positives = 340/373 (91%), Gaps = 3/373 (0%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GLK I+KKG+G EMGF GGG INWFPGHMAAATRAI+ RLK++DLVIEVRDSRIPLSS
Sbjct: 4 GLKGIVKKGIG--EMGFNAGGGAINWFPGHMAAATRAIRDRLKLADLVIEVRDSRIPLSS 61
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
+ LQPQL+AKRRVIALNKKDLANPNI++KW+R+FDSCKQD I I+AHS+SSVQKLLE+
Sbjct: 62 TNEDLQPQLAAKRRVIALNKKDLANPNIMHKWIRYFDSCKQDCIPISAHSKSSVQKLLEV 121
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRF VQ K KRATVGPLPGVT
Sbjct: 122 VEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFAVQGKKKRATVGPLPGVT 181
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIAH+PSIYVLDTPGVLVPSIPDIETGLKL+L+GS+KDSVVGEERIA+YLLAVL
Sbjct: 182 QDIAGYKIAHKPSIYVLDTPGVLVPSIPDIETGLKLSLAGSVKDSVVGEERIARYLLAVL 241
Query: 242 NTRGTPLHWRHLNNR-TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
NTRGTPLHW+H NNR + + E+E KH+Y+ KDLRP RKPP+ SDV Y+E+LVT VQ
Sbjct: 242 NTRGTPLHWKHWNNRKMDGIRYESEEKHKYDPKDLRPNMRKPPSVSDVVYVENLVTEVQC 301
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
A++ +L+EF+GNVEDENDLE+LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 302 AMYKTLAEFNGNVEDENDLENLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGKL 361
Query: 361 GPFILDDVPDANS 373
G FILDDVP+ N+
Sbjct: 362 GCFILDDVPETNT 374
>gi|356504771|ref|XP_003521168.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/370 (80%), Positives = 332/370 (89%), Gaps = 1/370 (0%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GLK ++KKGLGLG+M F GGG I WFPGHMAAATRAI+HRLK++DLVIEVRD+RIPLSS
Sbjct: 3 GLKELLKKGLGLGDMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPLSS 62
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRRV+ALNKKDLANPNI++KW +F++C Q+ +AINAHS+SSV+KLLE+
Sbjct: 63 ANADLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFETCNQNCVAINAHSKSSVKKLLEV 122
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKEVI +EPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRA VGPLPGVT
Sbjct: 123 VEFKLKEVICKEPTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVT 182
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAGFKIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+GS+KDSVVGEERI QYLLAVL
Sbjct: 183 QDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIVQYLLAVL 242
Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
NTRGTPLHW+HLNN R + + E E HEY+LK+L+PKRR PN SD+ Y+EDLV VQR
Sbjct: 243 NTRGTPLHWKHLNNRRIDGIEYEAEENHEYSLKNLKPKRRNLPNRSDLVYVEDLVMQVQR 302
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
AL+ SLSEF+GNVEDE+DLESLI+ QF LQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 303 ALYSSLSEFNGNVEDESDLESLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKL 362
Query: 361 GPFILDDVPD 370
GPFILDDVPD
Sbjct: 363 GPFILDDVPD 372
>gi|225441866|ref|XP_002284228.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Vitis vinifera]
Length = 376
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 311/371 (83%), Positives = 341/371 (91%), Gaps = 3/371 (0%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
G++ ++KKGLG EMGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSS
Sbjct: 3 GVRSMVKKGLG--EMGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSS 60
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LS KRRVIALNKKDLANPNI++KW +FDSCKQD I+INAHSRSSV+KLLEL
Sbjct: 61 ANEDLQPSLSGKRRVIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLEL 120
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VELKL+EVISREPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVT
Sbjct: 121 VELKLREVISREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVT 180
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAGFKIAH+PSIYVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVL
Sbjct: 181 QDIAGFKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVL 240
Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
NTR TPLHWRHLNN R E ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ
Sbjct: 241 NTRSTPLHWRHLNNRRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQC 300
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
ALHV+LSEF+GN+E+ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKL
Sbjct: 301 ALHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKL 360
Query: 361 GPFILDDVPDA 371
GPFILDDVPD+
Sbjct: 361 GPFILDDVPDS 371
>gi|225441868|ref|XP_002284232.1| PREDICTED: mitochondrial GTPase 1 isoform 2 [Vitis vinifera]
Length = 377
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 311/370 (84%), Positives = 340/370 (91%), Gaps = 3/370 (0%)
Query: 3 LKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA 62
L+ ++KKGLG EMGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSSA
Sbjct: 5 LRSMVKKGLG--EMGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSA 62
Query: 63 HPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV 122
+ LQP LS KRRVIALNKKDLANPNI++KW +FDSCKQD I+INAHSRSSV+KLLELV
Sbjct: 63 NEDLQPSLSGKRRVIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLELV 122
Query: 123 ELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ 182
ELKL+EVISREPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVTQ
Sbjct: 123 ELKLREVISREPTLLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQ 182
Query: 183 DIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
DIAGFKIAH+PSIYVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVLN
Sbjct: 183 DIAGFKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLN 242
Query: 243 TRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRA 301
TR TPLHWRHLNN R E ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ A
Sbjct: 243 TRSTPLHWRHLNNRRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQCA 302
Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLG 361
LHV+LSEF+GN+E+ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKLG
Sbjct: 303 LHVTLSEFNGNLEEENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKLG 362
Query: 362 PFILDDVPDA 371
PFILDDVPD+
Sbjct: 363 PFILDDVPDS 372
>gi|356572022|ref|XP_003554169.1| PREDICTED: mitochondrial GTPase 1-like [Glycine max]
Length = 377
Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/370 (79%), Positives = 329/370 (88%), Gaps = 1/370 (0%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GLK ++KKGLGLG+M F GGG I WFPGHMAAATRAI+HRLK++DLVIEVRD+RIP SS
Sbjct: 3 GLKELLKKGLGLGDMAFNAGGGAITWFPGHMAAATRAIRHRLKLADLVIEVRDARIPFSS 62
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRRV+ALNKKDLANPNI++KW +F+SC Q+ +AINAHS SSV+KLLE+
Sbjct: 63 ANADLQPHLSAKRRVVALNKKDLANPNIMHKWTHYFESCNQNCVAINAHSMSSVKKLLEV 122
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKEVI REPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRA VGPLPGVT
Sbjct: 123 VEFKLKEVICREPTLLVMVVGVPNVGKSALINSIHQIAKSRFPVQEKMKRAAVGPLPGVT 182
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAGFKIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+ S+KDSVVGEERIAQYLLAVL
Sbjct: 183 QDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAESVKDSVVGEERIAQYLLAVL 242
Query: 242 NTRGTPLHWRHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
+TRGTPLHW HLNN R + + E E EY+LK+L+PKRR PN SD+ Y+EDLV GVQR
Sbjct: 243 DTRGTPLHWNHLNNRRIDGIEYEAEENPEYSLKNLKPKRRNLPNRSDLVYVEDLVMGVQR 302
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
AL+ +L+EFDGNVEDE+DLESLI+ QF LQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 303 ALYSTLTEFDGNVEDESDLESLIDLQFSALQKALKIPHKASEARLMVSKKFLTLFRTGKL 362
Query: 361 GPFILDDVPD 370
GPFILDDVP+
Sbjct: 363 GPFILDDVPN 372
>gi|297739639|emb|CBI29821.3| unnamed protein product [Vitis vinifera]
Length = 362
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/357 (85%), Positives = 330/357 (92%), Gaps = 1/357 (0%)
Query: 16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
MGF KGGG INWFPGHMAAATRAI+HRLK+SDLVIEVRD+R+PLSSA+ LQP LS KRR
Sbjct: 1 MGFNKGGGAINWFPGHMAAATRAIRHRLKVSDLVIEVRDARLPLSSANEDLQPSLSGKRR 60
Query: 76 VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
VIALNKKDLANPNI++KW +FDSCKQD I+INAHSRSSV+KLLELVELKL+EVISREPT
Sbjct: 61 VIALNKKDLANPNIMHKWTHYFDSCKQDCISINAHSRSSVKKLLELVELKLREVISREPT 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
LLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVTQDIAGFKIAH+PSI
Sbjct: 121 LLVMVVGVPNVGKSALINSIHQIATSRFPVQEKMKRATVGPLPGVTQDIAGFKIAHQPSI 180
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
YVLDTPGVLVPSIPDIETGLKLAL+GS+KDSVVGEERIAQYLLAVLNTR TPLHWRHLNN
Sbjct: 181 YVLDTPGVLVPSIPDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRSTPLHWRHLNN 240
Query: 256 -RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVE 314
R E ++E E+KH+YNLKDL P +RK PN SDV YIEDLVT VQ ALHV+LSEF+GN+E
Sbjct: 241 RRIEELRNEYEDKHDYNLKDLLPNKRKLPNRSDVKYIEDLVTEVQCALHVTLSEFNGNLE 300
Query: 315 DENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDA 371
+ENDLESLIEQQFE LQ+A+KIPHKASEAR MVSKK LTLFRTGKLGPFILDDVPD+
Sbjct: 301 EENDLESLIEQQFEKLQKAMKIPHKASEARTMVSKKLLTLFRTGKLGPFILDDVPDS 357
>gi|297824129|ref|XP_002879947.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
gi|297325786|gb|EFH56206.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/374 (77%), Positives = 332/374 (88%), Gaps = 2/374 (0%)
Query: 1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
M LK+ +KKGL +G M F K G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3 MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61
Query: 61 SAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE 120
SA+ LQ Q+SAKRR+IALNKKDLANPN+LNKW RHF+S KQD IAINAHSRSSV KLL+
Sbjct: 62 SANEDLQSQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLD 121
Query: 121 LVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
LVELKLKEVI+REPTLLVMVVGVPNVGKSALINS+HQIA +RFPVQE+ KRATVGPLPGV
Sbjct: 122 LVELKLKEVIAREPTLLVMVVGVPNVGKSALINSVHQIAAARFPVQERLKRATVGPLPGV 181
Query: 181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
TQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQY LA+
Sbjct: 182 TQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAI 241
Query: 241 LNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
LN RGTPLHW++L R E ++ +K YNLKDLR +R K P++S + Y+ D+++ VQ
Sbjct: 242 LNIRGTPLHWKYLVEGRNEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDMISEVQ 301
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
R+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTG+
Sbjct: 302 RSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGR 361
Query: 360 LGPFILDDVPDANS 373
LGPFILDDVP+ +
Sbjct: 362 LGPFILDDVPETET 375
>gi|30688739|ref|NP_850353.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|20466544|gb|AAM20589.1| unknown protein [Arabidopsis thaliana]
gi|23198342|gb|AAN15698.1| unknown protein [Arabidopsis thaliana]
gi|32396052|gb|AAP41843.1| short integuments 2 [Arabidopsis thaliana]
gi|330254920|gb|AEC10014.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 386
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/374 (77%), Positives = 331/374 (88%), Gaps = 2/374 (0%)
Query: 1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
M LK+ +KKGL +G M F K G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3 MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61
Query: 61 SAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE 120
SA+ LQ Q+SAKRR+IALNKKDLANPN+LNKW RHF+S KQD IAINAHSRSSV KLL+
Sbjct: 62 SANEDLQSQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLD 121
Query: 121 LVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180
LVELKLKEVI+REPTLLVMVVGVPNVGKSALINSIHQIA +RFPVQE+ KRATVGPLPGV
Sbjct: 122 LVELKLKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGV 181
Query: 181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
TQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQY LA+
Sbjct: 182 TQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAI 241
Query: 241 LNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
LN RGTPLHW++L E ++ +K YNLKDLR +R K P++S + Y+ D+++ VQ
Sbjct: 242 LNIRGTPLHWKYLVEGINEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDMISEVQ 301
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
R+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTLFRTG+
Sbjct: 302 RSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTLFRTGR 361
Query: 360 LGPFILDDVPDANS 373
LGPFILDDVP+ +
Sbjct: 362 LGPFILDDVPETET 375
>gi|2618702|gb|AAB84349.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/379 (76%), Positives = 331/379 (87%), Gaps = 7/379 (1%)
Query: 1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
M LK+ +KKGL +G M F K G INWFPGHMAAATRAI++RLK+SDLVIEVRD+RIPLS
Sbjct: 3 MMLKKTVKKGL-IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLS 61
Query: 61 SAHPGLQPQLSAKRRVIALNKKDLANPNILN-----KWVRHFDSCKQDYIAINAHSRSSV 115
SA+ LQ Q+SAKRR+IALNKKDLANPN+LN KW RHF+S KQD IAINAHSRSSV
Sbjct: 62 SANEDLQSQMSAKRRIIALNKKDLANPNVLNVIRFFKWTRHFESSKQDCIAINAHSRSSV 121
Query: 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG 175
KLL+LVELKLKEVI+REPTLLVMVVGVPNVGKSALINSIHQIA +RFPVQE+ KRATVG
Sbjct: 122 MKLLDLVELKLKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVG 181
Query: 176 PLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQ 235
PLPGVTQDIAGFKIAHRPSIYVLD+PGVLVPSIPDIETGLKLALSGS+KDSVVGEERIAQ
Sbjct: 182 PLPGVTQDIAGFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQ 241
Query: 236 YLLAVLNTRGTPLHWRHL-NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDL 294
Y LA+LN RGTPLHW++L E ++ +K YNLKDLR +R K P++S + Y+ D+
Sbjct: 242 YFLAILNIRGTPLHWKYLVEGINEGPHADCIDKPSYNLKDLRHQRTKQPDSSALHYVGDM 301
Query: 295 VTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTL 354
++ VQR+L+++LSEFDG+ EDENDLE LIEQQFEVLQ+ALKIPHKASEARLMVSKKFLTL
Sbjct: 302 ISEVQRSLYITLSEFDGDTEDENDLECLIEQQFEVLQKALKIPHKASEARLMVSKKFLTL 361
Query: 355 FRTGKLGPFILDDVPDANS 373
FRTG+LGPFILDDVP+ +
Sbjct: 362 FRTGRLGPFILDDVPETET 380
>gi|449463330|ref|XP_004149387.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
gi|449503786|ref|XP_004162176.1| PREDICTED: mitochondrial GTPase 1-like [Cucumis sativus]
Length = 375
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 289/370 (78%), Positives = 322/370 (87%), Gaps = 4/370 (1%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
G+ ++KK LG +M FT GGG INWFPGHMAAATRAI+HRLK++D+VIEVRDSRIPLSS
Sbjct: 3 GITGVVKKALG--DMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 60
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP L++KRRVIALNKKDLANPNI+NKWV FDSC QD + INAHS+SSV+KLLEL
Sbjct: 61 ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 120
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKE ISREPTLLVMVVGVPNVGKSALINSIHQIA RFPVQEK KRATVGPLPGVT
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEKRKRATVGPLPGVT 180
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIAH+PSIYVLDTPGVLVPSI DIETGLKLAL+GS+KD+VVGEERIAQYLLAVL
Sbjct: 181 QDIAGYKIAHQPSIYVLDTPGVLVPSIQDIETGLKLALAGSVKDAVVGEERIAQYLLAVL 240
Query: 242 NTRGTPLHW-RHLNN-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
N+R TP HW RHLNN R E + E E +H++NL DL+PKRR PPN SDV Y+EDLVT VQ
Sbjct: 241 NSRRTPFHWRRHLNNRRVEGIRYEPEERHKFNLNDLQPKRRAPPNKSDVVYVEDLVTEVQ 300
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGK 359
L+ +LSEFDGNVEDEN LESLIE QFE LQ+A+K+ HKA+EARL VSKK LTLFR GK
Sbjct: 301 CTLYTTLSEFDGNVEDENGLESLIEVQFEALQKAMKVSHKAAEARLRVSKKLLTLFRAGK 360
Query: 360 LGPFILDDVP 369
LG FILDDVP
Sbjct: 361 LGQFILDDVP 370
>gi|255585496|ref|XP_002533440.1| GTP binding protein, putative [Ricinus communis]
gi|223526714|gb|EEF28947.1| GTP binding protein, putative [Ricinus communis]
Length = 375
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 299/373 (80%), Positives = 337/373 (90%), Gaps = 3/373 (0%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL+ I+KKGLG EM F GG INWFPGHMAAATRAI+ RLK++DLVIEVRDSRIPLSS
Sbjct: 4 GLREIVKKGLG--EMSFNSEGGVINWFPGHMAAATRAIRSRLKLADLVIEVRDSRIPLSS 61
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP L++KRRVIALNKKDLAN N+++KWV +F+SCKQD I +N+HS+SSV KLLEL
Sbjct: 62 ANNDLQPHLNSKRRVIALNKKDLANANVMHKWVHYFNSCKQDSIPVNSHSKSSVMKLLEL 121
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIA SRFPVQEK KRATVGPLPGVT
Sbjct: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIASSRFPVQEKKKRATVGPLPGVT 181
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIAH+PSIYVLDTPGVLVPSIPDIETGLKLAL+GS+KDS VGEERIAQYLLAVL
Sbjct: 182 QDIAGYKIAHQPSIYVLDTPGVLVPSIPDIETGLKLALAGSVKDSAVGEERIAQYLLAVL 241
Query: 242 NTRGTPLHWRHLNNR-TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
NTRGTPLHWRH NNR + + +++KHE NLKDLRPKR++PPN SDV Y+ED+VT VQ
Sbjct: 242 NTRGTPLHWRHWNNRKMDGIKYNSQDKHECNLKDLRPKRKRPPNLSDVLYVEDMVTEVQC 301
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
+L+ +L+EF+GNVEDENDLE+LIEQQF VLQ+ALKIPHKASEARLMVSKKFLTLFRTGKL
Sbjct: 302 SLYKTLAEFNGNVEDENDLENLIEQQFAVLQKALKIPHKASEARLMVSKKFLTLFRTGKL 361
Query: 361 GPFILDDVPDANS 373
G FILD+VP+ NS
Sbjct: 362 GHFILDNVPETNS 374
>gi|357509687|ref|XP_003625132.1| Mitochondrial GTPase [Medicago truncatula]
gi|355500147|gb|AES81350.1| Mitochondrial GTPase [Medicago truncatula]
Length = 373
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/358 (78%), Positives = 317/358 (88%), Gaps = 2/358 (0%)
Query: 15 EMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
EM F GGG INWFPGHMAAATRAI++RLK++DLVIEVRD+RIP+SS + LQP LS KR
Sbjct: 14 EMDFNTGGGLINWFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKR 73
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP 134
RV+ALNKKDLANPNI++KWV +F+SCKQD I INAHS+SSV KLLELVELKLKE IS+EP
Sbjct: 74 RVVALNKKDLANPNIMHKWVNYFESCKQDCIPINAHSKSSVTKLLELVELKLKEAISKEP 133
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
TLLVMVVGVPNVGKS LINSIHQIA SRFPVQEK KRA VGPLPGVTQDIAGFKIA++PS
Sbjct: 134 TLLVMVVGVPNVGKSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDIAGFKIANKPS 193
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
IYVLDTPGVLVPSI DIETGLKLAL+GS+KDSVVGEERIAQYLLAVLNTRGTPLHW+H+N
Sbjct: 194 IYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLLAVLNTRGTPLHWKHIN 253
Query: 255 N-RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNV 313
N R + E + YNLK+L+ +RR PN SD+ Y+ED+V GVQ AL+ +L+EFDGNV
Sbjct: 254 NRRVDGITYEAKENDRYNLKNLK-QRRGSPNRSDIVYVEDVVVGVQNALYSTLAEFDGNV 312
Query: 314 EDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDA 371
EDE+DLE+LI+QQF LQ+ALKIPHKASEARLMVSKKFLTLFR GKLGPFILDDVPDA
Sbjct: 313 EDESDLENLIDQQFGTLQKALKIPHKASEARLMVSKKFLTLFRAGKLGPFILDDVPDA 370
>gi|223973159|gb|ACN30767.1| unknown [Zea mays]
Length = 369
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/374 (65%), Positives = 297/374 (79%), Gaps = 12/374 (3%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ GEM F GGG +NWFPGHMAAA+RAI+ RLK++DLVIEVRD+RIPLSS
Sbjct: 3 GLTRAAKRA---GEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL
Sbjct: 60 ANEDLQPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCISINAHSSSSVNQLLGF 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
ELKLKE IS+EPTLL+M+VGVPNVGKSALINSIH+IA SRFP ++K KRATVGPLPGVT
Sbjct: 120 AELKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++
Sbjct: 180 QDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLF 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
N + TPLHW L +R E E + NK + +L RR N SD Y++DLVT VQ
Sbjct: 240 NIKKTPLHWERLLHRKEEWCEEICSSNKKDNSL------RRTRLNNSDAVYVQDLVTEVQ 293
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTG 358
RAL + F GN+E+E++LE+LI+ Q L++ +IPHK E + SKK LTLFR+G
Sbjct: 294 RALCRTFLNFTGNIEEESELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLLTLFRSG 353
Query: 359 KLGPFILDDVPDAN 372
KLGPFILDD+PD +
Sbjct: 354 KLGPFILDDLPDGS 367
>gi|226499776|ref|NP_001151234.1| GTPase family protein [Zea mays]
gi|195645228|gb|ACG42082.1| GTPase family protein [Zea mays]
Length = 369
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/374 (65%), Positives = 297/374 (79%), Gaps = 12/374 (3%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ GEM F GGG +NWFPGHMAAA+RAI+ RLK++DL+IEVRD+RIPLSS
Sbjct: 3 GLTRAAKRA---GEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLIIEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL
Sbjct: 60 ANEDLQPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCISINAHSSSSVNQLLGF 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
ELKLKE IS+EPTLL+M+VGVPNVGKSALINSIH+IA SRFP ++K KRATVGPLPGVT
Sbjct: 120 AELKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++
Sbjct: 180 QDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLF 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
N + TPLHW L +R E E + NK + +L RR N SD Y++DLVT VQ
Sbjct: 240 NIKKTPLHWERLLHRKEEWCEEICSSNKKDNSL------RRTRLNNSDAVYVQDLVTEVQ 293
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTG 358
RAL + F GN+E+E++LE+LI+ Q L++ +IPHK E + SKK LTLFR+G
Sbjct: 294 RALCRTFLNFTGNIEEESELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLLTLFRSG 353
Query: 359 KLGPFILDDVPDAN 372
KLGPFILDD+PD +
Sbjct: 354 KLGPFILDDLPDGS 367
>gi|242034429|ref|XP_002464609.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
gi|241918463|gb|EER91607.1| hypothetical protein SORBIDRAFT_01g021800 [Sorghum bicolor]
Length = 369
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/362 (66%), Positives = 293/362 (80%), Gaps = 9/362 (2%)
Query: 14 GEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAK 73
GEM F GGG +NWFPGHMAAA+RAI+ RLK++DLVIEVRD+RIPLSSA+ LQP LSAK
Sbjct: 12 GEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSSANEDLQPVLSAK 71
Query: 74 RRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE 133
RR++ALNKKDLANPNI+N+W+ HF+SCKQD I++NAHS +SV +LL ELKLKE IS+E
Sbjct: 72 RRILALNKKDLANPNIMNRWLNHFESCKQDCISVNAHSSNSVNQLLGFAELKLKEAISKE 131
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
PTLL+M+VGVPNVGKSALINSIH+IA SRFPV++K KRATVGPLPGVTQDIAG+KIA +P
Sbjct: 132 PTLLIMLVGVPNVGKSALINSIHRIATSRFPVKDKKKRATVGPLPGVTQDIAGYKIATQP 191
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
SIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++LN R TPLHW L
Sbjct: 192 SIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWERL 251
Query: 254 NNRTEVSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDG 311
+R E E + +K + +L RRK N SD Y++DLV+ VQR L + F G
Sbjct: 252 LHREEELCEEICSSDKKDNSL------RRKRLNNSDAVYVQDLVSEVQRTLCRTFLNFTG 305
Query: 312 NVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKLGPFILDDVPD 370
N +E++LE+LI+ Q L++ +IPHK E + SKK LTLFR+GKLGPFILDD+PD
Sbjct: 306 NTVEESELETLIDMQLVALRKVFRIPHKPFDETQGPTSKKLLTLFRSGKLGPFILDDLPD 365
Query: 371 AN 372
A+
Sbjct: 366 AS 367
>gi|414871397|tpg|DAA49954.1| TPA: GTPase family protein [Zea mays]
Length = 368
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/374 (65%), Positives = 296/374 (79%), Gaps = 13/374 (3%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ GEM F GGG +NWFPGHMAAA+RAI+ RLK++DLVIEVRD+RIPLSS
Sbjct: 3 GLTRAAKRA---GEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL
Sbjct: 60 ANEDLQPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCISINAHSSSSVNQLLGF 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
ELKLKE IS+EPTLL+M+VGVPNVGKSALINSIH+IA SRFP ++K KRATVGPLPGVT
Sbjct: 120 AELKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++
Sbjct: 180 QDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLF 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
N + TPLHW L +R E E + NK + +L RR N SD Y++DLVT VQ
Sbjct: 240 NIKKTPLHWERLLHRKEEWCEEICSSNKKDNSL------RRTRLNNSDAVYVQDLVTEVQ 293
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTG 358
RAL + F GN+E+E++LE+LI+ Q L++ +IPHK E + SKK LTLFR+G
Sbjct: 294 RALCRTFLNFTGNIEEESELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLLTLFRSG 353
Query: 359 KLGPFILDDVPDAN 372
LGPFILDD+PD +
Sbjct: 354 -LGPFILDDLPDGS 366
>gi|218188297|gb|EEC70724.1| hypothetical protein OsI_02108 [Oryza sativa Indica Group]
Length = 370
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/370 (66%), Positives = 295/370 (79%), Gaps = 5/370 (1%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ EM F GGG +NWFPGHMAAA+RAI+ RLK++DLV+EVRD+RIPLSS
Sbjct: 3 GLARAGKRA---SEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP L++KRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL L
Sbjct: 60 ANEDLQPVLASKRRILALNKKDLANPNIMNRWLHHFESCKQDCISINAHSTSSVSQLLGL 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKE IS+EPTLLVMVVGVPNVGKSALINSIH+I SRFPVQ+K KRATVGPLPGVT
Sbjct: 120 VEFKLKEAISKEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KI+ +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++L
Sbjct: 180 QDIAGYKISSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLL 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRA 301
N R TPLHW L R E E N +E + +D +RR+ PN SD Y++D+V VQR
Sbjct: 240 NIRKTPLHWERLVYRREQFNEEAFNSNEKDYRDSP-RRRRRPNNSDALYVQDMVMEVQRT 298
Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKL 360
L + +F N EDEN+LESLI+ Q L++ +IPHK E SKK LTLFR+GKL
Sbjct: 299 LCSTFMDFADNTEDENELESLIDSQLVALRKVFRIPHKPFDETHGPASKKLLTLFRSGKL 358
Query: 361 GPFILDDVPD 370
GPFILDD+PD
Sbjct: 359 GPFILDDLPD 368
>gi|115485369|ref|NP_001067828.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|62701701|gb|AAX92774.1| short integuments 2 [Oryza sativa Japonica Group]
gi|77550521|gb|ABA93318.1| GTP-binding proteins, putative, expressed [Oryza sativa Japonica
Group]
gi|113645050|dbj|BAF28191.1| Os11g0447300 [Oryza sativa Japonica Group]
gi|222628343|gb|EEE60475.1| hypothetical protein OsJ_13737 [Oryza sativa Japonica Group]
Length = 370
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/370 (66%), Positives = 295/370 (79%), Gaps = 5/370 (1%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ EM F GGG +NWFPGHMAAA+RAI+ RLK++DLV+EVRD+RIPLSS
Sbjct: 3 GLARAGKRA---SEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP L++KRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL L
Sbjct: 60 ANEDLQPVLASKRRILALNKKDLANPNIMNRWLHHFESCKQDCISINAHSTSSVSQLLGL 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VE KLKE IS+EPTLLVMVVGVPNVGKSALINSIH+I SRFPVQ+K KRATVGPLPGVT
Sbjct: 120 VEFKLKEAISKEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KI+ +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++L
Sbjct: 180 QDIAGYKISSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLL 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRA 301
N R TPLHW L R E + N +E + +D +RR+ PN SD Y++D+V VQR
Sbjct: 240 NIRKTPLHWERLVYRREQFNEDAFNSNEKDYRDSP-RRRRRPNNSDALYVQDMVMEVQRT 298
Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKL 360
L + +F N EDEN+LESLI+ Q L++ +IPHK E SKK LTLFR+GKL
Sbjct: 299 LCSTFMDFADNTEDENELESLIDSQLVALRKVFRIPHKPFDETHGPASKKLLTLFRSGKL 358
Query: 361 GPFILDDVPD 370
GPFILDD+PD
Sbjct: 359 GPFILDDLPD 368
>gi|326516022|dbj|BAJ88034.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 370
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/370 (64%), Positives = 290/370 (78%), Gaps = 5/370 (1%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ GEM GGG INWFPGHMAAA+RAI+ RLK++DLVIEVRD+RIPLSS
Sbjct: 3 GLTRAGKRA---GEMALNAGGGAINWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP L+AKRR++ALNKKDLANPNI+N W+ HF S KQD I++NAHS +S+ +LL L
Sbjct: 60 ANEDLQPVLAAKRRILALNKKDLANPNIMNMWLDHFQSRKQDCISLNAHSSNSINQLLGL 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
VELKL+E I +EPTLLVMVVGVPNVGKSALIN+IH+IA SRFPV +K KRA VGPLPGVT
Sbjct: 120 VELKLRESILKEPTLLVMVVGVPNVGKSALINAIHRIANSRFPVNDKIKRARVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++L
Sbjct: 180 QDIAGYKIASQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLL 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRA 301
N R TPLHW L +R E E + E +RR+ N SD Y++DLV VQR
Sbjct: 240 NIRKTPLHWERLLHRREEFDEEPDVSCEKGSSG-SLRRRRRFNNSDALYVQDLVIEVQRT 298
Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKL 360
L + EF GN++++N+LESLI+ Q L++ +IPHK ++ SKK LTLFR+GKL
Sbjct: 299 LCSTAMEFTGNLDEDNELESLIDSQLVALRKVFRIPHKPLDDSHGPASKKLLTLFRSGKL 358
Query: 361 GPFILDDVPD 370
GPFILDD+PD
Sbjct: 359 GPFILDDLPD 368
>gi|414871398|tpg|DAA49955.1| TPA: GTPase family protein, mRNA [Zea mays]
Length = 373
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/357 (64%), Positives = 281/357 (78%), Gaps = 12/357 (3%)
Query: 2 GLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS 61
GL R K+ GEM F GGG +NWFPGHMAAA+RAI+ RLK++DLVIEVRD+RIPLSS
Sbjct: 3 GLTRAAKRA---GEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVIEVRDARIPLSS 59
Query: 62 AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121
A+ LQP LSAKRR++ALNKKDLANPNI+N+W+ HF+SCKQD I+INAHS SSV +LL
Sbjct: 60 ANEDLQPVLSAKRRILALNKKDLANPNIMNRWLNHFESCKQDCISINAHSSSSVNQLLGF 119
Query: 122 VELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT 181
ELKLKE IS+EPTLL+M+VGVPNVGKSALINSIH+IA SRFP ++K KRATVGPLPGVT
Sbjct: 120 AELKLKEAISKEPTLLIMLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVT 179
Query: 182 QDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
QDIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++
Sbjct: 180 QDIAGYKIATQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLF 239
Query: 242 NTRGTPLHWRHLNNRTEVSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQ 299
N + TPLHW L +R E E + NK + +L RR N SD Y++DLVT VQ
Sbjct: 240 NIKKTPLHWERLLHRKEEWCEEICSSNKKDNSL------RRTRLNNSDAVYVQDLVTEVQ 293
Query: 300 RALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLF 355
RAL + F GN+E+E++LE+LI+ Q L++ +IPHK E + SKK LTLF
Sbjct: 294 RALCRTFLNFTGNIEEESELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLLTLF 350
>gi|357156842|ref|XP_003577594.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 372
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/369 (64%), Positives = 289/369 (78%), Gaps = 2/369 (0%)
Query: 3 LKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA 62
++ + + G EM F GGG INWFPGHMAAA+RAI+ RLK++DLVIEVRDSRIPLSSA
Sbjct: 1 MRGLTRAGKRASEMAFNAGGGVINWFPGHMAAASRAIRDRLKLADLVIEVRDSRIPLSSA 60
Query: 63 HPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV 122
+ LQP LSAKRR++ALNKKDLANPN++N W+ HF+S KQD I+IN+HS +S+ +LL LV
Sbjct: 61 NEDLQPVLSAKRRILALNKKDLANPNMMNMWLDHFESRKQDCISINSHSSNSINQLLGLV 120
Query: 123 ELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ 182
ELKLKE I +EPTLLVMVVGVPNVGKSALINSIH+IA SRFPV +K KRATVGPLPGVTQ
Sbjct: 121 ELKLKEAILKEPTLLVMVVGVPNVGKSALINSIHRIARSRFPVNDKIKRATVGPLPGVTQ 180
Query: 183 DIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
DIAG+KIA +PSIYVLDTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++LN
Sbjct: 181 DIAGYKIASQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLN 240
Query: 243 TRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRAL 302
R TPLHW L +R E E + +D +RRK N SD Y++DLV VQ L
Sbjct: 241 IRKTPLHWERLLHRREEFDEEPGHSCGKGSRD-SLRRRKRINNSDALYVQDLVMEVQATL 299
Query: 303 HVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLFRTGKLG 361
+ EF GN+++E LESLI+ Q L++ +IPH+ E+ +KK LTLFR GKLG
Sbjct: 300 CSTAMEFTGNIDEETGLESLIDAQLLALRKVFRIPHRPLDESHGPTAKKLLTLFRAGKLG 359
Query: 362 PFILDDVPD 370
PF+LDD+PD
Sbjct: 360 PFVLDDLPD 368
>gi|168023788|ref|XP_001764419.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684283|gb|EDQ70686.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 179/370 (48%), Positives = 244/370 (65%), Gaps = 45/370 (12%)
Query: 8 KKGLGLGEMGFTKGGGN---INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP 64
KKGL G G+ INW+PGHMA+AT+AI+ R+K+ DLV+EVRD+RIPLSSA+
Sbjct: 3 KKGL----FGLASKAGDVAAINWYPGHMASATKAIRERIKVVDLVVEVRDARIPLSSANS 58
Query: 65 GLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL 124
Q L K+R+I NK DLANPN+ KW HF Q + +NAH SV+K+LE+
Sbjct: 59 EFQDLLERKKRLIVCNKMDLANPNMTLKWESHFQKLNQRLVFVNAHQTKSVRKMLEVAWD 118
Query: 125 KLKEVISREPTLLVMVVGVPNVGKSALINSI----HQIALSRFPVQEKTKRATVGPLPGV 180
L+E +++EPTLL+M+VG+PNVGKSALIN++ H IA S QE K+A VGPLPGV
Sbjct: 119 LLREKLAKEPTLLLMIVGIPNVGKSALINTLFRHAHAIAKSE---QEHLKKAKVGPLPGV 175
Query: 181 TQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAV 240
TQ I+GFKI +PS+YVLDTPGVLVP+I +I+TGLKLAL+G++KDSVVGEER+A+YLL+V
Sbjct: 176 TQHISGFKIGEKPSVYVLDTPGVLVPNIDNIDTGLKLALTGAVKDSVVGEERVARYLLSV 235
Query: 241 LNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
LN R + L W E+SQ+E + ++ V+
Sbjct: 236 LNARSSHLRW-----TPELSQAECDT-------------------------SEIGANVRN 265
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHK-ASEARLMVSKKFLTLFRTGK 359
+ + +FDGN+ED++D+ESL+++Q ++R K+P + + + VSK+ L LFRTG+
Sbjct: 266 VIAQTCLKFDGNLEDKDDMESLVDEQMITIRRIFKVPSEVGDDGWIRVSKQLLKLFRTGR 325
Query: 360 LGPFILDDVP 369
LG F LD VP
Sbjct: 326 LGRFTLDPVP 335
>gi|414871399|tpg|DAA49956.1| TPA: hypothetical protein ZEAMMB73_838371 [Zea mays]
Length = 237
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 167/220 (75%), Gaps = 9/220 (4%)
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKSALINSIH+IA SRFP ++K KRATVGPLPGVTQDIAG+KIA +PSIYVL
Sbjct: 1 MLVGVPNVGKSALINSIHRIATSRFPAKDKNKRATVGPLPGVTQDIAGYKIATQPSIYVL 60
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTE 258
DTPGVLVPSIPD+ETGLKLAL+G++KDSVVGEERIA+YLL++ N + TPLHW L +R E
Sbjct: 61 DTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLFNIKKTPLHWERLLHRKE 120
Query: 259 VSQSE--TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDE 316
E + NK + +L RR N SD Y++DLVT VQRAL + F GN+E+E
Sbjct: 121 EWCEEICSSNKKDNSL------RRTRLNNSDAVYVQDLVTEVQRALCRTFLNFTGNIEEE 174
Query: 317 NDLESLIEQQFEVLQRALKIPHKA-SEARLMVSKKFLTLF 355
++LE+LI+ Q L++ +IPHK E + SKK LTLF
Sbjct: 175 SELETLIDMQLVELRKVFRIPHKPFDETQGPTSKKLLTLF 214
>gi|302794602|ref|XP_002979065.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
gi|302819739|ref|XP_002991539.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300140741|gb|EFJ07461.1| hypothetical protein SELMODRAFT_269818 [Selaginella moellendorffii]
gi|300153383|gb|EFJ20022.1| hypothetical protein SELMODRAFT_177376 [Selaginella moellendorffii]
Length = 348
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 221/365 (60%), Gaps = 34/365 (9%)
Query: 19 TKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIA 78
T G + W+PGHM A R I+ R K DLV+E+RD+RIPLSSA+ L +S K+ VI
Sbjct: 5 TAGNAKVCWYPGHMVKAMRDIQQRFKYVDLVLEIRDARIPLSSANDELGEFISKKKHVIV 64
Query: 79 LNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLV 138
+NK DLA+ N+++ W ++F++ Q I +NAHS+ SV ++ ++ +L I +E TLLV
Sbjct: 65 MNKMDLASSNMIHNWKKYFEAQGQVPIYVNAHSKHSVHSMVVDIKERLAGAIQKEATLLV 124
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+ G+PNVGKS L N+++Q VQ + K+A VGPLPGVT+ I+GFKI PSIY+L
Sbjct: 125 MIAGIPNVGKSVLTNALYQAT-----VQGRPKKAQVGPLPGVTKIISGFKIGQCPSIYLL 179
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN-NRT 257
DTPGVL+P+I +ETGLKLA++G++KDSV+GE+R+A+YLLA+LN R P+ + L N
Sbjct: 180 DTPGVLIPNIKSVETGLKLAITGAVKDSVIGEDRLARYLLALLNIR-RPVFAKKLKPNAR 238
Query: 258 EVSQSETENKHEYNL----------KDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLS 307
+ E K + K P+ R V+ A+ +
Sbjct: 239 DYGHWEVVMKRAFGFGRTLMLVMMQKGCSPQER----------------AVREAITSLMI 282
Query: 308 EFDGNVEDENDLESLIEQQFEVLQRALKIPHK-ASEARLMVSKKFLTLFRTGKLGPFILD 366
FDG++EDE+ + LI+ Q L++ ++P E V+++ L +R GKLG ++ D
Sbjct: 283 NFDGDLEDEDAMTELIDNQMYELRKTFRVPQSDGYEGYNKVARRLLQFYRGGKLGSYVWD 342
Query: 367 DVPDA 371
+P+
Sbjct: 343 ILPEG 347
>gi|19225001|gb|AAL86477.1|AC077693_16 putative GTPase domain containing protein [Oryza sativa Japonica
Group]
gi|31433619|gb|AAP55111.1| expressed protein [Oryza sativa Japonica Group]
gi|125533031|gb|EAY79596.1| hypothetical protein OsI_34736 [Oryza sativa Indica Group]
gi|125575767|gb|EAZ17051.1| hypothetical protein OsJ_32544 [Oryza sativa Japonica Group]
Length = 370
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 220/356 (61%), Gaps = 27/356 (7%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKKDL 84
W+ HMAAA RAI+ RL + DLV+EVRD+R+P +SA L+ + +RR++ LNK DL
Sbjct: 23 WYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADL 82
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI--SREPTLLVMVVG 142
A+P+ KW+ + +A+N+HSR +++LL V K++E+ + T V++VG
Sbjct: 83 ADPSQTEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDCTGTVLLVG 142
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKSA++N++H+I + K K A V PG T+DI+G+K+A P+IYVLDTPG
Sbjct: 143 IPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYVLDTPG 202
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV--- 259
VL P + E+G LAL+G+IKDS++ E IAQ+LLA+LN+R T W ++N ++
Sbjct: 203 VLSPVFFNDESGPLLALTGAIKDSMMQEFEIAQFLLAILNSRETYKKWENMNQAGDMPSF 262
Query: 260 ----SQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
S S NK +Y ASD T + +V V++ L S+S F G +E+
Sbjct: 263 SHAMSSSSHHNKRQY--------------ASDHTQ-DFVVKAVRQVLFDSISSFKGYLEN 307
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPD 370
EN+L+SLIE QF LQ A ++ SE R +V+ K L L+RTG+LG + LD PD
Sbjct: 308 ENELKSLIECQFIALQEAFRVSADLSEDVRKLVAMKLLNLYRTGRLGRYTLDCAPD 363
>gi|225454936|ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera]
gi|297744953|emb|CBI38545.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 216/352 (61%), Gaps = 16/352 (4%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WF HMAAA+RA+ R+ + DLV+EVRD+RIPLSS + L+ S+ +R+I LNK DLAN
Sbjct: 21 WFSPHMAAASRAVSERIPLVDLVLEVRDARIPLSSEYDQLRNFPSSSKRIIVLNKMDLAN 80
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK---EVISREPTLLVMVVGV 143
+ +W+R+F+ +N+H++ ++++ L+ ++ ++K ++ T +M+VG+
Sbjct: 81 RLEIKEWMRYFEQQNCISFGVNSHNKDNIKECLKFLQAQVKGVKKIDHSSYTATIMLVGI 140
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKSAL NS+HQI + K K ATV P+PG T+DI+ KI P++YVLDTPG+
Sbjct: 141 PNVGKSALANSLHQIGRISAAEKGKLKHATVSPIPGETRDISSLKIGSHPNVYVLDTPGI 200
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE 263
L P I D+ KLAL+G+IKD +VGE+ +AQY L++LN W L+ E ++
Sbjct: 201 LPPDILDVVVCSKLALTGAIKDCLVGEKELAQYFLSILNRSDEYKKWEKLS--AEENEIS 258
Query: 264 TENKHEYNLK----DLRPKRRKPPNASDVTYIEDLVT-GVQRALHVSLSEFDGNVEDEND 318
T ++ L D R KR+ P + + +D V V+R L ++S F G++E E D
Sbjct: 259 TIDQRVGCLGSSELDSRQKRQYPTD-----HTQDFVVREVRRVLFETISSFPGSLEKEKD 313
Query: 319 LESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVP 369
L LIE QF L+ A ++ ++ E V+ K L L+RTG+LG + LD VP
Sbjct: 314 LSRLIETQFTALREAFRVASESGEDVENKVAAKLLNLYRTGRLGHYTLDSVP 365
>gi|449450556|ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
Length = 366
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 210/353 (59%), Gaps = 20/353 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+ HM AA+RA+ R+ + D V+EVRD+RIP SS + ++ + +R+I LNK DLA+
Sbjct: 27 WYDAHMEAASRAVAERIPLVDFVLEVRDARIPTSSEYEMMKNHPPSSKRIIVLNKTDLAD 86
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI----SREPTLLVMVVG 142
+ W RHF+ +N+H++ ++++ L ++ +++E+ S T + M+VG
Sbjct: 87 QSQTEVWTRHFEDHNCISYGVNSHNKENIREFLNFLQARVRELKKSGHSSHATTM-MLVG 145
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKSAL NS+HQI + K K A V PG T++I+ KIA P+IYVLDTPG
Sbjct: 146 IPNVGKSALANSLHQIGRISAAEKGKLKHAVVSSQPGETKNISSLKIASHPNIYVLDTPG 205
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQS 262
+ P I DIE KLAL+G+I+D +VGE I QYLL ++N+ W +L S
Sbjct: 206 IFPPKIDDIEVCSKLALTGAIRDILVGEHVIVQYLLTIVNSSVKYKKWANL------SAI 259
Query: 263 ETENKHEYNLKDLRPKRRKPPNAS-DVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLES 321
E NL+ + +RR P + + D+T V V+RAL + S FDGN+EDE ++ S
Sbjct: 260 SLECSTPSNLE--KQRRRYPSDHTQDIT-----VNEVRRALFETRSSFDGNLEDEKEMGS 312
Query: 322 LIEQQFEVLQRALKIPHK-ASEARLMVSKKFLTLFRTGKLGPFILDDVPDANS 373
LIE Q L +AL +P + A + V+ K L L+RTG+LG + LD +P N+
Sbjct: 313 LIETQLHTLHKALHVPMDFCNNATIKVAAKLLNLYRTGRLGRYTLDSLPLVNT 365
>gi|297610975|ref|NP_001065460.2| Os10g0572000 [Oryza sativa Japonica Group]
gi|255679658|dbj|BAF27297.2| Os10g0572000 [Oryza sativa Japonica Group]
Length = 348
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 217/356 (60%), Gaps = 32/356 (8%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKKDLANPNI 89
MAAA RAI+ RL + DLV+EVRD+R+P +SA L+ + +RR++ LNK DLA+P+
Sbjct: 1 MAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQ 60
Query: 90 LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI--SREPTLLVMVVGVPNVG 147
KW+ + +A+N+HSR +++LL V K++E+ + T V++VG+PNVG
Sbjct: 61 TEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDCTGTVLLVGIPNVG 120
Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207
KSA++N++H+I + K K A V PG T+DI+G+K+A P+IYVLDTPGVL P
Sbjct: 121 KSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYVLDTPGVLSPV 180
Query: 208 IPDIETGLKLALSGS-----IKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV--- 259
+ E+G LAL+G+ IKDS++ E IAQ+LLA+LN+R T W ++N ++
Sbjct: 181 FFNDESGPLLALTGTSYNGAIKDSMMQEFEIAQFLLAILNSRETYKKWENMNQAGDMPSF 240
Query: 260 ----SQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
S S NK +Y ASD T + +V V++ L S+S F G +E+
Sbjct: 241 SHAMSSSSHHNKRQY--------------ASDHTQ-DFVVKAVRQVLFDSISSFKGYLEN 285
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPD 370
EN+L+SLIE QF LQ A ++ SE R +V+ K L L+RTG+LG + LD PD
Sbjct: 286 ENELKSLIECQFIALQEAFRVSADLSEDVRKLVAMKLLNLYRTGRLGRYTLDCAPD 341
>gi|297813513|ref|XP_002874640.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320477|gb|EFH50899.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 373
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 213/353 (60%), Gaps = 14/353 (3%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNK 81
N W+ HMAAA RAI R+ + D V+E+RD+RIPLSS + L+ + S +R+I LNK
Sbjct: 25 NRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSDYELLR-KFSPFPSQRIIVLNK 83
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS---REPTLLV 138
+LA P L K + +F+ K A+N+H++ V++ L ++ +++E+ T +
Sbjct: 84 MELAEPLELKKCIDYFEERKYLSYAVNSHNKECVKQFLNFLQSQVRELHKAGYSGHTTTM 143
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M++G+PN+GKSAL NS+HQI + K K TV PG T+DI KI P++YVL
Sbjct: 144 MLLGIPNIGKSALANSLHQIGRISAAEKGKLKHTTVSSQPGDTKDIMSLKIGSHPNVYVL 203
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTE 258
DTPG+ P++ D E KLAL+G+I D +VGE ++A+ L +LN+ W L +
Sbjct: 204 DTPGIFPPTLNDAEICSKLALTGAIPDDIVGEIKLARLFLTILNSSYEYKKWAKLCKSQD 263
Query: 259 VSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEND 318
+++S ++ E + D + KR+ P + + + +V V+R L+ ++S FDGN+ED+
Sbjct: 264 LTESLSD---ESSKSDGKRKRQYPTDHTQ----DFIVYDVRRVLYQTISAFDGNLEDDIS 316
Query: 319 LESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPD 370
+ +LIE QF L+ L +P +ASE L V+ K L L+RTG+LG + L+ V D
Sbjct: 317 MGNLIETQFAALRTVLMVPEEASEFTDLRVASKILNLYRTGRLGHYTLEHVSD 369
>gi|240255778|ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana]
gi|3600035|gb|AAC35523.1| contains similarity to GTP-binding proteins [Arabidopsis thaliana]
gi|332657513|gb|AEE82913.1| GTP binding protein [Arabidopsis thaliana]
Length = 377
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 215/351 (61%), Gaps = 14/351 (3%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNK 81
N W+ HMAAA RAI R+ + D V+E+RD+RIPLSS + L+ + S +R+I LNK
Sbjct: 25 NRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLR-KFSPLPSKRIIVLNK 83
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS---REPTLLV 138
+LA+P L K + +F+ A+N+H++ V++LL ++ +++E+ T +
Sbjct: 84 MELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTTTM 143
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M++G+PNVGKSAL NS+H I + K K TV PG T+DI KI P++YVL
Sbjct: 144 MLLGIPNVGKSALSNSLHHIGRISAAEKGKLKHTTVSSQPGDTKDIMSLKIGSHPNVYVL 203
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTE 258
DTPG+ P++ D E KLAL+G+I D +VGE ++A+ L +LN+ W L +
Sbjct: 204 DTPGIFPPNLYDAEICAKLALTGAIPDDIVGELKLARLFLTILNSSHEYKKWAKLCKSQD 263
Query: 259 VSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEND 318
+++S ++ E + D + KR+ A+D T + +V V+R L+ ++S FDGN+EDE
Sbjct: 264 LTESLSD---ESSKSDAKHKRQY---ATDHTQ-DFIVYDVRRVLYETISAFDGNLEDEIS 316
Query: 319 LESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDV 368
+ +LIE QF L+ L++P +ASE A L V+ K L L+RTG+LG + L+ V
Sbjct: 317 MGNLIETQFAALRSVLRVPEEASEFADLRVASKILNLYRTGRLGHYTLEHV 367
>gi|294460979|gb|ADE76060.1| unknown [Picea sitchensis]
Length = 232
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/237 (55%), Positives = 160/237 (67%), Gaps = 20/237 (8%)
Query: 151 LINSIHQIALSRFPV---QEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207
L N + I RF V QEK KRATVGPLPGVTQDIAGFKIAH+PSIYVLDTPGVLVP+
Sbjct: 2 LENLLSLILCIRFLVCVLQEKLKRATVGPLPGVTQDIAGFKIAHQPSIYVLDTPGVLVPN 61
Query: 208 IPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENK 267
IPDI+TGLKLAL+G++KDSVVGE+R+AQYLLA+LNTR PL W+ LNN + E
Sbjct: 62 IPDIDTGLKLALTGAVKDSVVGEDRLAQYLLAMLNTRHVPLRWKGLNNES------CEES 115
Query: 268 HEYNLKDL---------RPKRRKPPNASDVTYI-EDLVTGVQRALHVSLSEFDGNVEDEN 317
+ L+DL K +K + + ED V VQ+AL + S F G++E+E+
Sbjct: 116 SNFCLEDLTVKGPNDSPTEKNKKIKETKQILHQKEDHVLEVQKALFRTFSAFKGDLENED 175
Query: 318 DLESLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPDANS 373
DLE LIE QF+VLQ+ +IP + E R VSKK L LFR GKLG +ILD +P S
Sbjct: 176 DLEDLIESQFDVLQKTFRIPLNSGEVGRNKVSKKLLQLFRIGKLGHYILDSLPKGAS 232
>gi|255570795|ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis]
gi|223534309|gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]
Length = 373
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 202/355 (56%), Gaps = 21/355 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+ HMAAA+ AI R+ + D VIEVRD+RIPLSS L + RR+I +NK DLAN
Sbjct: 21 WYNPHMAAASSAIAERISLVDFVIEVRDARIPLSSECQLLTNHSDSSRRIIVMNKMDLAN 80
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK---LKEVISREPTLLVMVVGV 143
L W+++F AIN+H++ +V++ L ++ + LK + T+ +M+VG+
Sbjct: 81 RLQLKDWIKYFKQRGFVSYAINSHNKDNVKEFLNFLQGQVRGLKNIDHSGCTITMMMVGI 140
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK-------IAHRPSIY 196
PNVGKSAL S+H I + K K A V P PG T+DI+ K I P+IY
Sbjct: 141 PNVGKSALAKSLHHIGRISAAEKGKLKHAKVTPHPGETKDISSLKACSLSLIIGSHPNIY 200
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
VLDTPGVL P I D E KLAL+G+ +D ++GE +AQY LA+LN W L+ R
Sbjct: 201 VLDTPGVLPPQIFDAEVCFKLALTGTFRDGLIGERELAQYFLAILNLSDEYKKWAKLSAR 260
Query: 257 TEVSQSETENKHEYNLKDLRPKRR----KPPNASDVTYIEDLVTGVQRALHVSLSEFDGN 312
E +S T+NK E LR K+ K + +D T + +V +R L ++S FDG+
Sbjct: 261 -EKEKSFTDNKAEC----LRDKQLDTEGKKEHLTDHTQ-DFIVHCARRKLFETVSSFDGD 314
Query: 313 VEDENDLESLIEQQFEVLQRALKIPHK-ASEARLMVSKKFLTLFRTGKLGPFILD 366
V++E DL+ LIE Q L +P +A V+ K L L+RTG+LG + LD
Sbjct: 315 VQNEVDLQKLIELQVAALTETFHLPLDLEDDACSKVATKLLNLYRTGRLGHYTLD 369
>gi|357141159|ref|XP_003572110.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium
distachyon]
Length = 373
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 212/351 (60%), Gaps = 16/351 (4%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL----QPQLSAKRRVIALNKK 82
W+ HMAAA RAI+ RL + DLV+EVRD+RIP +SA L Q L RR++ALNK
Sbjct: 25 WYGRHMAAADRAIRARLPLVDLVLEVRDARIPATSAFEPLRRRSQEDLDG-RRIVALNKA 83
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI--SREPTLLVMV 140
DLA+P+ KWV +AIN+HSR S+++LL +V K++E+ + T V++
Sbjct: 84 DLADPSETQKWVAFMKQRGCSSVAINSHSRESIKELLNVVRSKIREIKLGENDCTGTVLL 143
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKSA+IN++HQI + K K A V PG T+DI+G+K+A P+IYVLDT
Sbjct: 144 VGIPNVGKSAIINAMHQIGRIGAAEKGKLKHAIVSSHPGETRDISGYKVASHPNIYVLDT 203
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVS 260
PG+L + E G +LAL+G+IKDS++ E IA++LLA+LN R W +LN + S
Sbjct: 204 PGILCRTFASDECGPRLALTGAIKDSLLEEHDIAKFLLALLNLRKEYRDWDNLNRMGDKS 263
Query: 261 QSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLE 320
R + K +SD T + +V V++ L + F G++ +EN+L
Sbjct: 264 CLADGTSG-------RSQHTKRQYSSDHTQ-DFIVKAVRQVLFETTVSFQGDLGNENELR 315
Query: 321 SLIEQQFEVLQRALKIPHKASE-ARLMVSKKFLTLFRTGKLGPFILDDVPD 370
L++ QF LQ A ++ ++SE V+ K L L+RTG+LG + LD VP+
Sbjct: 316 RLVDSQFTSLQNAFRLSAESSEDMNKRVAIKLLNLYRTGRLGHYTLDHVPE 366
>gi|356528601|ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]
Length = 399
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 209/348 (60%), Gaps = 17/348 (4%)
Query: 33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNK 92
AAA+RAI R+ ++DLV++VRD+RIPLSS L+ + ++++ALNK DL + +
Sbjct: 54 AAASRAIAERIPLADLVVQVRDARIPLSSECEILRNYPPSLKQIVALNKMDLVGTSNVKA 113
Query: 93 WVRHFDSCKQDYIAINAHSRSSVQKLLELV-----ELKLKEVISREPTLLVMVVGVPNVG 147
W+ +F +NAH++ ++++LL L+ ELK + T VM+VG+PNVG
Sbjct: 114 WMGYFRERNCISCGVNAHNKENIKQLLSLIQRRVSELKGADQCDNNYTATVMLVGIPNVG 173
Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207
KSAL+N++HQ+ + K K ATV P PG T+DI FKI P+IYVLDTP +L P
Sbjct: 174 KSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTPAILSPK 233
Query: 208 IPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL----NNRTEVSQSE 263
+P+++ KL L+G+I D +V + +AQ+ LA+ N+ W L N+R ++ +
Sbjct: 234 VPNVDILSKLILTGAIGDCLVRRKEVAQHFLAIHNSSEQYKKWAKLSMKDNDRLFLNGT- 292
Query: 264 TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLI 323
TE L ++ K + P + + ++D V+R L ++S F+G+V E+++E+LI
Sbjct: 293 TEQLTSSGLH-MKHKNQIPTDHTQDCVVQD----VRRTLFETISSFEGDVRCEDEMEALI 347
Query: 324 EQQFEVLQRALKIPHKASE--ARLMVSKKFLTLFRTGKLGPFILDDVP 369
+QF LQ A + ++ E A V+ K L LFRTG+LG +ILD++P
Sbjct: 348 ARQFTALQEAFHVSIESEEDDAHDKVAGKLLNLFRTGRLGHYILDNLP 395
>gi|194698884|gb|ACF83526.1| unknown [Zea mays]
Length = 379
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 209/353 (59%), Gaps = 18/353 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL----QPQLSAKRRVIALNKK 82
W+ HMA+A RAI+ RL + DLV+EVRD+R P SS+ L P +R V+ LNK
Sbjct: 24 WYGRHMASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRRGPLEPDRRAVVLLNKA 83
Query: 83 DLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKEVISREP--TLLVM 139
DLA+P+ WV + ++ +A+N+HSR S++++L++V+ +++E+ + T +
Sbjct: 84 DLADPSETEGWVAYIKKQRRCSCVAVNSHSRESIKEVLKVVQARMREIKHGDSNCTGTAL 143
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
+VG+PNVGKSA++N+IHQI + K K A V PG T+DI G+KIA P+IYVLD
Sbjct: 144 LVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGETRDIRGYKIASHPNIYVLD 203
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTE- 258
TPGVL P D +G +LAL+G+IKDS++ + AQ LLA++N+ W LN +
Sbjct: 204 TPGVLSPRFADDGSGPRLALTGAIKDSLLEDYDTAQLLLAIVNSGKEYRKWEKLNKAGDS 263
Query: 259 VSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEND 318
S T +N K+ ASD T + +V V++ L ++S F+G++ ++
Sbjct: 264 FSCGNTITPRGHNSKE--------QYASDHTQ-DSVVKAVRQVLFETISSFNGDLGQVDE 314
Query: 319 LESLIEQQFEVLQRALKIPHKASEARLM-VSKKFLTLFRTGKLGPFILDDVPD 370
L LI Q LQ+ K+ + SE ++ K + L+RTG+LG + L+ VPD
Sbjct: 315 LRRLIGHQLVNLQQVFKVLTEPSENICKPIATKLVNLYRTGRLGRYTLEHVPD 367
>gi|242040123|ref|XP_002467456.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
gi|241921310|gb|EER94454.1| hypothetical protein SORBIDRAFT_01g028440 [Sorghum bicolor]
Length = 374
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 213/356 (59%), Gaps = 24/356 (6%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQ----PQLSAKRRVIALNKK 82
W+ HMAAA RAI+ RL + DLV+EVRD+R+P SS+ L+ P +RRV+ LNK
Sbjct: 24 WYGRHMAAAERAIRARLPLVDLVLEVRDARVPASSSFEPLRRRRGPLEPDRRRVVLLNKA 83
Query: 83 DLANPNILNKWVRHFD---SCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE--PTLL 137
DLA+P+ +WV + SC +A+N+HSR S+++LL V+ ++KE+ + E T
Sbjct: 84 DLADPSETEEWVAYIKKQTSCP--CVAVNSHSRESIKELLNAVQTRIKEIKNGENNCTAT 141
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKSA++N++HQI + K K A V PG T+DI+G+K+A P+IYV
Sbjct: 142 ALLVGIPNVGKSAIVNAMHQIGRIAAAEKGKLKHAIVSSHPGETRDISGYKVASHPNIYV 201
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPGVL P + +G +LAL+G+IKDS++ E I Q+LLA++N+ W LN
Sbjct: 202 LDTPGVLSPRFANDGSGPRLALTGAIKDSLLEEYDIVQFLLAIVNSGKEYRKWEKLNKAG 261
Query: 258 EV-SQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR-ALHVSLSEFDGNVED 315
+ S +T +N + ASD + +D V V R L ++S F+G++
Sbjct: 262 DTFSCGKTITSRGHN--------NEGQYASD--HTQDFVVKVVRQVLFETVSCFNGDLGQ 311
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLM-VSKKFLTLFRTGKLGPFILDDVPD 370
++L LI Q LQ K+ ++SE ++ K L L+RTG+LG + L+ VPD
Sbjct: 312 VDELRRLIGHQLVNLQEVFKVSTESSEDMCKPIAMKLLNLYRTGRLGHYTLEHVPD 367
>gi|224121730|ref|XP_002318658.1| predicted protein [Populus trichocarpa]
gi|222859331|gb|EEE96878.1| predicted protein [Populus trichocarpa]
Length = 338
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 47/370 (12%)
Query: 9 KGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP 68
+ +GL E+G W+ HMAAA+ AI R+ ++D ++EVRD+RIPLSS H L
Sbjct: 6 RSIGLKEIGEALKKAKSGWYSLHMAAASHAIAQRIPLADFILEVRDARIPLSS-HCQLLS 64
Query: 69 QL--SAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK- 125
S+ RR+I +NK DLAN + L +W ++F+ +N+H++ V+K L ++ +
Sbjct: 65 NFPPSSLRRIIVMNKTDLANRSQLKEWTKYFEQQNCISYGVNSHNKEDVKKFLNFLQAQV 124
Query: 126 --LKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
LK + T +M++G+PNVGKSAL NS+HQ+ + K K V P PG T++
Sbjct: 125 RELKRIDHSGHTTTMMIIGIPNVGKSALANSLHQLGRISAAEKGKLKHTIVSPHPGETKN 184
Query: 184 IAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
I+ K+ +++VGE+ +A+Y LA+LNT
Sbjct: 185 ISSLKV--------------------------------RAIENLVGEKELARYFLAILNT 212
Query: 244 RGTPLHWRHLN---NRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR 300
W L+ N + E E + L +++ KR+ P + + + +V V+R
Sbjct: 213 SDGYKKWERLSTHGNDKSFTGQEVEGSSDSKL-NMKRKRQYPSDHTQ----DFMVNRVRR 267
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIP-HKASEARLMVSKKFLTLFRTGK 359
L S+S DGN+++E DLE LIE QF L+ A + ++++ +S K L L+RTG+
Sbjct: 268 TLLESISCLDGNIKNEKDLEELIEVQFTALREAFLVSLEPCNDSQTKISAKLLNLYRTGR 327
Query: 360 LGPFILDDVP 369
LG + LD +P
Sbjct: 328 LGHYTLDPLP 337
>gi|348686384|gb|EGZ26199.1| hypothetical protein PHYSODRAFT_297549 [Phytophthora sojae]
Length = 319
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 142/230 (61%), Gaps = 16/230 (6%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS-AKRRVIALNKKD 83
+NWFPGHMA A RA+ ++ D++IEVRD+RIP SSA+P L+ +K R++ NK D
Sbjct: 14 VNWFPGHMALARRAMVSQMDAVDVLIEVRDARIPWSSANPVLEEAFGKSKPRLVVFNKSD 73
Query: 84 LANPNILNKWVRHFDSCKQ------DYIAINAHSRSSVQKLLELVELKLKEVISREPTLL 137
LAN N+ R CKQ D + + +Q +L+ +
Sbjct: 74 LANSNMQQ---RVEQQCKQQLGTATDCLFTSVTKGKRLQAILQWCNKHSGAQFKSTAGSM 130
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT--QDIAGFK---IAHR 192
VMVVG+PNVGKS+LIN +++ ++ + + KRATVGP PGVT DI + + +
Sbjct: 131 VMVVGIPNVGKSSLINEFRRLSNNQ-KMAKGRKRATVGPTPGVTVRNDIIKVRSGVVNDK 189
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
P++YV+DTPGV++P+IP ETG++LAL+G+IKD VVG E IA Y+L +LN
Sbjct: 190 PAVYVVDTPGVMLPNIPSAETGMRLALTGAIKDEVVGTELIADYMLFLLN 239
>gi|301112340|ref|XP_002905249.1| GTPase, putative [Phytophthora infestans T30-4]
gi|262095579|gb|EEY53631.1| GTPase, putative [Phytophthora infestans T30-4]
Length = 314
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 138/225 (61%), Gaps = 11/225 (4%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS-AKRRVIALNKKD 83
+NWFPGHMA A R + ++ D++IEVRD+RIP SSA+P L+ +K R++ NK D
Sbjct: 14 VNWFPGHMALARRQMVAQMDAVDVLIEVRDARIPWSSANPVLEEAFGKSKPRLVVFNKSD 73
Query: 84 LANPNILNKWVRHFDSCKQ------DYIAINAHSRSSVQKLLELVELKLKEVISREPTLL 137
LAN N+ + + CK D + + +Q +L+ + +
Sbjct: 74 LANSNMQQRVEKQ---CKNQLGEATDCLFTSVTKGKRLQAILQWCNKHSQAQFKSTAGSM 130
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS+LIN +++ S + + RATVGP PGVT K+ +P++YV
Sbjct: 131 VMVVGIPNVGKSSLINEFRRLSNSG-KLAKGRSRATVGPTPGVTVRNDIIKVNDKPAVYV 189
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+DTPGV++P+IP ETG++LAL+G+IKD VVG E IA Y+L +LN
Sbjct: 190 VDTPGVMLPNIPSSETGMRLALTGAIKDDVVGTELIADYMLFLLN 234
>gi|325180121|emb|CCA14523.1| GTPase putative [Albugo laibachii Nc14]
Length = 306
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 140/229 (61%), Gaps = 13/229 (5%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS-AKRRVIALNKKD 83
INWFPGHMAAA + ++ +L D++IEVRD+RIP +SA+P L + +K R++ NK D
Sbjct: 11 INWFPGHMAAAKKQMQAQLDSVDVLIEVRDARIPFTSANPILDTAFNHSKPRLVVFNKCD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSS----------VQKLLELVELKLKEVISRE 133
LAN N+ F + I N+ R+ V +L+ + +
Sbjct: 71 LANSNMRRLVETQFMQDGERTIE-NSFPRACMFTSVLKGKKVNSILQWCDENTRAQFKNT 129
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+VMV+G+PNVGKS+LIN+ ++ S + + KRA VGP PGVT ++ P
Sbjct: 130 AGTMVMVLGIPNVGKSSLINAFRSLS-SSAKLAKGKKRALVGPTPGVTIRKDIIQVNATP 188
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+IYV+DTPGV++P++ + ETGLKLAL+G+I+D +VG+E +A Y+L +LN
Sbjct: 189 AIYVVDTPGVMLPNVENQETGLKLALTGAIRDDIVGKEVLADYMLFLLN 237
>gi|440797040|gb|ELR18135.1| GTPase of unknown function subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 313
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 15/232 (6%)
Query: 23 GNINWFPGHMAAATRAIKHRLKIS--DLVIEVRDSRIPLSSAHPGLQPQLSAKR--RVIA 78
G +NWFPGHMA ATR ++ RL D+V+EVRD+RIP S+A+ L+ L+ + R++
Sbjct: 17 GAVNWFPGHMAKATRLMRERLNSGGVDVVLEVRDARIPFSAANSTLEGVLAQRHIPRILI 76
Query: 79 LNKKDLANPNIL-NKWVRHFDSCKQDYIAIN-AHSRSSVQKLLELVELKLKEVISREPT- 135
L+K DL N N+L Q I H + Q+LL P
Sbjct: 77 LHKADLTNHNLLPAPGAGKAGKAIQSLIPTALEHYKQHRQRLLGEGADDPSTSCPGYPDK 136
Query: 136 -LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKR----ATVGPLPGVTQDIAGFKIA 190
L +M++G+PNVGKS +INS+ Q LS +K KR A GPLPGVT+D+ GFK++
Sbjct: 137 PLTLMIMGLPNVGKSTIINSLRQHCLSD---SDKKKRGSQFAKTGPLPGVTRDLTGFKVS 193
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+P Y++DTPGV++P++ + + GL+LAL+G++K+S+VG++ IA YLL LN
Sbjct: 194 SKPLAYLVDTPGVMIPNVENADVGLRLALTGAVKESIVGKQAIADYLLYSLN 245
>gi|20073169|gb|AAH27306.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Mus musculus]
Length = 327
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 170/351 (48%), Gaps = 71/351 (20%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK D VIEV D+RIP S +P Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K V+ F +C +D + + V K++EL+ + + P
Sbjct: 89 LTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MVVGVPNVGKS+LINS+ + L K A VG PG+T+ + ++ RP +
Sbjct: 144 CIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLV 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN G + +H
Sbjct: 198 FLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYAL 257
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
+ Q E+ LK++ K RK T ++TG GNV
Sbjct: 258 ASACDQI------EWVLKNVAIKLRK-------TRKVKVLTGT------------GNV-- 290
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
V+Q P A M ++ FL FR+G LG +LD
Sbjct: 291 ------------NVIQ-----PDYA-----MAARDFLRTFRSGLLGQMMLD 319
>gi|327281444|ref|XP_003225458.1| PREDICTED: mitochondrial GTPase 1-like [Anolis carolinensis]
Length = 319
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 140/249 (56%), Gaps = 22/249 (8%)
Query: 7 IKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL 66
+ +GLG E +G WFPGHMA + +K RL+ D ++EV D+RIP S +P L
Sbjct: 6 VLRGLGWRERFDCRGLEVARWFPGHMAKGLKDMKSRLRAVDCILEVHDARIPFSGRNPLL 65
Query: 67 QPQLSAKRRVIALNKKDLAN----PNILNKW----VRH--FDSCKQDYIAINAHSRSSVQ 116
Q L + ++ LNK DLA+ P +L + RH F C +D + V
Sbjct: 66 QEALGIRPHLLVLNKMDLADLTHKPQVLKRLEQQGFRHVVFTDCLKD-----ENVMKIVP 120
Query: 117 KLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP 176
+ EL+ + S +MV+GVPNVGKS++INS+ + L +K K + VG
Sbjct: 121 VVTELISNNQRYQRSENVESCIMVIGVPNVGKSSVINSVRRRHL------KKGKASLVGG 174
Query: 177 LPGVTQDI-AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQ 235
PGVT+ + ++ RP I++LDTPGVL P I IETGLKLAL G+IKD +VGEE IA
Sbjct: 175 APGVTRAVLTKIQVCERPLIFLLDTPGVLSPQIECIETGLKLALCGAIKDHLVGEEIIAD 234
Query: 236 YLLAVLNTR 244
YLL LN +
Sbjct: 235 YLLYALNCQ 243
>gi|74194747|dbj|BAE25976.1| unnamed protein product [Mus musculus]
Length = 326
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 170/351 (48%), Gaps = 71/351 (20%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK D VIEV D+RIP S +P Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K V+ F +C +D + + V K++EL+ + + P
Sbjct: 89 LTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MVVGVPNVGKS+LINS+ + L K A VG PG+T+ + ++ RP +
Sbjct: 144 CIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLV 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN G + +H
Sbjct: 198 FLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYAL 257
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
+ Q E+ LK++ K RK T ++TG GNV
Sbjct: 258 ASACDQI------EWVLKNVAIKLRK-------TRKVKVLTGT------------GNV-- 290
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
V+Q P A M ++ FL FR+G LG +LD
Sbjct: 291 ------------NVIQ-----PDYA-----MAARDFLRTFRSGLLGQVLLD 319
>gi|392338002|ref|XP_003753415.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
gi|392344722|ref|XP_003749050.1| PREDICTED: mitochondrial GTPase 1-like [Rattus norvegicus]
Length = 326
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 130/230 (56%), Gaps = 22/230 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D VIEV D+RIP S +P Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K V+H F +C +D + + + K+ EL+ + + P
Sbjct: 89 LTEQQKIVQHLEEKGLRNVIFTNCIKD-----ENIKQIIPKVTELIGCSYRYHRAENPEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MVVGVPNVGKS+LINS+ + L K A VG PG+T+ + ++ RP +
Sbjct: 144 CIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLM 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN G
Sbjct: 198 FLLDTPGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247
>gi|188528646|ref|NP_955005.2| mitochondrial GTPase 1 [Mus musculus]
gi|134034175|sp|Q8R2R6.2|MTG1_MOUSE RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
gi|74190443|dbj|BAE25897.1| unnamed protein product [Mus musculus]
Length = 326
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 170/351 (48%), Gaps = 71/351 (20%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK D VIEV D+RIP S +P Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K V+ F +C +D + + V K++EL+ + + P
Sbjct: 89 LTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MVVGVPNVGKS+LINS+ + L K A VG PG+T+ + ++ RP +
Sbjct: 144 CIMVVGVPNVGKSSLINSLRRQHL------RTGKAARVGGEPGITRAVTSRIQVCERPLV 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN G + +H
Sbjct: 198 FLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHGLFGYVQHYAL 257
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
+ Q E+ LK++ K RK T ++TG GNV
Sbjct: 258 ASACDQI------EWVLKNVAIKLRK-------TRKVKVLTGT------------GNV-- 290
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
V+Q P A M ++ FL FR+G LG +LD
Sbjct: 291 ------------NVIQ-----PDYA-----MAARDFLRTFRSGLLGQVMLD 319
>gi|354505914|ref|XP_003515012.1| PREDICTED: mitochondrial GTPase 1-like [Cricetulus griseus]
Length = 327
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 133/231 (57%), Gaps = 24/231 (10%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D VIEV D+RIPLS + Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPLSGRNSLFQELLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K V+H F +C +D + + + KL+EL++ + +
Sbjct: 89 LTEQQKIVQHLEGKGLKNVIFTNCVKD-----ENIKQIIPKLMELIKYSYRYNRAENMEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAG-FKIAHRPS 194
VMV+GVPNVGKS+LINS+ + L +T +AT VG PG+T+ + ++ RP
Sbjct: 144 CVMVIGVPNVGKSSLINSLRRQHL-------RTGKATRVGGEPGITRAVTSRIQVCERPL 196
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN G
Sbjct: 197 TFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247
>gi|383792146|ref|NP_001244302.1| mitochondrial GTPase 1 homolog [Gallus gallus]
Length = 329
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 137/227 (60%), Gaps = 20/227 (8%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+WFPGHMA R ++ L+ +D ++EV D+RIPLS +P LQ L + ++ LNK DLA
Sbjct: 38 SWFPGHMAKGLRQMRASLRRADCLVEVHDARIPLSGRNPVLQEVLGIRPHLLVLNKMDLA 97
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSR-SSVQKLLELVELKLKEVISREP--------TL 136
+P ++ + Y+ R S+V+K++ LV ++++ P
Sbjct: 98 DPRQQSRVLEQLRQQGCSYVVFTDCQRDSNVKKIVPLVA----KLVNSSPRYHRAESTEY 153
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSI 195
+MV+GVPNVGKS+LINS+ ++ L +K K VG PGVT+ + ++ P +
Sbjct: 154 SIMVIGVPNVGKSSLINSLRRLHL------KKGKATAVGGEPGVTKAVLTRIQVCETPLV 207
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
Y++DTPGVL P + D+ETG+KLAL G+I+D +VGE+ +A YLL VLN
Sbjct: 208 YLVDTPGVLPPKLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLN 254
>gi|399155736|ref|ZP_10755803.1| GTPase YlqF [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 306
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INW+PGHM AT+ + +LK D+V+E+RD+RIP+SSA+ + L K+R++ NK +
Sbjct: 22 DINWYPGHMLKATKELAKQLKRVDVVLEMRDARIPVSSANHDFEKLLQQKKRILLFNKTN 81
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+ + KW +F + ++A ++ ++Q++L L ++E S R P+L
Sbjct: 82 LADEDTTRKWKAYFKKMDTPSLFVDALNKQNLQEILPLSRKLMQEKWSNFRKRGIRPPSL 141
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++ G+PNVGKS+LIN + + K A GP PGVT+ K+ +
Sbjct: 142 KLLITGIPNVGKSSLINRLS-----------RRKAAETGPTPGVTKHQDWIKLGK--DVE 188
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I + E GL+L ++G+IKDS+VG ++ YLL +L
Sbjct: 189 LLDTPGILWPKIENREAGLRLTITGAIKDSIVGTSLLSDYLLGIL 233
>gi|395501203|ref|XP_003754987.1| PREDICTED: mitochondrial GTPase 1 [Sarcophilus harrisii]
Length = 336
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 138/240 (57%), Gaps = 23/240 (9%)
Query: 17 GFTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
GF+ G + WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K
Sbjct: 19 GFSFAGQEVARWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGIKPH 78
Query: 76 VIALNKKDLAN----PNILNKWVRH------FDSCKQDYIAINAHSRSSVQKLLELVELK 125
++ LNK DLA+ IL + + F +C +D + + V + EL+E
Sbjct: 79 LLVLNKMDLADLKEKQKILGRLNKEGVKNVIFTNCLKD-----ENIKQIVPTVTELIESG 133
Query: 126 LKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI- 184
+ +MV+GVPNVGKS+LINS+ + L +K K + VG PG+T+ +
Sbjct: 134 YRYHRGENLEYCIMVIGVPNVGKSSLINSLRRQHL------KKGKASRVGGDPGITRAVM 187
Query: 185 AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ ++ RP +++LDTPGVL P IPD+ETGLKLA G+I D +VGE+ IA YLL LN +
Sbjct: 188 SKIQVCERPLMFLLDTPGVLAPRIPDVETGLKLATCGTILDHLVGEDIIADYLLFSLNKQ 247
>gi|350593186|ref|XP_001927683.3| PREDICTED: mitochondrial GTPase 1 isoform 1 [Sus scrofa]
Length = 332
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 134/237 (56%), Gaps = 23/237 (9%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG ++ WFPGHMA R ++ LK+ D ++EV D+RIPLS +P Q L K +
Sbjct: 20 FPVGGRDVARWFPGHMAKGLRKMQSSLKLVDCILEVHDARIPLSGRNPLFQETLGLKPHL 79
Query: 77 IALNKKDLANPNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKL 126
+ LNK DLA+ K ++H F +C +D + + + K+ ELV
Sbjct: 80 LVLNKMDLADLKEQQKIMQHLEREGLKNVIFTNCVKD-----ENIKQIIPKVTELVGSSC 134
Query: 127 KEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186
+ +MV+GVPNVGKS+LIN++ + L K K VG PG+T+ +
Sbjct: 135 RYHRGESVEYCIMVIGVPNVGKSSLINALRRQHL------RKGKATKVGGEPGITRAVMS 188
Query: 187 -FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++ RP +++LDTPGVL P I ++ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 189 RVQVCERPLMFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLN 245
>gi|452822796|gb|EME29812.1| GTP-binding protein [Galdieria sulphuraria]
Length = 319
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR--RVIALN 80
INWFPGHM A+R IK +L ++D++IEVRD+RIPL+SA QL ++ R+I LN
Sbjct: 10 STINWFPGHMYKASREIKEKLALADIIIEVRDARIPLTSAAVAEVSQLPSRTIPRIILLN 69
Query: 81 KKDLANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQK------LLELVELKLKEVISR 132
K DL+ P +L+K + K Y +I S VQ+ L L + +++ +
Sbjct: 70 KADLSEPLLLSKAMCRLAKGGLKSSYCSILPFSCKQVQRNHISSVLDTLAAVPVRKRLKS 129
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRF---PVQEKTKR---ATVGPLPGVTQDIAG 186
PT V+V+GVPNVGKS+ IN + + +++ PV+ A VG PGVT+++AG
Sbjct: 130 LPTK-VIVIGVPNVGKSSFINLLQRHCRNQWKDIPVEHTIDDGGVAKVGKHPGVTKNVAG 188
Query: 187 FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
F ++H+P IY+LD+PGV+ P + E+G+KL ++G I+D V Q+LL +L R
Sbjct: 189 FVVSHQPYIYMLDSPGVMYPRLDSWESGMKLIITGCIRDQSVDSIAACQFLLNMLIER 246
>gi|403259229|ref|XP_003922123.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 334
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + +++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQNSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLL----ELVELKLKEVISREPTLLVMVV 141
K ++ + ++ + N SVQ+++ EL+E + +MV+
Sbjct: 90 LTEQQKIMQRLEGEGLKNVVFTNCVKDESVQQIIPTVTELIESSHRYHRGENLEYCIMVI 149
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDT 200
GVPNVGKS+LINS+ + L K K VG PG+T+ + +++ RP +++LDT
Sbjct: 150 GVPNVGKSSLINSLRRQHLG------KGKATRVGGQPGITRAVMSRIQVSERPLMFLLDT 203
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
PGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 204 PGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|426253267|ref|XP_004020320.1| PREDICTED: mitochondrial GTPase 1 [Ovis aries]
Length = 334
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 128/227 (56%), Gaps = 22/227 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ L++ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQGSLRLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K ++H F +C +D + + + ++ELV +
Sbjct: 90 LKEQQKILQHLEREGLKHVVFTNCVKD-----ENVKQVIPTVMELVGSSYRYHRGEHAEH 144
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
VMV GVPNVGKS+LINS+ + L K K VG PG+T+ + ++ RP +
Sbjct: 145 CVMVTGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLM 198
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 199 FLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADYLLYTLN 245
>gi|332835419|ref|XP_003312882.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan troglodytes]
gi|397490621|ref|XP_003816297.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Pan paniscus]
gi|410226204|gb|JAA10321.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410255200|gb|JAA15567.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410288914|gb|JAA23057.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
gi|410351341|gb|JAA42274.1| mitochondrial GTPase 1 homolog [Pan troglodytes]
Length = 334
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++H + ++ I N +V+++L +V E+I R
Sbjct: 90 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQILPMV----TELIGRSHRYHRRENLEYC 145
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMF 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|344296110|ref|XP_003419752.1| PREDICTED: mitochondrial GTPase 1-like [Loxodonta africana]
Length = 478
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 132/237 (55%), Gaps = 23/237 (9%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG ++ WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K +
Sbjct: 166 FPLGGRDVARWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHL 225
Query: 77 IALNKKDLANPNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKL 126
+ LNK DLA+ K ++H F SC +D + + + + EL+
Sbjct: 226 LVLNKMDLADLREQKKILQHLEGEGMKNVIFTSCVKD-----ENVKQIIPTVTELIGNSY 280
Query: 127 KEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186
+ VMV+G+PNVGKS+LINSI ++ L K K VG PGVT+ +
Sbjct: 281 RYHRGENLEYCVMVIGIPNVGKSSLINSIRRLHL------RKGKATRVGGQPGVTRTVMS 334
Query: 187 -FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++ RP +++LDTPGVL P I +E GLKLAL G++ D +VGEE IA YLL LN
Sbjct: 335 RIQVCERPLVFLLDTPGVLAPRIESVEMGLKLALCGTVLDHLVGEETIADYLLYTLN 391
>gi|13325182|gb|AAH04409.1| MTG1 protein, partial [Homo sapiens]
Length = 355
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 51 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 110
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++H + ++ I N +V++++ +V E+I R
Sbjct: 111 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRKENLEYC 166
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP ++
Sbjct: 167 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMF 220
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 221 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 266
>gi|67944515|gb|AAY83879.1| GTPase-like protein [Bos taurus]
gi|67944523|gb|AAY83883.1| GTPase-like protein [Bos taurus]
gi|296472672|tpg|DAA14787.1| TPA: mitochondrial GTPase 1 precursor [Bos taurus]
Length = 332
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 22/227 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ L++ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K ++H F +C +D + + + + ELV +
Sbjct: 90 LKEQQKIIQHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGEHVEY 144
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + ++ RP +
Sbjct: 145 CIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLM 198
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL LN
Sbjct: 199 FLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245
>gi|45708796|gb|AAH26039.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|190689305|gb|ACE86427.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
gi|190690655|gb|ACE87102.1| mitochondrial GTPase 1 homolog (S. cerevisiae) protein [synthetic
construct]
Length = 334
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++H + ++ I N +V++++ +V E+I R
Sbjct: 90 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRKENLEYC 145
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMF 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|93277113|ref|NP_612393.2| mitochondrial GTPase 1 [Homo sapiens]
gi|134034174|sp|Q9BT17.2|MTG1_HUMAN RecName: Full=Mitochondrial GTPase 1; AltName: Full=GTP-binding
protein 7; Flags: Precursor
Length = 334
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++H + ++ I N +V++++ +V E+I R
Sbjct: 90 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRKENLEYC 145
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMF 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|402881899|ref|XP_003904496.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Papio anubis]
Length = 334
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 132/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + +K LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++ + ++ I N +V++++ +V E++ P
Sbjct: 90 LTEQQKIMQRLEGEGLKNVIFTNCLKDENVKQIIPMV----TELMGSSPRYHRGENLEYC 145
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K A VG PG+T+ + +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKAARVGGEPGITRAVMSRIQVSERPLMF 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 245
>gi|323489565|ref|ZP_08094792.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
gi|323396696|gb|EGA89515.1| hypothetical protein GPDM_09470 [Planococcus donghaensis MPA1U2]
Length = 288
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 133/228 (58%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+PLSS +P + + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLVDIIFELVDARLPLSSRNPMIDQVIQQKPRLIILNKMD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
+A+ KW+R+F+ +AIN+ +Q + E++E K +I++ +P +
Sbjct: 62 MADEVETKKWIRYFEDQGTRAVAINSLEGRGLQLVTKASKEILEEKWDRMIAKGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + +L A G +PGVT+ K+ I
Sbjct: 122 RAMIVGIPNVGKSTLINRLSKKSL-----------AKTGNMPGVTKAQQWIKVGK--EIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D ETGLKLA++G+IKDSV+ + +A Y L L R
Sbjct: 169 LLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQELAIYALKFLEER 216
>gi|300116300|ref|NP_001177846.1| mitochondrial GTPase 1 [Macaca mulatta]
gi|380817946|gb|AFE80847.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|383422837|gb|AFH34632.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
gi|384950308|gb|AFI38759.1| mitochondrial GTPase 1 precursor [Macaca mulatta]
Length = 334
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 132/226 (58%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + +K LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++ + ++ I N +V++++ +V E++ P
Sbjct: 90 LTEQQKIMQRLEGEGLKNVIFTNCLKDENVKQIIPMV----TELMGSSPRYHRGENLEYC 145
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K A VG PG+T+ + +++ RP ++
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHL------RKGKAARVGGEPGITRAVMSRIQVSERPLMF 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 245
>gi|442805506|ref|YP_007373655.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741356|gb|AGC69045.1| ribosome biogenesis GTPase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 301
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 138/252 (54%), Gaps = 24/252 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA R + LK+ D+VIE+ D+RIP SS +P + K RVIALNK D
Sbjct: 2 NIQWFPGHMAKTRRMLAENLKLIDVVIELLDARIPRSSQNPEIDKLTKNKPRVIALNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPTL 136
LA+P +WV +F+ D + INA + + L+ +++E KL++V + + +
Sbjct: 62 LADPRKTERWVEYFNQNGIDTVCINALTGEGIPALVVQLKKMMEPKLRKVAEKGRIQRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKSALIN I A A G PGVT++ +I P I
Sbjct: 122 RTMIVGIPNVGKSALINKIAGKAA-----------AATGDRPGVTRNKQWVRI--NPEIQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D +TGL LA +G+I+D ++ +A LL +L ++ L NR
Sbjct: 169 LLDTPGILWPKFDDPKTGLYLAFTGAIRDEILDITTLASNLLELL----AKMYPTELKNR 224
Query: 257 TEVSQSETENKH 268
+ E + H
Sbjct: 225 YKFDTLEGKAGH 236
>gi|389815303|ref|ZP_10206649.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
gi|388466082|gb|EIM08391.1| hypothetical protein A1A1_01208 [Planococcus antarcticus DSM 14505]
Length = 289
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 133/228 (58%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+PLSS +P + + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLVDIIFELVDARLPLSSRNPMIDQVIQQKPRLIILNKMD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
+A+ KW+R+F+ +AIN+ +Q + E++E K +I++ +P +
Sbjct: 62 MADEVETKKWIRYFEDQGSRAVAINSLEGRGLQLVTKASKEILEDKWDRMIAKGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + +L A G +PGVT+ K+ I
Sbjct: 122 RAMIVGIPNVGKSTLINRLSKKSL-----------AKTGNMPGVTKAQQWIKVGK--EIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D ETGLKLA++G+IKDSV+ + +A Y L L R
Sbjct: 169 LLDTPGILWPKFEDPETGLKLAVTGAIKDSVIQMQELAIYSLKFLEER 216
>gi|348507344|ref|XP_003441216.1| PREDICTED: mitochondrial GTPase 1-like [Oreochromis niloticus]
Length = 319
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 17/238 (7%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG + +WFPGHMA + ++ LK D +IE+ D+RIP S +P Q LSAK +
Sbjct: 17 FDFGGREVAHWFPGHMAKGLKQMRANLKSVDCIIEIHDARIPFSGRNPVFQDTLSAKPHL 76
Query: 77 IALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
+ LNK DLA+ + + ++ + ++ + + +LV + + ++I+ +P
Sbjct: 77 LILNKMDLADLSNKQRILKKLEKEGMTHVLFTDCLKQRDDNIKKLVPMVM-DIIASKPRF 135
Query: 137 --------LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGF 187
+MV+GVPNVGKS+LINS+ + L +K + + VG PG+T+ +
Sbjct: 136 NREENTNYCLMVIGVPNVGKSSLINSLRRTNL------KKGRASRVGGEPGITKAVLTKI 189
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
++ RP +Y+LDTPGVL P I +ETG+KLAL G+I D +VGE+ IA YLL LN G
Sbjct: 190 QVCERPIMYLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSLNRLG 247
>gi|426366662|ref|XP_004050367.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Gorilla gorilla
gorilla]
Length = 334
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 12/222 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELV-ELKLK-EVISREPTL--LVMVV 141
K ++H + ++ I N +V++++ +V EL + R L +MV+
Sbjct: 90 LTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELTGRSHRYHRRENLEYCIMVI 149
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDT 200
GVPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP +++LDT
Sbjct: 150 GVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDT 203
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
PGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 204 PGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245
>gi|75832123|ref|NP_001020498.2| mitochondrial GTPase 1 [Bos taurus]
gi|134034173|sp|Q4PS77.2|MTG1_BOVIN RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|74268183|gb|AAI03283.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Bos taurus]
Length = 332
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 22/227 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ L++ D +IEV D++IPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K ++H F +C +D + + + + ELV +
Sbjct: 90 LKEQQKIIQHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGEHVEY 144
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + ++ RP +
Sbjct: 145 CIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLM 198
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL LN
Sbjct: 199 FLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245
>gi|435853380|ref|YP_007314699.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
gi|433669791|gb|AGB40606.1| ribosome biogenesis GTP-binding protein YlqF [Halobacteroides
halobius DSM 5150]
Length = 286
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 131/224 (58%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A + +K+RL + D+VIE+ D+RIP+SS +P L L KRR+IALNKKDL
Sbjct: 3 IQWYPGHMAKAMKKVKNRLDLIDVVIELLDARIPISSRNPDLDQLLEDKRRIIALNKKDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVIS---REPTLL 137
AN + N+W +F + A+N+ + V+KL +L+ K KE+ + + +
Sbjct: 63 ANQGLTNQWQEYFSNQGISVAAMNSLNGKGVKKLFALANQLMVDKQKELAAQGRKRKDIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VG+PNVGKS LIN + Q +R G PGVT+ K+ + +
Sbjct: 123 LMIVGIPNVGKSQLINQLSQKGATR-----------TGNKPGVTKAQQWIKL--KEGFEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P + E G+KLA+ G+IK+ E +A L+ +L
Sbjct: 170 LDTPGVLWPKFEEQEVGVKLAICGAIKEGNFDSELLAYKLVEML 213
>gi|428179013|gb|EKX47886.1| hypothetical protein GUITHDRAFT_106434 [Guillardia theta CCMP2712]
Length = 263
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 139/230 (60%), Gaps = 3/230 (1%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA A R I+ R+K+SD+VIEVRD+RIPL+S +Q L+ KRRVI LNK+DL P+
Sbjct: 1 MAEAVRKIEQRIKVSDMVIEVRDARIPLTSECARIQELLARKRRVIVLNKQDLILPSERE 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-EPTLLVMVVGVPNVGKSA 150
KW R F + K D + + K L EL + +ISR + TLL M+VG+PN GKS
Sbjct: 61 KW-RKFFTDKGDTVTFTQAVHGANIKELMPSELHARGLISRLDRTLLCMIVGIPNTGKST 119
Query: 151 LINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD 210
LIN++ + K A G LPGVT+ ++ + +P +++DTPG++ + D
Sbjct: 120 LINTLRNFGYKDGKQKSPGKVANTGALPGVTKHVSTIQFHVKPPSFLVDTPGIVKMDL-D 178
Query: 211 IETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVS 260
+ GLKLAL+G+IKDS++ +A++L+ +L+ R + + L+ T+ +
Sbjct: 179 VIDGLKLALTGAIKDSLIDPLILAEFLIHMLSMRQSTNYLTELSLPTDCT 228
>gi|440909563|gb|ELR59459.1| Mitochondrial GTPase 1 [Bos grunniens mutus]
Length = 336
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 128/231 (55%), Gaps = 26/231 (11%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRI----PLSSAHPGLQPQLSAKRRVIALNKK 82
WFPGHMA + ++ LK+ D +IEV D+RI PLS +P Q L K ++ LNK
Sbjct: 30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARISFNIPLSGRNPLFQETLGLKPHLLVLNKM 89
Query: 83 DLANPNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR 132
DLA+ K +RH F +C +D + + + + ELV +
Sbjct: 90 DLADLKEQQKIIRHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGE 144
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAH 191
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + ++
Sbjct: 145 HVEYCIMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCE 198
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
RP +++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL LN
Sbjct: 199 RPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 249
>gi|432903771|ref|XP_004077219.1| PREDICTED: mitochondrial GTPase 1-like [Oryzias latipes]
Length = 319
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 138/241 (57%), Gaps = 29/241 (12%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG + +WFPGHMA + +K LK D ++E+ D+RIPLS +P Q L + +
Sbjct: 17 FDFGGREVAHWFPGHMAKGLKQMKASLKSVDCIVEIHDARIPLSGRNPLFQNTLDVRPHI 76
Query: 77 IALNKKDLAN----PNILNKWVRH------FDSCKQDYIAINAHSRSSVQKL----LELV 122
+ LNK DLA+ IL K R F C + + +S++KL LE++
Sbjct: 77 LVLNKMDLADLSNKQKILKKLERDGVKNVLFTDCLK-------QADNSIKKLVPTVLEIL 129
Query: 123 ELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ 182
E K + +MV+GVPNVGKS+LIN++ + L +K + + VG PG+T+
Sbjct: 130 ENKPRFNRDENIDYCMMVIGVPNVGKSSLINALRRTNL------KKGRASRVGGEPGITK 183
Query: 183 DI-AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +++ RP +Y+LDTPGVL P I +ETG+KLAL G+I D +VGE+ IA YLL L
Sbjct: 184 AVLTKIQVSERPKMYLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSL 243
Query: 242 N 242
N
Sbjct: 244 N 244
>gi|407795754|ref|ZP_11142712.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
gi|407020095|gb|EKE32809.1| ribosomal biogenesis GTPase [Salimicrobium sp. MJ3]
Length = 279
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 24/230 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA A R +K LK+ D VIE+ D+R PLSS +P LQ ++ K +++ + K+D
Sbjct: 2 SIQWYPGHMAKARREVKENLKLVDFVIELVDARAPLSSQNPMLQEEIQDKPKLVVMMKQD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKL-----KEVISREP 134
LA+P + +W+ +FDS +A++ ++ ++QK+ E + E KL K V R P
Sbjct: 62 LADPGVTKEWIDYFDSTFSHAVAVDVNNPKNIQKIAEASRQITEEKLEKQRAKGVNPRNP 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
M+VG+PNVGKS+LIN + K+A G PGVT+ K+ +
Sbjct: 122 R--AMIVGIPNVGKSSLINRLAH-----------KKKAETGDKPGVTKKQQWIKVKN--E 166
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P + TG +LA G+IKD V+ ++ +A ++L L R
Sbjct: 167 FELLDTPGILWPKFEEEVTGFRLAAIGTIKDQVLPQDEVAIFILNHLKER 216
>gi|410976331|ref|XP_003994576.1| PREDICTED: mitochondrial GTPase 1 [Felis catus]
Length = 332
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 23/247 (9%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG ++ WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K V
Sbjct: 20 FPLGGRDVARWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHV 79
Query: 77 IALNKKDLANPNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKL 126
+ LNK DLA+ K ++H F +C QD + + + + LV
Sbjct: 80 LVLNKMDLADLKEQQKIIQHLEGEGLKNVVFTNCLQD-----ENVKQIIPTVTGLVGSSC 134
Query: 127 KEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186
+ MV+G+PNVGKS+LIN++ + L K K VG PG+T+ +
Sbjct: 135 RYHRGESLEYCAMVIGIPNVGKSSLINALRRQHL------RKGKATRVGGEPGITRAVMS 188
Query: 187 -FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
++ RP +++LDTPGVL P I +E GLKLAL G++ D +VGEE +A YLL LN
Sbjct: 189 RIQVCERPLMFLLDTPGVLAPRIESVEMGLKLALCGTVLDHLVGEETLADYLLYTLNRHQ 248
Query: 246 TPLHWRH 252
+ RH
Sbjct: 249 LFGYVRH 255
>gi|351698046|gb|EHB00965.1| Mitochondrial GTPase 1 [Heterocephalus glaber]
Length = 333
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 127/227 (55%), Gaps = 22/227 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV DSRI +P Q L K ++ LNK DLA+
Sbjct: 29 WFPGHMAKGLKKMQSSLKLVDCIIEVHDSRISFHGRNPLFQETLGLKPHLLVLNKMDLAD 88
Query: 87 PNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
K + H F +C +D + + + K+ ELV + +
Sbjct: 89 LTEQQKIIHHLEGEGLKNIIFTNCIKD-----ENIKQIIPKITELVGSSYRYHRAENMEY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+MVVG+PNVGKS+LINS+ + L + K A VG PG+T+ + +++ RP +
Sbjct: 144 CIMVVGIPNVGKSSLINSLRRQHL------KTGKAARVGGEPGITRAVTSRIQVSERPLM 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 198 FLLDTPGVLAPQIGSVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|433446047|ref|ZP_20410178.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
gi|432000792|gb|ELK21684.1| ribosome biogenesis GTP-binding protein YlqF [Anoxybacillus
flavithermus TNO-09.006]
Length = 281
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 134/228 (58%), Gaps = 21/228 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P + ++ K R+I LNK D
Sbjct: 2 TIQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPISSRNPLIDEIVANKPRIILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK--------EVISREPT 135
+A+P++ +W+ F + + D IAI++ S + V++++ + + KL+ + I R
Sbjct: 62 MADPDVTKQWIDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRPKFEKMIAKGIKRPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ ++VG+PNVGKS LIN + +++ G PGVT+ K+ +
Sbjct: 122 MRALIVGIPNVGKSTLINRLAGKHIAK-----------TGDTPGVTKAQQWIKVGK--EL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E G KLA +G+IKD+++ + +A Y L L+T
Sbjct: 169 ELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFLST 216
>gi|291404947|ref|XP_002718812.1| PREDICTED: GTP_binding protein [Oryctolagus cuniculus]
Length = 335
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 13/223 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ L D VIEVRD+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 30 WFPGHMAKGLKKMQSSLTRVDCVIEVRDARIPLSGRNPVFQEALGLKPHLLVLNKMDLAD 89
Query: 87 PNILNKWVRHFDSCK--QDYIAINAHSRSSVQKLL----ELVELKLKEVISREPTLLVMV 140
K V+ + + ++ I N + +V++++ +L+ + VMV
Sbjct: 90 LTERQKIVQQLEEGEGLRNVIFTNCMTDENVRQVIPAVSQLIGSSHRYHRGENVDYCVMV 149
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLD 199
G+PNVGKS+LINS+ + L K K VG PG+T+ + +++ RP +++LD
Sbjct: 150 AGIPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVTSRIQVSERPLVFLLD 203
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 204 TPGVLAPRIESVETGLKLALCGTLLDHLVGEETMADYLLHTLN 246
>gi|386053525|ref|YP_005971083.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
gi|346646176|gb|AEO38801.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes Finland 1998]
Length = 287
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ N+W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTNEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|334313746|ref|XP_001378257.2| PREDICTED: mitochondrial GTPase 1-like [Monodelphis domestica]
Length = 335
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 23/240 (9%)
Query: 17 GFTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
GF+ G ++ WFPGHMA + ++ LK+ D +IE++ +RIPLS +P Q L K
Sbjct: 19 GFSFAGQDVARWFPGHMAKGLKKMQSSLKLVDCIIEMQVARIPLSGRNPLFQETLGIKPH 78
Query: 76 VIALNKKDLAN-------PNILNK-WVRH--FDSCKQDYIAINAHSRSSVQKLLELVELK 125
++ LNK DLA+ LNK V++ F +C +D + + V + +L+E
Sbjct: 79 LLVLNKMDLADLKEKQKIVGCLNKKGVKNVIFTNCIKD-----ENIKQIVPMVTKLIESG 133
Query: 126 LKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
+ +MV+GVPNVGKS+LINS+ + L +K K + VG PGVT+ +
Sbjct: 134 YRYHRGENLEYCIMVIGVPNVGKSSLINSLRRQHL------KKGKASPVGGHPGVTKAVM 187
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++ RP +++LDTPGVL P I D+ETGLKLA G+I D +VGE+ IA YLL LN +
Sbjct: 188 SRVQVCERPLMFLLDTPGVLTPRIQDVETGLKLATCGTILDHLVGEDIIADYLLFTLNKQ 247
>gi|296133540|ref|YP_003640787.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
gi|296032118|gb|ADG82886.1| ribosome biogenesis GTP-binding protein YlqF [Thermincola potens
JR]
Length = 286
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A + ++ LKI D+VIE+ D+RIP SS +P LQ L K RV+ALNK DL
Sbjct: 7 IQWFPGHMVKAKKMVRENLKIVDIVIELVDARIPSSSRNPDLQEILQGKPRVVALNKADL 66
Query: 85 ANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQKLLELVELKLKEVI------SREPT- 135
A+ N+ +W + F D C + +AIN+ + V+KL+ L + + V+ R+P
Sbjct: 67 ADQNLTERWTQVFTRDGC--NAVAINSTTGQGVEKLVALTKKAGEPVMQKLAAKGRKPRP 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ VM++G+PNVGKS+LIN + +R G PGVT+ ++ +
Sbjct: 125 IRVMILGIPNVGKSSLINKLAGKGATR-----------TGDRPGVTRGKQWIRVGR--DM 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA++G+IK+ V+ E++ LL L
Sbjct: 172 ELLDTPGILWPKFDDPEVGFKLAVTGAIKEEVINVEQVVLKLLKYL 217
>gi|348587758|ref|XP_003479634.1| PREDICTED: mitochondrial GTPase 1-like [Cavia porcellus]
Length = 333
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 131/237 (55%), Gaps = 23/237 (9%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F G N+ WFPGHMA + +K LK+ D +IEV D RI +P Q L + +
Sbjct: 19 FPLHGHNVARWFPGHMAKGLKKMKSSLKLVDCIIEVHDCRISFHGRNPLFQETLGVRPHL 78
Query: 77 IALNKKDLANPNILNKWVRH----------FDSCKQDYIAINAHSRSSVQKLLELVELKL 126
+ LNK DLA+ K ++H F +C +D + + + K+ E+V
Sbjct: 79 LVLNKMDLADLTEQQKIIQHLEGEGLKNTIFTNCVKD-----ENIKQIIPKITEIVGSSY 133
Query: 127 KEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186
+ + +MV+G+PNVGKS+LINS+ + L + K A VG PG+T+ +
Sbjct: 134 RYHRAENVEYCIMVIGIPNVGKSSLINSLRRQHL------KIGKAARVGGEPGITRAVTS 187
Query: 187 -FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+++ RP +++LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 188 RIQVSERPLMFLLDTPGVLAPRIGSVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244
>gi|212639583|ref|YP_002316103.1| ribosomal biogenesis GTPase [Anoxybacillus flavithermus WK1]
gi|338819263|sp|B7GGD6.1|RBGA_ANOFW RecName: Full=Ribosome biogenesis GTPase A
gi|212561063|gb|ACJ34118.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 284
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 21/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P + ++ K R+I LNK D
Sbjct: 5 TIQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKAD 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK--------EVISREPT 135
+A+P++ +WV F + + D IAI++ S + V++++ + + KL+ + + R
Sbjct: 65 MADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRA 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ ++VG+PNVGKS LIN + +++ G PGVT+ K+ +
Sbjct: 125 MRALIVGIPNVGKSTLINRLAGKHIAK-----------TGDTPGVTKAQQWIKVGK--EL 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA +G+IKD+++ + +A Y L L
Sbjct: 172 ELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFL 217
>gi|229367336|gb|ACQ58648.1| Mitochondrial GTPase 1, mitochondrial precursor [Anoplopoma
fimbria]
Length = 319
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 138/241 (57%), Gaps = 23/241 (9%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG + +WFPGHMA + ++ LK D +IE+ D+RIP S +P Q L + +
Sbjct: 17 FDFGGREVAHWFPGHMAKGLKQMRANLKNVDCIIEIHDARIPFSGKNPVFQETLDVRPHL 76
Query: 77 IALNKKDLAN----PNILNKW-------VRHFDSCKQDYIAINAHSRSSVQKLLELVELK 125
+ LNK DLA+ IL K V DS KQ + + + V K++E++E K
Sbjct: 77 LILNKMDLADLSNKQRILKKLQKNGVRNVLFTDSLKQR----DDNIKKLVPKVVEIIESK 132
Query: 126 LKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI- 184
+ + +MV+G+PNVGKS+LINS+ + L +K + + VG PG+T+ +
Sbjct: 133 PRFNRDEDINYCLMVIGMPNVGKSSLINSLRRTNL------KKGRASRVGGEPGITKAVL 186
Query: 185 AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++ RP +++LDTPGVL P I +ETG+KLAL G+I D +VGE+ IA YLL LN
Sbjct: 187 TKIQVCERPIMHLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLNSLNRL 246
Query: 245 G 245
G
Sbjct: 247 G 247
>gi|323484794|ref|ZP_08090151.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|355627810|ref|ZP_09049441.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
gi|323401900|gb|EGA94241.1| hypothetical protein HMPREF9474_01902 [Clostridium symbiosum
WAL-14163]
gi|354820135|gb|EHF04561.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_3_54FAA]
Length = 284
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 133/253 (52%), Gaps = 27/253 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PL S +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKNKGRIILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ KW F I +NA S ++++ LV+ +E I R+ +
Sbjct: 62 LADERYNEKWTAWFQEKGFHVIKVNARSGMGLKQIQPLVQEACREKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A ++ G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGKACTK-----------TGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E GLKLA GSI D ++ +E +A LL L + R+LN R
Sbjct: 169 LLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKEELAAELLKFL----IKHYGRNLNER 224
Query: 257 TEVSQSETENKHE 269
+ ETE+ +E
Sbjct: 225 YGI---ETEDPYE 234
>gi|332252806|ref|XP_003275545.1| PREDICTED: mitochondrial GTPase 1 [Nomascus leucogenys]
Length = 456
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 20/226 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
WFPGHMA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 156 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLAD 215
Query: 87 PNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLL 137
K ++ + ++ + N +V++++ +V E+I R
Sbjct: 216 LTEQQKIMQRLEGEGLKNVVFTNCVKDENVKQIIPMV----TELIGRSHRYHRRENLEYC 271
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L K K VG PG+T+ + + ++ RP ++
Sbjct: 272 IMVIGVPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIHVSERPLMF 325
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 326 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 371
>gi|345019909|ref|ZP_08783522.1| hypothetical protein OTW25_01110 [Ornithinibacillus scapharcae
TW25]
Length = 282
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 138/248 (55%), Gaps = 24/248 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R I+ +LK+ D V+E+ D+R PLSS +P LQ L K ++I L K+DL
Sbjct: 3 IQWFPGHMAKARREIEEKLKLVDFVMELVDARAPLSSQNPMLQQVLQNKSKMILLMKRDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ + N+W+++F +A+N + +S V K++ EL + KL ++I + +P
Sbjct: 63 ADVQVTNEWIKYFQERDIPALAVNVNDKSDVNKVIQLAKELGQKKLDKLIQKGIQPRASR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + K A VG PGVT+ K+ + +
Sbjct: 123 AMIVGIPNVGKSTLINRLAN-----------KKIAKVGDRPGVTKQQLWIKV--KKEFEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D G +LA G+IKD ++ + I +++ L L L +R
Sbjct: 170 LDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDIVVFVIRYLQENYPTL----LEDRY 225
Query: 258 EVSQSETE 265
++ Q+E E
Sbjct: 226 QIDQNEEE 233
>gi|315282092|ref|ZP_07870580.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
gi|313614262|gb|EFR87918.1| ribosome biogenesis GTP-binding protein YlqF [Listeria marthii FSL
S4-120]
Length = 288
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDILQMEEIAGYGLRFL 213
>gi|328713005|ref|XP_003244970.1| PREDICTED: mitochondrial GTPase 1-like [Acyrthosiphon pisum]
Length = 314
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 134/243 (55%), Gaps = 22/243 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM + ++ +LK D +IEV D+RIPLS +P + +S K ++ LNK D
Sbjct: 17 LRWFPGHMGKGMKQMQQKLKSVDCIIEVHDARIPLSGRNPDFKYSISGLKPHILVLNKMD 76
Query: 84 LANPNILNKW---VRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR 132
LA+ N K + H + +CK ++ + + L L++ + S
Sbjct: 77 LADLNYKQKVEEKIMHEQKISKIIYTNCKN---SLCPGVKKVMPTALSLIKGSNRYNRSE 133
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAH 191
+MV+GVPNVGKS+LINSI L K A VG + G+T+ + K++H
Sbjct: 134 NTDSRIMVIGVPNVGKSSLINSIRNTILG------KKSAAPVGAVAGITRAVQNQIKVSH 187
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWR 251
P +YVLDTPGV+ P+I ++ETGLKLAL +++D +VGEE IA YLL N +
Sbjct: 188 DPLVYVLDTPGVVSPTIKNVETGLKLALCATLQDHLVGEEIIADYLLYWFNKNNYFDYVS 247
Query: 252 HLN 254
+LN
Sbjct: 248 YLN 250
>gi|375085143|ref|ZP_09731852.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
gi|374567559|gb|EHR38772.1| ribosome biogenesis GTP-binding protein YlqF [Megamonas funiformis
YIT 11815]
Length = 293
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 131/221 (59%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+NWFPGHMA A R I LK+ D+VIE+RD+RIP SSA+P L+ + K +IALNK DL
Sbjct: 16 LNWFPGHMAKAKRIIVENLKLVDVVIELRDARIPNSSANPILKDLIGKKPHLIALNKIDL 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ NI NKW +F S + + IN+ +++L+ EL ++K + ++ +P
Sbjct: 76 ADNNINNKWEEYFTSMGKSVVKINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNAR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VM+VG+PNVGKS+LIN + A +K PGVT+ KI + ++ +
Sbjct: 136 VMIVGIPNVGKSSLINRLSGSA--SLKTADK---------PGVTRAKQWIKIKN--NLDL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D E GL LA +G+I D V ER A+ LL
Sbjct: 183 LDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIERAAEILL 223
>gi|289434556|ref|YP_003464428.1| HSR1-related GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170800|emb|CBH27342.1| HSR1-related GTPase family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 287
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|326803549|ref|YP_004321367.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650327|gb|AEA00510.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus urinae
ACS-120-V-Col10a]
Length = 293
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK D V+E+RD+RIP++S +P + + K+R+I LNK DL
Sbjct: 4 IQWFPGHMAKAKRQVQEQLKSVDWVVEIRDARIPIASKNPLIDQIIQQKKRLIVLNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELKLKEVIS---REPTLL 137
A+PN W+ H + D IAI++ + ++K LLE+ + ++ + ++ T+
Sbjct: 64 ADPNQNKLWLNHLRNKDTDAIAIDSKNNKEIKKLRHYLLEVTGGERQKWLDKGMKQKTIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+MV+G+PNVGKS LIN + K A VG PGVT+ +I S+
Sbjct: 124 LMVLGIPNVGKSTLINQLTH-----------KKSAKVGNRPGVTKGQQWVQIDKDFSL-- 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G+ LAL+G+IKD+ + IA Y + +
Sbjct: 171 LDTPGILWPKFEDPLVGMNLALTGAIKDTHYYSDDIALYAMQFM 214
>gi|291534103|emb|CBL07216.1| Ras superfamily GTP-binding protein YlqF [Megamonas hypermegale
ART12/1]
Length = 269
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 130/221 (58%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+NWFPGHMA A R I LK+ D+VIE+RD+RIP SSA+P L+ + K +IALNK DL
Sbjct: 16 LNWFPGHMAKAKRIIVENLKLVDVVIELRDARIPNSSANPILKDLIGKKPHLIALNKIDL 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ NI NKW +F S + + IN+ +++L+ EL ++K + ++ +P
Sbjct: 76 ADNNINNKWEEYFTSMGKSVVKINSLDGKGIRQLVTVADELAKVKTAKFANKGVKPRNAR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VM+VG+PNVGKS+LIN + A + PGVT+ KI + ++ +
Sbjct: 136 VMIVGIPNVGKSSLINRLSGSASLK-----------TADKPGVTRAKQWIKIKN--NLDL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D E GL LA +G+I D V ER A+ LL
Sbjct: 183 LDTPGILWPKFEDPEVGLNLAFTGAISDEVYDIERAAEILL 223
>gi|422418869|ref|ZP_16495824.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|422421929|ref|ZP_16498882.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
gi|313633473|gb|EFS00297.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL N1-067]
gi|313638163|gb|EFS03419.1| ribosome biogenesis GTP-binding protein YlqF [Listeria seeligeri
FSL S4-171]
Length = 287
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|423100352|ref|ZP_17088059.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
gi|370793353|gb|EHN61191.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua ATCC
33091]
Length = 288
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 3 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 63 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 123 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 170 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 214
>gi|16800379|ref|NP_470647.1| ribosomal biogenesis GTPase [Listeria innocua Clip11262]
gi|422412731|ref|ZP_16489690.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
gi|16413784|emb|CAC96542.1| lin1311 [Listeria innocua Clip11262]
gi|313619217|gb|EFR90980.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
S4-378]
Length = 287
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|410901296|ref|XP_003964132.1| PREDICTED: mitochondrial GTPase 1-like [Takifugu rubripes]
Length = 319
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 25/240 (10%)
Query: 17 GFTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
F GG + +WFPGHMA + +K LK D +IE+ D+RIPLS +P Q L +
Sbjct: 16 AFDFGGREVAHWFPGHMAKGIKQMKASLKSVDCIIEIHDARIPLSGRNPVFQETLDVRPH 75
Query: 76 VIALNKKDLAN----PNILNKWVRH------FDSC--KQDYIAINAHSRSSVQKLLELVE 123
++ LNK DLA+ ++L K + F C ++D I V ++EL+E
Sbjct: 76 LLVLNKMDLADVSDKKDLLEKLAKKGVKNVLFTDCLKQRDDSVIKV-----VPTVVELIE 130
Query: 124 LKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
+ +MV+GVPNVGKS+ INS+ + L +K + + VG PG+T+
Sbjct: 131 SSPRFSRCENTNYCLMVIGVPNVGKSSFINSLRRTFL------KKGRASRVGGEPGITKA 184
Query: 184 I-AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+ ++ RP +++LDTPGVL P I +ETG+KLAL G+I D +VGE+ IA YLL LN
Sbjct: 185 VLTKIQVCGRPIMHLLDTPGVLPPKIESVETGMKLALCGTILDHLVGEDIIADYLLYSLN 244
>gi|422415767|ref|ZP_16492724.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
gi|313623978|gb|EFR94077.1| ribosome biogenesis GTP-binding protein YlqF [Listeria innocua FSL
J1-023]
Length = 287
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFERLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|315302907|ref|ZP_07873643.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
gi|313628721|gb|EFR97118.1| ribosome biogenesis GTP-binding protein YlqF [Listeria ivanovii FSL
F6-596]
Length = 287
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|422809350|ref|ZP_16857761.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
gi|378752964|gb|EHY63549.1| 50S ribosomal subunit maturation GTPase RbgA [Listeria
monocytogenes FSL J1-208]
Length = 287
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|255022620|ref|ZP_05294606.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-208]
Length = 287
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|16803312|ref|NP_464797.1| ribosomal biogenesis GTPase [Listeria monocytogenes EGD-e]
gi|47097415|ref|ZP_00234964.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254828635|ref|ZP_05233322.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|254911947|ref|ZP_05261959.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|254936273|ref|ZP_05267970.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|255025708|ref|ZP_05297694.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-003]
gi|284801657|ref|YP_003413522.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284994799|ref|YP_003416567.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|386043583|ref|YP_005962388.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|386046923|ref|YP_005965255.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|386050248|ref|YP_005968239.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404283763|ref|YP_006684660.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404410569|ref|YP_006696157.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404413348|ref|YP_006698935.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|405758319|ref|YP_006687595.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|16410688|emb|CAC99350.1| lmo1272 [Listeria monocytogenes EGD-e]
gi|47014214|gb|EAL05198.1| GTPase family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258601034|gb|EEW14359.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL N3-165]
gi|258608862|gb|EEW21470.1| ribosomal biogenesis GTPase [Listeria monocytogenes F6900]
gi|284057219|gb|ADB68160.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5578]
gi|284060266|gb|ADB71205.1| ribosomal biogenesis GTPase [Listeria monocytogenes 08-5923]
gi|293589908|gb|EFF98242.1| ribosomal biogenesis GTPase [Listeria monocytogenes J2818]
gi|345533914|gb|AEO03355.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes J0161]
gi|345536817|gb|AEO06257.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes 10403S]
gi|346424094|gb|AEO25619.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-561]
gi|404230395|emb|CBY51799.1| GTPase family protein [Listeria monocytogenes SLCC5850]
gi|404233265|emb|CBY54668.1| GTPase family protein [Listeria monocytogenes SLCC2372]
gi|404236201|emb|CBY57603.1| GTPase family protein [Listeria monocytogenes SLCC2479]
gi|404239047|emb|CBY60448.1| GTPase family protein [Listeria monocytogenes SLCC7179]
gi|441470942|emb|CCQ20697.1| Ribosome biogenesis GTPase A [Listeria monocytogenes]
gi|441474069|emb|CCQ23823.1| Ribosome biogenesis GTPase A [Listeria monocytogenes N53-1]
Length = 287
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|46907499|ref|YP_013888.1| ribosomal biogenesis GTPase [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093920|ref|ZP_00231659.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|226223875|ref|YP_002757982.1| hypothetical protein Lm4b_01282 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824667|ref|ZP_05229668.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|254852674|ref|ZP_05242022.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|254932411|ref|ZP_05265770.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|255520254|ref|ZP_05387491.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-175]
gi|300765308|ref|ZP_07075292.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|386732012|ref|YP_006205508.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404280827|ref|YP_006681725.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404286688|ref|YP_006693274.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749616|ref|YP_006673082.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|405752491|ref|YP_006675956.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|405755402|ref|YP_006678866.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|406704045|ref|YP_006754399.1| GTPase family protein [Listeria monocytogenes L312]
gi|417313732|ref|ZP_12100439.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|417317426|ref|ZP_12104044.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|424714147|ref|YP_007014862.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823037|ref|ZP_18248050.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|46880767|gb|AAT04065.1| GTPase family protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017706|gb|EAL08500.1| GTPase family protein [Listeria monocytogenes str. 4b H7858]
gi|225876337|emb|CAS05046.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605992|gb|EEW18600.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL R2-503]
gi|293583968|gb|EFF96000.1| ribosomal biogenesis GTPase [Listeria monocytogenes HPB2262]
gi|293593906|gb|EFG01667.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J1-194]
gi|300513991|gb|EFK41054.1| GTPase family protein [Listeria monocytogenes FSL N1-017]
gi|328468562|gb|EGF39562.1| GTPase YlqF [Listeria monocytogenes J1816]
gi|328475116|gb|EGF45900.1| GTPase YlqF [Listeria monocytogenes J1-220]
gi|332311717|gb|EGJ24812.1| Ribosome biogenesis GTPase A [Listeria monocytogenes str. Scott A]
gi|384390770|gb|AFH79840.1| GTPase YlqF [Listeria monocytogenes 07PF0776]
gi|404218816|emb|CBY70180.1| GTPase family protein [Listeria monocytogenes ATCC 19117]
gi|404221691|emb|CBY73054.1| GTPase family protein [Listeria monocytogenes SLCC2378]
gi|404224602|emb|CBY75964.1| GTPase family protein [Listeria monocytogenes SLCC2540]
gi|404227462|emb|CBY48867.1| GTPase family protein [Listeria monocytogenes SLCC2755]
gi|404245617|emb|CBY03842.1| GTPase family protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361075|emb|CBY67348.1| GTPase family protein [Listeria monocytogenes L312]
gi|424013331|emb|CCO63871.1| Ribosome biogenesis GTPase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 287
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFL 213
>gi|323691867|ref|ZP_08106121.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
gi|323504074|gb|EGB19882.1| ribosomal biogenesis GTPase [Clostridium symbiosum WAL-14673]
Length = 284
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 133/253 (52%), Gaps = 27/253 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PL S +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLGSRNPDIDELAKNKGRIILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ KW F I +NA S ++++ LV+ +E I R+ +
Sbjct: 62 LADEKYNEKWTAWFQEKGFHVIKVNARSGMGLKQIQPLVQEACREKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A ++ G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGKACTK-----------TGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E GLKLA GSI D ++ +E +A LL L + R+LN R
Sbjct: 169 LLDTPGILWPRFEDQEVGLKLAFIGSINDEIIDKEELAAELLKFL----IKHYGRNLNER 224
Query: 257 TEVSQSETENKHE 269
+ ET++ +E
Sbjct: 225 YGI---ETKDPYE 234
>gi|365157121|ref|ZP_09353402.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
gi|363625855|gb|EHL76866.1| ribosome biogenesis GTPase A [Bacillus smithii 7_3_47FAA]
Length = 284
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+R+PLSS +P + + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVFELVDARLPLSSRNPMIDEIIQQKPRIILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
LA+ + +W+ +F S + IAIN+ + +++ + LKE R +P +
Sbjct: 62 LADSDWTKEWIAYFKSRQLPAIAINSQEGQGLSQIMNKTKELLKEKFERMRARGIKPRAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNVGKSTLINRLA-----------KRNIAKTGNTPGVTKAQQWIKVEK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKDS++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDEEVGYKLALTGAIKDSIINLQDVAAYGLRFL 213
>gi|424780492|ref|ZP_18207365.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
gi|422842894|gb|EKU27341.1| 50S ribosomal subunit maturation GTPase RbgA [Catellicoccus
marimammalium M35/04/3]
Length = 285
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
G I WFPGHMA A R + +LK+ D+VIEV D+R+P SS +P L + K R++ LNK
Sbjct: 2 GKIQWFPGHMAKARREVIEKLKLVDIVIEVVDARLPKSSQNPMLDKIIQQKPRLVLLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P KW HF++ +AINA ++++ E L + I R +
Sbjct: 62 DLADPEETKKWQAHFEAQGMACLAINAQEGKGIKQITPTCEKVLADKIQRRREKGMKDKA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M++G+PNVGKS ++N + + + A G PGVT+ KI + +
Sbjct: 122 IRAMIIGIPNVGKSTVLNRLIRKNV-----------AKTGNKPGVTKAQQWLKIDKK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWR 251
+LDTPG+L P + ETG KLAL+G+IKD ++ + IA + L + W+
Sbjct: 169 ELLDTPGILWPKFEEEETGYKLALTGAIKDDLLHFDDIALFGLEFFDRHYHEALWK 224
>gi|116872705|ref|YP_849486.1| ribosomal biogenesis GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741583|emb|CAK20707.1| GTPase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 287
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFADKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFL 213
>gi|163914893|ref|NP_001106634.1| mitochondrial GTPase 1 [Xenopus (Silurana) tropicalis]
gi|338818320|sp|A9JTX2.1|MTG1_XENTR RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|160773665|gb|AAI55523.1| LOC100127874 protein [Xenopus (Silurana) tropicalis]
Length = 311
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 143/275 (52%), Gaps = 28/275 (10%)
Query: 1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS 60
M L +++K GE +WFPGHMA + +K +LK D ++EV D+RIPLS
Sbjct: 1 MRLSWLLRKSFDFGEREVA------HWFPGHMAKGLKQMKTKLKNLDCIVEVHDARIPLS 54
Query: 61 SAHPGLQPQLSAKRRVIALNKKDLAN----PNILNKWVRH------FDSCKQDYIAINAH 110
+P Q L K ++ LNK DLA+ IL + + F C +D +
Sbjct: 55 GRNPIFQDSLGMKPHLLILNKMDLADLTQKKRILAQLKQQGVGNVIFTDCVKD-----QN 109
Query: 111 SRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK 170
+ V + ELV + +MV+GVPNVGKS+LIN++ ++ L K K
Sbjct: 110 IKHVVPVISELVGCSQRFHREENTETCIMVIGVPNVGKSSLINALRRMHL------RKGK 163
Query: 171 RATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG 229
+ VG PG+T+ + +++ P I++ DTPGVL P I +ETG+KLAL G+I D +VG
Sbjct: 164 ASRVGAEPGITRSVLTKIQVSESPLIFLFDTPGVLSPRIESVETGMKLALCGTILDHLVG 223
Query: 230 EERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSET 264
E+ +A YLL +LN + + H + ET
Sbjct: 224 EDIMADYLLYILNQQMQHRYVEHYGLEKPCADIET 258
>gi|217964585|ref|YP_002350263.1| ribosomal biogenesis GTPase [Listeria monocytogenes HCC23]
gi|290894531|ref|ZP_06557481.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|386008041|ref|YP_005926319.1| GTPase family protein [Listeria monocytogenes L99]
gi|386026640|ref|YP_005947416.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404407706|ref|YP_006690421.1| GTPase family protein [Listeria monocytogenes SLCC2376]
gi|217333855|gb|ACK39649.1| GTPase family protein [Listeria monocytogenes HCC23]
gi|290555912|gb|EFD89476.1| ribosomal biogenesis GTPase [Listeria monocytogenes FSL J2-071]
gi|307570851|emb|CAR84030.1| GTPase family protein [Listeria monocytogenes L99]
gi|336023221|gb|AEH92358.1| putative ribosome biogenesis GTP-binding protein [Listeria
monocytogenes M7]
gi|404241855|emb|CBY63255.1| GTPase family protein [Listeria monocytogenes SLCC2376]
Length = 287
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFL 213
>gi|160947173|ref|ZP_02094340.1| hypothetical protein PEPMIC_01106 [Parvimonas micra ATCC 33270]
gi|158446307|gb|EDP23302.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas micra ATCC
33270]
Length = 293
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 24/250 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ LK+ D+V E+ DSRIP+SS +P + L K R++ LNK D
Sbjct: 2 NINWYPGHMKKTMDNIRSSLKLVDIVGEIIDSRIPISSKNPVIDDVLKDKPRIMILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINA-HSR------SSVQKLLELVELKLKEVISREPTL 136
+A+ N KW+ ++ + ++A HS+ S +++L KL+E T+
Sbjct: 62 MADENETKKWLSYYRKKGYGAVVVDALHSKGLDKIYSVAKEMLADKFKKLEEKNLSAKTI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VG+PNVGKS INSI K K A +G PGVT+ + K + +
Sbjct: 122 RMMIVGIPNVGKSTFINSIS-----------KRKSAKIGDRPGVTKQVQWIKTKN--DLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPGVL P D GL LA +G+IKD ++ E +A + LN R + L NR
Sbjct: 169 LLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRDVNI----LKNR 224
Query: 257 TEVSQSETEN 266
+S+ E+
Sbjct: 225 YNLSEDSYED 234
>gi|422409470|ref|ZP_16486431.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
gi|313609087|gb|EFR84797.1| ribosome biogenesis GTP-binding protein YlqF [Listeria
monocytogenes FSL F2-208]
Length = 287
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + KRRVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ +W+ +F +A+NA + K+ + E + E R +P +
Sbjct: 62 TADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ ++
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKVGK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEDIAGYGLRFL 213
>gi|319649583|ref|ZP_08003739.1| GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398745|gb|EFV79427.1| GTPase [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+ KW++HF+ +AIN+ + +++++ + L+E R +P +
Sbjct: 62 MADKEATKKWIKHFEDKGIRALAINSQAGQGMKEIVSASQSILQEKFDRMKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS LIN + + ++R G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNAGKSTLINRLAKKNIAR-----------TGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D E GLKLAL+G+IKD+++ + +A Y L L R
Sbjct: 169 LLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQDVAVYALRFLGLR 216
>gi|332686611|ref|YP_004456385.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
gi|332370620|dbj|BAK21576.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius ATCC 35311]
Length = 284
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 132/248 (53%), Gaps = 24/248 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+R+PLSS +P L + K+R+I LNK DL
Sbjct: 3 IQWYPGHMAKAKREVTEKLKYVDIVFELIDARLPLSSRNPMLDQIIQQKKRLILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P+ KWV +F + + +NA + K++ + LKE +RE +
Sbjct: 63 ADPDQNKKWVNYFTNLGNTALLVNAKQDKGINKIVLAAKETLKEKQAREKEKGLKKRPIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + K A G PGVT+ ++ + + +
Sbjct: 123 AMCIGIPNVGKSTLMNRLI-----------GKKVAQTGNKPGVTKGQQWLRVGN--DLEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L T + L R
Sbjct: 170 LDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSDDLAIYGLEFFTT----FYPESLQERF 225
Query: 258 EVSQSETE 265
+S+S+ +
Sbjct: 226 HLSESDIQ 233
>gi|379727377|ref|YP_005319562.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
gi|376318280|dbj|BAL62067.1| 50S ribosomal subunit maturation GTPase RbgA [Melissococcus
plutonius DAT561]
Length = 284
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 132/248 (53%), Gaps = 24/248 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+R+PLSS +P L + K+R+I LNK DL
Sbjct: 3 IQWYPGHMAKAKREVAEKLKYVDIVFELIDARLPLSSRNPMLDQIIQQKKRLILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P+ KWV +F + + +NA + K++ + LKE +RE +
Sbjct: 63 ADPDQNKKWVNYFTNLGNTALLVNAKQDKGINKIVLAAKETLKEKQAREKEKGLKKRPIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + K A G PGVT+ ++ + + +
Sbjct: 123 AMCIGIPNVGKSTLMNRLI-----------GKKVAQTGNKPGVTKGQQWLRVGN--DLEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L T + L R
Sbjct: 170 LDTPGILWPKFEDPEVGKKLALTGAIKDQLLYSDDLAIYGLEFFTT----FYPESLQERF 225
Query: 258 EVSQSETE 265
+S+S+ +
Sbjct: 226 HLSESDIQ 233
>gi|169827105|ref|YP_001697263.1| hypothetical protein Bsph_1533 [Lysinibacillus sphaericus C3-41]
gi|168991593|gb|ACA39133.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 290
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 20/227 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+PLSS +P + ++ K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKPRLLVLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+ KWV +F +AIN+ +Q++ + + LKE R +P +
Sbjct: 62 MADEQETRKWVEYFAQRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNVGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E G KLAL+G+IKD++ E +A Y L L+
Sbjct: 169 LLDTPGILWPKFEDQEVGFKLALTGAIKDTITNMEDLAVYGLRFLSV 215
>gi|343520555|ref|ZP_08757524.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397513|gb|EGV10047.1| ribosome biogenesis GTP-binding protein YlqF [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 293
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 24/250 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ LK+ D+V E+ DSRIP+SS +P + L K R++ LNK D
Sbjct: 2 NINWYPGHMKKTMDNIRASLKLVDIVGEIIDSRIPISSKNPVIDDVLKDKPRIMILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINA-HSR------SSVQKLLELVELKLKEVISREPTL 136
+A+ N KW+ ++ + ++A HS+ S +++L KL+E T+
Sbjct: 62 MADENETKKWLSYYRKKGYGAVVVDALHSKGLDKIYSVAKEMLADKFKKLEEKNLSAKTI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VG+PNVGKS INSI K K A +G PGVT+ + K + +
Sbjct: 122 RMMIVGIPNVGKSTFINSIS-----------KRKSAKIGDRPGVTKQVQWIKTKN--DLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPGVL P D GL LA +G+IKD ++ E +A + LN R + L NR
Sbjct: 169 LLDTPGVLWPKFEDERIGLHLAFTGAIKDEIMDIENLAFRFIDELNKRDVNI----LKNR 224
Query: 257 TEVSQSETEN 266
+S+ E+
Sbjct: 225 YNLSEDSYED 234
>gi|381182604|ref|ZP_09891401.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
gi|380317493|gb|EIA20815.1| GTPase YlqF [Listeriaceae bacterium TTU M1-001]
Length = 287
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 130/248 (52%), Gaps = 22/248 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D++ E+ D+RIPLSS++P L+ + K+RVI LNK D
Sbjct: 3 IQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKKRVIILNKSDA 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
A+ I +WV HF + +NA + Q+L+ + KE R +
Sbjct: 63 ADEKITAEWVAHFKEKGLLAVPVNAQQGKNLHAIERAAQELMAEKFARQKERGMRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS LIN + K A G PGVT+ K+ ++ +
Sbjct: 123 AMILGIPNVGKSTLINRLV-----------KKNIAKTGNKPGVTKAQQWIKVGK--TLEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL--NTRGTPLHWRHLNN 255
LDTPG+L P D E G KLAL+G+IKD ++ E IA Y L L N W L +
Sbjct: 170 LDTPGILWPKFEDQEVGFKLALTGAIKDDLLNMEEIALYGLHFLEKNYPNQLAAWLGLPD 229
Query: 256 RTEVSQSE 263
E + +E
Sbjct: 230 YAEKTDTE 237
>gi|121533788|ref|ZP_01665615.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
gi|121307779|gb|EAX48694.1| GTP-binding protein, HSR1-related [Thermosinus carboxydivorans
Nor1]
Length = 287
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 164/359 (45%), Gaps = 83/359 (23%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I+WFPGHMA A + I+ LK+ D+VIE+ D+RIPLSSA+P + + K RVIALNK D
Sbjct: 2 HIHWFPGHMAKAYKMIREHLKLVDVVIELLDARIPLSSANPVIHELVGNKPRVIALNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE---------LKLKEVISREP 134
LA P +W+ + + + A S V+ L+ VE L+ K + R
Sbjct: 62 LAEPQWTERWIAEYRRQGLAAVPLEAVSGKGVKTLIVQVETAVRPKLKALEAKGIQGR-- 119
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
T+ +++G+PNVGKS+LIN + A+ R G PGVT+ KI +
Sbjct: 120 TVRAIILGIPNVGKSSLINRLLGAAVVR-----------TGDRPGVTRGQQWIKIGK--N 166
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ +LDTPGVL P D E KLA++G+I + V E +A LL +L + T L
Sbjct: 167 LELLDTPGVLWPKFDDQEVAFKLAITGAIHEDVYDVEAVATKLLHMLRSCYT----ERLV 222
Query: 255 NRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVE 314
R ++S PP D + DL+ + L G +
Sbjct: 223 ERFKLS---------------------PPLPEDAAALLDLIGSKRGCLRA------GGIV 255
Query: 315 DENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANS 373
D + +I LT FRTGKLGPF LD P A +
Sbjct: 256 DHEKVRRII----------------------------LTEFRTGKLGPFTLDYPPAAKN 286
>gi|318037339|ref|NP_001187294.1| mitochondrial GTPase 1 [Ictalurus punctatus]
gi|338818318|sp|E3TDS3.1|MTG1_ICTPU RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|308322643|gb|ADO28459.1| mitochondrial GTPase 1 [Ictalurus punctatus]
Length = 320
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 26/231 (11%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+WFPGHMA + ++ + D VIE+ D+RIP S +P Q L + ++ LNK DLA
Sbjct: 27 HWFPGHMAKGLKQMRASPRKVDCVIEIHDARIPFSGRNPLFQENLDVRPHLLILNKMDLA 86
Query: 86 NPN----ILNKWVRHFDSCKQDYIAINAHSR-SSVQKLLELVELKLKEVISREP------ 134
+ + IL + R D K + R +SV+K++ LV ++I P
Sbjct: 87 DTSDKMSILKQLER--DGVKNVLLTDCLKQRDTSVKKIIPLVT----DLIENAPRFHREE 140
Query: 135 --TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAH 191
+ +MV+GVPNVGKS+LIN+I + L +K K + VG PG+T+ + ++
Sbjct: 141 NRSYCLMVIGVPNVGKSSLINAIRRTNL------KKGKASRVGGEPGITKAVLTKIQVCE 194
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
RP I++LDTPGVL P I +IETG+KLAL G+I D +VGE+ IA YLL LN
Sbjct: 195 RPVIHLLDTPGVLPPKIENIETGMKLALCGTILDHLVGEDIIADYLLFSLN 245
>gi|299536767|ref|ZP_07050075.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|424737025|ref|ZP_18165481.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
gi|298727779|gb|EFI68346.1| hypothetical protein BFZC1_12128 [Lysinibacillus fusiformis ZC1]
gi|422948857|gb|EKU43233.1| hypothetical protein C518_1636 [Lysinibacillus fusiformis ZB2]
Length = 291
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+PLSS +P + ++ K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKPRLLILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+ KWV +F +AIN+ +Q++ + + LKE R +P +
Sbjct: 62 MADEQETRKWVEYFAKRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKARGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNVGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D E G KLAL+G+IKD++ E +A Y L L+
Sbjct: 169 LLDTPGILWPKFEDQEVGFKLALTGAIKDTITNMEDLAVYGLRFLS 214
>gi|20807903|ref|NP_623074.1| GTPase [Thermoanaerobacter tengcongensis MB4]
gi|20516470|gb|AAM24678.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
Length = 277
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 24/228 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A + I LK+ D+V E+ D+RIP SS +P K++++ LNK+DL
Sbjct: 2 IQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKRKKKIMLLNKEDL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE--------LVELKLKEVISREPTL 136
A+ I + W++HF + + +NA + ++L E ++E K+K+ ++ P L
Sbjct: 62 ADERITDLWIKHFKEKGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLT--PRL 119
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS IN++ + R K+A G PGVT+ + + P +
Sbjct: 120 RGMILGIPNVGKSTFINTL----IGR-------KKAKTGDKPGVTKSLHWIRT---PYLD 165
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPGVL P D TG LA++G+IKD ++ E +A +L+++L R
Sbjct: 166 LLDTPGVLWPKFEDKTTGFMLAITGAIKDEILEMEEVALFLVSILKNR 213
>gi|260887867|ref|ZP_05899130.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|330838732|ref|YP_004413312.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|260862373|gb|EEX76873.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
gi|329746496|gb|AEB99852.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sputigena
ATCC 35185]
Length = 302
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 130/226 (57%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ LK+ D+V+E+ D+RIP +S++P L+ + K RV+ALNK+DL
Sbjct: 13 IQWYPGHMKKARELVEENLKLVDVVVELLDARIPAASSNPMLREIIGDKPRVVALNKRDL 72
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE---------LKLKEVISREPT 135
A+ N+ +W+ HF + K +A+++ S +++LL L+E L K V +R+
Sbjct: 73 ADENMTRRWLEHFRAKKIPAVALDSVSGKGMKELLTLIEREAKYRTERLVSKGVAARKAR 132
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
VM++G+PNVGKS+LIN + A +A PGVT+ +I +
Sbjct: 133 --VMILGIPNVGKSSLINRLAGAA-----------KAKTADKPGVTRAKQWIRIG--ADV 177
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GLKLA +G++ D + E +A LLA L
Sbjct: 178 DLLDTPGILWPKFEDPRVGLKLAFTGAVNDEIYDLESVAHLLLATL 223
>gi|158297975|ref|XP_318086.4| AGAP004736-PA [Anopheles gambiae str. PEST]
gi|157014585|gb|EAA13293.4| AGAP004736-PA [Anopheles gambiae str. PEST]
Length = 326
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 129/229 (56%), Gaps = 17/229 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+NWFPGHM + ++ +LK D VIEV D+RIPL+ + + +S K + LNK D
Sbjct: 16 LNWFPGHMGKGMKQMQQKLKQIDCVIEVHDARIPLTGRNTEFKHTISGIKPHIFVLNKSD 75
Query: 84 LANPNILNKWVRHFDSCKQDYIAI---NAHSRSS--VQKLLELVELKLKEVI----SREP 134
L + K + QD + + N ++S ++KL+ L + + S +
Sbjct: 76 LIEKHFEGKIIERLQQENQDTMHVLFTNCKNQSCRGLRKLMPLAQTLINSSDRFNRSSQR 135
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRP 193
+M++GVPNVGKS+LIN + L+ K + VG + GVT+ + KI P
Sbjct: 136 EFCIMIIGVPNVGKSSLINVLRNRHLN------KKGASQVGAVAGVTRSVLNRIKICEDP 189
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+IY+LDTPG+L P+I D ETGL+LAL ++D +VGEE IA YLL +LN
Sbjct: 190 AIYLLDTPGILEPNIADTETGLRLALVSCLQDHLVGEELIADYLLFLLN 238
>gi|299473288|emb|CBN77688.1| Mtg1, mitochondrial YlqF-like GTPase [Ectocarpus siliculosus]
Length = 445
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 166/352 (47%), Gaps = 64/352 (18%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS-AKRRVIALNKKD 83
+NWFPGHM AT+ I+ +LK D+V EVRD+RIP +SA+ L + +K R+I LNK D
Sbjct: 71 VNWFPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANEDLDKIVGPSKARLIVLNKAD 130
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV-ELKLKEVISREPTLLVMVVG 142
L+N + + ++ F + + + ++V KLL E + + MVVG
Sbjct: 131 LSNQALEQRVLQRFKEQGKAAVYACGRTGTNVNKLLAWARERGARRGEFSTTGAIAMVVG 190
Query: 143 VPNVGKSALIN----SIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
+PNVGKS+LIN ++ + + A VG +PGVT+ ++ F+IA P +Y++
Sbjct: 191 MPNVGKSSLINLLRGKANRGGGGGGDGEGAKQVARVGAMPGVTRQVSAFRIASNPPLYLV 250
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTE 258
DTPGV+VP + GL LAL+ ++ DS V + + ++L V+ +R
Sbjct: 251 DTPGVMVPRVESKTAGLFLALTRAVPDSAVPSDVLVGFMLRVVRSR-------------- 296
Query: 259 VSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEND 318
+ + ++ L RR+ +D
Sbjct: 297 ----RSSGARDRSVTALSAPRRE-----------------------------------DD 317
Query: 319 LESLIEQQFEVLQRALKIPHK-ASEARLMVSKKFLTLFRTGKLGPFILDDVP 369
+E+L+ E ++R K A EAR + + L FR G+ G LD VP
Sbjct: 318 MEALL----EAVERESGAEGKPAPEARRICCRFLLDAFRDGQFGRITLDSVP 365
>gi|335357305|ref|ZP_08549175.1| GTP-binding protein [Lactobacillus animalis KCTC 3501]
Length = 284
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 125/223 (56%), Gaps = 29/223 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R +K LK+ D+V+E+ D+R+P SS +P L+ L K +I L K DL
Sbjct: 4 IQWFPGHMAKALRQVKENLKLVDVVLELVDARLPESSRNPQLKDLLQDKPSIIVLTKMDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE----------- 133
A+P KW+ +++ Q +AIN SVQ L++++ K+KEV++ +
Sbjct: 64 ADPKETRKWIEYYEKMGQPAVAIN-----SVQGSLKVIDKKIKEVLAEKLANKKARGILS 118
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ VM +G+PNVGKS L+N + K A VG PGVT+ K
Sbjct: 119 QRIKVMCIGIPNVGKSTLLNHLV-----------KKNVAQVGNRPGVTKSQQWLKAGK-- 165
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+ +LDTPG+L P D G KLAL+G+IKD++ E+ +A Y
Sbjct: 166 DLQLLDTPGILWPKFEDPIVGKKLALTGAIKDTLYAEDDVALY 208
>gi|167859779|gb|ACA04843.1| short integuments 2 [Picea abies]
Length = 121
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 87/111 (78%), Gaps = 2/111 (1%)
Query: 10 GLG--LGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQ 67
G+G LG+M F GG INWFPGHMAAATRAI+ RLK++DLV+EVRD+RIPLSSA+ Q
Sbjct: 3 GMGKLLGKMAFNSSGGPINWFPGHMAAATRAIRERLKLADLVVEVRDARIPLSSANGDFQ 62
Query: 68 PQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL 118
LS K+R+I LNK+DLAN NI+NKW RHFD+ KQ NAHS+ +V+++
Sbjct: 63 DILSRKKRIIILNKRDLANSNIINKWTRHFDNHKQICYFTNAHSKHNVREI 113
>gi|402574090|ref|YP_006623433.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
gi|402255287|gb|AFQ45562.1| Ras superfamily GTP-binding protein YlqF [Desulfosporosinus
meridiei DSM 13257]
Length = 275
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 21/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA R + +LK D+V+E+ D+RIP+SS +P L L +K R++ LNK D
Sbjct: 2 SIQWFPGHMAKTRRLLTEQLKWVDVVLELADARIPVSSRNPMLHKLLGSKARLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL-ELVELKL------KEVISREPTL 136
LANPN +KWV++ Y A++A S +++++ EL + L E R+ +
Sbjct: 62 LANPNWTSKWVKYLKESGPVY-AVSATSGVGIKQIVPELERMVLAKQARQAEKGIRQQMI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+VG+PN+GKS+LIN + A +A VG PGVT+ +I R +
Sbjct: 121 RVMIVGIPNIGKSSLINQLTGGA-----------QAKVGNKPGVTRGNQWVRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D+E G KLA G+IKD V E ++ +++ N
Sbjct: 168 LLDTPGMLWPKFDDLEVGRKLAALGAIKDDVFDIEELSTWVIEWFN 213
>gi|222151078|ref|YP_002560232.1| ribosomal biogenesis GTPase [Macrococcus caseolyticus JCSC5402]
gi|222120201|dbj|BAH17536.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 290
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 132/239 (55%), Gaps = 24/239 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+V E+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 3 IQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKMDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAI-----NAHSRSSVQKLLELVEL----KLKEVISREPT 135
AN N KW+ +F+ +Q + + N + S V K E+V ++K+ R
Sbjct: 63 ANLNETKKWMSYFE--EQGFYPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRA 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + + ++ A G +PGVT+ K+ ++
Sbjct: 121 IRAMIVGIPNVGKSTLINRLAKKSI-----------AKTGNMPGVTKKQQWIKVGK--TL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D G KL+L+G+IKDS+V + +A Y ++ L R +H N
Sbjct: 168 ELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYN 226
>gi|229013021|ref|ZP_04170186.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|423489014|ref|ZP_17465696.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|423494739|ref|ZP_17471383.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|423498469|ref|ZP_17475086.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|423511872|ref|ZP_17488403.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
gi|423598851|ref|ZP_17574851.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|423661322|ref|ZP_17636491.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|228748275|gb|EEL98135.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides DSM
2048]
gi|401150832|gb|EJQ58284.1| ribosome biogenesis GTPase A [Bacillus cereus CER057]
gi|401160518|gb|EJQ67896.1| ribosome biogenesis GTPase A [Bacillus cereus CER074]
gi|401237121|gb|EJR43578.1| ribosome biogenesis GTPase A [Bacillus cereus VD078]
gi|401301363|gb|EJS06952.1| ribosome biogenesis GTPase A [Bacillus cereus VDM022]
gi|402432262|gb|EJV64321.1| ribosome biogenesis GTPase A [Bacillus cereus BtB2-4]
gi|402450133|gb|EJV81967.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-1]
Length = 296
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|229134646|ref|ZP_04263455.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
gi|228648692|gb|EEL04718.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST196]
Length = 296
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|374323443|ref|YP_005076572.1| GTPase family protein [Paenibacillus terrae HPL-003]
gi|357202452|gb|AET60349.1| gtpase family protein [Paenibacillus terrae HPL-003]
Length = 286
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 27/255 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W+ +F ++A + + ++++ +L LKE I R+ + +
Sbjct: 62 LADPVVSQQWIAYFKEQGHIAFQVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPM 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + ++ A G PGVT+ K I
Sbjct: 122 RALIVGIPNVGKSTLINRMAGRSI-----------AATGDRPGVTKAQQWIKTGE---IE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + L +W L R
Sbjct: 168 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYL----VQYYWDELAAR 223
Query: 257 TEVSQ--SETENKHE 269
E+++ +TEN E
Sbjct: 224 FELTERPEDTENADE 238
>gi|163941576|ref|YP_001646460.1| ribosomal biogenesis GTPase [Bacillus weihenstephanensis KBAB4]
gi|229168577|ref|ZP_04296300.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|423518528|ref|ZP_17495009.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|423592166|ref|ZP_17568197.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|423669412|ref|ZP_17644441.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|423674409|ref|ZP_17649348.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
gi|163863773|gb|ABY44832.1| GTP-binding protein HSR1-related [Bacillus weihenstephanensis
KBAB4]
gi|228614983|gb|EEK72085.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH621]
gi|401160736|gb|EJQ68111.1| ribosome biogenesis GTPase A [Bacillus cereus HuA2-4]
gi|401232299|gb|EJR38801.1| ribosome biogenesis GTPase A [Bacillus cereus VD048]
gi|401298539|gb|EJS04139.1| ribosome biogenesis GTPase A [Bacillus cereus VDM034]
gi|401309960|gb|EJS15293.1| ribosome biogenesis GTPase A [Bacillus cereus VDM062]
Length = 296
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|299822634|ref|ZP_07054520.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
gi|299816163|gb|EFI83401.1| ribosome biogenesis GTP-binding protein YlqF [Listeria grayi DSM
20601]
Length = 289
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 20/220 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+PLSSA+P L + K+RVI LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLVDVIFELVDARLPLSSANPMLAEIIHQKKRVIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W+ +F +A++A + + K+ EL +KE T +
Sbjct: 62 LADEVRTAEWIDYFAEQGLLAVAVDAQAGKGMHKISRAAELLMKEKFDNWKTKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++R G PGVT+ K+ S+
Sbjct: 122 RAMILGIPNVGKSTLINRLAKKNIAR-----------TGNKPGVTKAQQWIKV--EKSLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D G KLAL+G+IKD ++ E IA +
Sbjct: 169 LLDTPGILWPKFEDQSVGFKLALTGAIKDDLLQMEDIASF 208
>gi|423522332|ref|ZP_17498805.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
gi|401175026|gb|EJQ82229.1| ribosome biogenesis GTPase A [Bacillus cereus HuA4-10]
Length = 296
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAIYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|330840129|ref|XP_003292073.1| hypothetical protein DICPUDRAFT_89665 [Dictyostelium purpureum]
gi|325077708|gb|EGC31403.1| hypothetical protein DICPUDRAFT_89665 [Dictyostelium purpureum]
Length = 370
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 27/249 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS---AKRRVIAL 79
G +NWFP HM + I +K D+VIE+RDSR P+S+A+P L L+ K +VI
Sbjct: 24 GKVNWFPPHMIKTRKLISETIKQIDVVIELRDSRAPISTANPILSELLTNYPKKTKVIIF 83
Query: 80 NKKDLANPNILNKWVRHFDSCKQ------------DYIAI-NAHSRSSVQKLLELVELKL 126
NK DLAN N+ + HF S Q + I++ N H ++ + + VE
Sbjct: 84 NKSDLANSNLQKSILDHFKSKDQYALFSQTVSTNNNKISLPNNHQNHPLKIIKKAVEFHN 143
Query: 127 KEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186
K+ + +PNVGKS+ INSI + +K A GPLPGVT+++ G
Sbjct: 144 KKFNQPQQQQQQQQTSLPNVGKSSFINSIRSAS-------NMSKSAKTGPLPGVTKELTG 196
Query: 187 FKIAHRPSIYVLDTPGVLVPSIPDI-ETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
FK PSI+++D+PG+++P D ET L LAL I + +V + +A +LL LN+
Sbjct: 197 FKCCDDPSIFIVDSPGIMIPGNLDYDETTLTLALLNCISERIVSQTTLADFLLFKLNSSS 256
Query: 246 TPLHWRHLN 254
++++LN
Sbjct: 257 ---NFKYLN 262
>gi|423367882|ref|ZP_17345314.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|423452861|ref|ZP_17429714.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|423470052|ref|ZP_17446796.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
gi|401082743|gb|EJP91008.1| ribosome biogenesis GTPase A [Bacillus cereus VD142]
gi|401139420|gb|EJQ46982.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X1-1]
gi|402437304|gb|EJV69328.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-2]
Length = 296
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 134/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|354584941|ref|ZP_09003832.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
gi|353191058|gb|EHB56567.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus lactis
154]
Length = 288
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 139/255 (54%), Gaps = 25/255 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D VIE+ D+R+PLSS +P + L K R++ +NK D
Sbjct: 2 TIQWFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMVDEILQGKPRLMLMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W+ +F Q ++A + + V+++ ++L LKE I ++ +
Sbjct: 62 LADPEVTRQWIAYFKEQGQPAFPVDASTGTGVKEIPGQIKLLLKEKIDKQIAKGMNPRAM 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
V++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 122 RVLIVGIPNVGKSTLINRLAGRNI-----------AETGDRPGVTKGQQWIKVTG-GEME 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + + + +W ++ R
Sbjct: 170 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFAIKYFSK----YYWDAMSER 225
Query: 257 TEVSQ--SETENKHE 269
++ + S+ EN E
Sbjct: 226 FDLKERPSDFENPDE 240
>gi|254479482|ref|ZP_05092807.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
gi|214034586|gb|EEB75335.1| putative GTPase [Carboxydibrachium pacificum DSM 12653]
Length = 277
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 24/228 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A + I LK+ D+V E+ D+RIP SS +P K++++ LNK+DL
Sbjct: 2 IQWYPGHMAKAKKEIISNLKLVDVVYEIVDARIPRSSRNPDFDEITKGKKKIMLLNKEDL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE--------LVELKLKEVISREPTL 136
A+ I + W++HF + + +NA + ++L E ++E K+K+ ++ P L
Sbjct: 62 ADERITDLWIKHFKERGIEAVKVNAITGKGFKELEEKTKEVCKDILEAKVKKGLT--PRL 119
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS IN++ + R K+A G PGVT+ + + P +
Sbjct: 120 RGMILGIPNVGKSTFINTL----IGR-------KKAKTGDKPGVTKSLHWIRT---PYLD 165
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPGVL P D G LA++G+IKD ++ E +A +L+++L R
Sbjct: 166 LLDTPGVLWPKFEDKTVGFMLAITGAIKDEILEMEEVALFLVSILKNR 213
>gi|365924909|ref|ZP_09447672.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266411|ref|ZP_14768882.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425487|gb|EJE98450.1| GTP-binding protein, GTPase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 286
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 29/227 (12%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R +K +K D+V+E+ D+R+P SS +P L L K ++ L KK
Sbjct: 2 ATIQWFPGHMAKALRQVKENIKQVDIVLELVDARLPESSRNPQLAQILQNKPSILVLTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL----- 137
DLA+ WVR+++S KQ IA+N+ + S L+++E K+K+V++ + L
Sbjct: 62 DLADSQTTAGWVRYYESQKQPAIAVNSTTGS-----LKIIEEKIKQVLADKIALQAQKGI 116
Query: 138 ------VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
VM +G+PNVGKS L+N + K A VG PGVT+ K
Sbjct: 117 LHKRIKVMCIGIPNVGKSTLLNHL-----------VKKNVAQVGNRPGVTKSQQWLKAGK 165
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+ +LDTPG+L P D G KLAL+G+IK+++ ++ IA YLL
Sbjct: 166 --DMLLLDTPGILWPKFEDPMIGKKLALTGAIKETLYAKDDIALYLL 210
>gi|335038410|ref|ZP_08531661.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
gi|334181699|gb|EGL84213.1| ribosome biogenesis GTP-binding protein YlqF [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R + +LK+ D+VIE+ D+R+P SS +P + + K R++ LNKKD
Sbjct: 2 TIQWYPGHMAKAKRQVMEKLKLIDVVIELLDARLPFSSQNPMMDELVKDKPRLVLLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSR-------SSVQKLLELVELKLKEVISREPTL 136
LA+P++ KW+R F+ +A++A S S+ Q L + K+ + + +
Sbjct: 62 LADPSVTEKWLRFFEKKAFQALAVDAQSGNGIKAIPSACQTLARDIMKKMTDKGMKPRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS+LIN + K A G PGVT+ K H +
Sbjct: 122 RALIVGIPNVGKSSLINRL-----------AKRHVAKTGDRPGVTKAQQWIKTGH--GLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GLKLA SG+I+D ++ +E +A + + L
Sbjct: 169 LLDTPGILWPKFDDPLVGLKLAASGAIRDEILPKEEVALFAIDFL 213
>gi|423483428|ref|ZP_17460118.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
gi|401140979|gb|EJQ48534.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-2]
Length = 296
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAIYALRFM 213
>gi|357053018|ref|ZP_09114122.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
gi|355386443|gb|EHG33483.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clostridioforme 2_1_49FAA]
Length = 288
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDMKLIDLVIELVDARVPLSSRNPDIDDLGAGKARMVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W F+ + I+A ++ +++++ +++ KE I R+ +
Sbjct: 62 LADEGQNARWAAWFEDKGIHVVKIDARNKGTLKQVQSVIQEACKEKIERDRRRGILNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGRAC-----------AKTGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D + GLKLAL GSI D ++ ++ +A L+ L R
Sbjct: 169 LLDTPGILWPRFEDQQVGLKLALIGSINDQILNKDELAWELIRFLKKR 216
>gi|352517745|ref|YP_004887062.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
gi|348601852|dbj|BAK94898.1| putative GTP-binding protein [Tetragenococcus halophilus NBRC
12172]
Length = 282
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 127/247 (51%), Gaps = 24/247 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D R+P+SS +P L L K R++ +NK D
Sbjct: 2 TIQWFPGHMAKAKRQVSEKIKHVDIVFELVDGRLPISSRNPMLDEILQQKPRLVLINKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KW +F+ +AIN+ + +L + L E + RE +
Sbjct: 62 LADPAQTKKWETYFNEQGYAALAINSQDNKGSKSILPKTKEALAEKLQREQEKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ I ++ +
Sbjct: 122 RAMVIGIPNVGKSTLLNRLA-----------GKKMAQTGNKPGVTKGQQW--IRYKKDLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G KLAL+G+IKD + ++ IA Y L + L +R
Sbjct: 169 LLDTPGILWPKFEDQEIGKKLALTGAIKDQLFHQDDIAIYALEFFKQ----FYPEQLADR 224
Query: 257 TEVSQSE 263
+++Q +
Sbjct: 225 YQLTQED 231
>gi|347750516|ref|YP_004858081.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
gi|347583034|gb|AEO99300.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus coagulans
36D1]
Length = 279
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SSA+P L + K R+ LNK D+
Sbjct: 4 IQWFPGHMAKARREVTEKLKLVDIVFELLDARIPVSSANPMLDELIQQKPRIKLLNKADM 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPTLL 137
A+P +W+ +AI+A S + K+++L E +++ R +
Sbjct: 64 ADPAATARWLEKLSGGNTHVLAIDAQSGKGLDKMVKLAEQILEPKWERMRAKGIRPRAIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + +++ G PGVT+ A K+ ++ +
Sbjct: 124 AMIVGIPNVGKSTLINRLAGKNIAK-----------TGNTPGVTKAQAWIKVGK--TMEL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D ETG KLAL+G+IKD+++ + ++ + L L
Sbjct: 171 LDTPGILWPKFEDKETGYKLALTGAIKDTILNLQDVSVFGLRFL 214
>gi|404370923|ref|ZP_10976238.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_2_43FAA]
gi|226912956|gb|EEH98157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
7_2_43FAA]
Length = 289
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 122/236 (51%), Gaps = 21/236 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P + K RVI LNK DL
Sbjct: 4 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLCEGKPRVILLNKSDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + W+ H S I +N + + ++ ++L LKE R + +
Sbjct: 64 SESKVTKMWMNHLSSENVKVIEVNCLTGKGLNQIKPTLDLLLKEKHDRLKAKGLVKIQMR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + K A G PGVT+ K + I +
Sbjct: 124 VMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKSKQWIKT--KMDIEM 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT-RGTPLHWRH 252
LDTPGVL P D +T L LA +G+IKD ++ E ++ L+ L + G L R+
Sbjct: 171 LDTPGVLWPKFEDEKTALNLAFTGAIKDEIMDIEELSFNLVKRLQSFYGDKLKERY 226
>gi|229061441|ref|ZP_04198786.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|423558599|ref|ZP_17534901.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
gi|228717864|gb|EEL69512.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH603]
gi|401191867|gb|EJQ98889.1| ribosome biogenesis GTPase A [Bacillus cereus MC67]
Length = 296
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +FD Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFDERGQKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAIYALRFM 213
>gi|239826597|ref|YP_002949221.1| ribosomal biogenesis GTPase [Geobacillus sp. WCH70]
gi|338819267|sp|C5D8U8.1|RBGA_GEOSW RecName: Full=Ribosome biogenesis GTPase A
gi|239806890|gb|ACS23955.1| GTP-binding protein HSR1-related [Geobacillus sp. WCH70]
Length = 283
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 21/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ +LK+ D+V E+ D+RIPLSS +P + L K R++ LNK D
Sbjct: 4 TIQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKAD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------- 135
+A+ + +W+ +F+ + +AI+A + + +++++ + LK+ ++
Sbjct: 64 MADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRP 123
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ ++VG+PNVGKS LIN + +++ G PGVT+ K+ +
Sbjct: 124 MRALIVGIPNVGKSTLINRLAGRNIAK-----------TGDKPGVTKAQQWIKVGK--EM 170
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GLKLA +G+IKD+++ + +A Y L L
Sbjct: 171 ELLDTPGILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFL 216
>gi|393201741|ref|YP_006463583.1| GTPase [Solibacillus silvestris StLB046]
gi|406664618|ref|ZP_11072393.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
gi|327441072|dbj|BAK17437.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387466|gb|EKB46890.1| Ribosome biogenesis GTPase A [Bacillus isronensis B3W22]
Length = 317
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + LK+ D+V E+ D+R+PLSS +P + + K R++ LNK+D+
Sbjct: 3 IQWFPGHMAKARRQVSESLKLVDIVFELVDARLPLSSRNPMIDEVIHQKPRLLILNKQDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+ +W+++F +AIN+ +Q + + + L + R + +
Sbjct: 63 ADEQETRRWIQYFADRGFKAVAINSLEGKGLQAVTKAAQEILADKWERMKSKGMKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + L A G +PGVT+ K+ I +
Sbjct: 123 AMIVGIPNVGKSTLINRLAKKNL-----------AKTGNMPGVTKAQQWIKVGK--EIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D E G KLAL+G+IKD+++ E +A Y L L T
Sbjct: 170 LDTPGILWPKFEDQEVGYKLALTGAIKDTIMNMEDLAVYGLRFLET 215
>gi|239623746|ref|ZP_04666777.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521777|gb|EEQ61643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 287
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PLSS +P + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLSSRNPDIDDLAKGKARMVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + +W F++ + +++ ++ +++++ +V+ KE I R+ +
Sbjct: 62 LADERVNAQWAAWFEAKNIHAVKVDSRNKGTLKQVQSVVQEACKEKIERDRKRGIMNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D GLKLAL GSI D ++ ++ +A + +L R
Sbjct: 169 LLDTPGILWPRFEDQSVGLKLALIGSINDQILNKDDLACQCIRILKER 216
>gi|145527192|ref|XP_001449396.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416984|emb|CAK81999.1| unnamed protein product [Paramecium tetraurelia]
Length = 286
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 8/230 (3%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA--KRRVIALNKK 82
I+W+PGHM A ++ R+ L +E+RD+R+P SS + + A K ++I NK
Sbjct: 7 ISWYPGHMKRAMEHLEKRITDVQLFLELRDARVPFSSKNYHFDNLMQAHNKEKIIIFNKF 66
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVG 142
DL N +I NK + + IA +A R ++++L+ + K + +M+ G
Sbjct: 67 DLCNQDITNKIIEKYKKVGIQCIATSARERLNLRELIMMTN-TYKSAKFATVGMWLMICG 125
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKR-ATVGPLPGVTQDIAGFKIAHRPSIYVLDTP 201
+PNVGKS +IN + Q P K K A P T+++AG KI P Y++DTP
Sbjct: 126 MPNVGKSTIINQLRQTT----PKLNKRKALAKSTASPCTTKNVAGIKICDEPLAYLVDTP 181
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWR 251
GV++P+I + E GLKL L G IKD +V +ER+ YL+ +N + +++
Sbjct: 182 GVMIPNITEEEQGLKLGLVGCIKDKIVTKERMLDYLVREMNQQQMEKYYK 231
>gi|306820819|ref|ZP_07454443.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310424|ref|ZP_10829390.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
gi|304551137|gb|EFM39104.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368876|gb|EJP21883.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp. AS15]
Length = 286
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 126/227 (55%), Gaps = 28/227 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I LK+ DLVIE+ D+R P+S+ +P + +S K+++I KKDL
Sbjct: 9 INWYPGHMKKTREGIVKNLKLVDLVIEILDARAPISTKNPDIDNMISNKKKIIVFTKKDL 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE---------LKLKEVISREPT 135
+ L K++ ++ + IAINA ++ L++L++ K K +I++
Sbjct: 69 TPEDSLKKFIDYYKNNNDYVIAINATDKAGTSSLIKLLDNIREENYNKNKNKGIINK--N 126
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +M+VG+PNVGKS LIN I K A G PG+T+ KI + +I
Sbjct: 127 LRIMIVGIPNVGKSTLINQIIG-----------KKSAKTGDTPGITKAQQWLKI--KGNI 173
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA----QYLL 238
+LDTPG+L P I D+ G KL+ GSIKDSV+ E I QYLL
Sbjct: 174 ELLDTPGILWPKIEDVSVGNKLSFLGSIKDSVLEIEDIYYEFIQYLL 220
>gi|357038748|ref|ZP_09100545.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
gi|355359540|gb|EHG07302.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
gibsoniae DSM 7213]
Length = 282
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 149/294 (50%), Gaps = 47/294 (15%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA A R ++ L++ D+VIE+ D+RIP SS +P + L K R++ LNK D
Sbjct: 2 DIQWYPGHMAKARRQVQQNLQMVDVVIELLDARIPASSRNPDINAILKDKPRLVVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL----KLKEVISR---EPTL 136
LA+P I W+ +F S +A++AH + V+K++ L E +K+ ++R
Sbjct: 62 LADPEITAVWLDYFTSKGLPAVAVDAHHGAGVKKMVALTERLAQPAIKKYMARGRLARLA 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVGVPNVGKS LIN + K A G PGVT+ K+ + +
Sbjct: 122 RCMVVGVPNVGKSMLINRL-----------AGKKAARTGNRPGVTRGEQWIKLGGK--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D ET KLA++G+IK+ + E I L+ L L+N
Sbjct: 169 LLDTPGILWPKFEDPETAYKLAVTGAIKEQIYNPEEICTKLVQWL-----------LDNA 217
Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFD 310
+ Y L+DL P N +V IE + GV R ++S D
Sbjct: 218 PDALAK------RYKLRDL------PENVWEV--IEKI--GVYRGFYLSGGRID 255
>gi|281202659|gb|EFA76861.1| hypothetical protein PPL_09613 [Polysphondylium pallidum PN500]
Length = 423
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 170/405 (41%), Gaps = 107/405 (26%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-------SAKR 74
GG INWFPGHM AT+ +K +K D+V+E+RDSR PLS+ +P LQ L + K
Sbjct: 33 GGKINWFPGHMIKATKQLKENIKNVDVVLEIRDSRAPLSTENPLLQDILRQTFKDGAKKT 92
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQ--------DYIAIN--------------AHSR 112
++ NK D++N N+ +K ++D + +IA +H R
Sbjct: 93 HIVVFNKADMSNHNLQSKIKLYYDQYNRLTEDRAYNKHIAFTQSASKTNSAATTHQSHPR 152
Query: 113 SSVQKLLELVELKL------------------------KEVISREPT---LLVMVVGVPN 145
Q + VEL +I R+ + ++V+GVPN
Sbjct: 153 HPYQVIKNAVELHRQQQDKLQQQQQQQENNNNNNKIIDTTIIDRKQMKKEINMLVIGVPN 212
Query: 146 VGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205
VGKS+LINSI TK A G LPGVT++I GF+++ P +++DTPG+++
Sbjct: 213 VGKSSLINSIRNAC-------RMTKSAKTGALPGVTRNITGFRVSDDPPAFLVDTPGIMI 265
Query: 206 PSI-PDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSET 264
P + D+E L L+L G+I + +V +A YLL +N + L
Sbjct: 266 PGVLEDVERALTLSLVGAISEKIVDHTVVADYLLFKMNQMRITTYVTVLKLDAPTDDINR 325
Query: 265 ENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIE 324
+H LK + +T Q+ + L+ N ND E
Sbjct: 326 LLEHICQLKGM------------------YLTNQQQFQQIKLNNDRLNSNKTNDTEQ--- 364
Query: 325 QQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVP 369
S+ + LFR GK G F LD +P
Sbjct: 365 ----------------------ASRYLINLFREGKFGNFTLDKIP 387
>gi|315648160|ref|ZP_07901261.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
gi|315276806|gb|EFU40149.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus vortex
V453]
Length = 288
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 23/249 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D VIE+ D+R+PLSS +P + L K R+I +NK D
Sbjct: 2 TIQWFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKPRLIIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W +F ++A + + ++ + ++L LKE I ++ +
Sbjct: 62 LADPEVTRQWQAYFKENSLTAFPVDASTGTGIKDIPNQIKLLLKEKIDKQIAKGMNPRAM 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
V++VG+PNVGKS LIN + + A G PGVT+ K+A +
Sbjct: 122 RVLIVGIPNVGKSTLINRLAGRNI-----------AETGDRPGVTKGQQWIKVAG-GEME 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + + + +W ++ R
Sbjct: 170 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAYFAIKYFSN----YYWETMSER 225
Query: 257 TEVSQSETE 265
++ + T+
Sbjct: 226 FDLKERPTD 234
>gi|383852977|ref|XP_003702001.1| PREDICTED: mitochondrial GTPase 1-like [Megachile rotundata]
Length = 321
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 15/230 (6%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM R ++ +LK D +IEV D+R+P+S + + L+ K + L+K D
Sbjct: 24 LRWFPGHMQKGIRQMERQLKNVDCIIEVHDARVPISGHYADFKKTLTGIKPHIFLLSKMD 83
Query: 84 LANPNILNKWVRHFDSCKQDYIA---INAHSRSSVQKLLELVELKLKEVI----SREPTL 136
LA+ + +++ + + + V+ LL L + +KE ++E +
Sbjct: 84 LADMTLKKSIIQNLSQENLSNVVFSNLKDMNCKGVKNLLPLAQKLIKESNRFNRAQETSY 143
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+M++GVPNVGKS+LIN + + L KT A VG + G+T+ ++ +I+ P I
Sbjct: 144 QIMIIGVPNVGKSSLINRLRNVNL------RKTNAAHVGGVAGITRSVSTRIQISEDPKI 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
YVLDTPG+L P + D++TGLKLAL G ++D +VG E +A YLL LN G
Sbjct: 198 YVLDTPGILTPKLNDVDTGLKLALVGCMQDHLVGPEVLADYLLFWLNKNG 247
>gi|315640708|ref|ZP_07895810.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
gi|315483463|gb|EFU73957.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus italicus
DSM 15952]
Length = 298
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + ++K DLV E+ D+R+PLSS +P L + K RV+ LNK DL
Sbjct: 11 IQWFPGHMAKARREVGEKIKFVDLVFELVDARLPLSSRNPMLDQIVQHKPRVVLLNKADL 70
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ + KW +F+S + +A NA ++ + +L + LKE +R+ +
Sbjct: 71 ADESQTRKWQAYFESLGYETLACNAKETNTTKAVLAKAKRTLKEKRARDLERGIQARAIR 130
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV+G+PNVGKS ++N + V +K A G PGVT+ ++ + + +
Sbjct: 131 AMVLGIPNVGKSTIMNRL---------VGKKI--AQTGNKPGVTKGQQWLRVGN--ELEL 177
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D E G KLAL+G+IKD ++ + IA Y L T
Sbjct: 178 LDTPGILWPKFEDQEIGKKLALTGAIKDQLLHLDDIALYGLEFFTT 223
>gi|325570948|ref|ZP_08146567.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
gi|325156274|gb|EGC68458.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
casseliflavus ATCC 12755]
Length = 309
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK D+V E+ D+R+P+SS +P L L K R+I +NK D
Sbjct: 23 TIQWFPGHMAKARREVSEKLKFVDIVFELVDARLPISSRNPMLDQLLQQKPRLILINKAD 82
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KW +F + +AINA V+ ++ + LKE I+R+ +
Sbjct: 83 LADPVQTKKWEHYFQAQGYLALAINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPRAI 142
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ + +
Sbjct: 143 RAMVIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRFGT--DLE 189
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD ++ + IA Y L
Sbjct: 190 LLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALYGL 231
>gi|160939136|ref|ZP_02086487.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
gi|158438099|gb|EDP15859.1| hypothetical protein CLOBOL_04030 [Clostridium bolteae ATCC
BAA-613]
Length = 288
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDMKLIDLVIELVDARVPLSSRNPDIDDLGAGKARMVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W F+ + ++A ++ +++++ +++ KE I R+ +
Sbjct: 62 LADERQNARWAAWFEDKGIHVVKVDARNKGTLKQVQSVIQEACKEKIERDRRRGILNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D + GLKLAL GSI D ++ ++ +A L+ L R
Sbjct: 169 LLDTPGILWPRFEDQQVGLKLALIGSINDQILNKDELACELIRFLKKR 216
>gi|387927054|ref|ZP_10129733.1| GTPase YlqF [Bacillus methanolicus PB1]
gi|387589198|gb|EIJ81518.1| GTPase YlqF [Bacillus methanolicus PB1]
Length = 289
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELVDARIPYSSRNPMIDEVIQHKPRLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+ + +W+ +F +AIN+ + + +++++ L + LKE R +P +
Sbjct: 62 MADQSKTKEWIEYFQENDIRALAINSQAGTGMKEIVALSKEILKEKFDRMKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS LIN + + + A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNAGKSTLINRLARKNI-----------AKTGNTPGVTRAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GLKLAL+G+IKD+++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDQEVGLKLALTGAIKDTILNLQDVAVYALRFL 213
>gi|257867804|ref|ZP_05647457.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257874131|ref|ZP_05653784.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257876696|ref|ZP_05656349.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|420263140|ref|ZP_14765779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
gi|257801887|gb|EEV30790.1| GTP-binding protein [Enterococcus casseliflavus EC30]
gi|257808295|gb|EEV37117.1| GTP-binding protein [Enterococcus casseliflavus EC10]
gi|257810862|gb|EEV39682.1| GTP-binding protein [Enterococcus casseliflavus EC20]
gi|394769774|gb|EJF49608.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp. C1]
Length = 288
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK D+V E+ D+R+P+SS +P L L K R+I +NK D
Sbjct: 2 TIQWFPGHMAKARREVSEKLKFVDIVFELVDARLPISSRNPMLDQLLQQKPRLILINKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KW +F + +AINA V+ ++ + LKE I+R+ +
Sbjct: 62 LADPVQTKKWEHYFQAQGYLALAINAQDNQGVKAIVPTAKQVLKEKIARDKARGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ + +
Sbjct: 122 RAMVIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRFGT--DLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD ++ + IA Y L
Sbjct: 169 LLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALYGL 210
>gi|402818516|ref|ZP_10868099.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
gi|402503982|gb|EJW14514.1| ribosome biogenesis GTPase A [Paenibacillus alvei DSM 29]
Length = 292
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 141/244 (57%), Gaps = 24/244 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A R I+ +LK+ D+ IE+ D+R+P+SS +P + L K R+I +NK D
Sbjct: 2 SIQWFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMINDILGNKPRLIIMNKCD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL----LELVELKLKEVISR--EPT-L 136
LA+P++ KW+++F + IA++A + S+V ++ +L+E K ++ I++ +P +
Sbjct: 62 LADPDVTAKWMKYFRNEGHAVIAVDASTGSNVSQIPGEARKLLEEKFQKQIAKGMKPRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ ++ +
Sbjct: 122 RALIVGIPNVGKSTLINKLAGRTV-----------AATGDRPGVTKGQQWIRVGS--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G +LA +G+I++ ++ E IA Y L + + +W L+ R
Sbjct: 169 LLDTPGILWPKFEDQEVGYRLATTGAIREEILNVEDIAFYALKYVASH----YWGRLSER 224
Query: 257 TEVS 260
++
Sbjct: 225 FGIT 228
>gi|333897176|ref|YP_004471050.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112441|gb|AEF17378.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 278
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 20/221 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHMA R I+ LKI D+V E+ D+RIP SS +P + + K+R+I LNK DLA+
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELLDARIPRSSRNPLIDDLVKNKKRIILLNKSDLAD 63
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EPTLLVMV 140
+ W +F+ I IN+ +Q + EL + ++I + + L M+
Sbjct: 64 LEVNKMWNDYFNLKGHVSININSLDSKCIQSIYELTLKECSDIIDKKRQKGIKAKLRAMI 123
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKS LINS+ KTK A G PGVT+ K P +LDT
Sbjct: 124 VGIPNVGKSTLINSL-----------TKTKNAKTGNKPGVTKSKQWIKT---PYFDLLDT 169
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
PG+L P D G+ LAL+ +IKD ++ E +A LL +L
Sbjct: 170 PGILWPKFEDEHVGMMLALTSAIKDELLNHEELAYLLLDIL 210
>gi|410460657|ref|ZP_11314331.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
gi|409926711|gb|EKN63865.1| GTPase YlqF [Bacillus azotoformans LMG 9581]
Length = 285
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 139/249 (55%), Gaps = 25/249 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+RIP SS +P + +S K R++ LNK DL
Sbjct: 3 IQWFPGHMAKAKRQVIEKLKLIDVVIELVDARIPYSSRNPMIDEIISGKPRLVLLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEV----ISREPTL 136
A+P ++W+ +F++ +AINA +++ ++ ++ L + K ++ I +
Sbjct: 63 ADPKKTDEWIIYFENKGYKCLAINAQTKNDMKNIISECKALTQEKFDKMRAKGIKNTRAI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN L+ P+ A G PGVT K+
Sbjct: 123 RALIVGIPNVGKSTLINR-----LANKPI------AKTGDRPGVTTGQQWIKVGK--EFE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G +LA++G+IK++++ + + Y L L T + +L R
Sbjct: 170 LLDTPGILWPKFEDQEVGYRLAVTGAIKENLLDFQDVVVYALKFL----TKYYPDNLKER 225
Query: 257 TEVSQSETE 265
++++ TE
Sbjct: 226 YQLNEISTE 234
>gi|340355018|ref|ZP_08677712.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
gi|339622815|gb|EGQ27328.1| ribosome biogenesis GTP-binding protein YlqF [Sporosarcina
newyorkensis 2681]
Length = 284
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 126/226 (55%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKLKLVDIVFELIDARLPLSSRNPMIDEVIQQKPRLLILNKMD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELK---LKEVISREPTL 136
LA+ +W+ +F+ +AIN+ +Q + E+++ K +K+ R +
Sbjct: 62 LADEVQTKRWIAYFEERGFRTVAINSFEGKGLQTVTKAAKEILQPKFDRMKQRGIRPGAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ A I + +
Sbjct: 122 RAMIVGIPNVGKSTLINRLA-----------KKNIAKTGNKPGVTK--AQQWIKYGKELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P D E G KLAL+G+IKDSV+ E +A Y L L+
Sbjct: 169 LLDTPGVLWPKFEDPEVGFKLALTGAIKDSVLNMEELAVYGLRFLS 214
>gi|297544724|ref|YP_003677026.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842499|gb|ADH61015.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 277
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D++ E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + I +N+ + ++++ E + ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKEKGIEAIKVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
++VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 IIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRTLHWIK---TPYFDIL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D ETG+ LA++G+IKD ++ E IA L+AVL
Sbjct: 168 DTPGILWPKFDDKETGIMLAITGAIKDEILNIEEIALNLVAVL 210
>gi|152976204|ref|YP_001375721.1| ribosomal biogenesis GTPase [Bacillus cytotoxicus NVH 391-98]
gi|152024956|gb|ABS22726.1| GTP-binding protein HSR1-related [Bacillus cytotoxicus NVH 391-98]
Length = 287
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ + +W+ +F+ I+INA + ++++ ELV+ K ++I++ +P +
Sbjct: 63 ADDRLTKQWITYFEEKGHKAISINAQAGQGMKEITAACKELVKEKFDKMIAKGIKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME 214
>gi|118479060|ref|YP_896211.1| ribosomal biogenesis GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418285|gb|ABK86704.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
str. Al Hakam]
Length = 314
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 136/265 (51%), Gaps = 39/265 (14%)
Query: 20 KGGGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVI 77
K GGN I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++
Sbjct: 14 KEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLV 73
Query: 78 ALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------ 131
LNK D+A+ + +W+ +F I+INA + ++++ ++ +KE
Sbjct: 74 VLNKADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKG 133
Query: 132 -REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA 190
R + ++VG+PNVGKS LIN + K A G PGVT K+
Sbjct: 134 IRPRAIRALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVG 182
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW 250
+ +LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 183 K--EMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME-------- 232
Query: 251 RHLNNRTEVSQSETENKHEYNLKDL 275
+H R K YNL D+
Sbjct: 233 KHYPERL---------KERYNLNDI 248
>gi|358064079|ref|ZP_09150668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
gi|356697712|gb|EHI59283.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium hathewayi
WAL-18680]
Length = 283
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 20/232 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DL+IEV D+R+P SS +P + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLIIEVVDARVPFSSRNPDIDELGQNKARIVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
L+N + W F S I +N+ S + ++++ +V+ KE I R+ +
Sbjct: 62 LSNERWNDAWAEWFKSQDCHVIKVNSRSGAGLKQINSVVQEACKEKIERDRRRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A ++ G PGVT+ ++ S+
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKACTK-----------TGNKPGVTKGNQWIRLNK--SLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPL 248
+LDTPG+L P + E GL LA GSI D ++ +E +A LL + P+
Sbjct: 169 LLDTPGILWPRFENQEVGLHLAFIGSINDEILNKEEMAVELLKFMMENYRPV 220
>gi|157138211|ref|XP_001664178.1| hypothetical protein AaeL_AAEL003813 [Aedes aegypti]
gi|122068838|sp|Q17EJ1.1|MTG1_AEDAE RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|108880663|gb|EAT44888.1| AAEL003813-PA [Aedes aegypti]
Length = 316
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 39/244 (15%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+NWFPGHM + ++ +LK D VIEV D+RIPLS + + +S K ++ LNKKD
Sbjct: 17 LNWFPGHMGKGMKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHILVLNKKD 76
Query: 84 LANPNILNKWV----------RH--FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI- 130
+ + + V RH F +CK S + ++K++ L + ++I
Sbjct: 77 KIDRRLQGRVVDRLQQEDSEARHILFTNCKD-------QSCNGIRKVMPLAQ----DLIL 125
Query: 131 -------SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
+ + +M++GVPNVGKS+LIN + L+ K + VG + G+T+
Sbjct: 126 SSNRFNRADQKEYCIMIIGVPNVGKSSLINVLRNRHLN------KKGASQVGAVAGITRS 179
Query: 184 IAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+ KI+ P +Y+LDTPG+L P+I D ETGL+LAL ++D +VGEE IA YLL +LN
Sbjct: 180 VLNKIKISEDPLVYLLDTPGILKPNIADTETGLRLALVSCLQDHLVGEELIADYLLYLLN 239
Query: 243 TRGT 246
RG
Sbjct: 240 KRGN 243
>gi|433462620|ref|ZP_20420197.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
gi|432188568|gb|ELK45749.1| ribosomal biogenesis GTPase [Halobacillus sp. BAB-2008]
Length = 280
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 122/227 (53%), Gaps = 24/227 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R +LK+ D VIE+ D+R P SS +P L L K ++I L KKD
Sbjct: 2 TIQWYPGHMAKAKREAAEKLKLVDFVIELVDARAPFSSQNPMLHEILQEKPKMIVLMKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE---------LVELKLKEVISREP 134
LA+P +W+ +F++ +AI A+ + VQ++++ L +LK K V R
Sbjct: 62 LADPQKTAEWIEYFEASSIPAVAIEANKKQDVQRVVQKAKELGREKLEKLKAKGVRPRAS 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
M++G+PNVGKS LIN + K A G PGVT K+ +
Sbjct: 122 R--AMILGIPNVGKSTLINRLAN-----------KKMAKTGDKPGVTTKQQWIKV--KKE 166
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P + E G +LA G+IKD ++ +E +A Y+L +
Sbjct: 167 FELLDTPGILWPKFEEEEVGYRLAAIGTIKDQILPKEDVAAYVLDYM 213
>gi|261408013|ref|YP_003244254.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
gi|261284476|gb|ACX66447.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
Y412MC10]
Length = 288
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 23/249 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D VIE+ D+R+PLSS +P + L K R++ +NK D
Sbjct: 2 TIQWFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKPRLVIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W +F ++A + + V+ + ++L LKE I ++ +
Sbjct: 62 LADPEVTRQWQAYFKEAGLTAFPVDASTGTGVKDIPNQIKLLLKEKIDKQIAKGMNPRAM 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
V++VG+PNVGKS LIN + + A G PGVT+ K+A +
Sbjct: 122 RVLIVGIPNVGKSTLINRLAGRNI-----------AETGDRPGVTKGQQWIKVAG-GEME 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + + +W ++ R
Sbjct: 170 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFAIKYFAN----YYWETMSER 225
Query: 257 TEVSQSETE 265
++ + T+
Sbjct: 226 FDLKERPTD 234
>gi|406669367|ref|ZP_11076644.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
gi|405583402|gb|EKB57343.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia ignava CCUG
37419]
Length = 290
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 20/212 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R +L + D+V+E+ D+RIP SS +P + + +KRRVIALNK D
Sbjct: 2 TIQWYPGHMAKAKRLAIEKLSMVDIVVELIDARIPQSSRNPVIDEIIGSKRRVIALNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P +WV+ F S IAI+A + +++L EL+ ++ V + +
Sbjct: 62 LADPVATREWVQTFQSQGHAAIAIDAQHQKGIRQLKELIRKEMAPVFEEQAAKGILSKNI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS LIN RF + + A G PGVT+ KI
Sbjct: 122 RLMILGIPNVGKSTLIN--------RFVGKNQ---AITGNKPGVTKAQRWLKIDR--DFE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D G+KLA++G+IKD ++
Sbjct: 169 LLDTPGILWPKFEDQTIGMKLAITGAIKDDLL 200
>gi|418964799|ref|ZP_13516587.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344200|gb|EID22369.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. constellatus SK53]
Length = 283
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 121/211 (57%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L +S K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVSDKPKLLILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ ++ +W R+F+S +AIN+ +S+V+K+ E + +KE I+R+ TL
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|359411414|ref|ZP_09203879.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
gi|357170298|gb|EHI98472.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
DL-VIII]
Length = 287
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P ++ L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIKKLLEGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + +W+ + + + +N ++ + ++ LKE R T+
Sbjct: 63 TDNRVTKEWINYLTEEEVKVLEVNCLKGDGLKNIKPMLLSLLKEKHDRLKAKGMVNITMR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + + A G PGVT+ K I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNNI-----------AKTGDKPGVTKSKQWIKTGM--GIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D ET L LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIEELALKLVERL 213
>gi|289578448|ref|YP_003477075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
gi|289528161|gb|ADD02513.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
italicus Ab9]
Length = 277
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D++ E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVIYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + I +N+ + ++++ E + ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKEKGIEAIKVNSITGFGLKEINEATQRVCQDILEKKRQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
++VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 IIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRTLHWIK---TPYFDIL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D ETG+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKETGIMLAITGAIKDEILNIEEIALNLVAIL 210
>gi|339009353|ref|ZP_08641925.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
gi|338773831|gb|EGP33362.1| ribosome biogenesis GTPase A [Brevibacillus laterosporus LMG 15441]
Length = 298
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 20/220 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK D+VIE+ D+R+PLSS +P + ++ K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKQVDVVIELLDARLPLSSRNPMIDEIVAEKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P++ W+R+F + I+A S V KL EL + +++ + +
Sbjct: 62 LADPSVTEMWIRYFKEQGLRTLPIDALSGRGVNKLPELCQELASDMLQKRADRGMLARAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS+LIN + K A G P VT+ K+ ++
Sbjct: 122 RIMILGIPNVGKSSLINRLA-----------KRSVAQTGDRPAVTKSQQWVKMGD--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D GL+LA SG+IKD ++ +A Y
Sbjct: 169 LLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFSEVALY 208
>gi|138894725|ref|YP_001125178.1| ribosomal biogenesis GTPase [Geobacillus thermodenitrificans
NG80-2]
gi|134266238|gb|ABO66433.1| GTP-binding protein [Geobacillus thermodenitrificans NG80-2]
Length = 286
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D+ E+ D+R+P+SS +P + L K R+I LNK D+
Sbjct: 4 IQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADM 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPTL 136
A+ + +W+R+F + IAI+A S + V++++ E+V+ K +++ I +
Sbjct: 64 ADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPV 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 124 RALIVGIPNVGKSTLINRLAGRHI-----------AKTGDKPGVTKAQQWIKVGK--EME 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G +LA++G+IKD ++ + +A Y L L++
Sbjct: 171 LLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSS 217
>gi|28210940|ref|NP_781884.1| ribosomal biogenesis GTPase [Clostridium tetani E88]
gi|28203379|gb|AAO35821.1| GTP-binding protein [Clostridium tetani E88]
Length = 298
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 135/257 (52%), Gaps = 32/257 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INWFPGHMA R +K LK+ D +IE+RD+RI SSA+P ++ K R+I LNK D
Sbjct: 19 DINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSD 78
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE------------VIS 131
L + N+W++ IAIN+ S ++K+ ++ LKE +++
Sbjct: 79 LGEEKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVN 138
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
R VMVVG+PNVGKS IN + + ++ A G PGVT+ K
Sbjct: 139 R-----VMVVGIPNVGKSTFINRMAKSSI-----------AKTGDRPGVTKSRQWIK--T 180
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN-TRGTPLHW 250
+ + ++DTPG+L P D + GL LA +G+IKD ++ E +A L+ L+ G L
Sbjct: 181 KIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKE 240
Query: 251 RH-LNNRTEVSQSETEN 266
R+ L+ E+ EN
Sbjct: 241 RYKLDKLEEIPLDNMEN 257
>gi|15895038|ref|NP_348387.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum ATCC 824]
gi|15024731|gb|AAK79727.1|AE007685_3 Predicted GTPase, YLQF B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
Length = 283
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA TR I+ LK+ D VIE+RD+RI SS++P + K R+I LNK DL
Sbjct: 6 INWFPGHMAKTTREIRENLKLVDAVIEIRDARIVYSSSNPDINSICKDKPRIILLNKFDL 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA---HSRSSVQKLL-ELVELKLKEVISR---EPTLL 137
A +I + WV+ S I +NA +S++ L EL++ KL + ++ +
Sbjct: 66 AEKSITDNWVKALSSESIRAIPVNALEGRGLNSIKPALNELLKPKLDNMAAKGIQNYIIR 125
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS+ IN + K K A VG PGVT+ K I +
Sbjct: 126 VMVVGIPNVGKSSFINKMA-----------KNKVAKVGNKPGVTKSKQWIK--TNIGIEL 172
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D + GL LA +G+IKD ++ E +A L+ L
Sbjct: 173 MDTPGVLWPKFQDQKVGLNLAFTGAIKDEIMDIEELALKLVQFL 216
>gi|403069205|ref|ZP_10910537.1| hypothetical protein ONdio_06380 [Oceanobacillus sp. Ndiop]
Length = 283
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D V+E+ D+R PLSS +P LQ L K ++I L KKDL
Sbjct: 3 IQWFPGHMAKARREVEEKLKLVDFVMELVDARAPLSSQNPMLQQVLQHKSKMIVLMKKDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL--------VELKLKEVISREPTL 136
A+P KW+ HF + IA++ ++++ + +++++ +E LK+ I P+
Sbjct: 63 ADPRETEKWINHFREKEVPAIAVDVNNKADINRVIQMAKELGQVKMEKLLKKGIKPRPS- 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PG+T+ K+ +
Sbjct: 122 RAMIVGIPNVGKSTLINRLAN-----------KKIAKTGDRPGITKQQLWIKV--KKDFE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G +LA G+IKD ++ + I +++ +
Sbjct: 169 LLDTPGILWPKFEDQTVGYRLAAIGTIKDQLLSLQDITAFVIDYM 213
>gi|343525032|ref|ZP_08761988.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343396904|gb|EGV09440.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 283
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ ++ +W R+F+S +AIN+ +S+V+K+ E + +KE I+R+ TL
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P D + LKLAL+G+IKD ++ + +A +
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLLPMDEVAIF 209
>gi|329924289|ref|ZP_08279444.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
gi|328940771|gb|EGG37086.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF5]
Length = 288
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 23/249 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D VIE+ D+R+PLSS +P + L K R++ +NK D
Sbjct: 2 TIQWFPGHMTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKPRLVIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W +F ++A + + V+ + ++L LKE I ++ +
Sbjct: 62 LADPEVTRQWQAYFKEGGLTAFPVDASTGTGVKDIPNQIKLLLKEKIDKQIAKGMNPRAM 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
V++VG+PNVGKS LIN + + A G PGVT+ K+A +
Sbjct: 122 RVLIVGIPNVGKSTLINRLAGRNI-----------AETGDRPGVTKGQQWIKVAG-GEME 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + + +W ++ R
Sbjct: 170 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFAIKYFAN----YYWETMSER 225
Query: 257 TEVSQSETE 265
++ + T+
Sbjct: 226 FDLKERPTD 234
>gi|415886553|ref|ZP_11548333.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
gi|387587240|gb|EIJ79563.1| ribosomal biogenesis GTPase [Bacillus methanolicus MGA3]
Length = 290
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKPRLLLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+ + +W+++F+ +AIN+ + + +++++ L LKE R +P +
Sbjct: 62 MADQSKTKEWIQYFNMNGIRALAINSQAGTGMKEIVALSREILKEKFDRMKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS LIN + + + A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNSGKSTLINRLARKNI-----------AKTGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GLKLAL+G+IKD+++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDEEVGLKLALTGAIKDTILNLQDVAVYALRFL 213
>gi|307212582|gb|EFN88297.1| Mitochondrial GTPase 1 [Harpegnathos saltator]
Length = 314
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 29/270 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
I WFPGHM R ++ RL+ D ++EV D+R+P+S + L++ K + LNKKD
Sbjct: 19 IRWFPGHMTKGLRQMQQRLRSIDCILEVHDARVPISGHYADFSRTLTSLKPHIFILNKKD 78
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPTL 136
LA+ + V + I ++ ++V L K ++ S E +
Sbjct: 79 LADTSYSESIVSTLNRKGLSNILFTNLKNQHCKETKKIVPLAKKLILNSNRYNRSGELSY 138
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSI 195
+MV+GVPNVGKS+LIN + LS K +VG G+T+ + KI+ P++
Sbjct: 139 TMMVIGVPNVGKSSLINRLRSNNLSL------GKATSVGAEAGITRSVLTHIKISEEPTV 192
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
Y++DTPG+L+P+I DI +GLKLAL G ++D VVG +A YL L+W + +
Sbjct: 193 YLIDTPGILIPTIKDIHSGLKLALVGCLQDHVVGSYTLADYL----------LYWLNKES 242
Query: 256 RTEVSQ----SETENKHEYNLKDLRPKRRK 281
R E +Q SE + +Y L + K +K
Sbjct: 243 RYEYTQELGLSEPNDNVQYVLTFIAAKFKK 272
>gi|196247656|ref|ZP_03146358.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
gi|196212440|gb|EDY07197.1| GTP-binding protein HSR1-related [Geobacillus sp. G11MC16]
Length = 288
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D+ E+ D+R+P+SS +P + L K R+I LNK D+
Sbjct: 6 IQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDDILGQKTRLILLNKADM 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPTL 136
A+ + +W+R+F + IAI+A S + V++++ E+V+ K +++ I +
Sbjct: 66 ADEAVTEQWIRYFRDQGRTAIAIDAQSGTGVKQIVAAAKEMVKDKFEKMRAKGIKNPRPV 125
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 126 RALIVGIPNVGKSTLINRLAGRHI-----------AKTGDKPGVTKAQQWIKVGK--EME 172
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G +LA++G+IKD ++ + +A Y L L++
Sbjct: 173 LLDTPGILWPKFEDEDVGYRLAVTGAIKDEILNLQDVAVYALRFLSS 219
>gi|380017946|ref|XP_003692903.1| PREDICTED: mitochondrial GTPase 1-like [Apis florea]
Length = 324
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 67/352 (19%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM + ++H+LK D +IEV D+RIP+S + L+ K + LNK D
Sbjct: 22 LRWFPGHMGKGLKQMRHQLKNVDCIIEVHDARIPISGHYADFNNVLTGLKPHIFILNKID 81
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPTL 136
L++ + + + I + + EL+ L K + S E +
Sbjct: 82 LSDMRFKDSIIECLNKKGLFNILFTNFKNVKCEGVRELIPLAQKLIKNSNRYNRSEESSF 141
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+M++G+PNVGKS+LIN + R + K+ VG + G+T+ ++ KI+ P+I
Sbjct: 142 QMMIIGIPNVGKSSLINRL------RSNILHKSNAVQVGGIAGITRSVSTRVKISENPNI 195
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
YVLDTPG+L+P I DI TGLKLAL+ ++D +VG E +A +L L W + +
Sbjct: 196 YVLDTPGILIPKINDINTGLKLALASCMQDHLVGPELLADFL----------LFWLNKHE 245
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
R E Q K N+ D+ + YI +++ L + +DG
Sbjct: 246 RFEYVQKLGLTKPSDNISDV------------LIYI---AAKLKKTLKI--KNYDGKKII 288
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDD 367
+ DL ++ FL+LFR G+LG + LD+
Sbjct: 289 KPDLR-------------------------FAAEYFLSLFRKGELGYYCLDE 315
>gi|229031468|ref|ZP_04187468.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
gi|228729757|gb|EEL80737.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1271]
Length = 296
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKDQMAISINAQAGQGMKEIAAACKVLVKEKFDKMAAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|149183640|ref|ZP_01862057.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
gi|148848657|gb|EDL62890.1| ribosomal biogenesis GTPase [Bacillus sp. SG-1]
Length = 287
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++IE+ D+RIP+SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLVDIIIELVDARIPISSRNPMIDEVVQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
+A+ + ++W+ +F +A+NA + + ++ E++ K + SR +P +
Sbjct: 62 MADKVLTDQWINYFSERGIKALAVNAQGGTGLGDIVKASKEILSEKFDRMRSRGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNVGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD+++ + IA Y L L
Sbjct: 169 LLDTPGILWPKFEDEEVGYKLALTGAIKDTILNLQDIAVYGLRFL 213
>gi|158320502|ref|YP_001513009.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
gi|158140701|gb|ABW19013.1| GTP-binding protein HSR1-related [Alkaliphilus oremlandii OhILAs]
Length = 280
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ +LK+ D+V E+ D+RIP+SS +P + + K +VI LNK D
Sbjct: 2 NINWYPGHMKKTKELIREQLKLVDIVYELLDARIPISSRNPDVDQIIGDKPKVIILNKID 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------REPT-L 136
LA+P KWV +F I IN + +++L E E +K+ + R P
Sbjct: 62 LADPRATAKWVEYFKRNSITVIPINTITGEGIRQLAEESERAIKDKMDALIKKGRRPRPA 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VG+PNVGKS+LIN + K G PGVT+ ++ + ++
Sbjct: 122 RIMIVGIPNVGKSSLINKLAG-----------RKSTQTGDRPGVTKSKQWIRL--KGNME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E L LA SG+IKD ++ E +A LL +L
Sbjct: 169 LLDTPGILWPKFEDEEVALNLAFSGAIKDEIMDTETLAYKLLEIL 213
>gi|313885159|ref|ZP_07818911.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619850|gb|EFR31287.1| ribosome biogenesis GTP-binding protein YlqF [Eremococcus coleocola
ACS-139-V-Col8]
Length = 290
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 28/230 (12%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R + +LK+ D+VIE+ D+RIP SS +P LQ + K+R+I LNK
Sbjct: 2 ATIQWFPGHMAKARREVSEKLKLIDVVIELVDARIPESSRNPILQDLIQDKKRIIVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL----- 137
DLA+P + WV+ + +Q + A++ ++ + K L+ +E +KE+++ E L
Sbjct: 62 DLADPKLSQAWVKAY--LEQGFKALSIDAQHN--KGLKGLEKAIKELMAPEFEKLAQKGL 117
Query: 138 ------VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
+M++G+PNVGKS LIN RF + +A G PGVT+ KI
Sbjct: 118 KPRPIRLMILGIPNVGKSTLIN--------RFVGKN---QAITGNKPGVTKAQRWLKIGK 166
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
S +LDTPG+L P D + G+ LAL+G+IKD ++ + +A LLA+L
Sbjct: 167 --SFELLDTPGILWPKFEDEQVGINLALTGAIKDQLLHMDDLALTLLAIL 214
>gi|433655064|ref|YP_007298772.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293253|gb|AGB19075.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 278
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHMA R I+ LKI D+V E+ D+RIP SS +P + + K+R+I LNK DL++
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDELVKNKKRIILLNKADLSD 63
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EPTLLVMV 140
+ W +F + IN+ + SS++++ EL + +I R + L M+
Sbjct: 64 SAVNKMWNEYFKKLGIASLNINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKAKLRAMI 123
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKS LINS+ KTK A G PGVT+ + P +LDT
Sbjct: 124 VGIPNVGKSTLINSL-----------SKTKSAKTGNKPGVTK---AKQWIRTPYFDLLDT 169
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
PG+L P D G+ LAL+ +IKD ++ E +A LL +L
Sbjct: 170 PGILWPKFEDEHVGIMLALTAAIKDELLNHEELAFSLLKIL 210
>gi|355677530|ref|ZP_09060433.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
gi|354813095|gb|EHE97708.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium citroniae
WAL-17108]
Length = 282
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 139/254 (54%), Gaps = 31/254 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARVPLSSRNPDIDSLAAGKARMVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + +W F++ + I+A ++ +++++ +V+ ++ I R+ +
Sbjct: 62 LADERLNAQWAAWFEAKGIHVVKIDARNKGTLKQVQGVVQQACRDKIERDRKRGILNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RTMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNK--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR--GTPLHWRHLN 254
+LDTPG+L P D GLKLAL GSI D ++ ++ +A + +L + GT L
Sbjct: 169 LLDTPGILWPRFDDQSVGLKLALIGSINDQILNKDELAGQCIRILKEQYPGTLL------ 222
Query: 255 NRTEVSQSETENKH 268
NR ++ ETE+K
Sbjct: 223 NRFDL---ETEDKE 233
>gi|423401320|ref|ZP_17378493.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|423457979|ref|ZP_17434776.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|423477976|ref|ZP_17454691.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
gi|401148363|gb|EJQ55856.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5X2-1]
gi|401654310|gb|EJS71853.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-2]
gi|402428138|gb|EJV60235.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6X1-1]
Length = 296
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGQMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|410727082|ref|ZP_11365305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
gi|410599417|gb|EKQ53970.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
Maddingley MBC34-26]
Length = 287
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P ++ L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + +W+ + + +N ++ + + LKE R T+
Sbjct: 63 TDSKVTKEWINYLTEDDVKVLEVNCLKGDGLKNIKPTLLTLLKEKHDRLKAKGMVNITMR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + + A G PGVT+ K I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNNI-----------AKTGDRPGVTKSKQWIKTGI--GIEM 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D ET L LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIEELALKLVERL 213
>gi|229174504|ref|ZP_04302036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
gi|228609064|gb|EEK66354.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus MM3]
Length = 296
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F Q I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGQMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|253573502|ref|ZP_04850845.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251847030|gb|EES75035.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 287
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 24/245 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+VIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTKARRQIQEKLKLIDVVIELLDARLPLSSRNPMIDEILQGKPRLIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W+ +F + +A S ++++ L + LKE I ++ +
Sbjct: 62 LADPAVTRQWIAYFKEEGHLAVEADAASGQGLKEIPRLAKELLKERIEKQIAKGIKPRAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINGLA-----------GRKIAATGDRPGVTKGQQWIKVGT--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+I++ ++ E IA + + L +W R
Sbjct: 169 LLDTPGILWPKFEDQNVGYRLAVTGAIREEILNVEDIAFFAVKYL----VRYYWEPFKER 224
Query: 257 TEVSQ 261
E+ Q
Sbjct: 225 FELDQ 229
>gi|187934506|ref|YP_001885449.1| ribosomal biogenesis GTPase [Clostridium botulinum B str. Eklund
17B]
gi|187722659|gb|ACD23880.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
Length = 285
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P + L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ +W++H + +N ++ + ++ LKE R T
Sbjct: 63 TEGKVTKEWIKHLTKDDVKVLEVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + ++ A G PGVT+ K + I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNSI-----------AKTGDKPGVTKSKQWIKTS--IGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P D ET L LA +G+IKD ++ E ++ L+ L +
Sbjct: 170 LDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIEELSYKLVERLQS 215
>gi|407977608|ref|ZP_11158445.1| GTPase YlqF [Bacillus sp. HYC-10]
gi|407415861|gb|EKF37442.1| GTPase YlqF [Bacillus sp. HYC-10]
Length = 282
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K +++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+P + +W HF+ +AIN+ + +++ + + LKE R +P +
Sbjct: 62 KADPRMTKEWQAHFEKQGVRSLAINSVDGQGLNQIITISKEILKEKFDRMKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KRNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + GL+LA++G+IKDS++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQDVAVYALRFL 213
>gi|386714315|ref|YP_006180638.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
gi|384073871|emb|CCG45364.1| ribosomal biogenesis GTPase [Halobacillus halophilus DSM 2266]
Length = 280
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 122/227 (53%), Gaps = 22/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R LK+ D VIE+ D+R PLSS +P LQ L K +++ L KKDL
Sbjct: 3 IQWYPGHMAKAKREASENLKLVDFVIELVDARAPLSSQNPMLQGILGDKPKMMVLMKKDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL--------VELKLKEVISREPTL 136
A+P + +W+ HF IAI A+++ +Q ++ L +E KLK R
Sbjct: 63 ADPKVTKEWLEHFKENGFPSIAIEANNKQDIQAVINLGKSIGNEKIE-KLKAKGVRPRAS 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + ++ A G PGVT+ K+ +
Sbjct: 122 RAMILGIPNVGKSTLINRLANKSI-----------AKTGDKPGVTKKQQWIKVKNE--FD 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P + E G +LA G+IKD ++ E +A Y+L L
Sbjct: 169 LLDTPGILWPKFEEEEVGYRLASIGTIKDQILPTEDVAAYVLDYLQA 215
>gi|451818144|ref|YP_007454345.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784123|gb|AGF55091.1| ribosome biogenesis GTPase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 288
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P ++ L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ N+ +W+ + + + +N ++ + ++ LKE R +
Sbjct: 63 TDSNVTKEWIDYLTNDIVRVLEVNCLKGDGLKNIKPMLLNLLKEKHDRLRAKGMVNIMMR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + + A G PGVT+ K I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNNI-----------AKTGDRPGVTKSKQWIKTG--AGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P D ET L LA +G+IKD ++ E +A L+
Sbjct: 170 LDTPGVLWPKFEDDETALNLAFTGAIKDEIMDIEELALKLV 210
>gi|188588618|ref|YP_001920596.1| ribosomal biogenesis GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251780773|ref|ZP_04823693.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188498899|gb|ACD52035.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|243085088|gb|EES50978.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 285
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P + L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDSLLQGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ W++H + + +N ++ + ++ LKE R T
Sbjct: 63 TEGKVTKDWIKHLTKDEVRVLEVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + ++ A G PGVT+ K + I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNSI-----------AKTGDRPGVTKSKQWIKTS--IGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P D ET L LA +G+IKD ++ E ++ L+ L +
Sbjct: 170 LDTPGVLWPRFEDEETALNLAFTGAIKDEIMDIEELSYKLVERLQS 215
>gi|118443037|ref|YP_878280.1| ribosomal biogenesis GTPase [Clostridium novyi NT]
gi|118133493|gb|ABK60537.1| GTP-binding protein, putative [Clostridium novyi NT]
Length = 280
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 119/224 (53%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK D+VIE+RD+RI SSA+P + + K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRREIKENLKFVDVVIEIRDARIVKSSANPDIDSICNNKSRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA-------HSRSSVQKLLELVELKLKEVISREPTLL 137
A I +W+ + +++N + + ++ +LL+ +LK T
Sbjct: 63 AEEKITRQWIEKLSNDSVKVLSVNCVTGKGLNNIKPTINELLKEKHDRLKSKGMVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS+ IN + K A VG PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKMA-----------KNNTAKVGDRPGVTKNKQWIK--TKMGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPKFEDESVGLDLAFTGAIKDEIMDIETLAFKLIGKL 213
>gi|389573273|ref|ZP_10163348.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
gi|388426970|gb|EIL84780.1| ribosomal biogenesis GTPase [Bacillus sp. M 2-6]
Length = 282
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K +++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+P + +W HF++ +AIN+ + +++ + LKE R +P +
Sbjct: 62 KADPRMTKEWQAHFEAQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + GL+LA++G+IKDS++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDEQVGLRLAVTGAIKDSIINLQDVAVYALRFL 213
>gi|381204932|ref|ZP_09912003.1| GTPase YlqF [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 294
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 23/255 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM A R + ++K D+VIE+RD+R+P++S +P LQ L+ K +I NK
Sbjct: 14 NINWFPGHMRKALRGVGDQIKRVDVVIELRDARLPITSQNPDLQNLLNNKPSLILFNKSG 73
Query: 84 LANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKL----LELVELK---LKEVISREPT 135
LA+ + + KW F + + ++ ++ R + ++ + LV+ + LK R P
Sbjct: 74 LADSSQIKKWESKFKNESTKPFVFVDVKKRKGLSQIIPISIRLVQSRWENLKRRGIRPPV 133
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPS 194
L +MV+G+PNVGKS+LIN AL+R + AT GP PGVT+ +
Sbjct: 134 LRLMVIGIPNVGKSSLIN-----ALAR-------RGATQTGPKPGVTRHPEWIVLGQNAE 181
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ LDTPG+L P I + GL L L GSI+D +VG E ++ YL+ + R +
Sbjct: 182 L--LDTPGILWPKIQNTIDGLNLTLIGSIRDEIVGAESLSNYLIQIGKIRFPEKFSERYS 239
Query: 255 NRTEVSQSETENKHE 269
+ SQS E H+
Sbjct: 240 IKGYESQSSQEILHQ 254
>gi|304316920|ref|YP_003852065.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778422|gb|ADL68981.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 278
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHMA R I+ LKI D+V E+ D+RIP SS +P + + K+R+I LNK DL++
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDIVYELIDARIPKSSRNPLIDELVKNKKRLILLNKADLSD 63
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EPTLLVMV 140
+ W +F + IN+ + SS++++ EL + +I R + L M+
Sbjct: 64 SAVNKMWNEYFKKLGIASLNINSLNSSSIKEIYELTLKECSNIIDRKRQKGIKAKLRAMI 123
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKS LINS+ KTK A G PGVT+ + P +LDT
Sbjct: 124 VGIPNVGKSTLINSL-----------SKTKSAKTGNKPGVTK---AKQWIRTPYFDLLDT 169
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
PG+L P D G+ LAL+ +IKD ++ E +A LL +L
Sbjct: 170 PGILWPKFEDEHVGIMLALTAAIKDELLNHEELAFSLLKIL 210
>gi|403357291|gb|EJY78272.1| GTPase, putative [Oxytricha trifallax]
Length = 307
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 147/279 (52%), Gaps = 23/279 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAK-RRVIALNKKD 83
+NWFPGHM A ++ LK +DL IEVRD+RIP +S + LQ + K +R++ NK D
Sbjct: 17 VNWFPGHMKKAMLGLEDELKKADLFIEVRDARIPYTSYNSELQNYIPQKMKRLVVFNKMD 76
Query: 84 LANPN-----ILNKWVRHFDSCKQ----DYIAINAHSRSSVQKLLELVELKLKEVIS--- 131
LAN I + +H + K + I ++ +VQKLL+ V K+ IS
Sbjct: 77 LANEKKTLSIIKDIQQKHLEQNKNAQPLETIHLSTKKNVNVQKLLQFV----KQNISPQF 132
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
+ +M+ G+PNVGKS +INS+ + + A VG +P +T+ I GFKI
Sbjct: 133 KTVGAWIMIGGIPNVGKSTIINSLRK-KDEDLASRSDRSGAKVGGIPCITKSITGFKIIS 191
Query: 192 RPSIYVLDTPGVLVPSI-PDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW 250
P Y++DTPG++ P + + E GLKL +I+D +V E + Y+L LN G +
Sbjct: 192 DPPTYIMDTPGIIQPKLRENSEDGLKLCACNNIRDGIVELENVCDYILWKLNKEGV---F 248
Query: 251 RHLNNRTEVSQSETENKHEYNLK-DLRPKRRKPPNASDV 288
++N + +N HE L+ R + ++ NA D+
Sbjct: 249 AYVNRFNLAGRRPNDNLHEVILQLQERFQCKERSNAIDI 287
>gi|170064624|ref|XP_001867602.1| mitochondrial GTPase 1 [Culex quinquefasciatus]
gi|167881951|gb|EDS45334.1| mitochondrial GTPase 1 [Culex quinquefasciatus]
Length = 315
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 27/236 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+NWFPGHM + ++ +LK D VIEV D+RIPLS + + +S K V+ LNKKD
Sbjct: 16 LNWFPGHMGKGIKQMQQKLKQVDCVIEVHDARIPLSGRNSEFRYTISGVKPHVLVLNKKD 75
Query: 84 L----ANPNILNKWVRHFDSCKQDYIAINAHSRSS--VQKLLELVELKLKEVI------- 130
+ IL++ +R DS + + N +S ++K++ L + ++I
Sbjct: 76 TIERRSQRAILDR-LRGEDSEARHVLFTNCKDQSCDGIRKVMPLAQ----DLILGSNRFN 130
Query: 131 -SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFK 188
S + +M++GVPNVGKS+LIN + L+R + VG + G+T+ + K
Sbjct: 131 RSDQKEYCIMIIGVPNVGKSSLINVLRNRHLNRKGASQ------VGAVAGITRSVLHKIK 184
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
I P +Y+LDTPG+L P+I D ETGL+LAL ++D +VGEE IA YLL +LN R
Sbjct: 185 ICEDPLVYLLDTPGILKPNIADTETGLRLALVSCLQDHLVGEELIADYLLYLLNKR 240
>gi|229086391|ref|ZP_04218567.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
gi|228696907|gb|EEL49716.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-44]
Length = 287
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVIS---REPTLL 137
A+ + +W+ +F+ I+INA + ++++ LV+ K ++I+ R +
Sbjct: 63 ADDRLTKQWIAYFEEKGHKAISINAQAGQGMKEITAACKVLVKEKFDKMIAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME 214
>gi|308068633|ref|YP_003870238.1| GTPase [Paenibacillus polymyxa E681]
gi|305857912|gb|ADM69700.1| Predicted GTPase [Paenibacillus polymyxa E681]
Length = 299
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 136/255 (53%), Gaps = 27/255 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 15 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 74
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W+ +F + ++A + + ++++ +L LKE I R+ +
Sbjct: 75 LADPVVSQQWIAYFKEQGHVALPVDATTGTGLKEIPIQAKLLLKEKIDRQIRKGMNPRPM 134
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ KI I
Sbjct: 135 RGLIVGIPNVGKSTLINRMAGRNI-----------AATGDRPGVTKAQQWIKIGE---IE 180
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + L +W L R
Sbjct: 181 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYL----VQYYWDALAER 236
Query: 257 TEVSQ--SETENKHE 269
E+ + +TEN E
Sbjct: 237 FELIERPEDTENPDE 251
>gi|150016065|ref|YP_001308319.1| ribosomal biogenesis GTPase [Clostridium beijerinckii NCIMB 8052]
gi|149902530|gb|ABR33363.1| GTP-binding protein, HSR1-related [Clostridium beijerinckii NCIMB
8052]
Length = 287
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 117/226 (51%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P ++ L K R+I LNK DL
Sbjct: 3 INWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIEKLLEGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + +W+ + + +N ++ + + LKE R T+
Sbjct: 63 TDGKVTKEWINYLTKDDVKVLEVNCLKGDGLKNIKPTLLALLKEKHDRLKAKGMVNITMR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS IN + + + A G PGVT+ K I +
Sbjct: 123 VMVVGIPNVGKSTFINKMARNNI-----------AKTGDRPGVTKSKQWIKTGI--GIEM 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P D ET L LA +G+IKD ++ E +A L+ L +
Sbjct: 170 LDTPGVLWPRFEDDETALNLAFTGAIKDEIMDIEELALKLVEKLQS 215
>gi|449504781|ref|XP_002186754.2| PREDICTED: mitochondrial GTPase 1 [Taeniopygia guttata]
Length = 299
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 33/231 (14%)
Query: 18 FTKGGGNI-NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
F GG ++ +WFP HMA R ++ L+ +D ++EV D+RIPLS +P LQ L + V
Sbjct: 21 FEFGGRDVASWFPRHMAKGLRQMRLALRRADCLVEVHDARIPLSGRNPALQEALGVRPHV 80
Query: 77 IALNKKDLAN----PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR 132
+ LNK DLA+ P +L + V D H S +
Sbjct: 81 LVLNKMDLADVRRQPAVLEQVVPWLPGLVAD--GPRYHRAESSEHN-------------- 124
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAH 191
++V+GVPNVGKS+LINS+ ++ L +K + VG PG+T+ + + ++
Sbjct: 125 -----ILVIGVPNVGKSSLINSLRRLHL------KKGRATAVGGEPGITKAVLSRIQVCE 173
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+P +Y++DTPGVL P + D+ETG+KLAL G+I D +VGE+ +A YLL LN
Sbjct: 174 KPLMYLVDTPGVLPPRLGDVETGMKLALCGAIHDHLVGEDVMADYLLYTLN 224
>gi|23273479|gb|AAH35721.1| Mitochondrial GTPase 1 homolog (S. cerevisiae) [Homo sapiens]
gi|158258467|dbj|BAF85204.1| unnamed protein product [Homo sapiens]
Length = 300
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 128/221 (57%), Gaps = 20/221 (9%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 1 MAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQ 60
Query: 92 KWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLLVMVVG 142
K ++H + ++ I N +V++++ +V E+I R +MV+G
Sbjct: 61 KIMQHLEGEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRKENLEYCIMVIG 116
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDTP 201
VPNVGKS+LINS+ + L K K VG PG+T+ + + +++ RP +++LDTP
Sbjct: 117 VPNVGKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTP 170
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
GVL P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 171 GVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 211
>gi|325290407|ref|YP_004266588.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
gi|324965808|gb|ADY56587.1| Ras superfamily GTP-binding protein YlqF [Syntrophobotulus
glycolicus DSM 8271]
Length = 275
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 22/227 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM R + +LK D++IE D+R+PLSS +P L+ L AK +++ LNK D
Sbjct: 2 DIQWFPGHMTKTKRQLLEQLKWVDVIIETGDARLPLSSRNPLLRELLGAKPKLLVLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTL 136
LA+ + KW++ + + +A++A + + ++K++ ++E KL E ++P +
Sbjct: 62 LADEDQTGKWLKKLEQ-EGPVLAVSASTGAGMKKIIPMLEELMAEKWQKLAEKGIKKP-I 119
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PN GKS +IN++ A +R G PGVT+ +I R I
Sbjct: 120 RVMVVGIPNTGKSTIINTLTGRAQAR-----------TGNKPGVTRGSQWLRIHGR--IE 166
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D G KLA SG+++D V E +AQ+L+A L T
Sbjct: 167 LLDTPGMLWPKFDDQIIGRKLAASGAVRDEVFDLEELAQWLIAWLQT 213
>gi|340500070|gb|EGR26973.1| ribosomal biogenesis gtpase, putative [Ichthyophthirius
multifiliis]
Length = 294
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 20/233 (8%)
Query: 20 KGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQ--PQLSAKRRVI 77
K G I+WFPGHM A R ++ + + D IE+RDSRIP+SS + Q K+++I
Sbjct: 10 KLGEKISWFPGHMYRALRLMRDKQENIDYFIEIRDSRIPISSRNQEFDDLCQFYNKKKII 69
Query: 78 ALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-- 135
NK DL+N ++N V + D +++A +++ + E + LK + + T
Sbjct: 70 VFNKYDLSNQRVINNLVEKYTKVGIDCFSVSALKGTNMPNVNEQI---LKRIQGKYSTVG 126
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +M+ G+PNVGKS +IN + R +++K+ + P T+ I G KI+ P I
Sbjct: 127 IWLMICGMPNVGKSTIINQL------RTLIRQKSINKSEAT-PCTTKSIVGVKISQDPLI 179
Query: 196 YVLDTPGVLVPSIPDIET------GLKLALSGSIKDSVVGEERIAQYLLAVLN 242
Y++DTPGV++P+I D E LKL+L G IKD + G+E I YL+ VLN
Sbjct: 180 YLVDTPGVMIPNIQDDEVFTYKLKSLKLSLVGCIKDVIPGKEIILDYLVYVLN 232
>gi|386040552|ref|YP_005959506.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
gi|343096590|emb|CCC84799.1| GTP-binding protein engA [Paenibacillus polymyxa M1]
Length = 286
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 135/252 (53%), Gaps = 27/252 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W+ +F ++A + + ++++ +L LKE I R+ + +
Sbjct: 62 LADPVVSQQWIAYFKEQGHVAFPVDATTGTGLKEIPVQAKLLLKEKIDRQISKGMNPRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K I
Sbjct: 122 RALIVGIPNVGKSTLINRMAGRNI-----------AATGDRPGVTKAQQWIKTGE---IE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + L +W + R
Sbjct: 168 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYL----VQYYWDAMAER 223
Query: 257 TEVSQ--SETEN 266
E+++ +TEN
Sbjct: 224 FELTERPEDTEN 235
>gi|300854481|ref|YP_003779465.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434596|gb|ADK14363.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 284
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INWFPGHMA R +K LK+ D VIE+RD+RI SS +P + +K R+I LNK D
Sbjct: 2 DINWFPGHMAKTKREMKQNLKLVDAVIEIRDARIIRSSKNPEVDDICGSKPRIILLNKND 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
L+ ++ KW+++ + +A+N+++ ++ + L++ LKE R T
Sbjct: 62 LSEDSVTKKWIKYLSNKNIKALAVNSNTGQGIKSIKPLLDELLKEKHDRMNNKGILGITD 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PNVGKS+ IN + + ++ A G PGVT+ K + I
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSI-----------AKTGDKPGVTRSKQWIKT--KLGIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++DTPG+L P + ET L LA +G+IKD ++ E +A LL L R
Sbjct: 169 LMDTPGILWPKLESQETQLHLAFTGAIKDEIMDIEELALSLLKDLCER 216
>gi|418962640|ref|ZP_13514494.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383345175|gb|EID23308.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 283
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKG 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W R+F+S +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADSDLTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K ++R ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK-SNR-NL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|390934868|ref|YP_006392373.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570369|gb|AFK86774.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 278
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 20/221 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHMA R I+ LKI D+V E+ D+RIP SS +P + + K+R+I LNK DLA+
Sbjct: 4 WYPGHMAKTKRLIEENLKIVDVVYELLDARIPKSSRNPLIDDLVKNKKRIILLNKSDLAD 63
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EPTLLVMV 140
+ W +F+ + IN+ +Q + EL + ++I + + L M+
Sbjct: 64 LEVNKMWNDYFNLKGHVSLNINSLDSRCIQSIYELTLKECSDIIDKKRQKGIKAKLRAMI 123
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKS LINS+ KTK A G PGVT+ K P +LDT
Sbjct: 124 VGIPNVGKSTLINSL-----------TKTKNAKTGNKPGVTKSKQWIKT---PYFDLLDT 169
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
PG+L P D G+ LAL+ +IKD ++ E +A LL +L
Sbjct: 170 PGILWPKFEDEHVGIMLALTSAIKDELLNHEELAYSLLDIL 210
>gi|15615039|ref|NP_243342.1| hypothetical protein BH2476 [Bacillus halodurans C-125]
gi|4514314|dbj|BAA75361.1| YlqF [Bacillus halodurans]
gi|10175096|dbj|BAB06195.1| BH2476 [Bacillus halodurans C-125]
Length = 284
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDVVIELLDARVPLSSRNPMMDEIVAHKPRLVLLNKDD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P+ +W R F+ + INA + V ++ + + +I ++ +
Sbjct: 62 LADPSKTKEWTRFFEEGGATVLPINAQTGQGVSRISPACQTLAQALIEKQRAKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN ++A R A VG PG+T+ K+ +
Sbjct: 122 RAMILGIPNVGKSTLIN---RLASKRI--------AKVGDRPGITKQQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D TG +LA +G+IKD ++ + +A ++L
Sbjct: 169 LLDTPGILWPKFDDQATGFRLAATGAIKDELLDFQDVALFVL 210
>gi|417643565|ref|ZP_12293607.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri VCU121]
gi|445059836|ref|YP_007385240.1| GTPase YlqF [Staphylococcus warneri SG1]
gi|330685672|gb|EGG97313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU121]
gi|443425893|gb|AGC90796.1| GTPase YlqF [Staphylococcus warneri SG1]
Length = 291
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N L KW ++F+ +A++A +++ + + KE RE +
Sbjct: 63 TNLKELEKWEQYFEEKGYYPVAVDAKHGKNLKDVEKAAIQATKEKFDREKAKGLRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRSI-----------AQTGNKPGVTKQQQWIKVG--TSLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + + +H N
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLQFMIEKDLEGLKKHYN 226
>gi|423068503|ref|ZP_17057291.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
gi|355366758|gb|EHG14475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0395]
Length = 283
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ ++ +W R+F+S +AIN+ +S+V+K+ E + +KE I+R+ TL
Sbjct: 64 ADSDVTKEWRRYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|291563276|emb|CBL42092.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SS3/4]
Length = 287
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R PL+S +P + + K RVI LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDVKLVDLVIELVDARAPLASRNPDIDSLAAGKGRVILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W+ +F+S + I+A +++++++L L++ KE I R+ +
Sbjct: 62 LASEKANAAWITYFESQGFQVMKIDARAKATLKQLNALIQEACKEKIERDRRRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ + +
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAA-----------AKTGNKPGVTKGNQWIRLNKQ--VE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYL 237
+LDTPG+L P D GL LA GSI D ++ ++ +A L
Sbjct: 169 LLDTPGILWPKFEDQRVGLLLAFLGSINDEILEKDELASEL 209
>gi|408356881|ref|YP_006845412.1| GTP-binding protein [Amphibacillus xylanus NBRC 15112]
gi|407727652|dbj|BAM47650.1| putative GTP-binding protein [Amphibacillus xylanus NBRC 15112]
Length = 283
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ +LK+ D VIE+ D+R PL+S +P LQ L K ++ L KKD
Sbjct: 3 TIQWFPGHMAKARREVQEKLKLVDFVIELVDARAPLASQNPMLQEILQQKPKMQVLMKKD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLV----- 138
LA+P + N W+ + + +A++ +R +QK++E + E + R V
Sbjct: 63 LADPELTNIWLEKLREDEIEAVAVDVQNRQDIQKVIETAKKMTAEKMERLKKKGVRPRAG 122
Query: 139 --MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 123 RAMIIGIPNVGKSTLINRLAN-----------KKIAKTGDRPGITTAQQWIKV--KKDFE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D G +LA G+IKD ++ E IA++ L +
Sbjct: 170 LLDTPGILWPKFEDQNVGYQLAAIGTIKDQILSIEDIARFTLKFIQ 215
>gi|310641521|ref|YP_003946279.1| GTPase [Paenibacillus polymyxa SC2]
gi|309246471|gb|ADO56038.1| GTPase family protein [Paenibacillus polymyxa SC2]
Length = 289
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 135/252 (53%), Gaps = 27/252 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 5 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W+ +F ++A + + ++++ +L LKE I R+ + +
Sbjct: 65 LADPVVSQQWIAYFKEQGHVAFPVDATTGTGLKEIPVQAKLLLKEKIDRQISKGMNPRPI 124
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K I
Sbjct: 125 RALIVGIPNVGKSTLINRMAGRNI-----------AATGDRPGVTKAQQWIKTGE---IE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + L +W + R
Sbjct: 171 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYL----VQYYWDAMAER 226
Query: 257 TEVSQ--SETEN 266
E+++ +TEN
Sbjct: 227 FELTERPEDTEN 238
>gi|373857305|ref|ZP_09600047.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
gi|372452955|gb|EHP26424.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus sp. 1NLA3E]
Length = 297
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+R+P SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELVDARVPFSSRNPMIDEIIQHKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
+A+ + +W+R+F +AIN+ +++++ +L+ K ++ SR P +
Sbjct: 62 MADREVTKQWIRYFQDNGVAALAINSQEGIGMKEIVIEAKKLLSEKFDKMKSRGINPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNAGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GLKLA++G+IKD+++ IA Y L L
Sbjct: 169 LLDTPGILWPKFDDQEVGLKLAVTGAIKDTLLNMYEIAAYALQYL 213
>gi|229019033|ref|ZP_04175874.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|229025279|ref|ZP_04181699.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|423389855|ref|ZP_17367081.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
gi|423418255|ref|ZP_17395344.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|228736032|gb|EEL86607.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1272]
gi|228742273|gb|EEL92432.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH1273]
gi|401106528|gb|EJQ14489.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-1]
gi|401641946|gb|EJS59663.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-3]
Length = 296
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHKAISINAQAGQGMKEIAAACKILVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|42782930|ref|NP_980177.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 10987]
gi|402556041|ref|YP_006597312.1| GTPase YlqF [Bacillus cereus FRI-35]
gi|42738857|gb|AAS42785.1| GTPase family protein [Bacillus cereus ATCC 10987]
gi|401797251|gb|AFQ11110.1| GTPase YlqF [Bacillus cereus FRI-35]
Length = 296
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 133/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H +R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPDRL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|157692284|ref|YP_001486746.1| ribosomal biogenesis GTPase [Bacillus pumilus SAFR-032]
gi|338819265|sp|A8FD69.1|RBGA_BACP2 RecName: Full=Ribosome biogenesis GTPase A
gi|157681042|gb|ABV62186.1| GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 282
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K +++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+P + +W HF+ +AIN+ + +++ + LKE R +P +
Sbjct: 62 KADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + GL+LA++G+IKDS++ + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDEKVGLRLAVTGAIKDSIINLQDVAVYGLRFL 213
>gi|385799834|ref|YP_005836238.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
gi|309389198|gb|ADO77078.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
praevalens DSM 2228]
Length = 290
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 21/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R +K LK+ D+VIEV D+RIP+SS +P L+ +S + +V LNKKDL
Sbjct: 2 IQWYPGHMAKAKRILKDDLKMVDIVIEVADARIPVSSQNPDLKKLISKQTKVTVLNKKDL 61
Query: 85 ANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------REP-TL 136
A+PN KW+++F + + + IN+ + V L ++ ++ + R P L
Sbjct: 62 ADPNYNQKWLQYFSEKNSEAAVLINSLTGEGVSDLKSVLNNTYDQIAAKLAKKGRNPRRL 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKSALIN + +K T+G PGVT+ + + I
Sbjct: 122 RAMIIGIPNVGKSALINLLAG-----------SKITTIGDKPGVTRGRQWVNVGQK--IR 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + KLAL+G+I + + E A L+ +
Sbjct: 169 LLDTPGILWPKFSDEDKAYKLALTGAISNDIYDAELAAYKLIKFI 213
>gi|357616532|gb|EHJ70245.1| mitochondrial GTPase 1 [Danaus plexippus]
Length = 335
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 129/233 (55%), Gaps = 16/233 (6%)
Query: 21 GGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS-AKRRVIAL 79
G + WFPGHM + ++ +LK D VIEV D+RIP S +P ++ AK ++
Sbjct: 20 GKDLLRWFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFSGRNPIFTSTITGAKPHILVF 79
Query: 80 NKKDLANPNILNKWVRHF--DSCKQDYIAINAHSRS-----SVQKLL-ELVELKLKEVIS 131
NKKDL P +L K + Q+ + N +S S++ L+ +L++ + S
Sbjct: 80 NKKDLTIPKLLPKVKDQLREEEGIQNVVFTNCKDQSCRGLKSLRPLIVDLIKNSNRYNRS 139
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIA 190
E VM++GVPNVGKS+LIN + R VG + GVT+ + KI
Sbjct: 140 EEIDYNVMIIGVPNVGKSSLINML------RSTYMHVRHALPVGAVAGVTRSLMTKMKIN 193
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ P I++ DTPG+L PS+ D+E GLKLAL S++D +VGEE IA YLL LN+
Sbjct: 194 NNPKIFMFDTPGILEPSVKDVEMGLKLALCASLQDHLVGEEAIADYLLYWLNS 246
>gi|218283551|ref|ZP_03489541.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
gi|218215819|gb|EEC89357.1| hypothetical protein EUBIFOR_02131 [Eubacterium biforme DSM 3989]
Length = 281
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 122/227 (53%), Gaps = 22/227 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
N+ WFPGHM A R ++ LK D VIE+RD+R+P +S +P L + K R+I L+KK
Sbjct: 2 ANVQWFPGHMTKAKRQMEENLKKVDFVIEIRDARMPDASKNPMLDQLIQNKPRLILLSKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAIN-AHS-------RSSVQKLLELVELKLKEVISREP 134
D A+ + +WV ++ Q +A++ H ++S + + L+E K K +
Sbjct: 62 DKADKELTKQWVNALETENQKVLALDFIHENFSKQLIKASNELCINLIE-KQKRRGMKPR 120
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
L MV G+PNVGKS IN+ K K A G PGVT+ + K+ +
Sbjct: 121 ALRAMVCGIPNVGKSTFINTFA-----------KRKAAQTGDRPGVTKSLQWIKVGQ--T 167
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D + GLKLAL GSIKD VV + +A + L
Sbjct: 168 LELLDTPGVLWPKFEDQQVGLKLALLGSIKDQVVNMDDLALFACEYL 214
>gi|49478407|ref|YP_037899.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329963|gb|AAT60609.1| conserved hypothetical protein, GTPase family [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 296
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 133/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R ++
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRSIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|390454093|ref|ZP_10239621.1| GTPase [Paenibacillus peoriae KCTC 3763]
Length = 286
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 27/252 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W+ +F ++A + + ++++ +L LKE I R+ + +
Sbjct: 62 LADPVVSQQWIAYFKEQGHIAFQVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K I
Sbjct: 122 RALIVGIPNVGKSTLINRMAGRNI-----------AATGDRPGVTKAQQWIKTGE---IE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + +W + R
Sbjct: 168 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYF----VQYYWDAMAER 223
Query: 257 TEVSQ--SETEN 266
E+++ +TEN
Sbjct: 224 FELTERPEDTEN 235
>gi|375308199|ref|ZP_09773486.1| gtpase family protein [Paenibacillus sp. Aloe-11]
gi|375080530|gb|EHS58751.1| gtpase family protein [Paenibacillus sp. Aloe-11]
Length = 288
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 27/252 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DLVIE+ D+R+PLSS +P + L K R+I LNK D
Sbjct: 4 TIQWFPGHMTRARRQIEAKLKLIDLVIELIDARLPLSSRNPMIDDILQGKPRMIILNKAD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W+ +F ++A + + ++++ +L LKE I R+ + +
Sbjct: 64 LADPVVSQQWIAYFKEQGHVAFQVDATTGTGMKEIPVQAKLLLKEKIDRQISKGMNPRPI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K I
Sbjct: 124 RALIVGIPNVGKSTLINRMAGRNI-----------AATGDRPGVTKAQQWIKTGE---IE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+IK+ ++ E IA + +W + R
Sbjct: 170 LLDTPGILWPKFEDQNVGYRLAVTGAIKEEILNVEDIAFFATKYF----VQYYWDAMAER 225
Query: 257 TEVSQ--SETEN 266
E+++ +TEN
Sbjct: 226 FELTERPEDTEN 237
>gi|302386483|ref|YP_003822305.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
gi|302197111|gb|ADL04682.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
saccharolyticum WM1]
Length = 280
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DL+IE+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLIIELVDARVPLSSRNPDIDELGAGKARIVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + W +F++ + +N+ + + ++++ +V+ KE I R+ +
Sbjct: 62 LADERCNSVWQSYFETQGCHVVKVNSRNGAGLKQINGVVQEACKEKIERDRRRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ S+
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAC-----------AKTGNRPGVTKGNQWIRLNK--SLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D + G++LAL GS+ D ++ ++ +A L+ L +
Sbjct: 169 LLDTPGILWPRFEDQQVGIRLALIGSVNDEILNKDELAMELIRFLTKK 216
>gi|409387361|ref|ZP_11239591.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
gi|399205462|emb|CCK20506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Lactococcus raffinolactis 4877]
Length = 291
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK DLV+E+ D+R+PLSS +P L + K R++ +NKKDL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDLVMELVDARLPLSSRNPMLDKIIGTKPRLVIINKKDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPTLL 137
+ + KWV +F++ + INA + +V+KL E++ KLK R +
Sbjct: 64 GDDLEIQKWVHYFEAQGILAVKINAKEQQTVKKLTKAAKEVLAEKLKRASERGIQNKAIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS L+N + K A G PGVT+ K + +
Sbjct: 124 TMIIGIPNVGKSTLMNRLA-----------GKKIAITGNKPGVTKGQQWLKTNE--ELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P D GLKLAL+G+IKD ++ ++ I +
Sbjct: 171 LDTPGILWPKFEDQRVGLKLALTGAIKDDLIPKDEITIF 209
>gi|160933522|ref|ZP_02080910.1| hypothetical protein CLOLEP_02368 [Clostridium leptum DSM 753]
gi|156867399|gb|EDO60771.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium leptum
DSM 753]
Length = 289
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 28/229 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM R I+ LK+ D V E+ D+RIP+SS +P L + K R+I +NK D
Sbjct: 6 TIQWFPGHMTKTRRKIQASLKLVDAVAEIIDARIPVSSRNPELHKIIENKPRIILMNKCD 65
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSS---------VQKLLE--LVELKLKEVISR 132
+A+P+ +WV + K+ +AI +S V++LL+ +++ + K +++R
Sbjct: 66 MADPSQTARWVSCYQ--KEGVLAIPVDCKSGRGLNQFIPKVRELLKDRIIQWEQKGMVNR 123
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
T+ VM+VG+PNVGKS+ IN + K RA V PGVT+ F I
Sbjct: 124 --TIRVMIVGIPNVGKSSFINRMA-----------KQNRAKVEDRPGVTRGNQWFTIGK- 169
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D G KLA +G++KD +V E++A LL VL
Sbjct: 170 -AFDLLDTPGVLWPKFDDPNVGEKLAFTGAVKDQIVDTEQLASRLLEVL 217
>gi|322391938|ref|ZP_08065402.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
gi|321145164|gb|EFX40561.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus peroris
ATCC 700780]
Length = 283
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +HF+S +AIN+ + +V+ + + + + E I+R+ T
Sbjct: 62 DLADPVLTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMVEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ FK +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWFKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|228992566|ref|ZP_04152493.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
gi|228998614|ref|ZP_04158201.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|229006114|ref|ZP_04163802.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228755190|gb|EEM04547.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock1-4]
gi|228761082|gb|EEM10041.1| Ras superfamily GTP-binding protein YlqF [Bacillus mycoides
Rock3-17]
gi|228767200|gb|EEM15836.1| Ras superfamily GTP-binding protein YlqF [Bacillus pseudomycoides
DSM 12442]
Length = 290
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F+ I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFEEKGHKAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME 214
>gi|402300897|ref|ZP_10820338.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
gi|401723983|gb|EJS97390.1| hypothetical protein BalcAV_17028 [Bacillus alcalophilus ATCC
27647]
Length = 287
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+RIPLSS +P + + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEQLKMIDVVIELVDARIPLSSRNPMIDKLVEHKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTL 136
LA+ + KW +F+ + IN+ + QKL + K+K + +
Sbjct: 62 LADESRTAKWKSYFEKLGYSVLVINSQNGKGTEKISGECQKLATPMLEKMKAKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + A VG PGVT+ K+ + +
Sbjct: 122 RAMILGIPNVGKSTLINRLAA-----------KRTAQVGDRPGVTKRQQWIKVGKQ--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW-RHLNN 255
+LDTPG+L P D +TG +LA +G+IKD ++ + IA + + L H+ + L
Sbjct: 169 LLDTPGILWPKFEDQQTGFRLAATGAIKDEILDFQDIALFAVTYLRE-----HYPKRLQE 223
Query: 256 RTEVSQSETEN 266
R ++ + T+N
Sbjct: 224 RYKLDELSTDN 234
>gi|336395589|ref|ZP_08576988.1| putative GTP-binding protein [Lactobacillus farciminis KCTC 3681]
Length = 284
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHM A ++ RLK+ D+V+E+ D+R+P SS +P L+ + K+ +I LNK DL
Sbjct: 3 LQWYPGHMNKAKNQVQDRLKLVDIVLEIVDARLPFSSRNPVLEQIIDQKKHIIILNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P I W +F+ + I I+A + K+ ++ +L E I R +
Sbjct: 63 ADPKITADWKLNFEQEGTNSIEIDAKHTKGMNKIKSMIRSELSEKIQRYENNGVQNYRIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + + A G PGVT++ K I +
Sbjct: 123 AMCIGIPNVGKSTILNRLVGKNV-----------AVTGNKPGVTKNQNWLKT--NIGIDL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P I D + G+KLALSG+IKD + + +A Y L + T
Sbjct: 170 LDTPGILWPKIDDPKVGMKLALSGAIKDKIYAPDDVAIYALNFMET 215
>gi|311030148|ref|ZP_07708238.1| ribosomal biogenesis GTPase [Bacillus sp. m3-13]
Length = 285
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 22/229 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P + +S K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPVSSRNPMIDEIISNKPRIILLNKAD 61
Query: 84 LANPNILNKWVRHFD--SCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REP 134
+A+ + +W+ +F+ IAI++ + +Q++ L + LKE R
Sbjct: 62 MADAKVTREWLDYFNLPGSSTKAIAIDSQTGKGIQQIATLSKELLKEKFDKMQSRGIRPR 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ ++VG+PNVGKS LIN + K A G PGVT+ K+
Sbjct: 122 AIRALIVGIPNVGKSTLINRLA-----------KKNIAQTGDRPGVTKAQQWVKVGK--E 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ +LDTPG+L P D E G +LA +G+IKD+++ + IA + L L
Sbjct: 169 LELLDTPGILWPKFEDQEVGYRLATTGAIKDTIINLQDIAVFALRFLTA 217
>gi|217961258|ref|YP_002339826.1| ribosomal biogenesis GTPase [Bacillus cereus AH187]
gi|229140481|ref|ZP_04269036.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|229157414|ref|ZP_04285492.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|229197948|ref|ZP_04324663.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|375285761|ref|YP_005106200.1| GTPase family protein [Bacillus cereus NC7401]
gi|384181651|ref|YP_005567413.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|423353540|ref|ZP_17331167.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|423374365|ref|ZP_17351703.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|423567267|ref|ZP_17543514.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|423574556|ref|ZP_17550675.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|423604535|ref|ZP_17580428.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
gi|217065992|gb|ACJ80242.1| GTPase family protein [Bacillus cereus AH187]
gi|228585527|gb|EEK43630.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1293]
gi|228626141|gb|EEK82890.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
4342]
gi|228643042|gb|EEK99318.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST26]
gi|324327735|gb|ADY22995.1| GTPase YlqF [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354288|dbj|BAL19460.1| GTPase family protein [Bacillus cereus NC7401]
gi|401089353|gb|EJP97524.1| ribosome biogenesis GTPase A [Bacillus cereus IS075]
gi|401094277|gb|EJQ02359.1| ribosome biogenesis GTPase A [Bacillus cereus AND1407]
gi|401212081|gb|EJR18827.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-D12]
gi|401214355|gb|EJR21085.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A12]
gi|401245155|gb|EJR51513.1| ribosome biogenesis GTPase A [Bacillus cereus VD102]
Length = 296
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|392940892|ref|ZP_10306536.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
gi|392292642|gb|EIW01086.1| LOW QUALITY PROTEIN: ribosome biogenesis GTP-binding protein YlqF
[Thermoanaerobacter siderophilus SR4]
Length = 277
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKIKKRIILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + + +N+ + ++++ E + ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 MIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRALHWIK---TPYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|239636277|ref|ZP_04677279.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
gi|239597632|gb|EEQ80127.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
warneri L37603]
Length = 291
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 122/227 (53%), Gaps = 20/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDI 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N L KW + F+ +A++A +++ + + KE RE +
Sbjct: 63 TNLKELEKWEQFFEEKGYYPVAVDAKHGKNLKDVEKAAIQATKEKFEREKAKGLRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRSV-----------AQTGNKPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + R
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLQFMIER 216
>gi|326389497|ref|ZP_08211064.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
gi|325994502|gb|EGD52927.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
ethanolicus JW 200]
Length = 277
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + + +N+ + ++++ E + ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 MIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRALHWIKT---PYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|228986981|ref|ZP_04147107.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772759|gb|EEM21199.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 296
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|222097283|ref|YP_002531340.1| ribosomal biogenesis gtpase [Bacillus cereus Q1]
gi|221241341|gb|ACM14051.1| GTPase family protein [Bacillus cereus Q1]
Length = 296
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|423582048|ref|ZP_17558159.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
gi|401212927|gb|EJR19668.1| ribosome biogenesis GTPase A [Bacillus cereus VD014]
Length = 296
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGIKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|205373354|ref|ZP_03226158.1| hypothetical protein Bcoam_08560 [Bacillus coahuilensis m4-4]
Length = 285
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIP+SS +P + + K R++ LNK+D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELVDARIPISSRNPMMDQIVQQKPRLVLLNKED 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
+A+P + W+ +F I++NA + + +++ + LK R +
Sbjct: 62 MADPELTKAWIAYFQERGIKAISLNAQEGNGLHAIVKAAKEILKPKWDRMKAKGMNPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIIGIPNVGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA++G+IKD+++ + I+ Y L L
Sbjct: 169 LLDTPGILWPKFEDQEVGYKLAVTGAIKDTIINLQDISVYALRYL 213
>gi|177656002|ref|ZP_02937129.1| GTPase family protein [Bacillus anthracis str. A0174]
gi|254735876|ref|ZP_05193582.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|172079901|gb|EDT65009.1| GTPase family protein [Bacillus anthracis str. A0174]
Length = 296
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADARLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|337736979|ref|YP_004636426.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
gi|384458486|ref|YP_005670906.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|325509175|gb|ADZ20811.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum EA 2018]
gi|336292584|gb|AEI33718.1| ribosomal biogenesis GTPase [Clostridium acetobutylicum DSM 1731]
Length = 283
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R I+ LK+ D VIE+RD+RI SS++P + K R+I LNK DL
Sbjct: 6 INWFPGHMAKTRREIRENLKLVDAVIEIRDARIVYSSSNPDINSICKDKPRIILLNKFDL 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA---HSRSSVQKLL-ELVELKLKEVISR---EPTLL 137
A +I + WV+ S I +NA +S++ L EL++ KL + ++ +
Sbjct: 66 AEKSITDNWVKALSSESIRAIPVNALEGRGLNSIKPALNELLKPKLDNMAAKGIQNYIIR 125
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS+ IN + K K A VG PGVT+ K I +
Sbjct: 126 VMVVGIPNVGKSSFINKMA-----------KNKVAKVGNKPGVTKSKQWIK--TNIGIEL 172
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D + GL LA +G+IKD ++ E +A L+ L
Sbjct: 173 MDTPGVLWPKFQDQKVGLNLAFTGAIKDEIMDIEELALKLVQFL 216
>gi|30263841|ref|NP_846218.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Ames]
gi|47529266|ref|YP_020615.1| ribosomal biogenesis GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186688|ref|YP_029940.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Sterne]
gi|65321165|ref|ZP_00394124.1| COG1161: Predicted GTPases [Bacillus anthracis str. A2012]
gi|170689661|ref|ZP_02880841.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|170709354|ref|ZP_02899768.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|227813254|ref|YP_002813263.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CDC 684]
gi|229600440|ref|YP_002868075.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A0248]
gi|254683455|ref|ZP_05147315.1| ribosomal biogenesis GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254751310|ref|ZP_05203347.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Vollum]
gi|254759310|ref|ZP_05211335.1| ribosomal biogenesis GTPase [Bacillus anthracis str. Australia 94]
gi|386737660|ref|YP_006210841.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|421507377|ref|ZP_15954297.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|421639593|ref|ZP_16080184.1| GTPase YlqF [Bacillus anthracis str. BF1]
gi|30258485|gb|AAP27704.1| GTPase family protein [Bacillus anthracis str. Ames]
gi|47504414|gb|AAT33090.1| GTPase family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180615|gb|AAT55991.1| GTPase family protein [Bacillus anthracis str. Sterne]
gi|170125728|gb|EDS94641.1| GTPase family protein [Bacillus anthracis str. A0389]
gi|170666385|gb|EDT17168.1| GTPase family protein [Bacillus anthracis str. A0465]
gi|227002777|gb|ACP12520.1| GTPase family protein [Bacillus anthracis str. CDC 684]
gi|229264848|gb|ACQ46485.1| GTPase family protein [Bacillus anthracis str. A0248]
gi|384387512|gb|AFH85173.1| Ras superfamily GTP-binding protein YlqF [Bacillus anthracis str.
H9401]
gi|401822511|gb|EJT21661.1| GTPase YlqF [Bacillus anthracis str. UR-1]
gi|403393258|gb|EJY90503.1| GTPase YlqF [Bacillus anthracis str. BF1]
Length = 296
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|52141650|ref|YP_085179.1| ribosomal biogenesis GTPase [Bacillus cereus E33L]
gi|218904967|ref|YP_002452801.1| ribosomal biogenesis GTPase [Bacillus cereus AH820]
gi|225865819|ref|YP_002751197.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228916475|ref|ZP_04080041.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928886|ref|ZP_04091918.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935152|ref|ZP_04097979.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947557|ref|ZP_04109847.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229092880|ref|ZP_04224014.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|229123352|ref|ZP_04252556.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|229186078|ref|ZP_04313247.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|254721976|ref|ZP_05183765.1| ribosomal biogenesis GTPase [Bacillus anthracis str. A1055]
gi|301055328|ref|YP_003793539.1| GTP-binding protein HSR1-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267734|ref|YP_005120446.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|423550413|ref|ZP_17526740.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
gi|51975119|gb|AAU16669.1| conserved hypothetical protein; GTPase family [Bacillus cereus
E33L]
gi|218539759|gb|ACK92157.1| GTPase family protein [Bacillus cereus AH820]
gi|225788163|gb|ACO28380.1| GTPase family protein [Bacillus cereus 03BB102]
gi|228597254|gb|EEK54905.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus BGSC 6E1]
gi|228660128|gb|EEL15764.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 95/8201]
gi|228690502|gb|EEL44285.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-42]
gi|228812077|gb|EEM58408.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824517|gb|EEM70322.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830693|gb|EEM76298.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843054|gb|EEM88136.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377497|gb|ADK06401.1| GTP-binding protein HSR1-related protein [Bacillus cereus biovar
anthracis str. CI]
gi|364513534|gb|AEW56933.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus cereus
F837/76]
gi|401190029|gb|EJQ97079.1| ribosome biogenesis GTPase A [Bacillus cereus ISP3191]
Length = 296
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|404418476|ref|ZP_11000243.1| GTPase YlqF [Staphylococcus arlettae CVD059]
gi|403489069|gb|EJY94647.1| GTPase YlqF [Staphylococcus arlettae CVD059]
Length = 290
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 23/301 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RVI LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVTEQLKKVDVVFELVDARIPYSSRNPMIDEVIQQKPRVIILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
AN L KW +F + +A++A ++++ + ++ ++E +
Sbjct: 63 ANLKELEKWQSYFSAQGNFPVAVDAKHGKGLKQVEQAAIQATEDKFAKEREKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + A+ A G PGVT+ KI S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRAI-----------AKTGNTPGVTKQQQWIKIGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D G KL+++G+IKDS+V + +A Y L L +H N
Sbjct: 170 LDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLDEVAIYGLEFLKQHDYEGLKKHYNIEV 229
Query: 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDEN 317
+ + EN ++ R + N D + +L+ R + FD E E
Sbjct: 230 AI---DAENLEWFDAIGRRRGLLQRGNEVDYEAVIELIINEIRNAKIGTYTFDVFKEIER 286
Query: 318 D 318
D
Sbjct: 287 D 287
>gi|319939094|ref|ZP_08013458.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319812144|gb|EFW08410.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 283
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKG 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W ++F+S +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADSDLTKEWRKYFESQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K ++R ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK-SNR-NL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|373494759|ref|ZP_09585358.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
gi|371967803|gb|EHO85271.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium infirmum
F0142]
Length = 280
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 18/222 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I LK+ D+VIEV D+RIP+SS +P + + K+R+I LNK D
Sbjct: 5 NINWYPGHMKKTRELITSNLKLVDIVIEVIDARIPVSSRNPVIDELTAGKQRIIILNKSD 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS----REPTLLVM 139
LA+ N +W+ + + +++ +++LL L+ K+++ I+ R+ L +M
Sbjct: 65 LADGNETKRWMEKLGTDGIKVMTLDSMHGVGIKELLNLMT-KIQDDINKDRVRKKNLRLM 123
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
+VGVPNVGKS+LIN + K A G PGVT+ +++ + +LD
Sbjct: 124 IVGVPNVGKSSLINRLTG-----------KKSAKTGDKPGVTKGKQWLTLSN--GMQLLD 170
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P D G+KLA GSIKD ++ E +A L+ +L
Sbjct: 171 TPGILWPKFEDESVGIKLAFCGSIKDEILDLETLALRLIELL 212
>gi|345017764|ref|YP_004820117.1| hypothetical protein Thewi_1411 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033107|gb|AEM78833.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1411
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 277
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + + +N+ + ++++ E + ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKEKGIEAVKVNSITGFGLKEINEATQRVCQDILDKKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 MIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRALHWIKT---PYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGVMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|168188038|ref|ZP_02622673.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
gi|169294120|gb|EDS76253.1| GTP-binding protein [Clostridium botulinum C str. Eklund]
Length = 280
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK D+VIE+RD+RI SSA+P + + K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRREIKENLKFVDVVIEIRDARIVKSSANPDIDSICNNKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ I KW+ + +++N + + + + LKE R T
Sbjct: 63 SEEKITRKWIDKLSNDSVKVLSVNCVTGKGLNNIKPTINELLKEKHDRLKAKGLVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS+ IN + K A VG PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKMA-----------KNNTAKVGDRPGVTKNKQWIK--TKMGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPKFEDESVGLDLAFTGAIKDEIMDIETLAFKLIGKL 213
>gi|350402770|ref|XP_003486596.1| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Bombus impatiens]
Length = 322
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 165/354 (46%), Gaps = 71/354 (20%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM + ++ +LK D +IEV D+RIP+S + L+ K + LNK D
Sbjct: 23 LRWFPGHMGKGLKNMQKQLKNVDCIIEVHDARIPVSGHYADYSNTLTGLKPHIFVLNKMD 82
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPTL 136
LA+ N V + + I + + EL+ L K + + E +
Sbjct: 83 LADMKFKNSIVENLNQKGLSNILFTSFRNVKCEGAKELLPLAQKLIKESNRHNRAHESSF 142
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSI 195
+M++GVPNVGKS+LIN + R + K+ VG + G+T+ ++ K++ +P I
Sbjct: 143 QIMIIGVPNVGKSSLINRL------RNNILRKSSAVPVGGIAGITRSVSTRVKVSEKPDI 196
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
YVLDTPG+L P + ++ TGLKLAL G ++D ++G E +A +L L W +
Sbjct: 197 YVLDTPGILTPKVDNMHTGLKLALVGCMQDHLIGPEILADFL----------LFWLNKQK 246
Query: 256 RTE-VSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTG-VQRALHVSLSEFDGNV 313
R E V + E H+ +++YI + +++ L + +DG +
Sbjct: 247 RFEYVEKLELREPHD-----------------NISYILTYIAAKLKKTLRI--KNYDGKI 287
Query: 314 EDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDD 367
+ DL ++ FL+LFR G+LG + LD+
Sbjct: 288 IIKPDLR-------------------------FAAEHFLSLFRKGELGYYCLDE 316
>gi|255994296|ref|ZP_05427431.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
gi|255993009|gb|EEU03098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium saphenum
ATCC 49989]
Length = 284
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 20/222 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM AT I+ LK+ D+VIE+ D+R+PLSS +P L L RR+I LNK DL
Sbjct: 4 INWYPGHMKKATDTIREDLKVIDVVIEILDARVPLSSKNPVLDSLLRKHRRIIILNKYDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL---LELVELKLKEVISREPTLLVMVV 141
A + KW HF + D +N+ + +++L + ++ +L E S + +MVV
Sbjct: 64 AGDSGNEKWKGHFKTQGADAFLVNSITGFGIKELERHIMKIKSELDEKNSFNKPMRLMVV 123
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATV-GPLPGVTQDIAGFKIAHRP-SIYVLD 199
G+PNVGKS+ IN + + KR+TV G PGVT+ G +I P ++ ++D
Sbjct: 124 GIPNVGKSSFINRMTK------------KRSTVTGDKPGVTR---GKQIIRFPNNVQLMD 168
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P+ D L+LA G IKD ++ +A L+ L
Sbjct: 169 TPGILWPNFEDELVALRLAFCGCIKDEILDTSTLAVRLIDYL 210
>gi|418070623|ref|ZP_12707898.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
gi|357540043|gb|EHJ24060.1| GTP-binding protein [Lactobacillus rhamnosus R0011]
Length = 285
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A + ++ ++K DL++EV D+R P SS +P L + K R+I LNK+DL
Sbjct: 3 IQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + N+WVR++ + IAI+A +Q++ + + E I+R+ P +
Sbjct: 63 ADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + + A G PGVT++ K + + +
Sbjct: 123 AMCIGIPNVGKSTVLNRL-----------VRKNIAVTGNKPGVTKNQQWLKASD--NFQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P G++LA +G+I D+V E+ + Y LA
Sbjct: 170 LDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLAYF 213
>gi|228902341|ref|ZP_04066498.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|423561756|ref|ZP_17538032.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|434376941|ref|YP_006611585.1| GTPase YlqF [Bacillus thuringiensis HD-789]
gi|228857310|gb|EEN01813.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 4222]
gi|401202013|gb|EJR08878.1| ribosome biogenesis GTPase A [Bacillus cereus MSX-A1]
gi|401875498|gb|AFQ27665.1| GTPase YlqF [Bacillus thuringiensis HD-789]
Length = 296
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 21/248 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + + P + N
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKQ-YPERLKERYNLN 228
Query: 258 EVSQSETE 265
E+ + E
Sbjct: 229 EIPEDIVE 236
>gi|423395861|ref|ZP_17373062.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|423406737|ref|ZP_17383886.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
gi|401653603|gb|EJS71147.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-1]
gi|401660027|gb|EJS77510.1| ribosome biogenesis GTPase A [Bacillus cereus BAG2X1-3]
Length = 296
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 21/248 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKEWIAYFKEKGHMAISINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + + P + N
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME-KHYPARLKERYNLN 228
Query: 258 EVSQSETE 265
E+ + E
Sbjct: 229 EIPEDIVE 236
>gi|423615901|ref|ZP_17591735.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
gi|401260438|gb|EJR66611.1| ribosome biogenesis GTPase A [Bacillus cereus VD115]
Length = 296
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKEWIAYFKEKGHMAISINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L + +H R
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLDDI 230
>gi|288553082|ref|YP_003425017.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
gi|288544242|gb|ADC48125.1| hypothetical protein BpOF4_00280 [Bacillus pseudofirmus OF4]
Length = 285
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 21/222 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + + K R++ LNK DL
Sbjct: 3 IQWFPGHMAKARREVTEKLKLIDVVIELVDARLPLSSRNPMMDEIVGQKPRLVLLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL--------LELVELKLKEVISREPTL 136
A+P++ KW +F+ +AINA + V+K+ L+E K K + +
Sbjct: 63 ADPHMTKKWAGYFEEKGATVLAINAQTGKGVEKISGACRKLASPLIE-KWKSKGMKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + K A VG PGVT+ K+ + +
Sbjct: 122 RGMILGIPNVGKSTLINRLAS-----------KKIAKVGDRPGVTKKQQWIKVGND-ELE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G +LA +G+IKD ++ + IA ++L
Sbjct: 170 LLDTPGILWPKFEDQVIGYRLAATGAIKDELLDFQDIALFVL 211
>gi|338716360|ref|XP_003363446.1| PREDICTED: mitochondrial GTPase 1-like [Equus caballus]
Length = 345
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 12/216 (5%)
Query: 33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNK 92
A+ + ++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+ K
Sbjct: 39 ASGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLKERQK 98
Query: 93 WVRHFDS-CKQDYIAINAHSRSSVQKLL----ELVELKLKEVISREPTLLVMVVGVPNVG 147
+RH + ++ I N +V++++ EL+ + +MV+GVPNVG
Sbjct: 99 IIRHLEGEGLKNVIFTNCVKDENVKQIVPMVTELIGSSYRYHRGESLEYCIMVIGVPNVG 158
Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVP 206
KS+LINS+ + L K K VG PG+T+ + ++ RP +++LDTPGVL P
Sbjct: 159 KSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAP 212
Query: 207 SIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 213 RIESVETGLKLALCGTVLDHLVGEETLADYLLYTLN 248
>gi|312111696|ref|YP_003990012.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|336236071|ref|YP_004588687.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720614|ref|ZP_17694796.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216797|gb|ADP75401.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y4.1MC1]
gi|335362926|gb|AEH48606.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365967|gb|EID43258.1| ribosome biogenesis GTP-binding protein ylqF [Geobacillus
thermoglucosidans TNO-09.020]
Length = 281
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 21/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ +LK+ D+V E+ D+RIP+SS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPMSSRNPMINEILGNKPRIVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------- 135
+A+ +W+ +F + +AI+A + + +++++ + + LK+ ++
Sbjct: 62 MADEAATQQWIAYFQQQQLRALAIDAQTGTGIKQIVAVSKEMLKDKFAKMAAKGIKNPRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ ++VG+PNVGKS LIN + +++ G PGVT+ K+ +
Sbjct: 122 MRALIVGIPNVGKSTLINRLAGRNIAK-----------TGDKPGVTKAQQWIKVGK--EM 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P + E GLKLA +G+IKD+++ + +A Y L L
Sbjct: 169 ELLDTPGILWPKFEEEEVGLKLATTGAIKDTILNLQDVAVYALNFL 214
>gi|229192007|ref|ZP_04318977.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
gi|228591558|gb|EEK49407.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus ATCC
10876]
Length = 296
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|317129226|ref|YP_004095508.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
gi|315474174|gb|ADU30777.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
cellulosilyticus DSM 2522]
Length = 282
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA A R ++ +LK+ D+VIE+ D+R+PLSS +P + + +K R+I LNK D
Sbjct: 2 SIQWFPGHMAKAKRQVQEKLKVIDVVIELVDARVPLSSRNPMIDELVKSKPRLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
LA+ + + WV++F++ INA + V+K+ +VE K + + P +
Sbjct: 62 LADQKVTDLWVKYFETKGFAVQQINAQKGTGVKKIPAIVEKLAKPITDKMRAKGMNPRAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS +IN + + ATVG PGVT+ K+ +
Sbjct: 122 RALILGIPNVGKSTIINRLAN-----------KRIATVGDKPGVTKAQQWIKVGK--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G +LAL+G+IK+ + +LL L
Sbjct: 169 LLDTPGILWPKFEDESVGFRLALTGAIKEELFDFNETTLFLLRYL 213
>gi|160915180|ref|ZP_02077393.1| hypothetical protein EUBDOL_01188 [Eubacterium dolichum DSM 3991]
gi|158432979|gb|EDP11268.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium dolichum
DSM 3991]
Length = 292
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHM A R ++ +LK+ D VIE+RD+RIP +S +P L K R+I L+K+D
Sbjct: 10 NIQWFPGHMTKAKREMQEKLKMVDFVIELRDARIPNASRNPMLDELCKQKPRLIILSKRD 69
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
A + +W+ H + +A++ S Q ++ +L++ K++ +I R P +
Sbjct: 70 KAQASYTKQWIAHLSNETTKVLALDILKDSVTQMVVDASQQLMKAKIERMIRRGIRPRAM 129
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVGVPNVGKS IN I K K AT G PGVT+ + ++ +
Sbjct: 130 RAMVVGVPNVGKSTFINRIS-----------KKKIATTGDRPGVTKALQWSRVNK--DLE 176
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D + GL LA++G+I+D V+ + IA + + L
Sbjct: 177 LLDTPGVLWPKFEDEQVGLLLAVTGAIRDEVLPIDEIALWAMRWL 221
>gi|206972755|ref|ZP_03233685.1| GTPase family protein [Bacillus cereus AH1134]
gi|218898991|ref|YP_002447402.1| ribosomal biogenesis GTPase [Bacillus cereus G9842]
gi|228909663|ref|ZP_04073486.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|228940926|ref|ZP_04103485.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228954114|ref|ZP_04116143.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228966783|ref|ZP_04127827.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228973855|ref|ZP_04134431.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980445|ref|ZP_04140755.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|229071336|ref|ZP_04204559.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|229081093|ref|ZP_04213603.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|229180114|ref|ZP_04307458.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|384187898|ref|YP_005573794.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402558836|ref|YP_006601560.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|410676212|ref|YP_006928583.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|423359126|ref|ZP_17336629.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|423385341|ref|ZP_17362597.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|423412357|ref|ZP_17389477.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|423425974|ref|ZP_17403005.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|423431858|ref|ZP_17408862.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|423437293|ref|ZP_17414274.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|423503485|ref|ZP_17480077.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|423528301|ref|ZP_17504746.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|423635391|ref|ZP_17611044.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|449090779|ref|YP_007423220.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200277|ref|YP_007480358.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|206732320|gb|EDZ49512.1| GTPase family protein [Bacillus cereus AH1134]
gi|218544561|gb|ACK96955.1| GTPase family protein [Bacillus cereus G9842]
gi|228603323|gb|EEK60800.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus 172560W]
gi|228702137|gb|EEL54613.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock4-2]
gi|228711790|gb|EEL63742.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus F65185]
gi|228779265|gb|EEM27522.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
Bt407]
gi|228785880|gb|EEM33883.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228792882|gb|EEM40440.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228805680|gb|EEM52270.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228818762|gb|EEM64828.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228849952|gb|EEM94783.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
IBL 200]
gi|326941607|gb|AEA17503.1| ribosomal biogenesis GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401084998|gb|EJP93244.1| ribosome biogenesis GTPase A [Bacillus cereus VD022]
gi|401104425|gb|EJQ12402.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3O-2]
gi|401110721|gb|EJQ18620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG3X2-2]
gi|401116614|gb|EJQ24452.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4O-1]
gi|401120448|gb|EJQ28244.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X12-1]
gi|401278142|gb|EJR84078.1| ribosome biogenesis GTPase A [Bacillus cereus VD156]
gi|401635397|gb|EJS53152.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1X1-2]
gi|401787488|gb|AFQ13527.1| GTPase YlqF [Bacillus thuringiensis HD-771]
gi|402451964|gb|EJV83783.1| ribosome biogenesis GTPase A [Bacillus cereus HuB1-1]
gi|402458839|gb|EJV90579.1| ribosome biogenesis GTPase A [Bacillus cereus HD73]
gi|409175341|gb|AFV19646.1| ribosome biogenesis GTPase A [Bacillus thuringiensis Bt407]
gi|449024536|gb|AGE79699.1| GTPase family protein [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105670|gb|AGG02610.1| 50S ribosomal subunit maturation GTPase RbgA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 296
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|423612055|ref|ZP_17587916.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
gi|401247062|gb|EJR53406.1| ribosome biogenesis GTPase A [Bacillus cereus VD107]
Length = 296
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L +
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFM 213
>gi|228922592|ref|ZP_04085892.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|365159385|ref|ZP_09355566.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
gi|228837021|gb|EEM82362.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363625383|gb|EHL76424.1| ribosome biogenesis GTPase A [Bacillus sp. 7_6_55CFAA_CT2]
Length = 296
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|30021926|ref|NP_833557.1| ribosomal biogenesis GTPase [Bacillus cereus ATCC 14579]
gi|218236121|ref|YP_002368639.1| ribosomal biogenesis GTPase [Bacillus cereus B4264]
gi|228960054|ref|ZP_04121718.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047525|ref|ZP_04193115.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|229111309|ref|ZP_04240862.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|229129114|ref|ZP_04258087.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|229146409|ref|ZP_04274780.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|229152037|ref|ZP_04280232.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|296504333|ref|YP_003666033.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|423585753|ref|ZP_17561840.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|423628931|ref|ZP_17604680.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|423641081|ref|ZP_17616699.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|423649701|ref|ZP_17625271.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|423656697|ref|ZP_17631996.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
gi|81580508|sp|Q819W8.1|RBGA_BACCR RecName: Full=Ribosome biogenesis GTPase A
gi|29897482|gb|AAP10758.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218164078|gb|ACK64070.1| GTPase family protein [Bacillus cereus B4264]
gi|228631386|gb|EEK88020.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus m1550]
gi|228637042|gb|EEK93501.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-ST24]
gi|228654351|gb|EEL10216.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus
BDRD-Cer4]
gi|228672085|gb|EEL27376.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-15]
gi|228723772|gb|EEL75127.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus AH676]
gi|228799570|gb|EEM46523.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325385|gb|ADH08313.1| ribosomal biogenesis GTPase [Bacillus thuringiensis BMB171]
gi|401233099|gb|EJR39595.1| ribosome biogenesis GTPase A [Bacillus cereus VD045]
gi|401268476|gb|EJR74524.1| ribosome biogenesis GTPase A [Bacillus cereus VD154]
gi|401280142|gb|EJR86064.1| ribosome biogenesis GTPase A [Bacillus cereus VD166]
gi|401282981|gb|EJR88878.1| ribosome biogenesis GTPase A [Bacillus cereus VD169]
gi|401290438|gb|EJR96132.1| ribosome biogenesis GTPase A [Bacillus cereus VD200]
Length = 296
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|307176883|gb|EFN66224.1| Mitochondrial GTPase 1 [Camponotus floridanus]
Length = 328
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 125/232 (53%), Gaps = 19/232 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
I WFPGHM + ++ RLK D ++EV D+RIP+S + L+ K + L+KKD
Sbjct: 22 IRWFPGHMTKGLKQMQQRLKHVDCILEVHDARIPISGRYADFSRTLTGLKPHIFVLSKKD 81
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS--------REPT 135
LA+ V + I + + +++ L K++IS +E +
Sbjct: 82 LADRKYSKSIVSTLNREGLSNIIFTNLKDEQCKNMKKILPLA-KKLISNSSRYNRAQEES 140
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDI-AGFKIAHRP 193
+MV+GVPNVGKS+LIN + L+ RAT VG PG+T+ + KI+ P
Sbjct: 141 YCMMVIGVPNVGKSSLINRLRSNHLN-------MARATHVGAEPGITRSVLTRIKISEDP 193
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
++++ DTPG+L PSI DI TG KLAL G ++D VVG +A YLL LN G
Sbjct: 194 TVFLFDTPGILAPSIKDIHTGFKLALVGCLQDHVVGSYMLADYLLFWLNKNG 245
>gi|167037683|ref|YP_001665261.1| HSR1-like GTP-binding protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116098|ref|YP_004186257.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856517|gb|ABY94925.1| GTP-binding protein, HSR1-related [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929189|gb|ADV79874.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 277
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRIILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + + +N+ + ++++ E ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKGKGIEAVKVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 MIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRALHWIKT---PYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|403667643|ref|ZP_10932943.1| hypothetical protein KJC8E_02657 [Kurthia sp. JC8E]
Length = 284
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + LK+ D+V E+ D+R+P+SS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTENLKLVDIVFELIDARLPMSSRNPMLDEIIHQKNRLLILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
+A+ KW+ +F+S IA+N+ ++++ + E L E R + +
Sbjct: 62 MADEVQTKKWIAYFESKGHRAIAVNSLDSKGLKRVTKAAEEVLAEKWERMRSKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS +IN + + ++R G +PGVT+ K+ + +
Sbjct: 122 RAMIVGIPNVGKSTMINRLAKKNIAR-----------TGNMPGVTRSQQWIKVGKQ--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KLA++G+IKD+++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDPRVGYKLAVTGAIKDAIMNMDDLAIFGLQFL 213
>gi|424787770|ref|ZP_18214534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
gi|422113524|gb|EKU17262.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius BA1]
Length = 283
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+P SS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W R+F++ +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GEKIAVTGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P + + LKLAL+G+IKD ++ + +A +
Sbjct: 169 EILDTPGILWPKFEEADIALKLALTGAIKDDLLPMDEVAIF 209
>gi|358067000|ref|ZP_09153486.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
gi|356694849|gb|EHI56504.1| ribosome biogenesis GTP-binding protein YlqF [Johnsonella ignava
ATCC 51276]
Length = 295
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 118/211 (55%), Gaps = 22/211 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A RAI+ +KI D++IE+RD+RIPL+S++P + K RVI LNK DL
Sbjct: 3 IQWYPGHMTKAMRAIQEDIKIVDIIIEMRDARIPLASSNPDIAVLGQGKARVIVLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV--------ELKLKEVISREPTL 136
+N I W ++F I ++ + V+KL EL+ E LK IS P +
Sbjct: 63 SNEQINKAWAQYFRKQGCSCIFADSRQKGVVRKLTELLEEASKAKRERDLKRGISNRP-V 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+V+G+PNVGKS LINSI A G PGVT+ ++ + +
Sbjct: 122 RAIVLGIPNVGKSTLINSI-----------AGKGSAKTGNKPGVTKGNQWIRLNKQ--VE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSV 227
+LDTPG+L+P I + ET +KLA G++ D V
Sbjct: 169 LLDTPGMLMPKIENEETAVKLAFIGTVNDLV 199
>gi|323702666|ref|ZP_08114327.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333923310|ref|YP_004496890.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532329|gb|EGB22207.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
nigrificans DSM 574]
gi|333748871|gb|AEF93978.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 282
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 155/312 (49%), Gaps = 54/312 (17%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ LK+ D IE+ D+RIP+SS +P + + K R++ LNK D
Sbjct: 4 QIQWFPGHMAKAKRQVQDALKLVDAAIELLDARIPVSSRNPMIDQIVGNKPRLVILNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------REP-TL 136
LA+PN+ +W + + IAI+ ++++ + L + + ++ R P
Sbjct: 64 LADPNLTKQWQKQLERPNVKVIAIDTIKGEGIKEVPRMASLLVADQMAKLAAKGRRPRAT 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS+ IN R ++ TK G LPGVT+ K+A S+
Sbjct: 124 RCMVLGIPNVGKSSFIN--------RLVGRKATK---TGNLPGVTKGQQWIKVAG--SLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G KLA++G+IK+ V +A L L W N
Sbjct: 171 LLDTPGILWPKFEDPEVGFKLAVTGAIKEQVFNFYEVALKL----------LQWLTEKNP 220
Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDV-TYIEDLVTGVQRALHVSLSEFDGNVED 315
++ K Y L DL P D+ T ++D+ G +R L ++ G V D
Sbjct: 221 DQI-------KVRYKLTDLAP---------DIPTLLQDI--GARRGLLMA-----GGVVD 257
Query: 316 ENDLESLIEQQF 327
E LI ++F
Sbjct: 258 ELKAAQLIIKEF 269
>gi|374287713|ref|YP_005034798.1| putative GTPase [Bacteriovorax marinus SJ]
gi|301166254|emb|CBW25829.1| putative GTPase [Bacteriovorax marinus SJ]
Length = 324
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 28/228 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
NWFPGHMA A + + +LK+ D+V+E+RD+RIPL S + L+ L K R+I LNK +L
Sbjct: 44 FNWFPGHMAKAMKQVGEKLKMVDIVLELRDARIPLLSGNEDLKKVLGNKCRLIVLNKVNL 103
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI---------SREPT 135
+P L W + FD + +I IN R++V+ L+ K +E++ S E T
Sbjct: 104 CDPEKLADWKKWFDDNGEHHIFINVLDRNAVK----LITEKSREIVVANRIASGGSGEKT 159
Query: 136 --LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+M+VG+PN GKS LINS+ K A G PG+TQ K+A
Sbjct: 160 RKFRMMMVGLPNTGKSTLINSLGG-----------RKAAKSGDKPGLTQSQQWIKLA--G 206
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
I +LDTPG++ I E G+ L + +IKD ++G+E +A +++ L
Sbjct: 207 DIELLDTPGIMPRKIETREEGMWLCATHAIKDQILGQEEVACFVVEYL 254
>gi|291542666|emb|CBL15776.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus bromii
L2-63]
Length = 290
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 133/265 (50%), Gaps = 28/265 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM R I+ LK+ D V E+ D+RIP+SS +P L + K RVI LNK D+
Sbjct: 7 IQWFPGHMTKTKRQIQSSLKLVDAVAEIIDARIPVSSRNPDLAKLVQNKPRVILLNKCDM 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLELVELKLKEVISREPT 135
AN W+ +F KQ+ +AI +S +V ++ +LKE PT
Sbjct: 67 ANQTATKMWIDYFK--KQNLVAIPVDCKSGRGLDKFAPAVNTVMSHKIARLKEKGMVNPT 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +M+VG+PNVGKS+ IN + K RA V PGVT+ + IA ++
Sbjct: 125 IRIMIVGIPNVGKSSFINKMV-----------KKNRAKVEDRPGVTRGNQWYTIAK--NL 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPGVL P D G LA +G++KD ++ E +A LL + L
Sbjct: 172 EMLDTPGVLWPKFDDKTVGEHLAFTGAVKDQILDIELLAVRLLDFIKE----LKPADFIT 227
Query: 256 RTEVSQSETENKHEYNLKDLRPKRR 280
R ++ + EN Y L + K+R
Sbjct: 228 RFKLENEDVENIDSYELLKMIGKKR 252
>gi|429765770|ref|ZP_19298050.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
gi|429185623|gb|EKY26597.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium celatum
DSM 1785]
Length = 317
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P + S K R+I LNK
Sbjct: 2 AQINWFPGHMKKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLCSGKPRIILLNKS 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELKLKEVISR---EPT 135
DL + W++ + + +N +Q+ LLEL++ K + ++ +
Sbjct: 62 DLTESKVTKAWIKELSNENVKVLEVNCLRGQGLQQIKPALLELLKEKHERAKAKGLVKFM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ VMVVGVPN GKS IN + K A G GVT+ K A +
Sbjct: 122 MRVMVVGVPNCGKSTFINKMA-----------KNNIAKTGDRAGVTKSKQWIKTAF--DM 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D T L LA +G+IKD ++ E +A L+ L
Sbjct: 169 EMLDTPGVLWPKFEDETTALNLAFTGAIKDEIMDIEELAYMLVKRL 214
>gi|229098307|ref|ZP_04229254.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|229117324|ref|ZP_04246702.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|407706297|ref|YP_006829882.1| chitin-binding protein [Bacillus thuringiensis MC28]
gi|423378323|ref|ZP_17355607.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|423441431|ref|ZP_17418337.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|423448343|ref|ZP_17425222.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|423464505|ref|ZP_17441273.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|423533847|ref|ZP_17510265.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|423540884|ref|ZP_17517275.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|423547122|ref|ZP_17523480.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|423623086|ref|ZP_17598864.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|228666224|gb|EEL21688.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock1-3]
gi|228685205|gb|EEL39136.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-29]
gi|401128937|gb|EJQ36620.1| ribosome biogenesis GTPase A [Bacillus cereus BAG5O-1]
gi|401172072|gb|EJQ79293.1| ribosome biogenesis GTPase A [Bacillus cereus HuB4-10]
gi|401178843|gb|EJQ86016.1| ribosome biogenesis GTPase A [Bacillus cereus HuB5-5]
gi|401259859|gb|EJR66033.1| ribosome biogenesis GTPase A [Bacillus cereus VD148]
gi|401636589|gb|EJS54343.1| ribosome biogenesis GTPase A [Bacillus cereus BAG1O-2]
gi|402418092|gb|EJV50392.1| ribosome biogenesis GTPase A [Bacillus cereus BAG4X2-1]
gi|402420772|gb|EJV53043.1| ribosome biogenesis GTPase A [Bacillus cereus BAG6O-1]
gi|402464066|gb|EJV95766.1| ribosome biogenesis GTPase A [Bacillus cereus HuB2-9]
gi|407383982|gb|AFU14483.1| Ras superfamily GTP-binding protein YlqF [Bacillus thuringiensis
MC28]
Length = 296
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKEWIAYFKEKGHMAISINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|258539617|ref|YP_003174116.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|385835265|ref|YP_005873039.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
gi|257151293|emb|CAR90265.1| GTP-binding protein [Lactobacillus rhamnosus Lc 705]
gi|355394756|gb|AER64186.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
rhamnosus ATCC 8530]
Length = 285
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A + ++ ++K DL++EV D+R P SS +P L + K R+I LNK+DL
Sbjct: 3 IQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRIIILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + N+WVR++ + IAI+A +Q++ + + E I+R+ P +
Sbjct: 63 ADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + + A G PGVT++ K + + +
Sbjct: 123 AMCIGIPNVGKSTVLNRL-----------VRKNIAVTGNKPGVTKNQQWLKASD--NFQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 170 LDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLTYF 213
>gi|421768951|ref|ZP_16205660.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|421771214|ref|ZP_16207874.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
gi|411185347|gb|EKS52475.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
rhamnosus LRHMDP2]
gi|411185800|gb|EKS52926.1| GTP-binding protein [Lactobacillus rhamnosus LRHMDP3]
Length = 285
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A + ++ ++K DL++EV D+R P SS +P L + K R+I LNK+DL
Sbjct: 3 IQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRIIILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + N+WVR++ + IAI+A +Q++ + + E I+R+ P +
Sbjct: 63 ADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + + A G PGVT++ K + + +
Sbjct: 123 AMCIGIPNVGKSTVLNRL-----------VRKNIAVTGNKPGVTKNQQWLKASD--NFQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 170 LDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLTYF 213
>gi|423070343|ref|ZP_17059119.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
gi|355365704|gb|EHG13424.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius F0413]
Length = 283
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+P SS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W R+F++ +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADAHLTKEWQRYFENQDIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P + + LKLAL+G+IKD V+
Sbjct: 169 EILDTPGILWPKFEEADIALKLALTGAIKDDVL 201
>gi|366165753|ref|ZP_09465508.1| GTP-binding protein YlqF [Acetivibrio cellulolyticus CD2]
Length = 321
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHMA + + +K+ D+VIE+ D+RIP+SS +P K ++I LNK D
Sbjct: 33 NIQWYPGHMAKTRKILNDNMKLVDVVIELLDARIPISSKNPDFDDIFKNKPKIIVLNKSD 92
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + N W + ++S I I++ ++ +L ++ +K+ I R+ +
Sbjct: 93 LADEKVCNSWSKWYNSKGYANIFIDSIKGKNINQLKGQMQNLMKDKIERDKLKGRISRPI 152
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS+LIN I A A G PGVT+ + + I
Sbjct: 153 KTMIVGIPNVGKSSLINKIAGKA-----------SAVTGDRPGVTRGKQWINVNDQ--IQ 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P DIE GL LA++G+IKD ++ +A L L
Sbjct: 200 LLDTPGILWPKFEDIEVGLNLAITGAIKDDILDTVELASTLFEKL 244
>gi|229104400|ref|ZP_04235069.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
gi|228679098|gb|EEL33306.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus Rock3-28]
Length = 296
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKEWIAYFKEKGHMAISINAQAGQGMKEITAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|383754889|ref|YP_005433792.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366941|dbj|BAL83769.1| putative ribosome biogenesis GTP-binding protein [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 297
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ WFPGHM A R I+ LK+ D+VIE+ D+RIPLSSA+P L + K R+IALNK D
Sbjct: 8 NLQWFPGHMKKAQRLIEENLKLVDVVIELLDARIPLSSANPMLAEIIKDKPRMIALNKSD 67
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE----LKLKEVISR--EP-TL 136
LA+ KW+ +F + + I++ +++L+++ E K ++ +S+ +P
Sbjct: 68 LADSASTKKWLDYFKAQGVPAVTIDSMKGKGMKQLVKVAEDLARPKTEKFVSKGAKPRAA 127
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN + +A PGVT+ KI ++
Sbjct: 128 RCMILGIPNVGKSSLINRLAGAV-----------KAKAADKPGVTRAKQWIKIGT--NLD 174
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GLKLA +G+I D + E++ LL ++
Sbjct: 175 LLDTPGILWPKFEDQTVGLKLAFTGAINDDIYDREQVTALLLGIM 219
>gi|56419739|ref|YP_147057.1| ribosomal biogenesis GTPase [Geobacillus kaustophilus HTA426]
gi|56379581|dbj|BAD75489.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 286
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D+ E+ D+R+P+SS +P + L K R+I LNK D+
Sbjct: 4 IQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDEILGQKPRLILLNKADM 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPTL 136
A+ + +W+R+F + + I+A S + V+++ E+V+ K +++ I +
Sbjct: 64 ADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPV 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 124 RALIVGIPNVGKSTLINRLAGRHI-----------AKTGDKPGVTKAQQWIKVGK--EME 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G KLA++G+IKD ++ + +A Y L L+T
Sbjct: 171 LLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLST 217
>gi|331091008|ref|ZP_08339850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405230|gb|EGG84766.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 283
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 20/230 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+RIP+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPMSSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEDRQTDAWAEYFRGKGYSVVKVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGT 246
+LDTPG+L P D + GLKLA GSIKD ++ E +A L+ LN T
Sbjct: 169 LLDTPGILWPKFEDQQVGLKLAFIGSIKDEILNTEELAGELIKFLNAHYT 218
>gi|326204814|ref|ZP_08194668.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
gi|325985026|gb|EGD45868.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
papyrosolvens DSM 2782]
Length = 292
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA R I LK+ D++IE+ D+RIP SS +P + ++ K R+IA NK D
Sbjct: 2 NIQWFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLINNKPRLIAFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ I +W++ + D I IN+ + + ++ + E I R +
Sbjct: 62 LADDRISRQWIKWYAEQGIDCILINSINGKGLNEIKARARELMSEKIERNKAKGKLFTPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+ IN I A A G PGVT+ +I I
Sbjct: 122 RTMVVGIPNVGKSSFINKIVGRAT-----------AVTGDRPGVTRGKQWIRINS--EIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G+ LA +G+IKD ++ +A LL
Sbjct: 169 LLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMELL 210
>gi|268611247|ref|ZP_06144974.1| GTP-binding protein YlqF [Ruminococcus flavefaciens FD-1]
Length = 293
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 21/226 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA R I LK+ D V+E+ D+R PLSS +P + K R+I LNK DL
Sbjct: 9 IQWFPGHMAKTRRLIAANLKLVDAVVEIVDARTPLSSRNPEMDSMTRNKPRLIVLNKCDL 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISRE-------PTL 136
A+ KW+ +F + + IA++ S ++ LL +V K LKE++ + +
Sbjct: 69 ADKKATQKWINYFRNNGSEAIAVDCKSGKGLKNLLPVVRTKVLKELMEKRERSGMKGAAV 128
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VG+PNVGKS+LIN + KRA V PGVT+ K+ + +
Sbjct: 129 RLMIVGIPNVGKSSLINRMAG-----------GKRAKVEDRPGVTRTKQWVKLDNNTEL- 176
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LD PGVL P D ++LA +G+I D ++ E +A LL L+
Sbjct: 177 -LDMPGVLWPKFEDQSAAVRLAFTGAISDDILDIETLAMKLLVFLS 221
>gi|229162774|ref|ZP_04290731.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
gi|228620656|gb|EEK77525.1| Ras superfamily GTP-binding protein YlqF [Bacillus cereus R309803]
Length = 296
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 37/258 (14%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLA-----------KKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D GL+LA +G+IKDS++ + +A Y + +H R
Sbjct: 170 LDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYAFRFME--------KHYPERL 221
Query: 258 EVSQSETENKHEYNLKDL 275
K YNL D+
Sbjct: 222 ---------KERYNLNDI 230
>gi|399924188|ref|ZP_10781546.1| putative GTPase [Peptoniphilus rhinitidis 1-13]
Length = 282
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 134/260 (51%), Gaps = 39/260 (15%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ +LK+ D VIE+ DSRIP SS +P L K+R++ NK D
Sbjct: 2 NINWYPGHMKKTIEDIEKKLKLVDFVIEIIDSRIPYSSRNPLFDELLKNKKRLLIFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
L++P + +W++ I+ NA ++ +V +++ E + E I ++ L
Sbjct: 62 LSDPKLNEEWMKKLTDENNFAISYNA-TKPNVNIVVKKAEDLMSEEIKKYEEKGLKKGPL 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS INSI TK A G PGVT+ KI P ++
Sbjct: 121 RAMIVGIPNSGKSTFINSISG-----------TKSAKTGNRPGVTKTNQWIKI--HPKLH 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPGVL P + GL LA +G+IKD ++ E +A L+ L
Sbjct: 168 LLDTPGVLWPKFEE-NVGLNLAFTGAIKDEIMDRETLALKLIEKL--------------- 211
Query: 257 TEVSQSETENKHEYNLKDLR 276
++ + EN+ YNLKD++
Sbjct: 212 VKIDSTLIENR--YNLKDIK 229
>gi|392428770|ref|YP_006469781.1| GTP-binding protein [Streptococcus intermedius JTH08]
gi|391757916|dbj|BAM23533.1| GTP-binding protein [Streptococcus intermedius JTH08]
Length = 295
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+P SS +P L + K +++ LNK
Sbjct: 14 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKA 73
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W R+F++ +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 74 DLADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 133
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K +
Sbjct: 134 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVTGNKPGVTKGQQWLK--SNKDL 180
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKL+L+G+IKD V+
Sbjct: 181 EILDTPGILWPKFEDEKVALKLSLTGAIKDDVL 213
>gi|414160551|ref|ZP_11416817.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878071|gb|EKS25960.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 289
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 141/293 (48%), Gaps = 23/293 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIQNKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
AN N KW +F S ++++A ++ + + KE R+ +
Sbjct: 63 ANLNETAKWEDYFRSKGYFPVSVDAKHGKGLKSVEQAAVQATKEKFERDKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + A+ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANKAI-----------AKTGNTPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D G KL+L+G+IKDS+V + +A + L +H N
Sbjct: 170 LDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDDVAIFGLEFYKAHALEALQKHYNIDL 229
Query: 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFD 310
+ +E EN ++ R + N D + +L+ R + FD
Sbjct: 230 D---AEAENIEWFDAIGRRRGLLQRGNEVDYESVIELIINDIRNAKLGTQSFD 279
>gi|34499367|ref|NP_903582.1| hypothetical protein CV_3912 [Chromobacterium violaceum ATCC 12472]
gi|34105217|gb|AAQ61573.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 312
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 20/258 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A + + RLK D+VIE+ D+R+P SSA+P L K R++ LNK+DL
Sbjct: 3 IQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
A+P + +W+ + + KQ + + ++A R+ Q+L+ E L V++ G+
Sbjct: 63 ADPAVTEQWLAWYRAKKQTEALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLICGI 122
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS LINS+ K A G +PGVT++ +A +Y DTPG+
Sbjct: 123 PNVGKSTLINSMSS-----------RKIAKTGNMPGVTKNEQRIILADDFELY--DTPGM 169
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWR-HLNNRTEVSQS 262
L P I E G LA SG++ + + EE +A LL L +H+R L R ++ +
Sbjct: 170 LWPKIEVEEGGYNLAASGAVGRNAMDEEEVALELLKYL-----LVHYRAELAARYKLDEE 224
Query: 263 ETENKHEYNLKDLRPKRR 280
E + ++ + KRR
Sbjct: 225 ELDGAQDWQALERIGKRR 242
>gi|261419404|ref|YP_003253086.1| ribosomal biogenesis GTPase [Geobacillus sp. Y412MC61]
gi|297530621|ref|YP_003671896.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|319766219|ref|YP_004131720.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|448237360|ref|YP_007401418.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
gi|261375861|gb|ACX78604.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC61]
gi|297253873|gb|ADI27319.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
C56-T3]
gi|317111085|gb|ADU93577.1| ribosome biogenesis GTP-binding protein YlqF [Geobacillus sp.
Y412MC52]
gi|445206202|gb|AGE21667.1| ribosomal biogenesis GTPase A [Geobacillus sp. GHH01]
Length = 288
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D+ E+ D+R+P+SS +P + L K R+I LNK D+
Sbjct: 6 IQWFPGHMAKAKREVQEKLKLIDVAFELLDARVPMSSRNPMIDEILGQKPRLILLNKADM 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPTL 136
A+ + +W+R+F + + I+A S + V+++ E+V+ K +++ I +
Sbjct: 66 ADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPV 125
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 126 RALIVGIPNVGKSTLINRLAGRHI-----------AKTGDKPGVTKAQQWIKVGK--EME 172
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G KLA++G+IKD ++ + +A Y L L+T
Sbjct: 173 LLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLST 219
>gi|410456957|ref|ZP_11310804.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
gi|409926931|gb|EKN64082.1| GTPase YlqF [Bacillus bataviensis LMG 21833]
Length = 290
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D++ E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLVDIIFELVDARIPYSSRNPMIDEIIQHKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
+A+P+ +W+ +F +AIN+ + ++ +++ LKE R P +
Sbjct: 62 MADPSATKEWISYFADKGIKALAINSQAGEGMKNIVQASHEILKEKFDRLKAKGVNPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RAMIVGIPNAGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G+KLA++G+IKD+++ + + Y L L
Sbjct: 169 LLDTPGILWPKFEDQEVGMKLAITGAIKDTLLNLQDLTVYSLRFL 213
>gi|167040344|ref|YP_001663329.1| HSR1-like GTP-binding protein [Thermoanaerobacter sp. X514]
gi|300914428|ref|ZP_07131744.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307724336|ref|YP_003904087.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
gi|166854584|gb|ABY92993.1| GTP-binding protein, HSR1-related [Thermoanaerobacter sp. X514]
gi|300889363|gb|EFK84509.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X561]
gi|307581397|gb|ADN54796.1| ribosome biogenesis GTP-binding protein YlqF [Thermoanaerobacter
sp. X513]
Length = 277
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ +F + + +N+ + ++++ E ++++ ++ P L
Sbjct: 62 ADDVITDLWIEYFKGKGIEAVKVNSITGFGLKEINEATNKVCQDILEKKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M+VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 MIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRALHWIKT---PYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|312143697|ref|YP_003995143.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
gi|311904348|gb|ADQ14789.1| ribosome biogenesis GTP-binding protein YlqF [Halanaerobium
hydrogeniformans]
Length = 285
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 139/264 (52%), Gaps = 33/264 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R +K LK+ DL+IEV D+R P S+ +P LQ + ++RV LNKKDL
Sbjct: 2 IQWYPGHMAKAKRILKDDLKLVDLIIEVLDARAPYSTQNPDLQSLVKDQKRVAVLNKKDL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLEL-------VELKLKEVISREPTLL 137
A+P + KW+ +F K + + +N+ + V +L L + KL + + +
Sbjct: 62 ADPELNQKWLNYF---KGEAVLLNSITGEGVGELKNLLNGLHYEITNKLSKKGRKARRIR 118
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKSALIN + +K A + PGVT+ ++ + + +
Sbjct: 119 AMIIGIPNVGKSALINLLAG-----------SKAANIADKPGVTRGRQWVNVSKK--VRL 165
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL-NTRGTPLHWRHLNNR 256
LDTPG+L PS D +T KLAL+G++ + V E A L+ + N + L
Sbjct: 166 LDTPGILWPSFSDEDTAYKLALTGAVSNDVFDFELAAYKLIKFIKNIKAEKLE------- 218
Query: 257 TEVSQSETENKHEYN-LKDLRPKR 279
E Q + H Y+ L D+ KR
Sbjct: 219 -EFYQLDYLADHSYDILADIARKR 241
>gi|227893502|ref|ZP_04011307.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
gi|227864672|gb|EEJ72093.1| GTP-binding protein [Lactobacillus ultunensis DSM 16047]
Length = 279
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 139/249 (55%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P ++ + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGNKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+PN+ +W + + +A+++ +++QKL+ LV+ KL+ + PT+
Sbjct: 64 ADPNLTKEWAKKLSGANKYVLALDSLHNTNMQKLISLVKKASAEKTKKLEARGASNPTIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ + G+PN GKS +IN + + R A VG PGVT+ K + +I V
Sbjct: 124 IALAGIPNCGKSTVINRL----VGR-------NVAEVGNKPGVTKGQRWLKTS--ANIQV 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D E G KLA G+IKDSV + +A ++L L + ++L +
Sbjct: 171 LDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVLENLREH----YLKNLVKFS 226
Query: 258 EVSQSETEN 266
+++QS+ EN
Sbjct: 227 KLNQSDIEN 235
>gi|419776422|ref|ZP_14302344.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
gi|383845833|gb|EID83233.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
intermedius SK54]
Length = 283
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+P SS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPFSSQNPMLTKIVGDKPKLLVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ ++ +W R+F++ +AIN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADAHLTKEWRRYFENQGIKTLAINSKEQSTVKKVTEAAKSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKL+L+G+IKD V+
Sbjct: 169 EILDTPGILWPKFEDEKVALKLSLTGAIKDDVL 201
>gi|294500953|ref|YP_003564653.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
gi|294350890|gb|ADE71219.1| ribosome biogenesis GTPase A [Bacillus megaterium QM B1551]
Length = 288
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 21/228 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPT 135
A+P + +W+ ++ +AI+A + +++++ EL++ K + + +
Sbjct: 62 KADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + K A G PGVTQ K+ + +
Sbjct: 122 IRAMIVGIPNVGKSTLINRLAS-----------KKIAKTGDRPGVTQAQQWIKVGN--EL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G KLA +G+IKD+++ + +A Y L L++
Sbjct: 169 ELLDTPGILWPKFEDEKVGYKLATTGAIKDTILNMQDVAVYALRFLSS 216
>gi|392960563|ref|ZP_10326031.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|421054680|ref|ZP_15517645.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|421061048|ref|ZP_15523432.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|421063740|ref|ZP_15525686.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
gi|421071543|ref|ZP_15532659.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392440361|gb|EIW18041.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B4]
gi|392446808|gb|EIW24079.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A11]
gi|392452123|gb|EIW29076.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
B3]
gi|392455140|gb|EIW31947.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
DSM 17108]
gi|392462310|gb|EIW38405.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
A12]
Length = 286
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM A R I+ LK+ D+VIE+ D+RIP+SSA+P + L K RV+ALNK D
Sbjct: 5 NINWFPGHMTKALRMIQANLKLVDVVIELLDARIPVSSANPVIHQILEGKPRVVALNKID 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE----LKLKEVISR--EP-TL 136
LA P +WV F + + I++ + + L+ VE K +++++ P +
Sbjct: 65 LAEPEWTKQWVDTFHAQGLQVVTIDSMTGRGTKALVSQVEQLGSAKAAKLVAKGVNPRAV 124
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN + TK PGVT+ I ++
Sbjct: 125 RAMILGIPNVGKSSLINRLL-----------GTKAVRTADKPGVTRGKQWITIGK--NLE 171
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D E G KLA++G+I D + E LL L
Sbjct: 172 LLDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFL 216
>gi|47570717|ref|ZP_00241305.1| GTPase of unknown function [Bacillus cereus G9241]
gi|47552615|gb|EAL11078.1| GTPase of unknown function [Bacillus cereus G9241]
Length = 225
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + ++ K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ ++ +W+ +F I+INA + ++++ ++ +KE R +
Sbjct: 63 ADDHLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVGK--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L
Sbjct: 170 LDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYAL 210
>gi|15924233|ref|NP_371767.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926826|ref|NP_374359.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
N315]
gi|148267734|ref|YP_001246677.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH9]
gi|150393792|ref|YP_001316467.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
JH1]
gi|156979564|ref|YP_001441823.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315601|ref|ZP_04838814.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006030|ref|ZP_05144631.2| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795701|ref|ZP_05644680.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|258415925|ref|ZP_05682195.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|258421687|ref|ZP_05684611.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|258434843|ref|ZP_05688917.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|258444581|ref|ZP_05692910.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|258447586|ref|ZP_05695730.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|258449428|ref|ZP_05697531.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|258454807|ref|ZP_05702771.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282892731|ref|ZP_06300966.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|282927585|ref|ZP_06335201.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|295406178|ref|ZP_06815985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297244406|ref|ZP_06928289.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|384864470|ref|YP_005749829.1| hypothetical protein ECTR2_1099 [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|387150386|ref|YP_005741950.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|415691093|ref|ZP_11453332.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650895|ref|ZP_12300658.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|417802680|ref|ZP_12449737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|417892142|ref|ZP_12536196.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|418424383|ref|ZP_12997505.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427378|ref|ZP_13000390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430219|ref|ZP_13003135.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433184|ref|ZP_13005961.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436855|ref|ZP_13008657.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439727|ref|ZP_13011434.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442779|ref|ZP_13014381.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445838|ref|ZP_13017314.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448782|ref|ZP_13020174.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451606|ref|ZP_13022940.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454662|ref|ZP_13025924.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457538|ref|ZP_13028741.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418638136|ref|ZP_13200439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|418654623|ref|ZP_13216519.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|418661562|ref|ZP_13223147.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878092|ref|ZP_13432327.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880920|ref|ZP_13435139.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883849|ref|ZP_13438044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418894942|ref|ZP_13449037.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418914341|ref|ZP_13468313.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920320|ref|ZP_13474253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418931313|ref|ZP_13485154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418991105|ref|ZP_13538766.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419785002|ref|ZP_14310760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|424768073|ref|ZP_18195366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|443636965|ref|ZP_21121058.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
gi|13701043|dbj|BAB42338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247013|dbj|BAB57405.1| similar to GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|147740803|gb|ABQ49101.1| Ras superfamily GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus JH9]
gi|149946244|gb|ABR52180.1| GTP-binding protein HSR1-related [Staphylococcus aureus subsp.
aureus JH1]
gi|156721699|dbj|BAF78116.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789673|gb|EEV28013.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9781]
gi|257839261|gb|EEV63735.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9763]
gi|257842373|gb|EEV66798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9719]
gi|257849204|gb|EEV73186.1| ribosomal biogenesis GTPase [Staphylococcus aureus A9299]
gi|257850074|gb|EEV74027.1| ribosomal biogenesis GTPase [Staphylococcus aureus A8115]
gi|257853777|gb|EEV76736.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6300]
gi|257857416|gb|EEV80314.1| ribosomal biogenesis GTPase [Staphylococcus aureus A6224]
gi|257863190|gb|EEV85954.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5937]
gi|282590588|gb|EFB95665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A10102]
gi|282764728|gb|EFC04853.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8117]
gi|285816925|gb|ADC37412.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
04-02981]
gi|294968766|gb|EFG44788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8819]
gi|297178436|gb|EFH37682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A8796]
gi|312829637|emb|CBX34479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131037|gb|EFT87021.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727079|gb|EGG63535.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21172]
gi|334274316|gb|EGL92638.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21318]
gi|341858109|gb|EGS98910.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21201]
gi|375014448|gb|EHS08129.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-99]
gi|375023360|gb|EHS16823.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038744|gb|EHS31705.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-122]
gi|377694214|gb|EHT18579.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694748|gb|EHT19112.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377714595|gb|EHT38794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714936|gb|EHT39134.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723227|gb|EHT47352.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377731813|gb|EHT55866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377757843|gb|EHT81731.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765679|gb|EHT89528.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383363603|gb|EID40935.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-M]
gi|387718614|gb|EIK06572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718965|gb|EIK06921.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720290|gb|EIK08202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725624|gb|EIK13228.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727959|gb|EIK15459.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730689|gb|EIK18050.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735766|gb|EIK22876.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737444|gb|EIK24510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VRS7]
gi|387737998|gb|EIK25052.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744487|gb|EIK31251.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745777|gb|EIK32527.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747270|gb|EIK33979.1| rbgA, ylqF- ribosomal biogenesis GTPase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348710|gb|EJU83689.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CM05]
gi|408423435|emb|CCJ10846.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408425425|emb|CCJ12812.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408427413|emb|CCJ14776.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408429400|emb|CCJ26565.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408431388|emb|CCJ18703.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408433382|emb|CCJ20667.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408435373|emb|CCJ22633.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408437358|emb|CCJ24601.1| Ribosome biogenesis GTPase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443406942|gb|ELS65512.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21236]
Length = 294
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+++ ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVSN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|418646168|ref|ZP_13208283.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
gi|375021634|gb|EHS15130.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-55]
Length = 294
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--TLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|332981642|ref|YP_004463083.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
gi|332699320|gb|AEE96261.1| ribosome biogenesis GTP-binding protein YlqF [Mahella australiensis
50-1 BON]
Length = 277
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 26/250 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N +W+PGHMA A +K +++ D+VIEV DSR P+SS L + K R+I LNK D
Sbjct: 2 NKSWYPGHMARALEDMKKFIRLVDIVIEVVDSRAPISSRDAVLDKMIGHKARIIVLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLV---MV 140
LA+ ++ W+++ S +AINA S + + KL ++ ++ V ++ V M+
Sbjct: 62 LADKRAVDTWLKYLKSKDVKAVAINAKSGADISKLKDI----MRSVENQHKDRRVKNAMI 117
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
VG+PNVGKS ++N++ K++R VG PG+T+ + FK+ ++DT
Sbjct: 118 VGIPNVGKSTILNAL-----------AKSRRTQVGARPGITRQVGWFKV---DEFQIMDT 163
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVS 260
PG+L P++ + L LA G+I D+ V E IA LL +L +R + L+ R VS
Sbjct: 164 PGILKPNLKNEIVKLHLACIGAIDDAAVDIEEIAVSLLDILQSR----YLDRLSQRYGVS 219
Query: 261 QSETE-NKHE 269
++ N +E
Sbjct: 220 ITDKRVNSYE 229
>gi|417896133|ref|ZP_12540100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
gi|341841034|gb|EGS82506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21235]
Length = 294
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|293374718|ref|ZP_06621026.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325840619|ref|ZP_08167100.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
gi|292646632|gb|EFF64634.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter
sanguinis PC909]
gi|325490268|gb|EGC92601.1| ribosome biogenesis GTP-binding protein YlqF [Turicibacter sp.
HGF1]
Length = 290
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 28/229 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ WFPGHMA A R I+ +L++ D+V E+ D+RIP SS++P + + K ++I LNK D
Sbjct: 2 TVQWFPGHMAKARRQIQEKLQLVDIVFELLDARIPYSSSNPMMNEIIKHKPKLIILNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-----------R 132
+A+PN+ +W+ +F Q I I+A +++++++ E KE++ R
Sbjct: 62 MADPNVTQQWLNYFKEQGQPAITIDALHQNAIKQITEAS----KEILKEKFAKEKAKGLR 117
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
+ M++G+PNVGKS L+N++ K K A G PGVT+ K+
Sbjct: 118 PRPVRAMILGIPNVGKSTLMNNL-----------AKRKAAQTGDRPGVTKAQQWVKVGQ- 165
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P + G LA++G+IKD+++ + I Y L L
Sbjct: 166 -ELELLDTPGVLWPKFEEKRVGYNLAVTGAIKDTILTLDHIILYALDYL 213
>gi|357235296|ref|ZP_09122639.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
gi|356883278|gb|EHI73478.1| ribosomal biogenesis GTPase [Streptococcus criceti HS-6]
Length = 283
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLNKIVGDKPKLLVLNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P ++ +W +F++ + INA +S+V++L E + + + + R + TL
Sbjct: 64 ADPLLIKEWQSYFENQGLKTLLINAKDQSTVKRLTEAAKSLMADKLERLKKKGINKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P D GLKLAL+G+IKD+++ + + +
Sbjct: 171 LDTPGILWPKFEDQLVGLKLALTGAIKDNLLPMDEVTIF 209
>gi|315222957|ref|ZP_07864836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
gi|315187907|gb|EFU21643.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus F0211]
Length = 283
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGEKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+ + IN+ +S+V+K+ E + +KE I+R+ T
Sbjct: 62 DLADPTLTKEWRNYFEKQGVKALPINSKEQSTVKKVTEAAQSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|403386846|ref|ZP_10928903.1| GTPase YlqF [Clostridium sp. JC122]
Length = 282
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 128/254 (50%), Gaps = 31/254 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK+ D VIE+RD+RI SSA+P ++ K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRRQIKENLKLVDAVIEIRDARIVKSSANPDIEDICQNKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE------------VISR 132
+ + +WV+ + +++N ++ + ++ LKE +++R
Sbjct: 63 SEEKVTKQWVKELSNEHTKVLSVNCLKGLGLKNIKPALDEMLKEKHDNLRNKGVVNIVTR 122
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
VMVVG+PNVGKS IN + K A G PGVT++ K +
Sbjct: 123 -----VMVVGIPNVGKSTFINKLA-----------KNNIAKTGDKPGVTRNKQWIKT--K 164
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRH 252
I ++DTPGVL P D GL LA +G+IKD ++ E +A L+ L P +
Sbjct: 165 IGIELMDTPGVLWPKFEDETVGLDLAFTGAIKDEIMDIEELALKLIETLQV-SYPERLKE 223
Query: 253 LNNRTEVSQSETEN 266
E+S+S EN
Sbjct: 224 RYKLPELSESALEN 237
>gi|392957506|ref|ZP_10323029.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
gi|391876469|gb|EIT85066.1| GTPase YlqF [Bacillus macauensis ZFHKF-1]
Length = 283
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 21/228 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R I +LK+ D+V E+ D+RIPL+S +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREITEKLKLIDVVFELVDARIPLASRNPMIDEITAGKPRLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL----LELVELKLKEV----ISREPT 135
+A+P +WV +F++ + +NA + + K+ ELV+ K ++ I +
Sbjct: 62 MADPEATKQWVHYFENKGLPVLVLNAKTGQGINKIEAKAKELVKEKFDKMKAKGIVKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +++G+PNVGKS LIN + + A G PGVT+ K+ S+
Sbjct: 122 VRALILGIPNVGKSTLINRLAGKNI-----------AVTGDKPGVTKKQQWIKVGT--SL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E GLKLA++G+IK++++ + Y L L
Sbjct: 169 ELLDTPGILWPKFEDQEIGLKLAVTGAIKETLLDFTEVVLYALGYLKV 216
>gi|291524516|emb|CBK90103.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
DSM 17629]
Length = 281
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 24/245 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R+I +NK D
Sbjct: 2 NFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W F ++++A S+S ++ + ++V KE I R+ +
Sbjct: 62 LADKERTREWSAFFKEKGFFVVSLDARSKSGMKNITDIVMEACKEKIERDRKRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ S+
Sbjct: 122 RAMVVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRLNK--SVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D GL+LAL GSIKD ++ + +A L+ L L L R
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGL----LAQR 224
Query: 257 TEVSQ 261
EVS+
Sbjct: 225 YEVSE 229
>gi|238923884|ref|YP_002937400.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
gi|238875559|gb|ACR75266.1| ribosomal biogenesis GTPase [Eubacterium rectale ATCC 33656]
Length = 281
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 24/245 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R+I +NK D
Sbjct: 2 NFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W F ++++A S+S ++ + ++V KE I R+ +
Sbjct: 62 LADKERTREWSAFFKEKGFFVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ S+
Sbjct: 122 RAMVVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRLNK--SVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D GL+LAL GSIKD ++ + +A L+ L L L R
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGL----LAQR 224
Query: 257 TEVSQ 261
EVS+
Sbjct: 225 YEVSE 229
>gi|384550000|ref|YP_005739252.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302332849|gb|ADL23042.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKSTAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|282916493|ref|ZP_06324255.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
gi|282319933|gb|EFB50281.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus D139]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAVYGLNFL 213
>gi|326923267|ref|XP_003207860.1| PREDICTED: mitochondrial GTPase 1-like [Meleagris gallopavo]
Length = 343
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 129/221 (58%), Gaps = 38/221 (17%)
Query: 43 LKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANP--------NILNKWV 94
L+ +D ++EV D+RIPLS +P LQ L + ++ LNK DLA+P + +
Sbjct: 69 LRRADCLVEVHDARIPLSGRNPVLQEVLGIRPHLLVLNKMDLADPRQQSRVLEQLRQQGC 128
Query: 95 RH--FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLLVMVVGVP 144
H F C+QD S+V+K++ LV +++S P +MV+GVP
Sbjct: 129 SHVVFTDCQQD---------SNVKKIVPLV----AKLVSSSPRYHRAESTEYSIMVIGVP 175
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGV 203
NVGKS+LINS+ ++ L +K K VG PGVT+ + ++ P +Y++DTPGV
Sbjct: 176 NVGKSSLINSLRRLHL------KKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGV 229
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
L P + D+ETG+KLAL G+I+D +VGE+ +A YLL VLN +
Sbjct: 230 LPPKLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLNQQ 270
>gi|154483563|ref|ZP_02026011.1| hypothetical protein EUBVEN_01267 [Eubacterium ventriosum ATCC
27560]
gi|149735473|gb|EDM51359.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
ventriosum ATCC 27560]
Length = 291
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 23/235 (9%)
Query: 19 TKGGGN---INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
+GG N INW+PGHM A R +K +K+ DLVIE+ D+RIPLSS +P + K R
Sbjct: 6 NQGGVNKSVINWYPGHMTKAVRQMKEDIKLIDLVIELLDARIPLSSRNPDIDDLGKNKAR 65
Query: 76 VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
++ LNK DLA+ NKW+++F + IN+ ++ ++++ V++ KE I R+
Sbjct: 66 LVLLNKSDLADETDNNKWIQYFKDKGIIALKINSKNKQGIKEINNAVQIACKEKIERDKK 125
Query: 136 -------LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188
+ MVVG+PNVGKS IN+ A A G PGVT+ K
Sbjct: 126 RGIINRPVRAMVVGIPNVGKSTFINAYAGRAA-----------AKTGNKPGVTKGKQWIK 174
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ ++ +LDTPG+L P + G+ LA GSI D+++ +A L+ +L T
Sbjct: 175 L--NKNLELLDTPGILWPKFDNQTIGMHLAFIGSINDNILDVTELAYQLVKLLAT 227
>gi|375008175|ref|YP_004981808.1| ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287024|gb|AEV18708.1| Ribosome biogenesis GTPase A [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 288
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D+ E+ D+R+P+SS +P + L K R+I LNK D+
Sbjct: 6 IQWFPGHMAKAKREVQEKLKLIDVAFELLDARLPMSSRNPMIDDILGQKPRLILLNKADM 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPTL 136
A+ + +W+R+F + + I+A S + V+++ E+V+ K +++ I +
Sbjct: 66 ADEAVTEQWIRYFHDQGRLALPIDAQSGTGVRQIAAAAKEMVKDKFEKMRAKGIKNPRPV 125
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 126 RALIVGIPNVGKSTLINRLAGRHI-----------AKTGDKPGVTKAQQWIKVGK--EME 172
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G KLA++G+IKD ++ + +A Y L L+T
Sbjct: 173 LLDTPGILWPKFEDEDVGYKLAVTGAIKDEILNLQDVAVYALRFLST 219
>gi|199599537|ref|ZP_03212925.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|258508403|ref|YP_003171154.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|385828073|ref|YP_005865845.1| putative GTPase [Lactobacillus rhamnosus GG]
gi|199589578|gb|EDY97696.1| Predicted GTPase [Lactobacillus rhamnosus HN001]
gi|257148330|emb|CAR87303.1| GTP-binding protein [Lactobacillus rhamnosus GG]
gi|259649718|dbj|BAI41880.1| putative GTPase [Lactobacillus rhamnosus GG]
Length = 285
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A + ++ ++K DL++EV D+R P SS +P L + K R+I LNK+DL
Sbjct: 3 IQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + N+WVR++ + IAI+A +Q++ + + E I+R+ P +
Sbjct: 63 ADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + + A G PGVT++ K + + +
Sbjct: 123 AMCIGIPNVGKSTVLNRL-----------VRKNIAVTGNKPGVTKNQQWLKASD--NFQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 170 LDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGL 210
>gi|418568992|ref|ZP_13133332.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
gi|371978177|gb|EHO95427.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21272]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGENLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|365904024|ref|ZP_09441783.1| GTP-binding protein, GTPase [Lactobacillus versmoldensis KCTC 3814]
Length = 284
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHM A ++ RLK+ D+V+E+ D+R+P SS +P L+ ++ K+ +I LNK DL
Sbjct: 3 LQWYPGHMNKAKNQVQDRLKVVDIVLEIVDARLPYSSRNPVLEQIINQKKHIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+P + + W+ + I ++A + + KL L+ +L + I++ +
Sbjct: 63 ADPKLTSDWILSYQQEGTAAIEVDAKHDTKLTKLNNLIRSELSDKIAKYERNGVKNFQIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS ++N + K A G PGVT++ K + I +
Sbjct: 123 AMCIGIPNVGKSTILNKM-----------VGKKVAVTGNKPGVTKNQNWLKTDY--GIDL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P I D + G+KLALSG+IKD + + +A Y L L
Sbjct: 170 LDTPGILWPKISDPKVGMKLALSGAIKDKIYPPDDVAIYALDFL 213
>gi|57651812|ref|YP_186118.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
COL]
gi|87162211|ref|YP_493833.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194951|ref|YP_499751.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151221365|ref|YP_001332187.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509409|ref|YP_001575068.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142033|ref|ZP_03566526.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258452542|ref|ZP_05700548.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|262048141|ref|ZP_06021028.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262051870|ref|ZP_06024086.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|269202859|ref|YP_003282128.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|282920027|ref|ZP_06327756.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|284024236|ref|ZP_06378634.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
132]
gi|294848238|ref|ZP_06788985.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|296274800|ref|ZP_06857307.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MR1]
gi|304381193|ref|ZP_07363846.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014434|ref|YP_005290670.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|384869777|ref|YP_005752491.1| GTP-binding protein [Staphylococcus aureus subsp. aureus T0131]
gi|386728926|ref|YP_006195309.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387142852|ref|YP_005731245.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|387602518|ref|YP_005734039.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|404478583|ref|YP_006710013.1| GTPase protein [Staphylococcus aureus 08BA02176]
gi|415686433|ref|ZP_11450522.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|417648959|ref|ZP_12298771.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|418281427|ref|ZP_12894238.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|418286379|ref|ZP_12899025.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|418309862|ref|ZP_12921413.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|418317684|ref|ZP_12929100.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|418570773|ref|ZP_13135034.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|418579074|ref|ZP_13143169.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418649313|ref|ZP_13211341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|418658317|ref|ZP_13220049.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873497|ref|ZP_13427792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|418886504|ref|ZP_13440652.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418903452|ref|ZP_13457493.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906178|ref|ZP_13460205.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911850|ref|ZP_13465833.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|418925476|ref|ZP_13479378.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928500|ref|ZP_13482386.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418948218|ref|ZP_13500538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|418955486|ref|ZP_13507426.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|418980052|ref|ZP_13527840.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|419774366|ref|ZP_14300336.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|421150193|ref|ZP_15609849.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742360|ref|ZP_16796366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745526|ref|ZP_16799465.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785073|ref|ZP_18211876.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|440706067|ref|ZP_20886816.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|440734689|ref|ZP_20914301.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443639731|ref|ZP_21123732.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
gi|57285998|gb|AAW38092.1| GTP-binding protein, putative [Staphylococcus aureus subsp. aureus
COL]
gi|87128185|gb|ABD22699.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202509|gb|ABD30319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374165|dbj|BAF67425.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368218|gb|ABX29189.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859760|gb|EEV82602.1| ribosomal biogenesis GTPase [Staphylococcus aureus A5948]
gi|259160271|gb|EEW45299.1| hypothetical protein SA930_1420 [Staphylococcus aureus 930918-3]
gi|259163707|gb|EEW48262.1| hypothetical protein SAD30_1917 [Staphylococcus aureus D30]
gi|262075149|gb|ACY11122.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
ED98]
gi|269940735|emb|CBI49116.1| putative GTPase protein [Staphylococcus aureus subsp. aureus TW20]
gi|282594743|gb|EFB99727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9765]
gi|283470456|emb|CAQ49667.1| GTPase family [Staphylococcus aureus subsp. aureus ST398]
gi|294825038|gb|EFG41460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9754]
gi|304340176|gb|EFM06117.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315198483|gb|EFU28812.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140941|gb|EFW32788.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144344|gb|EFW36110.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329313912|gb|AEB88325.1| Possible GTP-binding protein [Staphylococcus aureus subsp. aureus
T0131]
gi|329728952|gb|EGG65366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21189]
gi|365165249|gb|EHM57077.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21178]
gi|365167087|gb|EHM58563.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21209]
gi|365237985|gb|EHM78824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21331]
gi|365244952|gb|EHM85604.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21232]
gi|371982953|gb|EHP00101.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21283]
gi|374363131|gb|AEZ37236.1| GTPase YlqF [Staphylococcus aureus subsp. aureus VC40]
gi|375029686|gb|EHS23011.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-91]
gi|375038869|gb|EHS31824.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366034|gb|EHS70046.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-125]
gi|375370969|gb|EHS74761.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-189]
gi|375373165|gb|EHS76862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-157]
gi|377697101|gb|EHT21456.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377725228|gb|EHT49343.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725457|gb|EHT49570.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377738412|gb|EHT62421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742467|gb|EHT66452.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744545|gb|EHT68522.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765478|gb|EHT89328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|379992215|gb|EIA13672.1| GTP-binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|383971892|gb|EID87954.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230219|gb|AFH69466.1| GTP-binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|394329583|gb|EJE55685.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|404440072|gb|AFR73265.1| putative GTPase protein [Staphylococcus aureus 08BA02176]
gi|421956483|gb|EKU08812.1| 50S ribosomal subunit maturation GTPase [Staphylococcus aureus
CN79]
gi|436431717|gb|ELP29070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507598|gb|ELP43278.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21282]
gi|443406382|gb|ELS64962.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21196]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|253733519|ref|ZP_04867684.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|417898523|ref|ZP_12542443.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
gi|253728573|gb|EES97302.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|341848556|gb|EGS89719.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21259]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|153954033|ref|YP_001394798.1| ribosomal biogenesis GTPase [Clostridium kluyveri DSM 555]
gi|219854647|ref|YP_002471769.1| hypothetical protein CKR_1304 [Clostridium kluyveri NBRC 12016]
gi|146346914|gb|EDK33450.1| Predicted GTP-binding protein [Clostridium kluyveri DSM 555]
gi|219568371|dbj|BAH06355.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 280
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 21/249 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK+ D+V+E+RD+RI +S +P ++ +K R+I LNK DL
Sbjct: 3 INWFPGHMARTKREIKENLKLVDVVVEIRDARIIKASKNPDIESICGSKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+ +I +W+ + +A+N ++ R + +LLE ++K+ +
Sbjct: 63 SEESITKQWISYLLEDNVRVLAVNCNTGQGLKSIRPMLNELLEEKHNRMKKKGVAKIVDR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS+ IN + K+ A +G PGVT+ K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKMA-----------KSSIAKIGDRPGVTKSKQWIK--TKLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
+DTPG+L P + ET L LA +G+IKD ++ E +A LL VL R P +
Sbjct: 170 MDTPGILWPKLESEETQLNLAFTGAIKDEIMDIENLALMLLKVL-CRDYPDRVINRYKLD 228
Query: 258 EVSQSETEN 266
E+S+ EN
Sbjct: 229 ELSEEPLEN 237
>gi|421860563|ref|ZP_16292669.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410829749|dbj|GAC43106.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 296
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R I+ +LK+ D+ IE+ D+R+P+SS +P + L K R+I LNK DL
Sbjct: 3 IQWFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMIGDILQNKPRLILLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P++ +W++ F +AI+A + ++V ++ L+E I R+ +
Sbjct: 63 ADPDMNAQWLQAFRGEGHAALAIDASTGTNVAQIPGEARKLLEEKIQRQLAKGMKPRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + ++ A G PG+T+ K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINKLAGRSV-----------AATGDRPGITKGQQWIKVGF--EMEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G +LA +G+IKD ++ E IA Y++ L
Sbjct: 170 LDTPGILWPKFEDQEVGYRLAATGAIKDEILNVEEIAFYVIKQL 213
>gi|359403592|ref|ZP_09196496.1| GTP-binding protein [Spiroplasma melliferum KC3]
gi|438119591|ref|ZP_20871711.1| ribosomal biogenesis GTPase [Spiroplasma melliferum IPMB4A]
gi|358832823|gb|EHK51927.1| GTP-binding protein [Spiroplasma melliferum KC3]
gi|434155339|gb|ELL44292.1| ribosomal biogenesis GTPase [Spiroplasma melliferum IPMB4A]
Length = 296
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 127/218 (58%), Gaps = 20/218 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI+WFPGHMA A + I + K+ DLVIE+ DSRIP SS++P + K ++I LNKKD
Sbjct: 4 NIHWFPGHMAKAIKQIDEQSKLIDLVIEIVDSRIPFSSSNPLVDNLRGLKPKLIILNKKD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P ++ W+ ++ S + + +++ + + ++E + L I R+ P L
Sbjct: 64 LADPVVIKAWLEYYQSQQIAVLPLDSKHGNITKLIIEKIYHVLSGKIERDQNRGIKSPKL 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMV+G+PNVGKS IN++ ++ + R VG PGVT+ K+ H+ I
Sbjct: 124 KVMVIGIPNVGKSTFINAL---------IKRNSTR--VGNKPGVTKGQQWLKLNHQ--ID 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
++DTPG+L P I D + + LA + SIK+ ++ +E I
Sbjct: 171 LVDTPGILWPKINDPQVAINLAFTRSIKEDILPKEEIC 208
>gi|282918942|ref|ZP_06326677.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
gi|282316752|gb|EFB47126.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C427]
Length = 294
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|414155585|ref|ZP_11411896.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
gi|410872810|gb|EKS20749.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0442]
Length = 283
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGEKPKLMILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 62 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEEVALKLALTGAIKDQLL 201
>gi|403383360|ref|ZP_10925417.1| hypothetical protein KJC30_01635 [Kurthia sp. JC30]
Length = 284
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + LK+ D+V E+ D+R+P+SS +P L + K R++ LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTENLKLVDIVFELIDARLPMSSRNPMLDDIIHQKNRLLILNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ KW+ +F S +A+N+ ++++ + E L E R +
Sbjct: 63 ADEAQTKKWINYFASKGHKAVAVNSLDSKGLKRVTKAAEEVLAEKWERMRKKGLKTRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS +IN + + ++R G +PGVT+ K+ + +
Sbjct: 123 AMIVGIPNVGKSTMINRLAKKNVAR-----------TGNMPGVTRSQQWIKVGK--ELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KLA++G+IKD ++ + +A + L L
Sbjct: 170 LDTPGILWPKFEDQNVGYKLAVTGAIKDQIMNMDDLAIFGLNFL 213
>gi|253731862|ref|ZP_04866027.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724272|gb|EES93001.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|417901371|ref|ZP_12545247.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|418599669|ref|ZP_13163149.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
gi|341845210|gb|EGS86412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21266]
gi|374396327|gb|EHQ67568.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21343]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|291527942|emb|CBK93528.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium rectale
M104/1]
Length = 281
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 24/245 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R+I +NK D
Sbjct: 2 NFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W F ++++A S+S ++ + ++V KE I R+ +
Sbjct: 62 LADKERTREWSAFFKEKGFFVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ S+
Sbjct: 122 RAMVVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRLNK--SVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D GL+LAL GSIKD ++ + +A L+ L L L R
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGL----LAQR 224
Query: 257 TEVSQ 261
EVS+
Sbjct: 225 YEVSE 229
>gi|384045195|ref|YP_005493212.1| GTPase family protein [Bacillus megaterium WSH-002]
gi|345442886|gb|AEN87903.1| GTPase family protein [Bacillus megaterium WSH-002]
Length = 288
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 27/247 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPT 135
A+P + +W+ ++ +AI+A + +++++ EL++ K + + +
Sbjct: 62 KADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + K A G PGVTQ K+ + +
Sbjct: 122 IRAMIVGIPNVGKSTLINRLAS-----------KKIAKTGDRPGVTQAQQWIKVGN--EL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW-RHLN 254
+LDTPG+L P D G KLA +G+IKD+++ + +A Y L L++ H+ L
Sbjct: 169 ELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFLSS-----HYPEQLK 223
Query: 255 NRTEVSQ 261
R ++S+
Sbjct: 224 QRYDLSE 230
>gi|295706299|ref|YP_003599374.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
gi|338819264|sp|D5DJL5.1|RBGA_BACMD RecName: Full=Ribosome biogenesis GTPase A
gi|294803958|gb|ADF41024.1| ribosome biogenesis GTPase A [Bacillus megaterium DSM 319]
Length = 288
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 22/250 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPT 135
A+P + +W+ ++ +AI+A + +++++ EL++ K + + +
Sbjct: 62 KADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + K A G PGVTQ K+ + +
Sbjct: 122 IRAMIVGIPNVGKSTLINRLAS-----------KKIAKTGDRPGVTQAQQWIKVGN--EL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D G KLA +G+IKD+++ + +A Y L L T P + N
Sbjct: 169 ELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFL-TSHYPEQLKQRYN 227
Query: 256 RTEVSQSETE 265
E+ + E
Sbjct: 228 LNEIPEDIVE 237
>gi|110004282|emb|CAK98620.1| putative gtp binding protein [Spiroplasma citri]
Length = 296
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 127/218 (58%), Gaps = 20/218 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI+WFPGHMA A + I + K+ DLVIE+ DSRIP SS++P + K ++I LNKKD
Sbjct: 4 NIHWFPGHMAKAIKQIDEQSKLIDLVIEIVDSRIPFSSSNPLVDNLRGLKPKLIILNKKD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P ++ W+ ++ S + + +++ + + ++E + L I R+ P L
Sbjct: 64 LADPVVIKAWLEYYQSQQIAVLPLDSKHGNITKLIIEKIYHVLSGKIERDQNRGIKSPKL 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMV+G+PNVGKS IN++ ++ + R VG PGVT+ K+ H+ I
Sbjct: 124 KVMVIGIPNVGKSTFINAL---------IKRNSTR--VGNKPGVTKGQQWLKLNHQ--ID 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
++DTPG+L P I D + + LA + SIK+ ++ +E I
Sbjct: 171 LVDTPGILWPKINDPQVAINLAFTRSIKEDILPKEEIC 208
>gi|385781471|ref|YP_005757642.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|418572280|ref|ZP_13136492.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
gi|364522460|gb|AEW65210.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371984764|gb|EHP01873.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21333]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|395755858|ref|XP_002833652.2| PREDICTED: mitochondrial GTPase 1-like isoform 1 [Pongo abelii]
Length = 210
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 20/210 (9%)
Query: 43 LKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDS-CK 101
LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+ K ++H +
Sbjct: 5 LKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIMQHLEGEGL 64
Query: 102 QDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLLVMVVGVPNVGKSALIN 153
++ I N +V++++ +V E+I R +MV+GVPNVGKS+LIN
Sbjct: 65 KNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRRENLEYCIMVIGVPNVGKSSLIN 120
Query: 154 SIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGVLVPSIPDIE 212
S+ + L K K VG PG+T+ + + +++ RP +++LDTPGVL P I +E
Sbjct: 121 SLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLLFLLDTPGVLAPRIESVE 174
Query: 213 TGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 175 TGLKLALCGTVLDHLVGEETMADYLLYTLN 204
>gi|21282855|ref|NP_645943.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486082|ref|YP_043303.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208111|ref|ZP_06924542.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912192|ref|ZP_07129635.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|418317166|ref|ZP_12928590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|418321912|ref|ZP_12933251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875179|ref|ZP_13429439.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934145|ref|ZP_13487968.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988064|ref|ZP_13535737.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741760|ref|ZP_21723717.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|448743315|ref|ZP_21725224.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
gi|21204294|dbj|BAB94991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244525|emb|CAG42954.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887354|gb|EFH26256.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886438|gb|EFK81640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH70]
gi|365224527|gb|EHM65792.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus VCU006]
gi|365239538|gb|EHM80340.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21340]
gi|377719852|gb|EHT44022.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770239|gb|EHT94001.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770888|gb|EHT94647.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547398|gb|ELY15667.1| ribosomal biogenesis GTPase [Staphylococcus aureus KT/314250]
gi|445563244|gb|ELY19406.1| Ribosomal Biogenesis GTPase [Staphylococcus aureus KT/Y21]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|49483406|ref|YP_040630.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425297|ref|ZP_05601722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427957|ref|ZP_05604355.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430590|ref|ZP_05606972.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257433351|ref|ZP_05609709.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436193|ref|ZP_05612240.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282903798|ref|ZP_06311686.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|282905561|ref|ZP_06313416.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908536|ref|ZP_06316366.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910815|ref|ZP_06318618.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914020|ref|ZP_06321807.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282924065|ref|ZP_06331741.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|283770306|ref|ZP_06343198.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283957986|ref|ZP_06375437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501051|ref|ZP_06666902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510013|ref|ZP_06668721.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|293526600|ref|ZP_06671285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|295427730|ref|ZP_06820362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297591312|ref|ZP_06949950.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|379020952|ref|YP_005297614.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|384547487|ref|YP_005736740.1| GTP-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|384867874|ref|YP_005748070.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|386830778|ref|YP_006237432.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387780352|ref|YP_005755150.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415683834|ref|ZP_11449036.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|416839290|ref|ZP_11902684.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|416847454|ref|ZP_11907176.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|417653182|ref|ZP_12302916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|417797222|ref|ZP_12444420.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|417797958|ref|ZP_12445144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|417887003|ref|ZP_12531142.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|417903355|ref|ZP_12547202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|418283063|ref|ZP_12895820.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|418312742|ref|ZP_12924251.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|418561434|ref|ZP_13125925.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|418566592|ref|ZP_13130965.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|418582077|ref|ZP_13146155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597655|ref|ZP_13161177.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|418603088|ref|ZP_13166479.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|418655687|ref|ZP_13217531.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|418891876|ref|ZP_13445991.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897780|ref|ZP_13451850.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900650|ref|ZP_13454707.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908954|ref|ZP_13462957.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917038|ref|ZP_13470997.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922825|ref|ZP_13476742.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418950552|ref|ZP_13502716.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|418982156|ref|ZP_13529864.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985824|ref|ZP_13533510.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49241535|emb|CAG40221.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271754|gb|EEV03892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274798|gb|EEV06285.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278718|gb|EEV09337.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257281444|gb|EEV11581.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257284475|gb|EEV14595.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M876]
gi|282314037|gb|EFB44429.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C101]
gi|282322088|gb|EFB52412.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M899]
gi|282325420|gb|EFB55729.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327598|gb|EFB57881.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330853|gb|EFB60367.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595416|gb|EFC00380.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus C160]
gi|283460453|gb|EFC07543.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
H19]
gi|283790135|gb|EFC28952.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920672|gb|EFD97735.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M1015]
gi|291096056|gb|EFE26317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466957|gb|EFF09475.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus M809]
gi|295128088|gb|EFG57722.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576198|gb|EFH94914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus MN8]
gi|298694536|gb|ADI97758.1| probable GTP-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|312438379|gb|ADQ77450.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194132|gb|EFU24525.1| ribosomal biogenesis GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|323441021|gb|EGA98728.1| ribosomal biogenesis GTPase [Staphylococcus aureus O11]
gi|323442338|gb|EGA99968.1| ribosomal biogenesis GTPase [Staphylococcus aureus O46]
gi|329733564|gb|EGG69892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21193]
gi|334267270|gb|EGL85734.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21305]
gi|334277080|gb|EGL95319.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21310]
gi|341849976|gb|EGS91109.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21269]
gi|341858425|gb|EGS99215.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21195]
gi|344177454|emb|CCC87922.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830261|gb|AEV78239.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus aureus
subsp. aureus M013]
gi|365168660|gb|EHM59998.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21202]
gi|365238387|gb|EHM79224.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21334]
gi|371969862|gb|EHO87300.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21264]
gi|371977645|gb|EHO94909.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21262]
gi|374393717|gb|EHQ65021.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21342]
gi|374393817|gb|EHQ65120.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21345]
gi|375035925|gb|EHS29019.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-105]
gi|375376724|gb|EHS80243.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-160]
gi|377703118|gb|EHT27434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704437|gb|EHT28746.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705642|gb|EHT29946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710487|gb|EHT34725.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731208|gb|EHT55265.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736148|gb|EHT60178.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750212|gb|EHT74150.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377753992|gb|EHT77902.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760815|gb|EHT84691.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|385196170|emb|CCG15791.1| putative GTPase protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 294
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|256750723|ref|ZP_05491608.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|256750306|gb|EEU63325.1| GTP-binding protein HSR1-related protein [Thermoanaerobacter
ethanolicus CCSD1]
Length = 277
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA + + I LK+ D+V E+ D+RIP SS +P + + K+R+I LNK DL
Sbjct: 2 IQWYPGHMAKSKKEIVSNLKLVDVVYEIVDARIPKSSRNPDIDDIVKNKKRLILLNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLLV 138
A+ I + W+ F + + +N+ + ++++ E + ++++ R+ P L
Sbjct: 62 ADDVITDLWIEFFKGKGIEAVKVNSITGFGLKEINEATKRVCQDILERKKQKGMIPRLRG 121
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
++VGVPNVGKS IN + +KRA G PGVT+ + K P +L
Sbjct: 122 IIVGVPNVGKSTFINKLIG-----------SKRAKTGDKPGVTRTLHWIKT---PYFDLL 167
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPG+L P D + G+ LA++G+IKD ++ E IA L+A+L
Sbjct: 168 DTPGILWPKFDDKKVGIMLAITGAIKDEILDIEEIALNLVAIL 210
>gi|258423916|ref|ZP_05686801.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|417891835|ref|ZP_12535892.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|418308711|ref|ZP_12920317.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|418559226|ref|ZP_13123772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|418889035|ref|ZP_13443171.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418993863|ref|ZP_13541499.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|257845945|gb|EEV69974.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
A9635]
gi|341851121|gb|EGS92050.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21200]
gi|365237737|gb|EHM78580.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21194]
gi|371975517|gb|EHO92811.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus 21252]
gi|377745913|gb|EHT69888.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754545|gb|EHT78454.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 294
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|28971414|emb|CAD70603.1| hypothetical protein [Bacillus megaterium]
Length = 361
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 22/250 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEV----ISREPT 135
A+P + +W+ ++ +AI+A + +++++ EL++ K + + +
Sbjct: 62 KADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + K A G PGVTQ K+ + +
Sbjct: 122 IRAMIVGIPNVGKSTLINRL-----------ASKKIAKTGDRPGVTQAQQWIKVGN--EL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D G KLA +G+IKD+++ + +A Y L L T P + N
Sbjct: 169 ELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFL-TSHYPEQLKQRYN 227
Query: 256 RTEVSQSETE 265
E+ + E
Sbjct: 228 LNEIPEDIVE 237
>gi|82750846|ref|YP_416587.1| ribosomal biogenesis GTPase [Staphylococcus aureus RF122]
gi|82656377|emb|CAI80796.1| probable GTP-binding protein [Staphylococcus aureus RF122]
Length = 294
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N ++KW + F ++++A +++K+ E RE +
Sbjct: 63 SNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|225019935|ref|ZP_03709127.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
gi|224947299|gb|EEG28508.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
DSM 5476]
Length = 356
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM R I+ L + D+V+E+ D+RIP SS +P L + K R++ LNK D
Sbjct: 67 SIQWFPGHMKKTERMIEKNLPLVDVVVEIIDARIPASSRNPVLDKLIQGKPRIVLLNKCD 126
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
+A+ N +WV +F S +AI+ + +++++ L+ L E+I + + +
Sbjct: 127 VADLNFTRRWVEYFQSVGIAALAIDCQTGKNLKQVQPLIRQVLVELIQKRASKGMSGRIV 186
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN + KRA V PGVT+ I + I
Sbjct: 187 RAMVVGIPNVGKSTFINKMA-----------GGKRAKVEDRPGVTRGKQWVHIDN--DID 233
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LD PGVL P D + G+ LA +G++KD VV E +A LL L+
Sbjct: 234 LLDMPGVLCPKFEDPQVGVHLAWTGAVKDDVVDVELLAMNLLEYLS 279
>gi|421277395|ref|ZP_15728215.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
gi|395876676|gb|EJG87752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SPAR10]
Length = 283
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +HF+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|322387851|ref|ZP_08061459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|419843911|ref|ZP_14367216.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|321141353|gb|EFX36850.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
gi|385702335|gb|EIG39480.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis ATCC 700779]
Length = 283
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +HF+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|418325821|ref|ZP_12937024.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
gi|365227567|gb|EHM68760.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU071]
Length = 287
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 22/241 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + RH N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYNIN 228
Query: 257 T 257
T
Sbjct: 229 T 229
>gi|337282013|ref|YP_004621484.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
gi|335369606|gb|AEH55556.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 15912]
Length = 286
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 5 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKV 64
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 65 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 125 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E LKLAL+G+IKD ++
Sbjct: 172 EILDTPGILWPKFEDEEVALKLALTGAIKDQLL 204
>gi|295396863|ref|ZP_06806991.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
gi|294974889|gb|EFG50588.1| ribosome biogenesis GTP-binding protein YlqF [Aerococcus viridans
ATCC 11563]
Length = 291
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
+I W+PGHMA A + ++ +L D+V+E+RD+RIP +S +P L + KR +I LNK+
Sbjct: 2 AHIQWYPGHMAKAKKEVQSQLNAVDIVLEIRDARIPTASMNPMLDEIIKNKRHMIVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPT 135
DLA+P +WV+ + IA+++ R +++ + ++ K + +
Sbjct: 62 DLADPQQTKEWVKALSGENKLAIALDSKKLGDMKIFRQALKDFTQDIQDKWRNKGILHKS 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ VMV+G+PNVGKS IN K K+A VG PGVT+ KI
Sbjct: 122 IRVMVIGIPNVGKSTFINQF-----------TKQKKAQVGNKPGVTKGQQWIKIDK--DF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E KLAL+G IKD+ ++ +A + L
Sbjct: 169 ELLDTPGILWPKFEDQEVADKLALTGGIKDTHFYKDDVALFALEFF 214
>gi|210622539|ref|ZP_03293232.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
gi|210154174|gb|EEA85180.1| hypothetical protein CLOHIR_01180 [Clostridium hiranonis DSM 13275]
Length = 297
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 26/228 (11%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM +K LK+ D+V+E+ DSRIP SS +P + ++ K RV+ LNK D
Sbjct: 15 NINWYPGHMKKTKDLMKANLKLVDVVVELLDSRIPYSSKNPDIDTLMAGKPRVVLLNKSD 74
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK---------LKEVISREP 134
+++ LNKW+ ++ I I+A + V ++++ E K LKE +E
Sbjct: 75 ISDRAKLNKWINYYKEQGIKAIPIDAMKGTGVNRIVD--ECKNAVKDKMDSLKEKGRKER 132
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRP 193
+ +M+VGVPNVGKS+LIN + +R+T G PGVT+ K+ R
Sbjct: 133 AIRIMIVGVPNVGKSSLINKLT------------GRRSTQTGDRPGVTKGKQWVKL--RG 178
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++ +LDTPG+L P D + L LA + +IKD ++ E +A L+ L
Sbjct: 179 NLELLDTPGILWPKFEDQDVALNLAFTRAIKDEILDVETLALRLIEKL 226
>gi|385260394|ref|ZP_10038542.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
gi|385191658|gb|EIF39071.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK140]
Length = 283
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +HF+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|417935868|ref|ZP_12579185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
gi|343402777|gb|EGV15282.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis X]
Length = 283
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +HF+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPALTKEWRQHFESQGIQTLAINSKEQITVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|227535119|ref|ZP_03965168.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187260|gb|EEI67327.1| GTP-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 286
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L L E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLLAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|403234817|ref|ZP_10913403.1| GTPase YlqF [Bacillus sp. 10403023]
Length = 280
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +L + D+V E+ D+RIP SS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLSLIDIVFELVDARIPASSRNPMIDEIIKNKPRLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
A+P + +W+ ++ +AIN+ + +++++ ++ L + R +
Sbjct: 62 KADPKVTKEWISYYKESGVHALAINSQAGEGMKQIVNEAKVILTDKFDKMAAKGIRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PG+T+ + K+ +
Sbjct: 122 RALIVGIPNVGKSTLINRLA-----------KKNIAQTGDRPGITKAQSWIKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GLKLA +G+IKD+++ + IA Y L L
Sbjct: 169 LLDTPGILWPKFEDQEVGLKLATTGAIKDTILNLQDIAVYALRFL 213
>gi|387879575|ref|YP_006309878.1| GTP-binding protein [Streptococcus parasanguinis FW213]
gi|386793028|gb|AFJ26063.1| GTP-binding protein [Streptococcus parasanguinis FW213]
Length = 291
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 10 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKV 69
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 70 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 129
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 130 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 176
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E LKLAL+G+IKD ++
Sbjct: 177 EILDTPGILWPKFEDEEVALKLALTGAIKDQLL 209
>gi|373452163|ref|ZP_09544081.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp.
3_1_31]
gi|371967595|gb|EHO85066.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium sp.
3_1_31]
Length = 286
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ ++K+ DLVIE+RD+RIP +S +P ++ + K R+I L+KKD
Sbjct: 8 IQWFPGHMTKAKREMQDKMKMVDLVIELRDARIPNASKNPMIEELIQQKPRLIILSKKDK 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR--EP-TLL 137
A+ I W++ + +A++ + + K+++ L++ K++ +I R +P +
Sbjct: 68 ADAAITKAWIQTLSNASTMVLALDIITENITPKIVKAVQTLMQAKIERMIRRGMKPRAMR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVGVPNVGKS IN I K K A G PGVT+ + KI + +
Sbjct: 128 AMVVGVPNVGKSTFINKIS-----------KKKIAVTGDRPGVTKSLQWSKINK--DLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D G+ LA++G+I+D ++ E IA + + L
Sbjct: 175 LDTPGVLWPKFEDERVGILLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|417917088|ref|ZP_12560650.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
gi|342830737|gb|EGU65062.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis SK236]
Length = 283
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 28/237 (11%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQDSLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKG 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 62 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKD--------SVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D E LKLAL+G+IKD ++ G ++ AVL R
Sbjct: 169 EILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVTIFGLNYFKEHYPAVLQER 225
>gi|419799417|ref|ZP_14324765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
gi|385698101|gb|EIG28487.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0449]
Length = 283
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 62 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEEVALKLALTGAIKDQLL 201
>gi|222153078|ref|YP_002562255.1| ribosomal biogenesis GTPase [Streptococcus uberis 0140J]
gi|222113891|emb|CAR42061.1| putative GTPase protein [Streptococcus uberis 0140J]
Length = 284
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGEKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ ++ +W R+++ +AIN+ +++V+K+ E + KLKE ++ +L
Sbjct: 64 ADQSLTKEWCRYYEEQGIKTLAINSKEQATVKKVTEAAKKLMAEKLQKLKERGIQKQSLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDEEVGLKLALTGAIKDQLL 201
>gi|355562898|gb|EHH19492.1| hypothetical protein EGK_20212, partial [Macaca mulatta]
gi|355783223|gb|EHH65144.1| hypothetical protein EGM_18499, partial [Macaca fascicularis]
Length = 297
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 20/216 (9%)
Query: 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH 96
+ +K LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+ K ++
Sbjct: 3 KKMKSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIMQR 62
Query: 97 FDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLLVMVVGVPNVG 147
+ ++ I N +V++++ +V E++ P +MV+GVPNVG
Sbjct: 63 LEGEGLKNVIFTNCLKDENVKQIIPMV----TELMGSSPRYHRGENLEYCIMVIGVPNVG 118
Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVP 206
KS+LINS+ + L K K A VG PG+T+ + +++ RP +++LDTPGVL P
Sbjct: 119 KSSLINSLRRQHL------RKGKAARVGGEPGITRAVMSRIQVSERPLMFLLDTPGVLAP 172
Query: 207 SIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 173 RIESVETGLKLALCGTVLDHLVGEETMADYLLFTLN 208
>gi|310658878|ref|YP_003936599.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
gi|308825656|emb|CBH21694.1| ribosomal biogenesis GTPase [[Clostridium] sticklandii]
Length = 328
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I +K+ D+V+E+ D+R P S+++P + + +V+ LNK+D
Sbjct: 45 NINWYPGHMKKTKEQILENIKLVDVVLEIVDARAPYSTSNPDIDDMVKNLPKVVVLNKED 104
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+ N +W+ ++ + + IN+ + + +LL + K K++ R+ L
Sbjct: 105 LADSNKTQQWIEYYKTKGHESAMINSLTGKGLNELLASLNNKSKDLYKKLESKGRRKRAL 164
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PNVGKS++IN I K A G PGVT+ K+ + +
Sbjct: 165 RVMVVGIPNVGKSSIINRIVG-----------KKSAQTGDRPGVTKGKQWVKL--KGDLE 211
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P I D +KLA GSIKD V+ E IA L+ L
Sbjct: 212 LLDTPGVLWPKIEDQSVAMKLAFLGSIKDQVMEIEEIAMELIKYL 256
>gi|421074171|ref|ZP_15535211.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
gi|392527677|gb|EIW50763.1| ribosome biogenesis GTP-binding protein YlqF [Pelosinus fermentans
JBW45]
Length = 286
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM A R I+ LK+ D+VIE+ D+RIP+SSA+P + L K RV+ALNK D
Sbjct: 5 NINWFPGHMTKALRMIQANLKLVDVVIELLDARIPVSSANPVIHQILEGKPRVVALNKID 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE----LKLKEVISR--EP-TL 136
LA P +WV F + I++ + + L+ VE K +++++ P +
Sbjct: 65 LAEPEWTKQWVDTFHVQGLQVVTIDSMTGKGTKALVSQVEQLGSAKAAKLVAKGVNPRAV 124
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN + TK PGVT+ I ++
Sbjct: 125 RAMILGIPNVGKSSLINRLL-----------GTKAVRTADKPGVTRGKQWITIGK--NLE 171
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D E G KLA++G+I D + E LL L
Sbjct: 172 LLDTPGVLWPKFEDPEVGFKLAMTGAINDDIYDVETAMSKLLLFL 216
>gi|374603429|ref|ZP_09676409.1| GTPase [Paenibacillus dendritiformis C454]
gi|374391025|gb|EHQ62367.1| GTPase [Paenibacillus dendritiformis C454]
Length = 296
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+ IE+ D+R+P+SS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRARRQIQEKLKLIDVAIELLDARLPMSSRNPMIGDILQHKPRLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W++ F +AI+A + ++V ++ L+E I R+ +
Sbjct: 62 LADPEMNARWLQAFRGEGHAALAIDASTGTNVAQIPGEARKLLEEKIQRQLAKGMKPRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + ++ A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINKLAGRSV-----------AATGDRPGVTKGQQWIKVGS--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G +LA +G+IKD ++ E IA Y + L
Sbjct: 169 LLDTPGILWPKFEDQEVGYRLAATGAIKDEILNVEDIAFYTIKQL 213
>gi|425736836|ref|ZP_18855112.1| GTPase YlqF [Staphylococcus massiliensis S46]
gi|425483308|gb|EKU50460.1| GTPase YlqF [Staphylococcus massiliensis S46]
Length = 288
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 20/237 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDDFIQHKPRVVILNKMDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N + KW F+ +A++A ++QK+ + KE +RE +
Sbjct: 63 SNLKEMEKWNTFFEDKGAFPVAVDAKHGKNLQKVEQAAIEATKEKFAREKEKGLRPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + A+ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKMAKRAI-----------AKTGNTPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
LDTPG+L P D G KL+++G+IKDS+V + +A Y L L H N
Sbjct: 170 LDTPGILWPKFEDQTIGKKLSITGAIKDSIVHLDDVAIYGLNFLIEHDKETLLNHFN 226
>gi|57866703|ref|YP_188393.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis RP62A]
gi|417647399|ref|ZP_12297239.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|418411664|ref|ZP_12984930.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
gi|418612108|ref|ZP_13175154.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|418626838|ref|ZP_13189434.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|420163419|ref|ZP_14670166.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|420167601|ref|ZP_14674253.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|420185451|ref|ZP_14691543.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|420211865|ref|ZP_14717221.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|420234404|ref|ZP_14738967.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|57637361|gb|AAW54149.1| GTP-binding protein, putative [Staphylococcus epidermidis RP62A]
gi|329724320|gb|EGG60832.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU144]
gi|374819990|gb|EHR84104.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU117]
gi|374831382|gb|EHR95124.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU126]
gi|394235108|gb|EJD80682.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM095]
gi|394237629|gb|EJD83115.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM087]
gi|394254437|gb|EJD99406.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM040]
gi|394280375|gb|EJE24656.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM001]
gi|394304207|gb|EJE47614.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051475]
gi|410891247|gb|EKS39044.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis BVS058A4]
Length = 287
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + RH N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYN 226
>gi|227824784|ref|ZP_03989616.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352683803|ref|YP_004895787.1| hypothetical protein Acin_0404 [Acidaminococcus intestini RyC-MR95]
gi|226905283|gb|EEH91201.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278457|gb|AEQ21647.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 290
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 22/229 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R ++ L++ D+V+E+ D+RIP +SA+P L+ + +K +++ALNK D
Sbjct: 11 TIQWFPGHMTKAKRQMESELRMVDVVVELLDARIPRASANPLLKGLIGSKVKIVALNKTD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE--------LVELKLKEVISREPT 135
+A+P W+ +F + ++ V+ LL +++ LK+ + P
Sbjct: 71 MADPLATKAWLTYFKEAGLKALEVDCQKGRGVKALLTAMREAGQPVIDKWLKKGVRNHP- 129
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +M+VG+PNVGKS LIN I + ++ Q + PGVT++ +I ++
Sbjct: 130 IRIMIVGIPNVGKSTLINRI--LGKNKAAAQNR---------PGVTRNTQWVEIGK--NL 176
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPGVL P +ETG LA++G+IK+ V E A LL L R
Sbjct: 177 ELLDTPGVLWPKFEKVETGFHLAVTGAIKEDVFDREMAASILLLRLKKR 225
>gi|322389595|ref|ZP_08063144.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
gi|321143721|gb|EFX39150.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis ATCC 903]
Length = 286
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 5 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKV 64
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 65 DLADPVATKEWQDYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 125 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E LKLAL+G+IKD ++
Sbjct: 172 EILDTPGILWPKFEDEEVALKLALTGAIKDQLL 204
>gi|229829014|ref|ZP_04455083.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
gi|229792177|gb|EEP28291.1| hypothetical protein GCWU000342_01099 [Shuttleworthia satelles DSM
14600]
Length = 281
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 24/220 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHM A R ++ +K+ DLVIE+ D+RIPL+S +P + K R+I LNK D
Sbjct: 2 NIQWFPGHMTKAKRQMQEDIKLIDLVIELLDARIPLASRNPEIDQLARDKARMILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHS---RSSVQK-LLELVELK----LKEVISREPT 135
L++P + ++W +F+ +A+++ S R +QK +++ E K L+ I P
Sbjct: 62 LSDPKMTSRWKEYFERQGMTVLALDSRSASLRKPMQKAIMDATEKKRARDLRRGIKNRP- 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPS 194
+ M+ G+PNVGKS LINS+ A +R G PGVT+ G + H R +
Sbjct: 121 VRAMIAGIPNVGKSTLINSLAGRAAAR-----------TGNKPGVTK---GKQWIHLRDN 166
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
I +LDTPG+L P D ETG+ LA+ G+I D V+ E ++
Sbjct: 167 IDLLDTPGILWPKFEDQETGIHLAMIGAISDHVLQVEDLS 206
>gi|260893263|ref|YP_003239360.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
gi|260865404|gb|ACX52510.1| ribosome biogenesis GTP-binding protein YlqF [Ammonifex degensii
KC4]
Length = 271
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+++W+PGHM A R ++ L + +V E+ D+RIP SS +P + L+ K RV+ LNK+D
Sbjct: 2 SLHWYPGHMVKARRLLRAHLPLVQVVFELLDARIPYSSRNPDIAELLAGKPRVVVLNKED 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
LA+P W+ + + +A+N+ + + KL E + K R L MVVG+
Sbjct: 62 LADPQATRAWLAYLEREGHPALAVNSLTGKGLNKLEEALRRVAKP--GRTGILRGMVVGI 119
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS+ IN + + + A VG PGVT+ K+ P+ +LDTPGV
Sbjct: 120 PNVGKSSFINRL-----------VRGRAAAVGAKPGVTKGKQWIKVT--PNFELLDTPGV 166
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYL 237
L P D E GLKLA++G++K+ V+ E A +L
Sbjct: 167 LWPRFEDPEVGLKLAVTGALKEEVIDVEAAALWL 200
>gi|295115828|emb|CBL36675.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SM4/1]
Length = 292
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 121/237 (51%), Gaps = 25/237 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PL S +P + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARMPLGSRNPDIDELAKGKGRMVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + +W F I INA + ++++ +V+ +E I R+ +
Sbjct: 62 LADERMNEQWTSWFKERGFHVIKINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNR--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
+LDTPG+L P D GL LA GSI D ++ + +A L L T H+R +
Sbjct: 169 LLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKTELAAELADFLMT-----HYREM 220
>gi|421490766|ref|ZP_15938133.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
gi|400371763|gb|EJP24712.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
anginosus SK1138]
Length = 283
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+ + IN+ +S+V+K E + +KE I+R+ T
Sbjct: 62 DLADPALTKEWRNYFEKKGVKTLPINSKEQSTVKKFTEAAQSLMKEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ K ++R +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVTGNKPGVTKGQQWLK-SNR-DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEKVALKLALTGAIKDDLL 201
>gi|182416692|ref|ZP_02948093.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237667586|ref|ZP_04527570.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182379454|gb|EDT76947.1| GTP-binding protein [Clostridium butyricum 5521]
gi|237655934|gb|EEP53490.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 293
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 120/229 (52%), Gaps = 30/229 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R IK LK+ D VIE+RD+RIP SSA+P + L K R+I LNK DL
Sbjct: 3 INWFPGHMRKTQREIKENLKLVDAVIEIRDARIPRSSANPDIDKLLEGKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ----KLLELVELK--------LKEVISR 132
+ + +W+ + + + +N ++ LL L++ K + ++I+R
Sbjct: 63 TDSKVTKEWIDYLTNDNVKVLEVNCLKGEGLKAIKPALLNLLKEKHDRLKAKGMAKIITR 122
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
VMVVG+PNVGKS IN + + + A G PGVT+ K A
Sbjct: 123 -----VMVVGIPNVGKSTFINKMARNNI-----------AKTGDRPGVTKSKQWIKTAI- 165
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
I +LDTPGVL P D T L LA +G+IKD ++ E +A L+ L
Sbjct: 166 -GIELLDTPGVLWPKFEDDTTALNLAFTGAIKDEIMDIEELALKLVERL 213
>gi|417983479|ref|ZP_12624116.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|417986759|ref|ZP_12627324.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|417992910|ref|ZP_12633262.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|417996266|ref|ZP_12636547.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|417999094|ref|ZP_12639307.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|418002043|ref|ZP_12642170.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|418015272|ref|ZP_12654847.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
gi|410524493|gb|EKP99401.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 32G]
gi|410528226|gb|EKQ03085.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 21/1]
gi|410532701|gb|EKQ07403.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei CRF28]
gi|410535577|gb|EKQ10194.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei M36]
gi|410540034|gb|EKQ14556.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
T71499]
gi|410545194|gb|EKQ19499.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
UCD174]
gi|410551748|gb|EKQ25791.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
Lpc-37]
Length = 286
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|392989833|ref|YP_006488426.1| GTPase [Enterococcus hirae ATCC 9790]
gi|392337253|gb|AFM71535.1| GTPase [Enterococcus hirae ATCC 9790]
Length = 286
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQTYFQQQGHQALAITAQESKGIKALIPEAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ ++ +
Sbjct: 122 RAMVLGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRLGS--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|328770282|gb|EGF80324.1| hypothetical protein BATDEDRAFT_35054 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 172/370 (46%), Gaps = 57/370 (15%)
Query: 15 EMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
E +TK I W+P H A + +K+ + DLV+EVRD+RIPL+S + L+ +
Sbjct: 53 EFQYTKP---IFWYPSHQTKALQQLKNGIHHIDLVVEVRDARIPLTSINHQFDHFLANRE 109
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQ----DYIAINAHSRSSVQKLLELVELKLKEVI 130
R++ NK DLAN N+ + D+ KQ D + A++ +K+L+ K +E
Sbjct: 110 RIVVYNKADLANANMRKPLI---DALKQYRNEDIVFTCANTGLHAKKVLQRAIDKCRENP 166
Query: 131 SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKI 189
R P + ++VVG+PNVGKS+LIN++ ++ ++ K K VG + GVT I KI
Sbjct: 167 ERFPYISMIVVGIPNVGKSSLINALRRLGVN------KGKVTAVGKIAGVTTAIQTRVKI 220
Query: 190 AHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLH 249
P IY++DTPG+ P + GLK++L+G +D + E IA YLL LNT
Sbjct: 221 YEDPPIYLVDTPGIYDPHVASPMEGLKISLTGGTRDRLTQEIHIADYLLFRLNTSSNIKK 280
Query: 250 WRH-LNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSL-- 306
+ L Q ++ KH K +R R +++
Sbjct: 281 YPAVLGLEHPTDQIDSVLKHICRTKGFLLNKRG------------------RLFNLTANT 322
Query: 307 ----SEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGP 362
SE D D+ + +I F + RA AR M+ K +R G GP
Sbjct: 323 GSFPSEVDETTPDDPEHPKIIPDSFLDIDRA---------ARYMLDK-----YREGLFGP 368
Query: 363 FILDDV-PDA 371
LDD PD
Sbjct: 369 MTLDDCSPDG 378
>gi|452974492|gb|EME74312.1| GTPase YlqF [Bacillus sonorensis L12]
Length = 282
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ + N+W +HF++ +AIN+ + + ++L EL++ K ++ ++ +P +
Sbjct: 63 ADSAVTNEWKKHFEADGIPSLAINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINRLA-----------KKNIAKTGDRPGVTTAQQWVKVGK--ELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GLKLA +G+IKDS++ + +A + L L
Sbjct: 170 LDTPGILWPKFEDELVGLKLAATGAIKDSIINLQDVAVFGLRFL 213
>gi|421767749|ref|ZP_16204490.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
gi|407623705|gb|EKF50521.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus garvieae
DCC43]
Length = 285
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 20/214 (9%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK
Sbjct: 2 GVAIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP------- 134
DLA+ N + WV F+S +AIN+ + ++L + + + ++R
Sbjct: 62 ADLADRNAVKSWVEFFESQGIIALAINSKEAHTSKRLTVAAKTLMADKLARNAERGIQNS 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+L M+VG+PN GKS L+N + K A G PGVT+ +
Sbjct: 122 SLRTMIVGIPNAGKSTLMNRLA-----------GKKVAVTGNKPGVTKGQQWLRT--NKE 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+ +LDTPG+L P D + GLKLAL+G+IKD ++
Sbjct: 169 LEILDTPGILWPKFEDDQVGLKLALTGAIKDQLL 202
>gi|395842569|ref|XP_003794089.1| PREDICTED: mitochondrial GTPase 1 isoform 1 [Otolemur garnettii]
Length = 300
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA + +++ LK D V+EV D+RIPLS +P Q L K ++ LNK DLA+
Sbjct: 1 MAKGLKKMQNSLKRVDCVVEVHDARIPLSGRNPLFQETLGIKPHLLVLNKMDLADLTEKQ 60
Query: 92 KWVRHFDSCK-QDYIAINAHSRSSVQKLL----ELVELKLKEVISREPTLLVMVVGVPNV 146
K ++H + ++ I N ++++++ EL+ + +MV+GVPNV
Sbjct: 61 KIMQHLEGQGLKNVIFTNCVKDENIKQVIPMVTELIGNSCRYQRGENLDYCIMVIGVPNV 120
Query: 147 GKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLV 205
GKS+LINS+ + L K K VG PG+T+ + ++ RP +++LDTPGVL
Sbjct: 121 GKSSLINSLRRQHL------RKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLS 174
Query: 206 PSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
P I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 175 PRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 211
>gi|226313197|ref|YP_002773091.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
gi|226096145|dbj|BAH44587.1| ribosome biogenesis GTPase [Brevibacillus brevis NBRC 100599]
Length = 297
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + +S K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ ++W+ +F + I+A S V KL E+ + +++++ +
Sbjct: 62 LADERATDEWIAYFRKQGIRTLPIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS+LIN + K A G P VT+ K+ ++
Sbjct: 122 RIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA SG+IKD ++ +A ++++ +
Sbjct: 169 LLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVISYM 213
>gi|301066444|ref|YP_003788467.1| GTPase [Lactobacillus casei str. Zhang]
gi|300438851|gb|ADK18617.1| Predicted GTPase [Lactobacillus casei str. Zhang]
Length = 286
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|191638394|ref|YP_001987560.1| GTP-binding protein [Lactobacillus casei BL23]
gi|385820096|ref|YP_005856483.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|385823296|ref|YP_005859638.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|409997259|ref|YP_006751660.1| ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|418007989|ref|ZP_12647860.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
gi|190712696|emb|CAQ66702.1| GTP-binding protein [Lactobacillus casei BL23]
gi|327382423|gb|AEA53899.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
LC2W]
gi|327385623|gb|AEA57097.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus casei
BD-II]
gi|406358271|emb|CCK22541.1| Ribosome biogenesis GTPase A [Lactobacillus casei W56]
gi|410547748|gb|EKQ21974.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW4]
Length = 286
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|297587482|ref|ZP_06946126.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
gi|297574171|gb|EFH92891.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna ATCC
53516]
Length = 285
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 24/228 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHM A IK +K+ D+V+ + DSRI SS +P ++ L K ++I LNK
Sbjct: 4 NNINWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKM 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLELVELKLKEVISRE 133
D+A+P I W+ +F K++ A+ S++ + +K+LE V K+ +
Sbjct: 64 DMADPKITQNWINYF--AKKNITALPIDSKNGRNLDKIEPTAKKILEDVLANRKDKNIKS 121
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ +M+VG+PNVGKS +IN + + A G PGVT+ +I +
Sbjct: 122 EIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRSNQWIRIKGK- 169
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D E GL LA +G+IKD ++ EE +A L+ L
Sbjct: 170 -MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKL 216
>gi|398814561|ref|ZP_10573242.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
gi|398036830|gb|EJL30039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
BC25]
Length = 297
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + +S K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ ++W+ +F + I+A S V KL E+ + +++++ +
Sbjct: 62 LADERATDEWIAYFRKQGIRTLPIDALSGKGVSKLPEMCKELAADMLAKRSERGMQGRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS+LIN + K A G P VT+ K+ ++
Sbjct: 122 RIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA SG+IKD ++ +A ++++ +
Sbjct: 169 LLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVISYM 213
>gi|295094902|emb|CBK83993.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus sp.
ART55/1]
Length = 282
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R ++ +K+ D+VIE+ DSRIP SS +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKARRMMQEDIKLIDIVIELVDSRIPFSSKNPDIDELAKNKYRLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + KW ++ + INA ++ + +V+ KE I R+ +
Sbjct: 62 LADDAVTTKWENYYKNKDFAVAKINARDGMGMKSINNIVQEACKEKIERDRKRGIINRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS INS + A ++ VG PGVT+ ++ +I
Sbjct: 122 RAMIVGIPNVGKSTFINSYARKACTK-----------VGNKPGVTKGKQWIRLGK--NIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSI D ++ IA L+ L
Sbjct: 169 LLDTPGILWPKFDDEAVGLRLAFIGSINDEILSITDIAVELIKFL 213
>gi|363888720|ref|ZP_09316098.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
gi|361967341|gb|EHL20163.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM5]
Length = 285
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I +K+ +LV+E+ D+R P+SS +P + ++ K +++ L KKDL
Sbjct: 7 INWYPGHMKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV---------ISREPT 135
A+ + K++ ++ +A+NA +S + +L+ ++E ++KE I ++P
Sbjct: 67 ADEENIGKFISYYKEKGIKSVAVNATKKSGISQLINILE-QIKEENYQKNKAKGIIKKP- 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +M+VG+PNVGKS LIN I K A G +PG+T+ KI + I
Sbjct: 125 LRIMIVGIPNVGKSTLINQIIG-----------KKSAKTGNMPGITKSQQWLKI--KGDI 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I D T KLA GSI+D V+ E I + L
Sbjct: 172 ELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVIEIEDIYYEFIKFL 217
>gi|440780920|ref|ZP_20959391.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
gi|440221508|gb|ELP60713.1| GTPase YlqF [Clostridium pasteurianum DSM 525]
Length = 288
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 121/226 (53%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK+ D VIE+RDSRI SSA+P + K R+I LNK DL
Sbjct: 9 INWFPGHMAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEIDKICKDKPRIILLNKCDL 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLL--ELVELKLKEVISREPT 135
+ + +W+ +A+N+ + + + KLL ++ LK K VIS
Sbjct: 69 SEEKVTKEWINVLSKNNVKALAVNSLNGLGLNSIKGEIDKLLKEKIDRLKQKGVIS--VI 126
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ MVVG+PNVGKS+ IN + K A +G PGVT+ K + I
Sbjct: 127 IRAMVVGIPNVGKSSFINKMA-----------KNTAAKIGDKPGVTKSKQWIK--TKMGI 173
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++DTPGVL P + + GL LA +G+IKD ++ E +A L+ L
Sbjct: 174 ELMDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVEELALSLIERL 219
>gi|376261100|ref|YP_005147820.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
gi|373945094|gb|AEY66015.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
BNL1100]
Length = 292
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA R I LK+ D++IE+ D+RIP SS +P + ++ K R++A NK D
Sbjct: 2 NIQWFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLINNKPRLVAFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ I +W++ + D I IN+ + + ++ + E I R +
Sbjct: 62 LADDRISRQWIKWYADQGIDCILINSINGKGLNEIKARARELMSEKIERNKAKGKLFTPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+ IN I A A G PGVT+ +I +
Sbjct: 122 RTMVVGIPNVGKSSFINKIVGKAT-----------AVTGDRPGVTRGKQWIRINS--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G+ LA +G+IKD ++ +A LL
Sbjct: 169 LLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMELL 210
>gi|347525434|ref|YP_004832182.1| GTPase [Lactobacillus ruminis ATCC 27782]
gi|345284393|gb|AEN78246.1| GTP-binding protein, GTPase [Lactobacillus ruminis ATCC 27782]
Length = 284
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 29/225 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R +K L D+V+E+ D+R+P SS +P L+ L K+ +I L K DL
Sbjct: 4 IQWYPGHMAKALRQVKENLNAVDIVLELVDARLPESSRNPQLEELLQNKKSIIVLTKMDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-----------RE 133
A+P + +W+ +++ IA+N++ Q L +E K+KEV+ +
Sbjct: 64 ADPKLTREWIAYYEQNGHPAIAVNSN-----QGTLPAIEKKIKEVLKEKIAAKEARGIKN 118
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ M +G+PNVGKS L+N + K A VG PGVT+ K
Sbjct: 119 SRIKAMCIGIPNVGKSTLLNRLV-----------KKNVAIVGNKPGVTKAQQWLKAGS-- 165
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
S+ +LDTPG+L P D G KLAL+G++KD++ ++ +A Y L
Sbjct: 166 SLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKDDVALYEL 210
>gi|91086203|ref|XP_971754.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial
precursor (GTP-binding protein 7) [Tribolium castaneum]
gi|270010239|gb|EFA06687.1| hypothetical protein TcasGA2_TC009617 [Tribolium castaneum]
Length = 317
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 21/239 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM + ++H+L+ D +IEV D+RIP+S + + +S K ++ LNK D
Sbjct: 22 VRWFPGHMGRGLKQMQHKLRSIDCIIEVHDARIPISGRNTDFKYTISGIKPHILVLNKVD 81
Query: 84 LAN----PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI----SREPT 135
L + P+I N+ F++ + V+ L L + +K S+
Sbjct: 82 LIDKKLIPSIKNRLKNEFENVV--FTNCKDQQCKGVKTLFPLAQNLIKNSDRFNRSQAED 139
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPS 194
VM++GVPNVGKS+LIN++ R K VG PG+T+ + K++ P
Sbjct: 140 QCVMIIGVPNVGKSSLINAL------RVRNLHKGNATHVGATPGITRSVLTKIKMSEDPL 193
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
Y+LDTPG+L P I E GLKLAL +I+D +VGE IA YLL LN G H+ ++
Sbjct: 194 CYMLDTPGILTPKIESAEVGLKLALCATIQDHLVGEGVIADYLLFWLNKNG---HYNYV 249
>gi|323339886|ref|ZP_08080155.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|417974042|ref|ZP_12614866.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
gi|323092759|gb|EFZ35362.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus ruminis
ATCC 25644]
gi|346329497|gb|EGX97792.1| GTP-binding protein [Lactobacillus ruminis ATCC 25644]
Length = 284
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 33/252 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R +K L D+V+E+ D+R+P SS +P L+ L K+ +I L K DL
Sbjct: 4 IQWYPGHMAKALRQVKENLNAVDIVLELVDARLPESSRNPQLEELLQNKKSIIVLTKMDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-----------RE 133
A+P + +W+ +++ IA+N++ Q L +E K+KEV+ +
Sbjct: 64 ADPKLTREWIAYYEQNGHPAIAVNSN-----QGTLPAIEKKIKEVLKEKIAAKEARGIKN 118
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ M +G+PNVGKS L+N + K A VG PGVT+ K
Sbjct: 119 SRIKAMCIGIPNVGKSTLLNRLV-----------KKNVAIVGNKPGVTKAQQWLKAGS-- 165
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
S+ +LDTPG+L P D G KLAL+G++KD++ ++ +A Y L H + L
Sbjct: 166 SLLLLDTPGILWPKFEDPIVGKKLALTGAVKDTLYAKDDVALYELEYFVDN----HPQAL 221
Query: 254 NNRTEVSQSETE 265
R ++ +S+ +
Sbjct: 222 TERYKLDESDLD 233
>gi|223986425|ref|ZP_03636430.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
12042]
gi|223961621|gb|EEF66128.1| hypothetical protein HOLDEFILI_03742 [Holdemania filiformis DSM
12042]
Length = 281
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R ++ LK+ DLVIE+RD RIPLSS +P L + K R+I L+KKD
Sbjct: 2 TIQWFPGHMTKAKREMQENLKLVDLVIELRDCRIPLSSKNPMLDEIIQTKPRLIVLSKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
I +W+ IA + S V KL + + +KE I R P +
Sbjct: 62 KGEAEITQQWIEKLKDDTTLVIAADLLHDSFVPKLTQACKEVMKEKIERMIRRGIRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVGVPNVGKS +IN + K A PGVT+ + K+ +
Sbjct: 122 RAMVVGVPNVGKSTMINRLA-----------GKKIAQTADRPGVTRSLQWVKLNK--DVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P D G LAL+G+I+D ++ +E + Y L L+
Sbjct: 169 LLDTPGVLWPKFEDPTVGFHLALTGAIRDEILPKEEVVVYALKWLS 214
>gi|450164201|ref|ZP_21881202.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
gi|449242281|gb|EMC40879.1| ribosomal biogenesis GTPase [Streptococcus mutans B]
Length = 283
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E+ + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEVAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|363895220|ref|ZP_09322240.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
gi|361959977|gb|EHL13238.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium ACC19a]
Length = 285
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I +K+ +LV+E+ D+R P+SS +P + ++ K +++ L KKDL
Sbjct: 7 INWYPGHMKKTREEIVKNIKLVNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV---------ISREPT 135
A+ + K++ ++ +A+NA +S + +L+ ++E ++KE I ++P
Sbjct: 67 ADEENIGKFISYYKEKGIKSVAVNATKKSGISQLINILE-QIKEENYQKNKAKGIIKKP- 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +M+VG+PNVGKS LIN I K A G +PG+T+ KI + I
Sbjct: 125 LRIMIVGIPNVGKSTLINQIIG-----------KKSAKTGNMPGITKSQQWLKI--KGDI 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I D T KLA GSI+D V+ E I + L
Sbjct: 172 ELLDTPGILWPKIEDKFTAQKLAFLGSIRDQVIEIEDIYYEFIKFL 217
>gi|418324108|ref|ZP_12935359.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
gi|365227605|gb|EHM68797.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
pettenkoferi VCU012]
Length = 289
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 30/229 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVVQHKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA-HSRSSVQKLLELVELKLKEVIS-----------R 132
AN N L+KW HF + +A++A H RS L+ VE E +
Sbjct: 63 ANLNELDKWQEHFKAQGYYPVAVDAKHGRS-----LKKVEQAATEATKEKFEREKEKGLK 117
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
+ M+VG+PNVGKS LIN + + ++ A G PGVT+ K+
Sbjct: 118 PRAIRAMIVGIPNVGKSTLINKLAKKSI-----------AKTGNTPGVTKQQQWIKVGK- 165
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++ +LDTPG+L P D G KL+++G+IKDS+V + +A + L L
Sbjct: 166 -ALQLLDTPGILWPKFEDETVGKKLSITGAIKDSIVHLDEVAIFGLNFL 213
>gi|116494883|ref|YP_806617.1| GTPase [Lactobacillus casei ATCC 334]
gi|116105033|gb|ABJ70175.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus casei ATCC
334]
Length = 286
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQAIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|379795610|ref|YP_005325608.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872600|emb|CCE58939.1| putative GTPase protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 294
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + ++ K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
+N ++KW + F ++++A +++K+ E RE + +
Sbjct: 63 SNLKEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAMKATAEKFEREKSKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ + ++ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGN--ALQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|331269648|ref|YP_004396140.1| HSR1-like GTP-binding protein [Clostridium botulinum BKT015925]
gi|329126198|gb|AEB76143.1| GTP-binding protein, HSR1-related protein [Clostridium botulinum
BKT015925]
Length = 280
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK D+VIE+RD+RI SSA+P + K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRREIKENLKFVDIVIEIRDARIVKSSANPDIDDICKNKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + +W++ + ++N + + + ++ LK+ R T
Sbjct: 63 SEEKVTKEWIKKLSNEFIRVASVNCVTGKGLNSIKPMINDLLKQKHDRLRAKGVVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS+ IN + K A VG PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKMA-----------KNNTAKVGDKPGVTKNKQWIK--TKMGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D + GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPKFEDEQVGLNLAFTGAIKDEIMDIETLAFKLIGKL 213
>gi|302380886|ref|ZP_07269348.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
gi|302311264|gb|EFK93283.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
ACS-171-V-Col3]
Length = 285
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 24/228 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHM A IK +K+ D+V+ + DSRI SS +P ++ L K ++I LNK
Sbjct: 4 NNINWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKDKPQLILLNKM 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLELVELKLKEVISRE 133
D+A+P I W+ +F K++ A+ S++ + +K+LE V K+ +
Sbjct: 64 DMADPKITQNWINYF--AKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKS 121
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ +M+VG+PNVGKS +IN + + A G PGVT+ +I +
Sbjct: 122 EIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK- 169
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D E GL LA +G+IKD ++ EE +A L+ L
Sbjct: 170 -MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKL 216
>gi|386588114|ref|YP_006084515.1| GTP1/OBG protein [Streptococcus suis A7]
gi|354985275|gb|AER44173.1| GTP1/OBG protein [Streptococcus suis A7]
Length = 283
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +++V+K+ + + +KE I R + TL
Sbjct: 64 ADPVCTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKEKIERLRQRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|417938285|ref|ZP_12581583.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
gi|343391375|gb|EGV03950.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK970]
Length = 283
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIIGDKPRLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + E I+R+ T
Sbjct: 62 DLADPALTKEWRQYFESQGIQTLAINSKEQITVKVVTDAAKKLMAEKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|430870490|ref|ZP_19483258.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
gi|430558901|gb|ELA98293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1575]
Length = 286
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 141/287 (49%), Gaps = 33/287 (11%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L + ++NR
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGLDFF----ARYYSGRISNR 224
Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALH 303
+S + E L D+ KR Y ED G + +H
Sbjct: 225 YGLSIEQEEKLAPELLMDITAKR---------GYKEDYDRGSELVVH 262
>gi|389575883|ref|ZP_10165911.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
gi|389311368|gb|EIM56301.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium
cellulosolvens 6]
Length = 285
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 26/247 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R ++ LK+ DL+IE+ D+RIP S +P ++ + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKAKRQMQEDLKLIDLIIELIDARIPFSGRNPDIRTMGNGKARLIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
LA+ + KW+ ++ + +A +R S++++ L++ KE I R +
Sbjct: 62 LADERLNRKWMEYYKEQGAQVMLTDARNRGSLKQIQPLIQEACKEKIERNLRRGIKNKPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSI 195
MV G+PNVGKS INS+ A ++ G PGVT+ G + H +
Sbjct: 122 RAMVAGIPNVGKSTFINSVSGKASTK-----------TGNKPGVTK---GKQWIHLNKGL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D E G+++A GS+ D ++ E ++ L+ L R + + L
Sbjct: 168 DLLDTPGILWPRFDDPEAGVRMAFIGSVNDEILQLEELSLKLIEYLCERYSGV----LKE 223
Query: 256 RTEVSQS 262
R +V +S
Sbjct: 224 RYDVDES 230
>gi|237842815|ref|XP_002370705.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
gi|211968369|gb|EEB03565.1| GTPase domain-containing protein [Toxoplasma gondii ME49]
Length = 452
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 176/368 (47%), Gaps = 89/368 (24%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAK--RRVIALNK 81
+I WFP HM AT AI+ LK D V+EVRD+R PL+S + L +L+++ +R++ LNK
Sbjct: 117 SITWFPAHMNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLVVLNK 176
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAH------SRSSVQKLLELVELKLKEVISREPT 135
DL V D + + +A ++++ ++V+ L+ V + T
Sbjct: 177 ADL---------VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKVVDFALEHVQPKFKT 227
Query: 136 LLV--MVVGVPNVGKSALINSIHQIAL--SRF--PVQE-----KTKRATVGPLPGVTQDI 184
+ V ++VG+PN GKS+L+N++ ++A+ SR+ P + K RA G PG+T+D+
Sbjct: 228 IGVWMLLVGLPNTGKSSLLNAMKRLAVNASRYGSPSNKLVEGVKRTRARAGKAPGLTKDV 287
Query: 185 AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ F+I+++P ++ DTPG+++P + D E LKLA G I D GE +A Y+L
Sbjct: 288 SAFQISNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYIL------ 341
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
Y+L +R TY++ V G+ R
Sbjct: 342 -------------------------YHLNRMR----------CFTYVD--VIGLSRP--- 361
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHK--ASEARLMVSKKFLT-LFRTGKLG 361
ND++ + F+ ALK + L+ +F T LFR GKLG
Sbjct: 362 -----------TNDIQEVAAHIFDA-AYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKLG 409
Query: 362 PFILDDVP 369
F LD +P
Sbjct: 410 FFCLDSLP 417
>gi|125973281|ref|YP_001037191.1| GTP-binding protein YlqF [Clostridium thermocellum ATCC 27405]
gi|256003761|ref|ZP_05428749.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281417484|ref|ZP_06248504.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|385778807|ref|YP_005687972.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|419723176|ref|ZP_14250311.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
gi|419724920|ref|ZP_14251975.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|125713506|gb|ABN51998.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum ATCC 27405]
gi|255992322|gb|EEU02416.1| GTP-binding protein HSR1-related protein [Clostridium thermocellum
DSM 2360]
gi|281408886|gb|EFB39144.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum JW20]
gi|316940487|gb|ADU74521.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum DSM 1313]
gi|380771540|gb|EIC05405.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum YS]
gi|380780943|gb|EIC10606.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
thermocellum AD2]
Length = 291
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA R + LK+ D+V+E+ D+RIP SS +P + + K +++ LNK D
Sbjct: 2 NIQWFPGHMAKTRRILAENLKMVDVVVELLDARIPASSKNPEIDGIVKNKPKIVVLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ I N+W + ++S I I++ + +++L + + +K+ I R+ +
Sbjct: 62 LADEKISNEWSKWYNSQGYATIFIDSIKGTGIKQLKDQMRDIMKDRIERDRQRGRIFRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS+LIN I K A G PGVT++ + + I
Sbjct: 122 RTMIVGIPNVGKSSLINKIAG-----------KKSAVTGDRPGVTRNKQWINVNN--EIQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
++DTPG+L P D G+ LA++G+IKD ++ +A LL
Sbjct: 169 LMDTPGILWPKFEDKTVGINLAVTGAIKDEIIDTVELASILL 210
>gi|365902731|ref|ZP_09440554.1| GTPase [Lactobacillus malefermentans KCTC 3548]
Length = 287
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 135/247 (54%), Gaps = 25/247 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +L + D+V E+ D+RIPLSS +P L+ + K +I + K DL
Sbjct: 4 IQWFPGHMAKAIRQVEEKLPLVDIVFELVDARIPLSSRNPELKRLMKDKPHLIVMTKMDL 63
Query: 85 ANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
A+P + KW+ +F + IAI++ + +V+ + ++ E L + ++ +E +
Sbjct: 64 ADPEMTKKWIAYFKNEVGVRAIAIDSKANITVKNITKITESILADKLAHEEEKGLKERPI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS L+N + ++R K A VG PGVT+ + + + +
Sbjct: 124 RAMTIGIPNVGKSTLLNRL----VNR-------KVAQVGDTPGVTKGQQWLRSSKK--LE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D ETG KLAL+G+IKD + +A + + H +L R
Sbjct: 171 LLDTPGILWPKFEDPETGQKLALTGAIKDQRFASDDVALFAIKYFKQ----YHPHNLQER 226
Query: 257 TEVSQSE 263
+S +
Sbjct: 227 YHLSDDD 233
>gi|374582895|ref|ZP_09655989.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
gi|374418977|gb|EHQ91412.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
youngiae DSM 17734]
Length = 276
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 135/244 (55%), Gaps = 21/244 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM+ R + +LK D+V+E+ D+RIP SS +P L L K R++ LNK D
Sbjct: 2 SIQWFPGHMSKTRRLLLEQLKWVDVVLELADARIPASSRNPMLHKLLGNKARLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL-ELVELKLKEVIS------REPTL 136
LA+ N +KW+++ Y A++A + +++++ EL + L + R +
Sbjct: 62 LADSNWTSKWLKYLKESSPVY-AVSATTGVGIKQIVPELERMVLAKQAKQAQKGIRPQMI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+VG+PN+GKS+LIN + A +A VG PGVT+ +I R +
Sbjct: 121 RVMIVGIPNIGKSSLINQLTGGA-----------QAKVGNKPGVTRGNQWVRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D++ G KLA G+IKD V E ++ +++ LN R+ N
Sbjct: 168 LLDTPGMLWPKFDDLDVGRKLAALGAIKDDVFDIEELSIWIIDWLNLHSPSSLARYQNED 227
Query: 257 TEVS 260
TEV+
Sbjct: 228 TEVT 231
>gi|169824228|ref|YP_001691839.1| putative GTPase [Finegoldia magna ATCC 29328]
gi|167831033|dbj|BAG07949.1| putative GTPase [Finegoldia magna ATCC 29328]
Length = 285
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 24/228 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHM A IK +K+ D+V+ + DSRI SS +P ++ L K ++I LNK
Sbjct: 4 NNINWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKM 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLELVELKLKEVISRE 133
D+A+P I W+ +F K++ A+ S++ + +K+LE V K+ +
Sbjct: 64 DMADPKITQNWINYF--AKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKS 121
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ +M+VG+PNVGKS +IN + + A G PGVT+ +I +
Sbjct: 122 EIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK- 169
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D E GL LA +G+IKD ++ EE +A L+ L
Sbjct: 170 -MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKL 216
>gi|221485677|gb|EEE23958.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 459
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 176/368 (47%), Gaps = 89/368 (24%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAK--RRVIALNK 81
+I WFP HM AT AI+ LK D V+EVRD+R PL+S + L +L+++ +R++ LNK
Sbjct: 124 SITWFPAHMNRATVAIEKNLKHVDCVVEVRDARAPLTSGNSFLTERLASRGVKRLVVLNK 183
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAH------SRSSVQKLLELVELKLKEVISREPT 135
DL V D + + +A ++++ ++V+ L+ V + T
Sbjct: 184 ADL---------VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKVVDFALEHVQPKFKT 234
Query: 136 LLV--MVVGVPNVGKSALINSIHQIAL--SRF--PVQE-----KTKRATVGPLPGVTQDI 184
+ V ++VG+PN GKS+L+N++ ++A+ SR+ P + K RA G PG+T+D+
Sbjct: 235 IGVWMLLVGLPNTGKSSLLNAMKRLAVNASRYGSPSNKLVEGVKRTRARAGKAPGLTKDV 294
Query: 185 AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ F+I+++P ++ DTPG+++P + D E LKLA G I D GE +A Y+L
Sbjct: 295 SAFQISNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYIL------ 348
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
Y+L +R TY++ V G+ R
Sbjct: 349 -------------------------YHLNRMR----------CFTYVD--VIGLSRP--- 368
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHK--ASEARLMVSKKFLT-LFRTGKLG 361
ND++ + F+ ALK + L+ +F T LFR GKLG
Sbjct: 369 -----------TNDIQEVAAHIFDA-AYALKTNRRRVPPAPDLLSGCRFFTDLFRGGKLG 416
Query: 362 PFILDDVP 369
F LD +P
Sbjct: 417 FFCLDSLP 424
>gi|251797463|ref|YP_003012194.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
gi|247545089|gb|ACT02108.1| GTP-binding protein HSR1-related [Paenibacillus sp. JDR-2]
Length = 296
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 24/249 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+ IE+ D+RIPLSS +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRAKRQIQEKLKLIDIAIELLDARIPLSSRNPMVDEILGGKPRLIVLNKLD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W+ +F + +A+++ + + V + + L+E I R+ +
Sbjct: 62 LADPRVTEQWIDYFKYEGHETVAVDSSTGTRVGDIPVKAKEILQEKIDRQLAKGMNPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K +
Sbjct: 122 RGLIVGIPNVGKSTLINRLAGRNI-----------AITGDKPGVTKGQQWIKTTF--DMD 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+I++ ++ E IA + + L R +W L R
Sbjct: 169 LLDTPGILWPKFEDELVGYRLAMTGAIREQILNVEDIAFFAVRELAER----YWPALQER 224
Query: 257 TEVSQSETE 265
++ ++ T+
Sbjct: 225 FKLDKAPTD 233
>gi|303234815|ref|ZP_07321440.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
gi|302493933|gb|EFL53714.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
BVS033A4]
Length = 285
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 24/228 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHM A IK +K+ D+V+ + DSRI SS +P ++ L K ++I LNK
Sbjct: 4 NNINWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVRSSMNPVIEDILKDKPQLILLNKM 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLELVELKLKEVISRE 133
D+A+P I W+ +F K++ A+ S++ + +K+LE V K+ +
Sbjct: 64 DMADPKITQNWINYF--AKKNITALPIDSKNGKNLDKIEPTTKKILEDVLSSRKDKNIKS 121
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ +M+VG+PNVGKS +IN + + A G PGVT+ +I +
Sbjct: 122 EIIRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK- 169
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D E GL LA +G+IKD ++ EE +A L+ L
Sbjct: 170 -MELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKL 216
>gi|399047108|ref|ZP_10739240.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|433546085|ref|ZP_20502423.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
gi|398054941|gb|EJL47039.1| ribosome biogenesis GTP-binding protein YlqF [Brevibacillus sp.
CF112]
gi|432182701|gb|ELK40264.1| ribosome biogenesis GTPase [Brevibacillus agri BAB-2500]
Length = 297
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+PLSS +P + +S K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKLKLIDVVIELLDARLPLSSRNPMIDEIVSDKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ +W+ +F + I+A S V KL EL + +++++ +
Sbjct: 62 LADEKATEEWIAYFRKEGIRTLPIDALSGKGVNKLPELCKELAADMLAKRSERGMQGRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS+LIN + K A G P VT+ K+ ++
Sbjct: 122 RIMILGIPNVGKSSLINRLS-----------KRSVAATGDRPAVTKAQQWVKMGD--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA SG+IKD ++ +A ++++ +
Sbjct: 169 LLDTPGILWPKFEDQMVGLRLAASGAIKDELIDFTEVALFVISYM 213
>gi|195443902|ref|XP_002069628.1| GK11624 [Drosophila willistoni]
gi|194165713|gb|EDW80614.1| GK11624 [Drosophila willistoni]
Length = 323
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 165/366 (45%), Gaps = 90/366 (24%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ RL+ D V+E+ DSRIP++ + ++ K ++ LNK
Sbjct: 21 INWFPGHMTKGMRQIQQRLRNVDCVVEIHDSRIPIAGRNSQFFDTITGSGVKPHILVLNK 80
Query: 82 KDLANPNILNKWVRH-------------FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128
DL + N + +R F +CK V +L L + E
Sbjct: 81 MDLLD-NKQQRSIRQQLRSQQPELRHILFTNCKD-------QRNHGVLDILPLATRLISE 132
Query: 129 VI----SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 184
++ +M++GVPNVGKS++IN + + L R A VG G+T+ +
Sbjct: 133 SSRFNRAQSAEHNIMIIGVPNVGKSSVINVLRNVHLKR------KSAARVGAEAGITRAV 186
Query: 185 AG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
KI +P++Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LN
Sbjct: 187 GERIKIQEQPAVYMIDTPGILQPSISDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLN- 245
Query: 244 RGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDV--TYIEDLVTGVQRA 301
RH + +Y +K L + N S V Y + Q
Sbjct: 246 -------RH-------------QRFDY-VKKLHLQSGPCDNISSVLAEYAQ------QEG 278
Query: 302 LHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLG 361
+ + +++G VE +L L ++KF+ FRTG+LG
Sbjct: 279 MFHRVKQYNGQVEVMTNL-------------------------LAAARKFIHFFRTGQLG 313
Query: 362 PFILDD 367
P LD+
Sbjct: 314 PINLDE 319
>gi|406579906|ref|ZP_11055131.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|406582129|ref|ZP_11057260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|406584370|ref|ZP_11059402.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|406589226|ref|ZP_11063668.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410935906|ref|ZP_11367780.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
gi|404454845|gb|EKA01745.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD4E]
gi|404458533|gb|EKA04954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD3E]
gi|404464179|gb|EKA09736.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD2E]
gi|404471195|gb|EKA15747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
GMD1E]
gi|410735705|gb|EKQ77612.1| ribosome biogenesis GTP-binding protein [Enterococcus sp. GMD5E]
Length = 307
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 23 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 82
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 83 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 142
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 143 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 189
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 190 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 231
>gi|347521655|ref|YP_004779226.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|385832960|ref|YP_005870735.1| GTP-binding protein [Lactococcus garvieae Lg2]
gi|343180223|dbj|BAK58562.1| GTP-binding protein [Lactococcus garvieae ATCC 49156]
gi|343182113|dbj|BAK60451.1| GTP-binding protein [Lactococcus garvieae Lg2]
Length = 285
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK
Sbjct: 2 GVAIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP------- 134
DLA+ N + WV F+ +AIN+ + ++L + + + ++R
Sbjct: 62 ADLADRNAVKSWVEFFEKQGIIALAINSKEAHTAKRLTVAAKTLMADKLARNAERGIQNS 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+L M+VG+PN GKS L+N + K A G PGVT+ +
Sbjct: 122 SLRTMIVGIPNAGKSTLMNRLA-----------GKKVAVTGNKPGVTKGQQWLRT--NKE 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA----QYLL 238
+ +LDTPG+L P D + GLKLAL+G+IKD ++ + + QY L
Sbjct: 169 LEILDTPGILWPKFEDDQVGLKLALTGAIKDQLLPMDDVTIFGLQYFL 216
>gi|220928166|ref|YP_002505075.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
gi|219998494|gb|ACL75095.1| GTP1/OBG protein [Clostridium cellulolyticum H10]
Length = 292
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA R I LK+ D++IE+ D+RIP SS +P + + K R++A NK D
Sbjct: 2 NIQWFPGHMAKTRRLIAENLKLVDVIIELLDARIPFSSRNPEINSLIKNKPRLVAFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ I +W++ + D I IN+ + + ++ + E I R +
Sbjct: 62 LADERISRQWIKWYADQGIDCILINSINGKGLNEIKAKARELMFEKIERNRAKGKLFTPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+ IN I A A G PGVT+ +I+ +
Sbjct: 122 RTMVVGIPNVGKSSFINKIVGKAT-----------AVTGDRPGVTRGKQWIRISS--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D E G+ LA +G+IKD ++ +A LL L+
Sbjct: 169 LLDTPGILWPKFEDQEVGMNLAFTGAIKDDIMDTGEVAMALLYRLS 214
>gi|374997103|ref|YP_004972602.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
gi|357215469|gb|AET70087.1| ribosome biogenesis GTP-binding protein YlqF [Desulfosporosinus
orientis DSM 765]
Length = 277
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 32/263 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA R ++ +LK D+V+E+ D+RIP SS +P L L K R++ LNK D
Sbjct: 2 SIQWFPGHMAKTRRLLEEQLKWVDVVLELADARIPASSRNPMLHKLLGNKTRLLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE------PTLL 137
LA PN +KW+ H + A++A +++++ +E ++ +++ P L+
Sbjct: 62 LAAPNETSKWLTHLKESSPVF-AVSATKGMGIKQIVPELEQMVRAKQAKQAAKGIRPQLI 120
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN+GKS+LIN + A + V PGVT+ +I R +
Sbjct: 121 KAMIVGIPNIGKSSLINQLTGGA-----------QVKVANKPGVTRGNQWVRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D++ G KLA G++KD V E +A ++ L W +LN+
Sbjct: 168 LLDTPGMLWPKFDDLDVGRKLAALGAVKDDVFDLEELAAWV----------LEWLNLNSP 217
Query: 257 TEVSQSETENKHEYNLKDLRPKR 279
+S+ + E+ E L+ L KR
Sbjct: 218 NSLSRYKAED-SEVTLESLGRKR 239
>gi|224476369|ref|YP_002633975.1| ribosomal biogenesis GTPase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420976|emb|CAL27790.1| putative GTPase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 289
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS + + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNSMIDEVIQNKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
AN + ++KW +F S +A++A ++++ + KE R+ +
Sbjct: 63 ANLSEISKWKDYFRSKGYYPVAVDAKHGKGLKQVEQAAIEATKEKFERDKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + A+ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANKAI-----------AKTGNTPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D G KL+L+G+IKDS+V + +A Y L
Sbjct: 170 LDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDDVAIYGL 210
>gi|153812957|ref|ZP_01965625.1| hypothetical protein RUMOBE_03364 [Ruminococcus obeum ATCC 29174]
gi|149830904|gb|EDM85994.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
ATCC 29174]
Length = 285
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 24/248 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R ++ LK+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 NVQWYPGHMTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQNKSRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W +F + +++ + S ++ + +++ KE I R+ +
Sbjct: 62 LADERQNEAWKEYFQKRGFHVVKVDSRNGSGMKTIQNVIQEACKEKIERDRRRGIKNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV G+PNVGKS IN+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVAGIPNVGKSTFINTFAGKAC-----------AKTGNRPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D + G++LA GSIKD ++ E +A +L+ L T + L L R
Sbjct: 169 LLDTPGILWPKFEDQQVGIRLACVGSIKDDILNMEELALWLIEHLRTNYSGL----LEKR 224
Query: 257 TEVSQSET 264
+S+ T
Sbjct: 225 YGISEEGT 232
>gi|386586047|ref|YP_006082449.1| GTP1/OBG protein [Streptococcus suis D12]
gi|353738193|gb|AER19201.1| GTP1/OBG protein [Streptococcus suis D12]
Length = 283
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +S+V+K+ + + +KE I R + TL
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQSTVKKVTDAAKSLMKEKIERLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|255655269|ref|ZP_05400678.1| putative GTPase [Clostridium difficile QCD-23m63]
gi|296451254|ref|ZP_06892994.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296880394|ref|ZP_06904357.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
gi|296259860|gb|EFH06715.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP08]
gi|296428635|gb|EFH14519.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
NAP07]
Length = 298
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 16 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + K++E + +E +S +E +
Sbjct: 76 ADKDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 136 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 183 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALKLIEKL 226
>gi|420144102|ref|ZP_14651590.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
gi|391855554|gb|EIT66103.1| GTP-binding protein [Lactococcus garvieae IPLA 31405]
Length = 285
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK
Sbjct: 2 GVAIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLDKIIGDKPRLIALNK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP------- 134
DLA+ N + WV F+ +AIN+ + ++L + + + ++R
Sbjct: 62 ADLADRNAVKAWVEFFEKQGIIALAINSKEAHTAKRLTVAAKTLMADKLARNAERGIQNS 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+L M+VG+PN GKS L+N + K A G PGVT+ +
Sbjct: 122 SLRTMIVGIPNAGKSTLMNRLA-----------GKKVAVTGNKPGVTKGQQWLRT--NKE 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA----QYLL 238
+ +LDTPG+L P D + GLKLAL+G+IKD ++ + + QY L
Sbjct: 169 LEILDTPGILWPKFEDDQVGLKLALTGAIKDQLLPMDDVTIFGLQYFL 216
>gi|27467839|ref|NP_764476.1| ribosomal biogenesis GTPase [Staphylococcus epidermidis ATCC 12228]
gi|251810676|ref|ZP_04825149.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282876323|ref|ZP_06285190.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|293366791|ref|ZP_06613467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417656693|ref|ZP_12306376.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|417659010|ref|ZP_12308623.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|417909938|ref|ZP_12553671.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|417913333|ref|ZP_12557000.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|418605315|ref|ZP_13168640.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|418607736|ref|ZP_13170959.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|418609824|ref|ZP_13172958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|418616549|ref|ZP_13179473.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|418622162|ref|ZP_13184918.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|418624370|ref|ZP_13187045.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|418628990|ref|ZP_13191506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|418664729|ref|ZP_13226195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|419768058|ref|ZP_14294195.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770965|ref|ZP_14297027.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|420165219|ref|ZP_14671923.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|420169786|ref|ZP_14676364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|420172756|ref|ZP_14679254.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|420182914|ref|ZP_14689047.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|420187551|ref|ZP_14693571.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|420194018|ref|ZP_14699847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|420197136|ref|ZP_14702860.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|420202042|ref|ZP_14707637.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|420206436|ref|ZP_14711946.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|420209477|ref|ZP_14714914.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|420214276|ref|ZP_14719555.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|420216106|ref|ZP_14721328.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|420220026|ref|ZP_14725016.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|420221964|ref|ZP_14726889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|420224827|ref|ZP_14729665.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|420227035|ref|ZP_14731808.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|420229358|ref|ZP_14734064.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|420231716|ref|ZP_14736361.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|421607254|ref|ZP_16048500.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
gi|27315384|gb|AAO04518.1|AE016747_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805836|gb|EES58493.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295348|gb|EFA87875.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis SK135]
gi|291319092|gb|EFE59462.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736354|gb|EGG72626.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU028]
gi|329736649|gb|EGG72915.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU045]
gi|341652547|gb|EGS76335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU037]
gi|341655615|gb|EGS79339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU109]
gi|374402412|gb|EHQ73437.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU041]
gi|374403853|gb|EHQ74848.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU057]
gi|374406160|gb|EHQ77063.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU065]
gi|374410175|gb|EHQ80936.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU081]
gi|374820627|gb|EHR84703.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU120]
gi|374827537|gb|EHR91399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU123]
gi|374827599|gb|EHR91460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU125]
gi|374834984|gb|EHR98615.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU127]
gi|383360979|gb|EID38362.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362514|gb|EID39866.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus aureus
subsp. aureus IS-K]
gi|394236386|gb|EJD81920.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM088]
gi|394241433|gb|EJD86847.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM067]
gi|394243086|gb|EJD88460.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM070]
gi|394249377|gb|EJD94590.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM049]
gi|394255993|gb|EJE00929.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM039]
gi|394265943|gb|EJE10589.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM020]
gi|394266716|gb|EJE11341.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM021]
gi|394270015|gb|EJE14538.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM018]
gi|394278275|gb|EJE22592.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM008]
gi|394278924|gb|EJE23236.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM003]
gi|394283641|gb|EJE27806.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05005]
gi|394287033|gb|EJE31007.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04008]
gi|394289995|gb|EJE33865.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH08001]
gi|394292556|gb|EJE36298.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05001]
gi|394294230|gb|EJE37916.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH06004]
gi|394297536|gb|EJE41133.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH05003]
gi|394299124|gb|EJE42675.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH04003]
gi|394302258|gb|EJE45706.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIH051668]
gi|406657046|gb|EKC83439.1| GTPase YlqF [Staphylococcus epidermidis AU12-03]
Length = 287
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F + +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWEIYFKNEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + RH N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYN 226
>gi|332799158|ref|YP_004460657.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
gi|332696893|gb|AEE91350.1| ribosome biogenesis GTP-binding protein YlqF [Tepidanaerobacter
acetatoxydans Re1]
Length = 285
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 123/218 (56%), Gaps = 15/218 (6%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA + IK LK+ D+V+E+ D+R PLS+ P + + K ++ +NK D
Sbjct: 2 DIQWYPGHMAKTKKMIKDNLKLVDVVLELTDARAPLSTHLPDINSLIGNKNSIMIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
LA+ I + W+++F IA+N+ +S ++ L L+ K+ + R M++G+
Sbjct: 62 LADKKITDMWLKYFKKQGIKAIAVNSLKKSELKNLYNLLGNVKKKTVLRSTR--CMIIGI 119
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS+LIN + K A +PGVT++ K+ ++ +LDTPG+
Sbjct: 120 PNVGKSSLINQMAG-----------RKSARTADIPGVTRNKMWLKVDD--NLELLDTPGI 166
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
L P D TG+KLA+ GSIK ++ E+++ L+ L
Sbjct: 167 LWPKFEDKTTGIKLAILGSIKQELLDFEKLSLILIKYL 204
>gi|319947077|ref|ZP_08021311.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|319747125|gb|EFV99384.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 290
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 11 IQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 70
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ TL
Sbjct: 71 ADPVATKEWQEYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLR 130
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 131 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDLEI 177
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D + LKLAL+G+IKD ++ + + + L +
Sbjct: 178 LDTPGILWPKFEDEDVALKLALTGAIKDQLLPMDEVTIFGLEYFKS 223
>gi|374673347|dbj|BAL51238.1| GTP-binding protein [Lactococcus lactis subsp. lactis IO-1]
Length = 282
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ N + +W+ +FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSNAVAQWIEYFDDQGFITLAINSKEEYTAKRLTVAAKKLMTDKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|293568166|ref|ZP_06679502.1| GTP-binding protein [Enterococcus faecium E1071]
gi|314938031|ref|ZP_07845341.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|314941983|ref|ZP_07848844.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|314948764|ref|ZP_07852136.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|314951782|ref|ZP_07854821.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|314991811|ref|ZP_07857269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|314995852|ref|ZP_07860939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|389868316|ref|YP_006375739.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|424779675|ref|ZP_18206586.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|424794597|ref|ZP_18220544.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|424825722|ref|ZP_18250685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|424855823|ref|ZP_18280121.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|424866148|ref|ZP_18289997.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|424938571|ref|ZP_18354355.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|424952498|ref|ZP_18367515.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|424956838|ref|ZP_18371598.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|424959384|ref|ZP_18373973.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|424963125|ref|ZP_18377390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|424967388|ref|ZP_18381091.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|424969857|ref|ZP_18383405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|424973476|ref|ZP_18386753.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|424976285|ref|ZP_18389388.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|424980599|ref|ZP_18393381.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|424983189|ref|ZP_18395789.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|424986601|ref|ZP_18399010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|424989599|ref|ZP_18401859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|424995261|ref|ZP_18407157.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|424997214|ref|ZP_18408979.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|425001557|ref|ZP_18413061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|425003209|ref|ZP_18414588.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|425009197|ref|ZP_18420229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|425010142|ref|ZP_18421112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|425013313|ref|ZP_18424049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|425017282|ref|ZP_18427795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|425019858|ref|ZP_18430195.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|425022883|ref|ZP_18433036.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|425031327|ref|ZP_18436464.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|425036885|ref|ZP_18441600.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|425039240|ref|ZP_18443797.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|425043851|ref|ZP_18448053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|425044394|ref|ZP_18448556.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|425049526|ref|ZP_18453373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|425051442|ref|ZP_18455108.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|425060028|ref|ZP_18463338.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|447912908|ref|YP_007394320.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
gi|291589156|gb|EFF20968.1| GTP-binding protein [Enterococcus faecium E1071]
gi|313589956|gb|EFR68801.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a01]
gi|313593622|gb|EFR72467.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133B]
gi|313596061|gb|EFR74906.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133A]
gi|313599235|gb|EFR78080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133C]
gi|313642606|gb|EFS07186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0133a04]
gi|313644830|gb|EFS09410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX0082]
gi|388533565|gb|AFK58757.1| ribosome biogenesis GTP-binding protein [Enterococcus faecium DO]
gi|402925013|gb|EJX45189.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
V689]
gi|402925238|gb|EJX45399.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R501]
gi|402926391|gb|EJX46431.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
S447]
gi|402931138|gb|EJX50733.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R499]
gi|402936784|gb|EJX55935.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R496]
gi|402939052|gb|EJX58010.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R497]
gi|402941118|gb|EJX59871.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R494]
gi|402944938|gb|EJX63318.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
R446]
gi|402950239|gb|EJX68248.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1190]
gi|402950675|gb|EJX68658.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1986]
gi|402954529|gb|EJX72140.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1140]
gi|402958434|gb|EJX75747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1137]
gi|402963190|gb|EJX80076.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1139]
gi|402966045|gb|EJX82716.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV99]
gi|402970088|gb|EJX86454.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
P1123]
gi|402972187|gb|EJX88405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV69]
gi|402976063|gb|EJX91984.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV38]
gi|402977896|gb|EJX93669.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV168]
gi|402981481|gb|EJX97007.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV26]
gi|402986120|gb|EJY01267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV161]
gi|402986623|gb|EJY01738.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV165]
gi|402990422|gb|EJY05295.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV1]
gi|402992483|gb|EJY07184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
ERV102]
gi|403000950|gb|EJY15033.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E422]
gi|403001315|gb|EJY15376.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E417]
gi|403004617|gb|EJY18406.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C621]
gi|403010679|gb|EJY24037.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C497]
gi|403011633|gb|EJY24927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
C1904]
gi|403013185|gb|EJY26312.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
514]
gi|403015972|gb|EJY28820.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
515]
gi|403016878|gb|EJY29667.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
513]
gi|403017894|gb|EJY30617.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
511]
gi|403027386|gb|EJY39279.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
509]
gi|403029919|gb|EJY41641.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
510]
gi|403037710|gb|EJY48974.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
506]
gi|403043020|gb|EJY53949.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
503]
gi|445188617|gb|AGE30259.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecium NRRL B-2354]
Length = 307
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 23 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 82
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 83 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 142
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 143 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 189
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 190 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 231
>gi|409349423|ref|ZP_11232890.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
gi|407878170|emb|CCK84948.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
equicursoris CIP 110162]
Length = 283
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A ++ +L + D+V+E+ D+RIPLSS +P ++ + K +I LNK DL
Sbjct: 4 IQWFPGHMNKARNQLEEKLSLIDVVVEILDARIPLSSRNPMIEELVGNKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A ++VQ L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNVQALVTLIKKASSEKVKKLEERGASNPIVR 123
Query: 138 VMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +VGVPN GKS +IN + H +A++ G PGVT+ A K + I
Sbjct: 124 IALVGVPNCGKSTIINRLVGHNVAIT-------------GDKPGVTKGQAWLKTNY--GI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + G KLA G+IKD++ + +A +++ +L
Sbjct: 169 QILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHADDVALFVIRLL 214
>gi|257884858|ref|ZP_05664511.1| GTP-binding protein [Enterococcus faecium 1,231,501]
gi|257820696|gb|EEV47844.1| GTP-binding protein [Enterococcus faecium 1,231,501]
Length = 286
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVAAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|163814004|ref|ZP_02205397.1| hypothetical protein COPEUT_00156 [Coprococcus eutactus ATCC 27759]
gi|158450698|gb|EDP27693.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus eutactus
ATCC 27759]
Length = 279
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 22/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R ++ +K+ D+VIE+ D+RIPLSS +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKAKRMMQEDIKLIDIVIELVDARIPLSSKNPDIDELAKNKYRLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIA-INAHSRSSVQKLLELVELKLKEVISREPT------- 135
LA+ + KW +++ S K ++A INA + ++ + +V+ +E I R+
Sbjct: 62 LADDAVTAKWEKYY-SEKGFFVAKINARDGAGMKSINGIVQEACREKIERDRKRGIINRP 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS INS + A ++ VG PGVT+ ++ +I
Sbjct: 121 IRAMIVGIPNVGKSTFINSYARKACTK-----------VGNKPGVTKGKQWIRLGK--NI 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSI D ++ IA L+ L
Sbjct: 168 ELLDTPGILWPKFDDEAVGLRLAYIGSINDEILNVTDIAVELIKFL 213
>gi|322385536|ref|ZP_08059180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|417921041|ref|ZP_12564536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|321270274|gb|EFX53190.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
gi|342834961|gb|EGU69219.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
cristatus ATCC 51100]
Length = 283
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQESIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S +AIN+ +S+V+K+ E + + + ++R+ T
Sbjct: 62 DLADPTLTKEWQAYFESRGIKTLAINSKEQSAVKKVTEAAKKLMADKLARQRERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD+++
Sbjct: 169 EILDTPGILWPKFEDEMVALKLALTGAIKDNLL 201
>gi|424761234|ref|ZP_18188816.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
gi|402402218|gb|EJV34939.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R508]
Length = 314
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK DL
Sbjct: 34 IQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDL 93
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 94 ADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIR 153
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + K A G PGVT+ + + + +
Sbjct: 154 AMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LEL 200
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 201 LDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 244
>gi|312865180|ref|ZP_07725408.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
gi|311099291|gb|EFQ57507.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus downei
F0415]
Length = 283
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
+I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ASIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+P ++ W +F+ + INA +S+V+KL + + +L+E ++
Sbjct: 62 DLADPLLIKDWQAYFEKQGIKTLLINAKEQSTVKKLTDAAKNLMSDKLERLREKGIQKEG 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D E GLKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDNLLPMDEVTIF 209
>gi|449927031|ref|ZP_21801063.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|450050424|ref|ZP_21840267.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
gi|449160029|gb|EMB63317.1| ribosomal biogenesis GTPase [Streptococcus mutans 4SM1]
gi|449202643|gb|EMC03545.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM1]
Length = 283
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ T
Sbjct: 62 DLADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M+VG+PNVGKS L+N + K A VG PGVT+ K ++
Sbjct: 122 LRTMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 169 EILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|417920255|ref|ZP_12563767.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
gi|342829906|gb|EGU64247.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
australis ATCC 700641]
Length = 283
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P +W +F+S +AIN+ +S+V+K+ + + + + I+R+ TL
Sbjct: 64 ADPVATKEWQEYFESQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D + LKLAL+G+IKD ++ + + + L +
Sbjct: 171 LDTPGILWPKFEDEDVALKLALTGAIKDQLLPMDEVTIFGLEYFKS 216
>gi|153813998|ref|ZP_01966666.1| hypothetical protein RUMTOR_00205 [Ruminococcus torques ATCC 27756]
gi|317502412|ref|ZP_07960577.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088005|ref|ZP_08336928.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336439693|ref|ZP_08619300.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145848394|gb|EDK25312.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
ATCC 27756]
gi|316896222|gb|EFV18328.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330409316|gb|EGG88765.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336015591|gb|EGN45405.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 280
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA I ++W+ +F + +N+ + ++ ++ KE R+ +
Sbjct: 62 LAEERINDEWIDYFKDRGYSAVKVNSKKGGGMNQIRSAIQEACKEKTERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E G KLA GSIKD ++ E ++ L+ LN
Sbjct: 169 LLDTPGILWPKFEDQEVGKKLAFIGSIKDEILQTEELSTELIKFLNA 215
>gi|449958420|ref|ZP_21809743.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|450140205|ref|ZP_21872835.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
gi|449170022|gb|EMB72763.1| ribosomal biogenesis GTPase [Streptococcus mutans 4VF1]
gi|449232095|gb|EMC31231.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML1]
Length = 283
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 20/220 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK D
Sbjct: 3 TIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTL 136
LA+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 63 LADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETL 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS L+N + K A VG PGVT+ K ++
Sbjct: 123 RTMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 170 ILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|281491814|ref|YP_003353794.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
gi|281375528|gb|ADA65038.1| Ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
KF147]
Length = 282
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ N + +W+ +FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSNAVAQWIEYFDEQGFITLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|69246756|ref|ZP_00604104.1| GTP-binding protein [Enterococcus faecium DO]
gi|425057006|ref|ZP_18460442.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
gi|68195110|gb|EAN09570.1| GTP-binding protein [Enterococcus faecium DO]
gi|403041302|gb|EJY52327.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
504]
Length = 293
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 9 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 68
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 69 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 128
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 129 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 175
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 176 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 217
>gi|450044537|ref|ZP_21837905.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|450086473|ref|ZP_21853668.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|450131251|ref|ZP_21869361.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|450175972|ref|ZP_21885493.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
gi|449153988|gb|EMB57611.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML8]
gi|449201504|gb|EMC02495.1| ribosomal biogenesis GTPase [Streptococcus mutans N34]
gi|449219431|gb|EMC19398.1| ribosomal biogenesis GTPase [Streptococcus mutans NV1996]
gi|449245886|gb|EMC44207.1| ribosomal biogenesis GTPase [Streptococcus mutans SM1]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGNKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|134299894|ref|YP_001113390.1| HSR1-like GTP-binding protein [Desulfotomaculum reducens MI-1]
gi|134052594|gb|ABO50565.1| Ras superfamily GTP-binding protein YlqF [Desulfotomaculum reducens
MI-1]
Length = 284
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 155/311 (49%), Gaps = 52/311 (16%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ LK+ D+ E+ D+RIP+SS++P + L K RVI LNK D
Sbjct: 4 QIQWFPGHMAKAKRQVQDALKLVDVAFELLDARIPVSSSNPMIDQILGQKPRVIILNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------REP-TL 136
LA+P+I +W R D IA++ ++++ + + + E ++ R P +
Sbjct: 64 LADPSITKQWQRALDRPYIKAIAVDTIKGEGLKEVPRVASMLVAEQMAKLAAKGRRPRAI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS IN R ++ TK G PGVT+ I + S+
Sbjct: 124 RCMVLGIPNVGKSTFIN--------RLVGRKATK---TGDTPGVTKGQQW--IRTQGSLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D E G KLA++G+IK+ V ++ L L W N
Sbjct: 171 LLDTPGILWPKFEDPEVGYKLAVTGAIKEQVFDIYEVSLKL----------LQWLAEYNP 220
Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDE 316
++ K Y + +L P+ K + D+ GV+R L VS G + DE
Sbjct: 221 EKL-------KERYRMNELNPEATK--------LLWDI--GVKRGLLVS-----GGLVDE 258
Query: 317 NDLESLIEQQF 327
+ + LI ++F
Sbjct: 259 SKVAQLILKEF 269
>gi|387786219|ref|YP_006251315.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449976138|ref|ZP_21816116.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|450098219|ref|ZP_21857901.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|450171566|ref|ZP_21884063.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
gi|379132620|dbj|BAL69372.1| ribosomal biogenesis GTPase [Streptococcus mutans LJ23]
gi|449175866|gb|EMB78242.1| ribosomal biogenesis GTPase [Streptococcus mutans 11VS1]
gi|449221787|gb|EMC21544.1| ribosomal biogenesis GTPase [Streptococcus mutans SF1]
gi|449243888|gb|EMC42289.1| ribosomal biogenesis GTPase [Streptococcus mutans SM4]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P + GLKLA++G+IKD+++ + I + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|449875654|ref|ZP_21782326.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
gi|449930305|ref|ZP_21802010.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449980074|ref|ZP_21816995.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449999609|ref|ZP_21824578.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|450005823|ref|ZP_21826894.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|450063408|ref|ZP_21844874.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|450127425|ref|ZP_21868583.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|450158654|ref|ZP_21878970.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449163670|gb|EMB66766.1| ribosomal biogenesis GTPase [Streptococcus mutans 3SN1]
gi|449177481|gb|EMB79782.1| ribosomal biogenesis GTPase [Streptococcus mutans 5SM3]
gi|449186740|gb|EMB88556.1| ribosomal biogenesis GTPase [Streptococcus mutans N29]
gi|449188279|gb|EMB90002.1| ribosomal biogenesis GTPase [Streptococcus mutans NMT4863]
gi|449204705|gb|EMC05491.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML5]
gi|449230813|gb|EMC30059.1| ribosomal biogenesis GTPase [Streptococcus mutans U2A]
gi|449242152|gb|EMC40755.1| ribosomal biogenesis GTPase [Streptococcus mutans 66-2A]
gi|449253617|gb|EMC51563.1| ribosomal biogenesis GTPase [Streptococcus mutans S1B]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|160892724|ref|ZP_02073514.1| hypothetical protein CLOL250_00254 [Clostridium sp. L2-50]
gi|156865765|gb|EDO59196.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
L2-50]
Length = 285
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 22/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R ++ +K+ D+VIE+ D+R+P SS +P + + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKAKRMMQEDIKLIDVVIELIDARVPYSSKNPDIDALAANKYRLILLNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIA-INAHSRSSVQKLLELVELKLKEVISREPT------- 135
LA+ + +W ++ K ++A INA S ++ + +V+ KE I R+
Sbjct: 62 LADAAVTAEWEAYYKE-KGFFVAKINARSGDGMKNISNVVKEACKEKIERDRKRGIINRP 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M+VG+PNVGKS INS + A ++ VG PGVT+ ++ I
Sbjct: 121 LRAMIVGIPNVGKSTFINSYARKACTK-----------VGNKPGVTKGKQWIRLGK--DI 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E GL+LA GSI D ++ +A L+ L
Sbjct: 168 ELLDTPGILWPKFDDKEVGLRLAFIGSINDEILSITDLAYELIKFL 213
>gi|449921541|ref|ZP_21798976.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
gi|449156980|gb|EMB60434.1| ribosomal biogenesis GTPase [Streptococcus mutans 1SM1]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|312866577|ref|ZP_07726792.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
gi|311097876|gb|EFQ56105.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parasanguinis F0405]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 28/237 (11%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLMILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P +W +F++ +AIN+ +S+V+K+ + + + + I+R+ T
Sbjct: 62 DLADPVATKEWQDYFEAQGIKTLAINSKEQSTVKKVTDAAKSLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKYL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKD--------SVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D E LKLAL+G+IKD ++ G ++ AVL R
Sbjct: 169 EILDTPGILWPKFEDEEVALKLALTGAIKDQLLPMDEVTIFGLNYFKEHYPAVLQER 225
>gi|242373536|ref|ZP_04819110.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242348899|gb|EES40501.1| possible GTP-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 309
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 18 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDM 77
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N L KW +F +A++A +++ + KE RE +
Sbjct: 78 TNLKELEKWESYFKDQGFYPVAVDAKHGKNLKNVEAEAIKATKEKFDREKEKGLKPRAIR 137
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++ A G PGVT+ K+ S+ +
Sbjct: 138 AMIVGIPNVGKSTLINKLANRSI-----------AQTGNKPGVTKQQQWIKVGK--SLQL 184
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D + G KL+L+G+IKDS+V + +A Y L +
Sbjct: 185 LDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 228
>gi|227551190|ref|ZP_03981239.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|293377188|ref|ZP_06623396.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|293570273|ref|ZP_06681342.1| GTP-binding protein [Enterococcus faecium E980]
gi|424765200|ref|ZP_18192603.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|425054012|ref|ZP_18457527.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430840980|ref|ZP_19458901.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|431034777|ref|ZP_19491654.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|431102201|ref|ZP_19496812.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|431738013|ref|ZP_19526963.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|431740438|ref|ZP_19529353.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|431751528|ref|ZP_19540216.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|431756373|ref|ZP_19545005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|431761625|ref|ZP_19550187.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
gi|227179658|gb|EEI60630.1| GTP-binding protein [Enterococcus faecium TX1330]
gi|291609680|gb|EFF38941.1| GTP-binding protein [Enterococcus faecium E980]
gi|292644208|gb|EFF62310.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
PC4.1]
gi|402417222|gb|EJV49526.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
TX1337RF]
gi|403036936|gb|EJY48269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
505]
gi|430494711|gb|ELA70946.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1007]
gi|430563492|gb|ELB02701.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1590]
gi|430570429|gb|ELB09390.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1613]
gi|430598049|gb|ELB35809.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1972]
gi|430603302|gb|ELB40832.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2039]
gi|430615309|gb|ELB52267.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2620]
gi|430620227|gb|ELB57029.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3083]
gi|430624317|gb|ELB60967.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3548]
Length = 293
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 9 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 68
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 69 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 128
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 129 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 175
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 176 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 217
>gi|449909707|ref|ZP_21794330.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
gi|449971257|ref|ZP_21814298.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|450029521|ref|ZP_21832725.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|450035162|ref|ZP_21834851.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|450056943|ref|ZP_21842300.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|450067235|ref|ZP_21846489.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|450070397|ref|ZP_21847531.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|450093717|ref|ZP_21856703.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|450110770|ref|ZP_21862320.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|450148705|ref|ZP_21875763.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|450182873|ref|ZP_21888494.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449172252|gb|EMB74883.1| ribosomal biogenesis GTPase [Streptococcus mutans 2VS1]
gi|449194447|gb|EMB95803.1| ribosomal biogenesis GTPase [Streptococcus mutans G123]
gi|449195801|gb|EMB97109.1| ribosomal biogenesis GTPase [Streptococcus mutans M21]
gi|449206006|gb|EMC06727.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML4]
gi|449208171|gb|EMC08788.1| ribosomal biogenesis GTPase [Streptococcus mutans NLML9]
gi|449213883|gb|EMC14206.1| ribosomal biogenesis GTPase [Streptococcus mutans M2A]
gi|449216983|gb|EMC17061.1| ribosomal biogenesis GTPase [Streptococcus mutans W6]
gi|449224544|gb|EMC24176.1| ribosomal biogenesis GTPase [Streptococcus mutans SM6]
gi|449235498|gb|EMC34455.1| ribosomal biogenesis GTPase [Streptococcus mutans 14D]
gi|449244107|gb|EMC42495.1| ribosomal biogenesis GTPase [Streptococcus mutans 24]
gi|449261123|gb|EMC58608.1| ribosomal biogenesis GTPase [Streptococcus mutans OMZ175]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|423082353|ref|ZP_17070945.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
gi|423087745|ref|ZP_17076131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357544059|gb|EHJ26065.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
050-P50-2011]
gi|357548679|gb|EHJ30539.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
002-P50-2011]
Length = 298
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 16 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + K++E + +E +S +E +
Sbjct: 76 ADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 136 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 183 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKL 226
>gi|417910786|ref|ZP_12554502.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
gi|341654974|gb|EGS78710.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU105]
Length = 287
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 128/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDYVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F + +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWEIYFKNEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + RH N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYN 226
>gi|326430802|gb|EGD76372.1| hypothetical protein PTSG_01072 [Salpingoeca sp. ATCC 50818]
Length = 388
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 134/235 (57%), Gaps = 17/235 (7%)
Query: 21 GGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALN 80
G +WFPGHMAA RA++ L+ D V+EV D+R+P +P + L+ R++ LN
Sbjct: 16 GKTATHWFPGHMAAGLRAMQKNLRRCDCVLEVHDARVPFIGRNPQFK-YLAGTPRILLLN 74
Query: 81 KKDLA-------NPNILNKWVRHFDSCKQDYIAINAHSR-SSVQKLLELVELKL-KEVIS 131
K DLA I+++ + + + D + I+ + + V++++ V + K+V+
Sbjct: 75 KADLAPTPQPEEKEAIMHECLPNGELVYSDVLYISCGKKQADVRQVMPAVLKSIGKDVLD 134
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIA 190
L +++ G+PNVGKS+L+N++ + + K K A G PGVT+ + KI
Sbjct: 135 SRQHLRLLIAGMPNVGKSSLVNTLRSV------LANKRKCARTGDRPGVTRTVQQDVKIH 188
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
P +Y+LDTPGV++P + + + + LA+ G+++D +VGEE +A YLL LN G
Sbjct: 189 DDPPVYILDTPGVMIPDLDNQDHAMTLAMLGTLRDELVGEEHVADYLLFSLNQLG 243
>gi|239631518|ref|ZP_04674549.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980689|ref|ZP_12621369.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
gi|239525983|gb|EEQ64984.1| ras superfamily protein-binding protein YlqF [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525012|gb|EKP99919.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei 12A]
Length = 286
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K D+V+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDIVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|255100275|ref|ZP_05329252.1| putative GTPase [Clostridium difficile QCD-63q42]
gi|255306215|ref|ZP_05350387.1| putative GTPase [Clostridium difficile ATCC 43255]
gi|423090845|ref|ZP_17079131.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
gi|357555960|gb|EHJ37582.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium difficile
70-100-2010]
Length = 298
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 16 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + K++E + +E +S +E +
Sbjct: 76 ADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 136 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 183 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKL 226
>gi|338813257|ref|ZP_08625386.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
gi|337274616|gb|EGO63124.1| GTP-binding protein HSR1-related protein [Acetonema longum DSM
6540]
Length = 281
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I+WFPGHMA A R I LK+ D+VIE+ D+RIP SSA+P +Q + K RVIA NK D
Sbjct: 2 HIHWFPGHMAKARRVISEHLKLIDVVIELLDARIPESSANPMIQEIVGDKPRVIAFNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W+ F AI A S +++L++ VE E +++ +
Sbjct: 62 LADSRHTEQWMARFKEQGLPVAAIEAVSGKGLKQLIQYVEQAAAEKLAKWEAKGIKSRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS+LIN + L V+ + PGVT+ KI +R +
Sbjct: 122 RAMVLGIPNVGKSSLINRL----LGTATVKTANR-------PGVTRGQQWIKIGNR--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P + D KLA++G++KD V + + + L+ L
Sbjct: 169 LLDTPGVLWPKMDDQAVAFKLAVTGAVKDDVYDYDTVLKQLVDFL 213
>gi|430821967|ref|ZP_19440548.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430864451|ref|ZP_19480373.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|431743482|ref|ZP_19532361.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
gi|430443799|gb|ELA53761.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0120]
gi|430553998|gb|ELA93672.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1574]
gi|430606914|gb|ELB44251.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2071]
Length = 286
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAVYGL 210
>gi|416124355|ref|ZP_11595351.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418328014|ref|ZP_12939144.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
gi|319401465|gb|EFV89675.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365232401|gb|EHM73399.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 287
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKKHYN 226
>gi|430825090|ref|ZP_19443300.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
gi|430446482|gb|ELA56154.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0164]
Length = 286
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPATKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|449964553|ref|ZP_21811368.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
gi|449172398|gb|EMB75026.1| ribosomal biogenesis GTPase [Streptococcus mutans 15VF2]
Length = 283
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 20/220 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK D
Sbjct: 3 TIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTL 136
LA+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ TL
Sbjct: 63 LADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETL 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS L+N + K A VG PGVT+ K ++
Sbjct: 123 RTMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 170 ILDTPGILWPKFEEEAIGLKLAMTGAIKDNLLPMDEITIF 209
>gi|334340375|ref|YP_004545355.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
gi|334091729|gb|AEG60069.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
ruminis DSM 2154]
Length = 283
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 150/312 (48%), Gaps = 54/312 (17%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ LK+ D+ +E+ D+RIPLSS +P + L K RVI LNK D
Sbjct: 4 QIQWFPGHMAKARRQVQEALKLVDVAVELLDARIPLSSENPMIGQILGNKPRVIILNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
LA+P + W + + + IA++ ++++ + L + E +++
Sbjct: 64 LADPGLTKAWQKKLERDQVKVIAVDTLKGEGLKEVPKAANLLVAEQMAKLAAKGRRARAA 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPSI 195
MV+G+PNVGKS+ IN + +RAT G LPGVT+ ++ S+
Sbjct: 124 RCMVLGIPNVGKSSFINRLV------------GRRATKTGDLPGVTKGQQWIRLEG--SL 169
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D + G KLA++G++K+ V +A L L W N
Sbjct: 170 ELLDTPGILWPKFEDPQVGFKLAVTGAVKEQVFDVYEVALKL----------LQWLVETN 219
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
++ K Y L DL P R V + D+ G +R + VS G D
Sbjct: 220 PEKI-------KERYRLTDLNPDR--------VGLLSDI--GARRGMLVS-----GGAVD 257
Query: 316 ENDLESLIEQQF 327
E LI ++F
Sbjct: 258 ELKAAHLILKEF 269
>gi|257878019|ref|ZP_05657672.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257881195|ref|ZP_05660848.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257889782|ref|ZP_05669435.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257892281|ref|ZP_05671934.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260559069|ref|ZP_05831255.1| GTP-binding protein [Enterococcus faecium C68]
gi|261207603|ref|ZP_05922288.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289565115|ref|ZP_06445568.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|293556763|ref|ZP_06675326.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|293563421|ref|ZP_06677870.1| GTP-binding protein [Enterococcus faecium E1162]
gi|294614823|ref|ZP_06694718.1| GTP-binding protein [Enterococcus faecium E1636]
gi|294617502|ref|ZP_06697133.1| GTP-binding protein [Enterococcus faecium E1679]
gi|294622302|ref|ZP_06701345.1| GTP-binding protein [Enterococcus faecium U0317]
gi|383328502|ref|YP_005354386.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|415896304|ref|ZP_11550792.1| GTP-binding protein [Enterococcus faecium E4453]
gi|427395155|ref|ZP_18888077.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430820383|ref|ZP_19439016.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430828355|ref|ZP_19446477.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430830304|ref|ZP_19448362.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430833511|ref|ZP_19451523.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430836213|ref|ZP_19454197.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430838884|ref|ZP_19456827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430844507|ref|ZP_19462405.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430846488|ref|ZP_19464347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430850088|ref|ZP_19467854.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430854405|ref|ZP_19472118.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430858559|ref|ZP_19476186.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430861967|ref|ZP_19479319.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430958963|ref|ZP_19486827.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|431010066|ref|ZP_19489591.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|431194415|ref|ZP_19500268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|431228379|ref|ZP_19501520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|431259159|ref|ZP_19505336.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|431295455|ref|ZP_19507343.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|431368594|ref|ZP_19509408.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|431434730|ref|ZP_19513049.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|431503033|ref|ZP_19515269.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|431539213|ref|ZP_19517717.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|431626776|ref|ZP_19523015.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|431745763|ref|ZP_19534602.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|431748729|ref|ZP_19537484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|431754408|ref|ZP_19543069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|431758890|ref|ZP_19547510.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|431766316|ref|ZP_19554807.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|431766776|ref|ZP_19555237.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|431770395|ref|ZP_19558795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|431772916|ref|ZP_19561252.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|431776217|ref|ZP_19564484.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|431778326|ref|ZP_19566537.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|431782317|ref|ZP_19570453.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
gi|431785297|ref|ZP_19573323.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|257812247|gb|EEV41005.1| GTP-binding protein [Enterococcus faecium 1,230,933]
gi|257816853|gb|EEV44181.1| GTP-binding protein [Enterococcus faecium 1,231,502]
gi|257826142|gb|EEV52768.1| GTP-binding protein [Enterococcus faecium 1,231,410]
gi|257828660|gb|EEV55267.1| GTP-binding protein [Enterococcus faecium 1,231,408]
gi|260074826|gb|EEW63142.1| GTP-binding protein [Enterococcus faecium C68]
gi|260077986|gb|EEW65692.1| GTP-binding protein [Enterococcus faecium TC 6]
gi|289163122|gb|EFD10969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
D344SRF]
gi|291592285|gb|EFF23899.1| GTP-binding protein [Enterococcus faecium E1636]
gi|291596242|gb|EFF27504.1| GTP-binding protein [Enterococcus faecium E1679]
gi|291598194|gb|EFF29292.1| GTP-binding protein [Enterococcus faecium U0317]
gi|291601095|gb|EFF31384.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1039]
gi|291604682|gb|EFF34167.1| GTP-binding protein [Enterococcus faecium E1162]
gi|364091113|gb|EHM33616.1| GTP-binding protein [Enterococcus faecium E4453]
gi|378938196|gb|AFC63268.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
Aus0004]
gi|425724291|gb|EKU87175.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus durans
FB129-CNAB-4]
gi|430439619|gb|ELA49952.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0045]
gi|430482906|gb|ELA60005.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0333]
gi|430483650|gb|ELA60718.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0269]
gi|430486252|gb|ELA63111.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0679]
gi|430488787|gb|ELA65441.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0680]
gi|430491285|gb|ELA67758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E0688]
gi|430497097|gb|ELA73156.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1050]
gi|430536120|gb|ELA76497.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1185]
gi|430538935|gb|ELA79204.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1133]
gi|430545186|gb|ELA85172.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1552]
gi|430548064|gb|ELA87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1392]
gi|430549258|gb|ELA89090.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1573]
gi|430556648|gb|ELA96145.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1576]
gi|430560561|gb|ELA99857.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1578]
gi|430572084|gb|ELB10954.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1620]
gi|430574681|gb|ELB13444.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1622]
gi|430577254|gb|ELB15859.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1623]
gi|430581545|gb|ELB19990.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1626]
gi|430584182|gb|ELB22532.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1627]
gi|430587374|gb|ELB25605.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1630]
gi|430587656|gb|ELB25877.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1634]
gi|430594476|gb|ELB32445.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1731]
gi|430603030|gb|ELB40573.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1904]
gi|430609969|gb|ELB47141.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2134]
gi|430613055|gb|ELB50078.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2297]
gi|430619002|gb|ELB55830.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2883]
gi|430626853|gb|ELB63403.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E3346]
gi|430626899|gb|ELB63443.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4215]
gi|430632011|gb|ELB68302.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1321]
gi|430635322|gb|ELB71418.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1644]
gi|430637432|gb|ELB73448.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2369]
gi|430641551|gb|ELB77352.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E2560]
gi|430643872|gb|ELB79575.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E4389]
gi|430647784|gb|ELB83223.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6045]
gi|430647954|gb|ELB83389.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E6012]
Length = 286
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|373464336|ref|ZP_09555875.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
gi|371762538|gb|EHO51067.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
kisonensis F0435]
Length = 292
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + L + D+V EV D+RIP SS +P ++ + K + + K+DL
Sbjct: 5 IQWFPGHMAKAIRQFEENLSLVDIVFEVIDARIPYSSQNPEIKRISADKPHLFIMTKRDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + W+R+F KQ IAI+A ++ + ++ ++ LK + RE +
Sbjct: 65 ADPKMTASWLRYFKEIKQPAIAIDAKTQFGINNVISVISPILKAKLQREEDKGMKKRPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VGVPNVGKS ++N + ++R + A VG PGVT+ K + + +
Sbjct: 125 AISVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGVTKGQQWLKSGSK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P + E KLAL+G+IKDSV + IA + L
Sbjct: 172 LDTPGILWPKFANQEIANKLALTGAIKDSVFHSDDIALFAL 212
>gi|167768003|ref|ZP_02440056.1| hypothetical protein CLOSS21_02546 [Clostridium sp. SS2/1]
gi|317498403|ref|ZP_07956698.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429761259|ref|ZP_19293689.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
gi|167710332|gb|EDS20911.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
SS2/1]
gi|291561005|emb|CBL39805.1| ribosome biogenesis GTP-binding protein YlqF [butyrate-producing
bacterium SSC/2]
gi|316894297|gb|EFV16484.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_63FAA]
gi|429184283|gb|EKY25306.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes hadrus
DSM 3319]
Length = 286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 28/249 (11%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ D++IE+ D+RIPLSS +P + + K R+I LNK D
Sbjct: 2 DFQWYPGHMTKAKRMMQENMKLIDIMIELVDARIPLSSRNPDIDQLAANKSRLILLNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIA-INAHSRSSVQKLLELVELKLKEVISREPT------- 135
+A+ + +W +F K Y+A NA S V+ +V KE + R+
Sbjct: 62 MADERVTAQWEEYFKE-KGFYVARTNARSGKGVKGTQAIVMDACKEKLERDRKRGIKNRP 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+ G+PNVGKS INS+ A ++ G PGVT+ K+ +I
Sbjct: 121 IRAMIAGIPNVGKSTFINSLVGKACTK-----------TGNKPGVTKGKQWIKL--NKNI 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRH-LN 254
+LDTPG+L P D + GL+LAL GSI+D ++ ++ +A L+ L H++ L
Sbjct: 168 ELLDTPGILWPKFEDQQVGLRLALIGSIRDEILNQDEMAIELIEYLKN-----HYQGILA 222
Query: 255 NRTEVSQSE 263
+R +V ++E
Sbjct: 223 DRYQVDENE 231
>gi|257887693|ref|ZP_05667346.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257896187|ref|ZP_05675840.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430852787|ref|ZP_19470518.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|431070188|ref|ZP_19494196.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|431582091|ref|ZP_19520040.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
gi|257823747|gb|EEV50679.1| GTP-binding protein [Enterococcus faecium 1,141,733]
gi|257832752|gb|EEV59173.1| GTP-binding protein [Enterococcus faecium Com12]
gi|430541621|gb|ELA81766.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1258]
gi|430567698|gb|ELB06773.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1604]
gi|430593981|gb|ELB31951.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecium
E1861]
Length = 286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|417989648|ref|ZP_12630150.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
gi|410537741|gb|EKQ12311.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei
A2-362]
Length = 286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K D+V+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDIVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARCIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|257898824|ref|ZP_05678477.1| GTP-binding protein [Enterococcus faecium Com15]
gi|257836736|gb|EEV61810.1| GTP-binding protein [Enterococcus faecium Com15]
Length = 286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSRNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|227518839|ref|ZP_03948888.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227553456|ref|ZP_03983505.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229545736|ref|ZP_04434461.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|229549925|ref|ZP_04438650.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|293382907|ref|ZP_06628825.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|293389604|ref|ZP_06634061.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|307270932|ref|ZP_07552215.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|307274872|ref|ZP_07556035.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|307277979|ref|ZP_07559063.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|307291910|ref|ZP_07571779.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|312899501|ref|ZP_07758831.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|312907623|ref|ZP_07766614.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|312910240|ref|ZP_07769087.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|312951584|ref|ZP_07770480.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|384513330|ref|YP_005708423.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|422685902|ref|ZP_16744115.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|422692935|ref|ZP_16750950.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|422695067|ref|ZP_16753055.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|422699129|ref|ZP_16757002.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|422701845|ref|ZP_16759685.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|422704561|ref|ZP_16762371.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|422706577|ref|ZP_16764275.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|422708558|ref|ZP_16766086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|422714534|ref|ZP_16771260.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|422715792|ref|ZP_16772508.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|422719008|ref|ZP_16775659.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|422722435|ref|ZP_16778985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|422727138|ref|ZP_16783581.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|422728820|ref|ZP_16785226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|422733485|ref|ZP_16789787.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|422734226|ref|ZP_16790520.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|422739090|ref|ZP_16794273.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|422869271|ref|ZP_16915791.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|424673132|ref|ZP_18110075.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|424676678|ref|ZP_18113549.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|424681506|ref|ZP_18118293.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|424683696|ref|ZP_18120446.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|424686400|ref|ZP_18123068.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|424690328|ref|ZP_18126863.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|424695421|ref|ZP_18131804.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|424696840|ref|ZP_18133181.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|424699774|ref|ZP_18135985.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|424703213|ref|ZP_18139347.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|424707290|ref|ZP_18143274.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|424717050|ref|ZP_18146348.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|424720628|ref|ZP_18149729.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|424724176|ref|ZP_18153125.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|424733767|ref|ZP_18162322.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|424743934|ref|ZP_18172239.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|424750558|ref|ZP_18178622.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|430360682|ref|ZP_19426403.1| GTP-binding protein [Enterococcus faecalis OG1X]
gi|227073710|gb|EEI11673.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|227177413|gb|EEI58385.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|229304938|gb|EEN70934.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|229309186|gb|EEN75173.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|291079572|gb|EFE16936.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
R712]
gi|291081221|gb|EFE18184.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
S613]
gi|306496908|gb|EFM66456.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0411]
gi|306505376|gb|EFM74562.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0860]
gi|306508320|gb|EFM77427.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2134]
gi|306512430|gb|EFM81079.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4248]
gi|310626651|gb|EFQ09934.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 512]
gi|310630550|gb|EFQ13833.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0102]
gi|311289513|gb|EFQ68069.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
DAPTO 516]
gi|311293371|gb|EFQ71927.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0470]
gi|315027180|gb|EFT39112.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2137]
gi|315029297|gb|EFT41229.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4000]
gi|315034057|gb|EFT45989.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0017]
gi|315037066|gb|EFT48998.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0027]
gi|315145133|gb|EFT89149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX2141]
gi|315147350|gb|EFT91366.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX4244]
gi|315150450|gb|EFT94466.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0012]
gi|315152394|gb|EFT96410.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0031]
gi|315155666|gb|EFT99682.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0043]
gi|315158163|gb|EFU02180.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0312]
gi|315160533|gb|EFU04550.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0645]
gi|315164102|gb|EFU08119.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1302]
gi|315168948|gb|EFU12965.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1341]
gi|315169818|gb|EFU13835.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1342]
gi|315172217|gb|EFU16234.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1346]
gi|315575778|gb|EFU87969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309B]
gi|315580430|gb|EFU92621.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0309A]
gi|327535219|gb|AEA94053.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
OG1RF]
gi|329571608|gb|EGG53289.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX1467]
gi|402351213|gb|EJU86105.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV116]
gi|402352942|gb|EJU87778.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
599]
gi|402356298|gb|EJU91032.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV103]
gi|402364455|gb|EJU98891.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV31]
gi|402364694|gb|EJU99129.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV129]
gi|402367254|gb|EJV01595.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV25]
gi|402368359|gb|EJV02675.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV37]
gi|402375703|gb|EJV09683.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV62]
gi|402377169|gb|EJV11080.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV41]
gi|402384888|gb|EJV18429.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV65]
gi|402385218|gb|EJV18758.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV63]
gi|402386398|gb|EJV19904.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV68]
gi|402391097|gb|EJV24413.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV81]
gi|402393099|gb|EJV26329.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV72]
gi|402395660|gb|EJV28747.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV73]
gi|402399610|gb|EJV32476.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV85]
gi|402406536|gb|EJV39086.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
ERV93]
gi|429512797|gb|ELA02394.1| GTP-binding protein [Enterococcus faecalis OG1X]
Length = 292
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 11 TIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 71 LADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAI 130
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS L+N + K A G PGVT+ + + +
Sbjct: 131 RAMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LE 177
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 178 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 222
>gi|295091814|emb|CBK77921.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium cf.
saccharolyticum K10]
Length = 292
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 25/237 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PL S +P + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARMPLGSRNPDIDELAKGKGRMVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + +W F I INA + ++++ +V+ +E I R+ +
Sbjct: 62 LADERMNEQWTSWFKERGFHVIKINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNR--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
+LDTPG+L P D GL LA GSI D ++ + +A L L +H+R +
Sbjct: 169 LLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKTELAAELADFL-----MIHYREM 220
>gi|238916978|ref|YP_002930495.1| hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
gi|238872338|gb|ACR72048.1| Hypothetical protein EUBELI_01047 [Eubacterium eligens ATCC 27750]
Length = 303
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R++ LNK DL
Sbjct: 12 INWYPGHMTKARRMMEEDIKLVDLVIEIVDARIPLSSRNPDIDKLAKNKARIVLLNKSDL 71
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ + ++W+ +F + +N+ S + + L+ + I R+ ++
Sbjct: 72 ADDTVTDEWITYFKDKGFYCLKLNSRLNVSNRAVNNLITVACSAKIERDRARGIKNRSIK 131
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS INS K A G PGVT+ +I S+ +
Sbjct: 132 AMIVGIPNVGKSTFINSFTG-----------RKSAKTGNKPGVTKGKQWIRI--NGSVEL 178
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P I D G +LA+ GSI D ++ E +A + L P L +R
Sbjct: 179 LDTPGILWPKIEDRNVGERLAMIGSINDQILNIEELALETIKFLKKNYQP----QLYSRY 234
Query: 258 EVSQSETEN 266
++++ +N
Sbjct: 235 DITEDIFDN 243
>gi|238855691|ref|ZP_04645988.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 269-3]
gi|260664446|ref|ZP_05865298.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii SJ-7A-US]
gi|313472153|ref|ZP_07812645.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 1153]
gi|238831676|gb|EEQ24016.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 269-3]
gi|239529525|gb|EEQ68526.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 1153]
gi|260561511|gb|EEX27483.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii SJ-7A-US]
Length = 280
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P + + K +I LNK DL
Sbjct: 3 IQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+PN +NKW S + + ++A +++ L +L++L KE I + PT+
Sbjct: 63 ADPNEINKWEAKLKSDGKFVLKLDAQHNTNMTPLFKLIKLAAKERIDKLEAKGASNPTIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ +VG+PN GKS +IN + + R A VG PGVT+ + K + S+ +
Sbjct: 123 ICLVGIPNCGKSTIINRL----VGR-------NVAIVGDRPGVTKGQSWLKTSE--SVQI 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G +LA GSIK+SV + +A +++ L
Sbjct: 170 LDTPGILWPKFEDQAVGFRLAALGSIKESVFHADDVALFVMEYL 213
>gi|253681828|ref|ZP_04862625.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
gi|253561540|gb|EES90992.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium botulinum
D str. 1873]
Length = 280
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK D+VIE+RD+RI SSA+P + K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRREIKENLKFVDIVIEIRDARIVKSSANPDIDDICKNKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + +W++ + +N + + + ++ LKE R T
Sbjct: 63 SEEKVTKEWIKKLSNEFIRVANVNCVTGKGLNSIKPMINDLLKEKHDRLRAKGVVNITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS+ IN + + A VG PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSSFINKMA-----------RNNTAKVGDKPGVTKNKQWIK--TKMGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D + GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 LDTPGVLWPKFQDEQVGLNLAFTGAIKDEIMDIETLAFKLIEKL 213
>gi|242242527|ref|ZP_04796972.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|420174987|ref|ZP_14681433.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|420191708|ref|ZP_14697619.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
gi|242233954|gb|EES36266.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|394244520|gb|EJD89862.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM061]
gi|394265859|gb|EJE10506.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM023]
Length = 287
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDISALKKHYN 226
>gi|255657929|ref|ZP_05403338.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
gi|260850122|gb|EEX70129.1| ribosome biogenesis GTP-binding protein YlqF [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ LK+ D+VIE+ D+RIP SSA+P L + K R+IALNK D
Sbjct: 11 GIQWFPGHMKKAQRLIEENLKLVDVVIELLDARIPASSANPMLAEIIKGKPRLIALNKSD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVI---SREPTL 136
LA+ +W+ +F + +AI++ +++L+ EL K + R
Sbjct: 71 LADAASTKRWLAYFRAQGIPAVAIDSVKGRGMKQLVAKAEELARPKTDRFVKAGGRPRAA 130
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN + +A PGVT+ KI ++
Sbjct: 131 RCMILGIPNVGKSSLINRLAGAV-----------KAKAADKPGVTRAKQWIKIGA--ALD 177
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GLKLA +G+I D + E++ LL+V+
Sbjct: 178 LLDTPGILWPKFEDQTVGLKLAFTGAINDEIYDREQVTALLLSVM 222
>gi|197303273|ref|ZP_03168314.1| hypothetical protein RUMLAC_01996 [Ruminococcus lactaris ATCC
29176]
gi|197297699|gb|EDY32258.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus lactaris
ATCC 29176]
Length = 282
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 27/258 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA ++W+ +F + +N+ ++ + +++ KE + R+ +
Sbjct: 62 LAEDRRNDEWLEYFKEKGYSAVKVNSRKGGGIKSIQNVIQEACKEKMERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP------LHW 250
+LDTPG+L P D GLKLA GSIKD ++ E +A L+ +N R P
Sbjct: 169 LLDTPGILWPKFEDQAVGLKLAFIGSIKDEILQTEELASELVDFIN-RSYPGVLEEKYAI 227
Query: 251 RHLNNRTEVSQSETENKH 268
H +++ EV + +++H
Sbjct: 228 EHSDDKFEVLEKIAQSRH 245
>gi|307273137|ref|ZP_07554383.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|312903394|ref|ZP_07762574.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|422689281|ref|ZP_16747393.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
gi|306510122|gb|EFM79146.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0855]
gi|310633270|gb|EFQ16553.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0635]
gi|315577620|gb|EFU89811.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0630]
Length = 292
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 11 TIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 71 LADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAI 130
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS L+N + K A G PGVT+ + + +
Sbjct: 131 RAMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LE 177
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 178 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 222
>gi|289423553|ref|ZP_06425354.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius 653-L]
gi|429728184|ref|ZP_19262924.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius VPI 4330]
gi|289156055|gb|EFD04719.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius 653-L]
gi|429150375|gb|EKX93289.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
anaerobius VPI 4330]
Length = 295
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM +++ LK+ D+V+E+ D+RIPLSS +P + + K R+I LNK D
Sbjct: 14 NINWYPGHMKKTRELVQNNLKLVDIVVELLDARIPLSSKNPDIDRLVGDKPRIILLNKAD 73
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL-ELVEL------KLKEVISREPTL 136
+ L+KW+ +F S I INA + V KL+ E E+ KL E + +
Sbjct: 74 MCKKEDLDKWISYFSSEGVKAITINAMTGKGVDKLVSECREVTADMMEKLAEKGRNQRPI 133
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VGVPNVGKS+LIN + K G PGVT+ K+ R ++
Sbjct: 134 RLMIVGVPNVGKSSLINKLSG-----------RKSTQTGDRPGVTKGKQWVKV--RGNME 180
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D L LA + +IKD ++ E + L+ L
Sbjct: 181 LLDTPGILWPKFDDQRVALNLAFTRAIKDEILDIETLGLRLIERL 225
>gi|375091720|ref|ZP_09738008.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
gi|374562607|gb|EHR33934.1| ribosome biogenesis GTP-binding protein YlqF [Helcococcus kunzii
ATCC 51366]
Length = 283
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 128/248 (51%), Gaps = 24/248 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM + I+ LK+ D+V E+ DSRIP+SS +P + L R+I LNK D
Sbjct: 2 NINWYPGHMKKSIDKIRESLKLVDIVAEIVDSRIPISSRNPVIDKILGDFPRIIILNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSV-------QKLLELVELKLKEVISREPTL 136
+ANP KW+++F+ I N+ +K LE + K KE ++ T+
Sbjct: 62 MANPKETRKWIKYFNEKNISVIEFNSTKDKKTNDLYKIARKTLEPLFAKRKEKQIKDETI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+MVVG+PNVGKS IN++ Q K VG PGVT+ I ++
Sbjct: 122 KMMVVGIPNVGKSTFINNVSQ-----------RKGTKVGNRPGVTR--MNQWIRTSSNLL 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPGVL P + + G LA +G+IKD ++ E + L+ L + ++ L NR
Sbjct: 169 LLDTPGVLWPKLDLPDGGKNLAFTGAIKDEILEIEDLCFELIKKLQS----TYYEDLINR 224
Query: 257 TEVSQSET 264
+ T
Sbjct: 225 YGIENDLT 232
>gi|126698855|ref|YP_001087752.1| GTPase, MG442 type [Clostridium difficile 630]
gi|115250292|emb|CAJ68114.1| putative GTPase, MG442 type [Clostridium difficile 630]
Length = 289
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 7 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + K++E + +E +S +E +
Sbjct: 67 ADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 127 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 174 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKL 217
>gi|256965039|ref|ZP_05569210.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|257089970|ref|ZP_05584331.1| GTP-binding protein [Enterococcus faecalis CH188]
gi|256955535|gb|EEU72167.1| GTP-binding protein [Enterococcus faecalis HIP11704]
gi|256998782|gb|EEU85302.1| GTP-binding protein [Enterococcus faecalis CH188]
Length = 283
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 62 LADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS L+N + K A G PGVT+ + + +
Sbjct: 122 RAMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 213
>gi|256762585|ref|ZP_05503165.1| GTP-binding protein, partial [Enterococcus faecalis T3]
gi|256683836|gb|EEU23531.1| GTP-binding protein [Enterococcus faecalis T3]
Length = 278
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK DL
Sbjct: 18 IQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDL 77
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 78 ADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIR 137
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + K A G PGVT+ + + + +
Sbjct: 138 AMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LEL 184
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 185 LDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 228
>gi|399889398|ref|ZP_10775275.1| GTPase YlqF [Clostridium arbusti SL206]
Length = 284
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK+ D VIE+RDSRI SSA+P + K R+I LNK DL
Sbjct: 5 INWFPGHMAKTRREIKENLKLVDAVIEIRDSRIVQSSANPEINTICKDKPRIILLNKCDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
+ + W+ +AIN+ + ++ + ++ LKE I R +
Sbjct: 65 SEEKVTKAWINTLSKDNVRALAINSLNGIGLKNIKGELDNLLKEKIDRLKQKGVMNVIIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS+ IN + K A +G PGVT+ K + I +
Sbjct: 125 VMVVGIPNVGKSSFINKMA-----------KNTAAKIGDKPGVTRTKQWIK--TKIGIEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P + + GL LA +G+IKD ++ E +A L+ L
Sbjct: 172 MDTPGVLWPKFEEKKVGLNLAFTGAIKDEIMDVEELALNLVERL 215
>gi|417092810|ref|ZP_11957364.1| GTP1/OBG protein [Streptococcus suis R61]
gi|353532170|gb|EHC01844.1| GTP1/OBG protein [Streptococcus suis R61]
Length = 283
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +++V+K+ + + +KE I R + TL
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKEKIERLRQRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|384135042|ref|YP_005517756.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289127|gb|AEJ43237.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 298
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 120/227 (52%), Gaps = 21/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + L+ D+V+E+ D+R+P+SS P L K R++ L + DL
Sbjct: 9 IQWFPGHMAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARHKPRLVVLTRIDL 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS----RSSVQKLLELVELKLKEVISREPTLLV-- 138
A+P ++WV F I +NA S R + L E+VE K+ +R V
Sbjct: 69 ADPRCTDRWVERFHREGVIAIPVNARSGQGLREFRRALDEVVEDKMDRARARGIERAVTR 128
Query: 139 -MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS +N + A+ A G PGVT+ + ++ H +
Sbjct: 129 GMICGIPNVGKSTFVNQLAGRAV-----------AKTGDRPGVTRALQWIRVGH---TEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPGVL P + + E GLKLA SG+IK+ + + Y+LA L+ R
Sbjct: 175 LDTPGVLAPKLANDEQGLKLAASGAIKEEIFEAYEVCAYVLAYLSGR 221
>gi|29376208|ref|NP_815362.1| GTPase [Enterococcus faecalis V583]
gi|255972708|ref|ZP_05423294.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255975760|ref|ZP_05426346.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256619149|ref|ZP_05475995.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256853211|ref|ZP_05558581.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256959065|ref|ZP_05563236.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256961842|ref|ZP_05566013.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|257079096|ref|ZP_05573457.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|257082465|ref|ZP_05576826.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|257085097|ref|ZP_05579458.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|257086658|ref|ZP_05581019.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257416179|ref|ZP_05593173.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257419381|ref|ZP_05596375.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257422525|ref|ZP_05599515.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294781633|ref|ZP_06746969.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|300861139|ref|ZP_07107226.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|384518682|ref|YP_005705987.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397699964|ref|YP_006537752.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|421512269|ref|ZP_15959079.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|428767091|ref|YP_007153202.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|430370587|ref|ZP_19429112.1| GTP-binding protein [Enterococcus faecalis M7]
gi|29343671|gb|AAO81432.1| GTPase of unknown function [Enterococcus faecalis V583]
gi|255963726|gb|EET96202.1| GTP-binding protein [Enterococcus faecalis T1]
gi|255968632|gb|EET99254.1| GTP-binding protein [Enterococcus faecalis T2]
gi|256598676|gb|EEU17852.1| GTP-binding protein [Enterococcus faecalis ATCC 4200]
gi|256711670|gb|EEU26708.1| GTP-binding protein [Enterococcus faecalis T8]
gi|256949561|gb|EEU66193.1| GTP-binding protein [Enterococcus faecalis DS5]
gi|256952338|gb|EEU68970.1| GTP-binding protein [Enterococcus faecalis Merz96]
gi|256987126|gb|EEU74428.1| GTP-binding protein [Enterococcus faecalis JH1]
gi|256990495|gb|EEU77797.1| GTP-binding protein [Enterococcus faecalis E1Sol]
gi|256993127|gb|EEU80429.1| GTP-binding protein [Enterococcus faecalis Fly1]
gi|256994688|gb|EEU81990.1| GTP-binding protein [Enterococcus faecalis D6]
gi|257158007|gb|EEU87967.1| GTP-binding protein [Enterococcus faecalis ARO1/DG]
gi|257161209|gb|EEU91169.1| GTP-binding protein [Enterococcus faecalis T11]
gi|257164349|gb|EEU94309.1| GTP-binding protein [Enterococcus faecalis X98]
gi|294451329|gb|EFG19795.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
PC1.1]
gi|295113050|emb|CBL31687.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus sp.
7L76]
gi|300850178|gb|EFK77928.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TUSoD Ef11]
gi|323480815|gb|ADX80254.1| ribosomal biogenesis GTPase [Enterococcus faecalis 62]
gi|397336603|gb|AFO44275.1| ribosomal biogenesis GTPase [Enterococcus faecalis D32]
gi|401674613|gb|EJS80961.1| 50S ribosomal subunit maturation GTPase RbgA ( YlqF) [Enterococcus
faecalis ATCC 29212]
gi|427185264|emb|CCO72488.1| GTP-binding protein [Enterococcus faecalis str. Symbioflor 1]
gi|429515351|gb|ELA04867.1| GTP-binding protein [Enterococcus faecalis M7]
Length = 283
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 62 LADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS L+N + K A G PGVT+ + + +
Sbjct: 122 RAMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 213
>gi|417925852|ref|ZP_12569267.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
gi|341590777|gb|EGS34008.1| ribosome biogenesis GTP-binding protein YlqF [Finegoldia magna
SY403409CC001050417]
Length = 285
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHM A IK +K+ D+V+ + DSRI SS +P ++ L K ++I LNK
Sbjct: 4 NNINWYPGHMKKAIDKIKENMKLVDIVLVLVDSRIVKSSMNPVIEDILKDKPQLILLNKM 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPT 135
D+A+P I W+ +F + I+ + ++ K+ + L++V+S +
Sbjct: 64 DMADPKITQNWINYFAKKNITALPIDGKNGKNLDKIEPTTKKILEDVLSNRKDKNIKSEI 123
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +M+VG+PNVGKS +IN + + A G PGVT+ +I + +
Sbjct: 124 IRMMIVGIPNVGKSTIINKLSN-----------RQSAKTGNTPGVTRTNQWIRIKGK--M 170
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D E GL LA +G+IKD ++ EE +A L+ L
Sbjct: 171 ELLDTPGVLWPKFEDNEIGLNLAFTGAIKDEILDEENLAYKLIEKL 216
>gi|420199029|ref|ZP_14704713.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
gi|394272715|gb|EJE17165.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM031]
Length = 287
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDESFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + + +++ G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLAKRSITE-----------TGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKKHYN 226
>gi|416134962|ref|ZP_11598423.1| GTP-binding protein [Enterococcus faecium E4452]
gi|364092392|gb|EHM34773.1| GTP-binding protein [Enterococcus faecium E4452]
Length = 286
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P L + K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKMKYVDIVFELVDARLPLSSHNPMLDQIIQQKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W +F +AI A ++ L+ + LKE +R+ +
Sbjct: 62 LADPQQTKLWQEYFRKQGHLALAITAQESKGIKGLVPAAKEALKEKRARDAARGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + V +K A G PGVT+ ++ + +
Sbjct: 122 RAMVLGIPNVGKSTLMNRL---------VGKKI--AQTGNKPGVTKGQQWLRLGN--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD +V + +A Y L
Sbjct: 169 LLDTPGILWPKFEDEEIGKKLALTGAIKDQLVHLDDLAIYGL 210
>gi|307289193|ref|ZP_07569149.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
gi|306499902|gb|EFM69263.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus faecalis
TX0109]
Length = 292
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + ++K D+V E+ D+R+PLSS +P + + K R++ LNK DL
Sbjct: 12 IQWFPGHMAKARREVSEKIKYVDIVFELVDARLPLSSRNPMMDQIVQQKPRLVLLNKGDL 71
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ + KW +F + INA + K++ + LKE ++RE +
Sbjct: 72 ADNDQNKKWQHYFQKKGYQTLVINAQQNKGINKIVPAAKEALKEKLAREQAKGLKPRAIR 131
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + K A G PGVT+ + + + +
Sbjct: 132 AMCIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRSGSQ--LEL 178
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KLAL+G+IKD ++ + +A Y L
Sbjct: 179 LDTPGILWPKFEDEEIGKKLALTGAIKDQLLHLDDLAIYGLEFF 222
>gi|389856593|ref|YP_006358836.1| GTP1/OBG protein [Streptococcus suis ST1]
gi|353740311|gb|AER21318.1| GTP1/OBG protein [Streptococcus suis ST1]
Length = 283
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +++V+K+ E + +K+ I R + TL
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTEAAKSLMKDKIERLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|344304077|gb|EGW34326.1| hypothetical protein SPAPADRAFT_59741 [Spathaspora passalidarum
NRRL Y-27907]
Length = 368
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 18 FTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVI 77
F K +++ F GH A H + DLV+EVRD R PL++++ LS K++++
Sbjct: 9 FPKYNISLSNFKGHHQKALTKFGHLAPMIDLVVEVRDGRAPLATSNVLFDRVLSGKKKLV 68
Query: 78 ALNKKDLA--NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
+KKDL+ N +L+KW S +DY+ +N ++ + V+K++ ++ + + P
Sbjct: 69 LYSKKDLSIINTKLLDKW---HSSSNEDYMYVNCNNNTDVKKIINKIKQEYHDYDLPPPL 125
Query: 136 -LLVMVVGVPNVGKSALINSIHQIA--LSRFPV-QEKTKRATVGPLPGVTQDIAG-FKIA 190
L M++G+PNVGKS L+N + ++ +++ + Q++TK A VG PGVT++ + +I
Sbjct: 126 GLRAMIIGMPNVGKSTLVNKLREVGNPVNKNAISQKQTKVAKVGGQPGVTRNTSEVIRIC 185
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
P ++V DTPGV +P++ D ET L L L G + +S + +A YLL +LN
Sbjct: 186 KNPDLFVYDTPGVFLPTVKDPETMLTLGLVGCVHESFIDPIILADYLLYLLN 237
>gi|283798047|ref|ZP_06347200.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
M62/1]
gi|291074351|gb|EFE11715.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
M62/1]
Length = 292
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 25/237 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A RA+K +K+ DLVIE+ D+R+PL S +P + K R++ LNK D
Sbjct: 2 NIQWYPGHMTKAKRAMKEDIKLIDLVIELVDARMPLGSRNPDIDELARGKGRMVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ + +W F I INA + ++++ +V+ +E I R+ +
Sbjct: 62 LADERMNEQWTSWFKERGFHVIKINARTGMGLKQIHPMVQEACREKIERDRRRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNR--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
+LDTPG+L P D GL LA GSI D ++ + +A L L +H+R +
Sbjct: 169 LLDTPGILWPKFEDQTVGLNLAFIGSINDEIIDKTELAAELADFL-----MIHYREM 220
>gi|34849441|gb|AAP58940.1| putative GTPase [Spiroplasma kunkelii CR2-3x]
Length = 296
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 124/218 (56%), Gaps = 20/218 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI+WFPGHMA A + I + K+ DL+IE+ DSRIP SS++P + K ++I LNKKD
Sbjct: 4 NIHWFPGHMAKAIKQIDEQSKLIDLIIEIVDSRIPFSSSNPLVDNLRGLKPKLIILNKKD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + W +++ S + + +++ + + ++E + L I R P L
Sbjct: 64 LADPVAIKAWFKYYQSQQIAVLPLDSKHGNITKLIIEKIYFVLAGKIERNQNRGIKSPKL 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMV+G+PNVGKS IN++ ++ + R VG PGVT+ K+ H+ I
Sbjct: 124 KVMVIGIPNVGKSTFINAL---------IKRNSTR--VGNKPGVTKGQQWLKLNHQ--ID 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
++DTPG+L P I D + + LA SIK+ ++ +E I
Sbjct: 171 LVDTPGILWPKINDPQVAINLAFIRSIKEDILPKEEIC 208
>gi|334135573|ref|ZP_08509057.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
gi|333606909|gb|EGL18239.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus sp.
HGF7]
Length = 290
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 139/255 (54%), Gaps = 26/255 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+ IE+ D+RIP+SS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMTRARRQIEDKLKLIDVAIELLDARIPMSSRNPMVDDILKGKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
LA+P I +WV++F + I+A S + V+++L EL+ K++ + + P +
Sbjct: 62 LADPAITAEWVKYFTDQGLKALPIDASSGTGVKEILPRCKELMSAKIETQLRKGINPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PGVT+ K +
Sbjct: 122 RGLIVGIPNVGKSTLINQLA-----------GRKIANTGDKPGVTKGQQWIKFGT--DMD 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G+KLA +G+IK+ ++ + IA + + + T + L R
Sbjct: 169 LLDTPGILWPKFDDQNVGMKLAATGAIKEEILHLDDIAFHTIRYM----TEYYGERLKER 224
Query: 257 TEVSQ--SETENKHE 269
+ + +++EN +E
Sbjct: 225 YGIEELPADSENPNE 239
>gi|153930882|ref|YP_001384617.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
19397]
gi|153936572|ref|YP_001388134.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. Hall]
gi|168180677|ref|ZP_02615341.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|387818663|ref|YP_005679010.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|421833916|ref|ZP_16269084.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
gi|152926926|gb|ABS32426.1| GTP-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|152932486|gb|ABS37985.1| GTP-binding protein [Clostridium botulinum A str. Hall]
gi|182668420|gb|EDT80399.1| GTP-binding protein [Clostridium botulinum NCTC 2916]
gi|322806707|emb|CBZ04276.1| 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Clostridium botulinum H04402 065]
gi|409744796|gb|EKN43240.1| GTPase YlqF [Clostridium botulinum CFSAN001627]
Length = 292
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 128/236 (54%), Gaps = 36/236 (15%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYI---AINAHSRSSVQK----LLELVELK--------LKE 128
LA + KW+ DS QD I A+N+ + + K L EL++ K L +
Sbjct: 62 LAEDKVTKKWI---DSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVK 118
Query: 129 VISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188
++ R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 119 IVDR-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK 162
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 163 --TKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|226325141|ref|ZP_03800659.1| hypothetical protein COPCOM_02933 [Coprococcus comes ATCC 27758]
gi|225206489|gb|EEG88843.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus comes
ATCC 27758]
Length = 285
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P + K R+I LNK D
Sbjct: 2 NFQWYPGHMTKAKRMMQENIKLIDLVIELVDARVPMSSRNPDIDELGKNKARLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +W+ +F + +N+ ++ + +++ KE R+ +
Sbjct: 62 LADEKQTEEWIGYFRGKGYSAVKVNSRKGGGIKSIQGVIQEACKEKTERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + GL+LA GSIKD ++ E +A L++ +
Sbjct: 169 LLDTPGILWPKFEDQQVGLRLAFIGSIKDEIMNLEELAAELISFM 213
>gi|196008297|ref|XP_002114014.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
gi|190583033|gb|EDV23104.1| hypothetical protein TRIADDRAFT_58045 [Trichoplax adhaerens]
Length = 278
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 35/223 (15%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
++ W+PGHMA ++ L D V+EVRD+RIP SS + L+ + RV+ LNK D
Sbjct: 17 SVQWYPGHMAKGMHKMQAVLVRCDCVLEVRDARIPFSSRNEKFSRILAGRPRVLILNKAD 76
Query: 84 LANPN---ILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMV 140
L+ N I+ +R ++N H SS K + +MV
Sbjct: 77 LSAKNTRKIIPAALR----------SMNEHGISSDNK---------------KGFFRIMV 111
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLD 199
+G+PNVGKS++IN+I +I + K A VG +PG+T+ + ++ P +++D
Sbjct: 112 IGLPNVGKSSVINAIRRIR------KNKGNAAHVGGVPGITRAVQTNIEVCSNPKTFLVD 165
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPG++ + D+E G KLAL G+IKD ++GEE IA YLL LN
Sbjct: 166 TPGIMPTYVRDVEVGFKLALVGTIKDHLIGEEHIADYLLFTLN 208
>gi|168207942|ref|ZP_02633947.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|168215357|ref|ZP_02640982.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
gi|170660759|gb|EDT13442.1| GTP-binding protein [Clostridium perfringens E str. JGS1987]
gi|170713263|gb|EDT25445.1| GTP-binding protein [Clostridium perfringens CPE str. F4969]
Length = 281
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R I++ LK+ D VIE+RD+RIP SS +P + + K RVI LNK DL
Sbjct: 3 INWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+P + W + + + +NA + ++ KLL+ +LK + T
Sbjct: 63 TDPKVTKAWKESLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + K A G PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKNKQWIKT--KLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 MDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERL 213
>gi|148380400|ref|YP_001254941.1| ribosomal biogenesis GTPase [Clostridium botulinum A str. ATCC
3502]
gi|148289884|emb|CAL83992.1| putative GTPase [Clostridium botulinum A str. ATCC 3502]
Length = 292
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 128/236 (54%), Gaps = 36/236 (15%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYI---AINAHSRSSVQK----LLELVELK--------LKE 128
LA + KW+ DS QD I A+N+ + + K L EL++ K L +
Sbjct: 62 LAEDKVTKKWI---DSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVK 118
Query: 129 VISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188
++ R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 119 IVDR-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK 162
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 163 --TKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|257125138|ref|YP_003163252.1| HSR1-like GTP-binding protein [Leptotrichia buccalis C-1013-b]
gi|257049077|gb|ACV38261.1| GTP-binding protein HSR1-related [Leptotrichia buccalis C-1013-b]
Length = 291
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 160/352 (45%), Gaps = 75/352 (21%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I LKI D+VIE+ D+RIPLSS +P + + K+++I LNK D
Sbjct: 2 NINWYPGHMKKTKDLIVENLKIIDIVIEILDARIPLSSKNPDISKLANNKKKIIVLNKVD 61
Query: 84 LANPNILNKWVRHFDSCK-QDY-IAINAHSRSSVQKLLELVEL-------KLKEVISREP 134
L + L W +F K DY +A++ ++ +L ++ + K+K+ R+
Sbjct: 62 LVDSKELKVWEDYFLENKFSDYFVALSVEKGTNFNELRKITDKIYAEKLEKMKKKGLRKT 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ M+VG+PNVGKS IN +A VG PG T+ KI +
Sbjct: 122 EVRAMIVGIPNVGKSKFINKFVN-----------KNKARVGNTPGFTRGKQWIKIDEK-- 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ +LDTPGVL P D E LA++GSIKD+V+ E+IA L L G ++
Sbjct: 169 LELLDTPGVLWPKFEDDEVAYNLAITGSIKDNVLPLEQIAMKFLDKLKDLG------KID 222
Query: 255 NRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVE 314
N +V YNL++ N+
Sbjct: 223 NLIKV----------YNLQE-------------------------------------NIN 235
Query: 315 DENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
E L+ + EVL++ L I ++S++ + +R GK+G F L+
Sbjct: 236 TEEILKMENHKILEVLEKRLGISKNDEHNYEIISRRLIRDYRIGKIGKFFLE 287
>gi|427414160|ref|ZP_18904350.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
gi|425714536|gb|EKU77539.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella ratti
ACS-216-V-Col6b]
Length = 306
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR IK +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 12 VHWFPGHMAKATRMIKEYVKKVDVVIELLDARIPRSSANPVISEVVGQKPHIVVLNKADL 71
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
ANP +WV +F+ +AI++ + ++L++ VE + +I R ++
Sbjct: 72 ANPQATKEWVAYFEKQGLTVLAIDSKTGKGNKQLVKAVERLAQPIIDKWKNKGIRSRSVR 131
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LIN + A +R PG T+ KI + +
Sbjct: 132 TIILGIPNVGKSTLINKLAGAAATR-----------TADKPGHTRGQQWVKIGK--DLEL 178
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPGVL P + D +LA++G+I D V E + + LL +N
Sbjct: 179 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLESVMKQLLNQVN 223
>gi|283768288|ref|ZP_06341200.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
gi|283104680|gb|EFC06052.1| ribosome biogenesis GTP-binding protein YlqF [Bulleidia extructa
W1219]
Length = 286
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 21/219 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R + ++K+ D+VIE RD+RIPL+S +P + + K R+I L K D
Sbjct: 3 NIQWYPGHMEKARREMSEKVKVVDMVIECRDARIPLASKNPLIDQLIGQKPRLILLTKID 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK-----LLELVELKLKEVISR--EPT- 135
LA+P + +W+R+FD Q IA+N QK L+L + K + SR EP
Sbjct: 63 LADPIKIKEWIRYFDRENQKAIAVNMKKGQGFQKEIVSACLKLNQKKRDKQRSRGIEPRP 122
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ MV G+PNVGKS LIN I R V PGVT+ + A R +
Sbjct: 123 IRAMVCGIPNVGKSTLINRI-----------SGKNRLEVANRPGVTRSLTWLH-ADR-EL 169
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
+LDTPGVL P D G LA+ GSI + ++ ++ IA
Sbjct: 170 DLLDTPGVLWPKFEDQRVGSLLAVLGSINEDILDQKFIA 208
>gi|226949795|ref|YP_002804886.1| ribosomal biogenesis GTPase [Clostridium botulinum A2 str. Kyoto]
gi|226844044|gb|ACO86710.1| GTP-binding protein [Clostridium botulinum A2 str. Kyoto]
Length = 292
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
LA + KW+ +A+N+ + + K+ + LKE R +
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIVD 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K + I
Sbjct: 122 RVMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--TKIDIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 169 LMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|169342657|ref|ZP_02863699.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
gi|169299163|gb|EDS81233.1| GTP-binding protein [Clostridium perfringens C str. JGS1495]
Length = 281
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R I++ LK+ D VIE+RD+RIP SS +P + + K RVI LNK DL
Sbjct: 3 INWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+P + W + + + +NA + ++ KLL+ +LK + T
Sbjct: 63 TDPKVTKAWKNSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + K A G PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKNKQWIKT--KLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 MDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERL 213
>gi|381210003|ref|ZP_09917074.1| hypothetical protein LGrbi_08796 [Lentibacillus sp. Grbi]
Length = 284
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK++D VIE+ D+R PLSS +P LQ L K ++I + KKDL
Sbjct: 3 IQWFPGHMAKAKREVEEKLKLTDFVIELVDARTPLSSQNPMLQNVLQQKLKMIVMMKKDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE---------LVELKLKEVISREPT 135
A+ + KW+ ++ IAI+ +S+S ++ +++ + +LK K V R
Sbjct: 63 ADNRMTEKWLSYYKGRGIPAIAIDVNSKSDIKCVVQTAKDLGQTKMDKLKRKGVNPRPAR 122
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
M++G+PNVGKS LIN + K A +G PGVT+ K+ +
Sbjct: 123 --AMIIGIPNVGKSTLINRLAN-----------KKIAQIGDKPGVTKKQQWIKV--KGDF 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G +LA G+IKD ++ + + +++ +
Sbjct: 168 ELLDTPGILWPKFEDERVGYRLAAVGTIKDQLLPLDDVVAFVIQYM 213
>gi|257869679|ref|ZP_05649332.1| GTP-binding protein [Enterococcus gallinarum EG2]
gi|257803843|gb|EEV32665.1| GTP-binding protein [Enterococcus gallinarum EG2]
Length = 289
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK D+V E+ D+R+P+SS +P L L K R+I +NK D
Sbjct: 3 TIQWFPGHMAKAKREVSEKLKFVDIVFELVDARLPISSRNPMLDQILQQKPRLILINKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P W +F +AINA ++ ++ + L+E I+R+ +
Sbjct: 63 LADPQQTKLWEGYFRKQGFLAMAINAQDSQGIKMIVPKAKEVLQEKIARDKARGLKPRPI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ + +
Sbjct: 123 RAMVIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRFGT--ELE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD ++ + IA + L
Sbjct: 170 LLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGL 211
>gi|449881531|ref|ZP_21784505.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
gi|449251169|gb|EMC49193.1| ribosomal biogenesis GTPase [Streptococcus mutans SA38]
Length = 283
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ +W F +A+N+ +S+V+K+ E + +KL+E ++ T
Sbjct: 62 DLADSTCTAEWCNFFKKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M+VG+PNVGKS L+N + K A VG PGVT+ K ++
Sbjct: 122 LRTMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 169 EILDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|417788285|ref|ZP_12435968.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|417810322|ref|ZP_12457001.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|418961322|ref|ZP_13513209.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
gi|334308462|gb|EGL99448.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
salivarius NIAS840]
gi|335349118|gb|EGM50618.1| GTP-binding protein [Lactobacillus salivarius GJ-24]
gi|380344989|gb|EIA33335.1| GTP-binding protein [Lactobacillus salivarius SMXD51]
Length = 285
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 132/253 (52%), Gaps = 33/253 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R +K LK D+V+E+ D+R+P SS +P L L K +I L K DL
Sbjct: 4 IQWFPGHMAKALRQVKENLKSVDIVLELVDARLPESSRNPQLAEVLQDKPSIIVLTKMDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP------TLLV 138
A+P KW+ +++S Q IA+N++S + ++ E+ ++ SR+ L
Sbjct: 64 ADPAETKKWINYYESMGQPAIAVNSNSGNLKIIEKKIKEILADKLQSRKEKGIQNQKLRA 123
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M +G+PNVGKS L+N + K A G PGVT+ K + +L
Sbjct: 124 MCIGIPNVGKSTLLNHL-----------VKKNVAQTGNRPGVTKAQQWLKAGK--DLQLL 170
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN---- 254
DTPG+L P D G KLAL+G+IKD++ ++ +A Y + H+ H N
Sbjct: 171 DTPGILWPKFEDPLVGKKLALTGAIKDTLYAKDDVALYAVE---------HFIHTNPDAL 221
Query: 255 -NRTEVSQSETEN 266
R ++QSE E+
Sbjct: 222 AQRYRLTQSEIED 234
>gi|408410159|ref|ZP_11181400.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
gi|407875678|emb|CCK83206.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
66c]
Length = 283
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+V+E+ D+RIPLSS +P ++ + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLSLIDVVVEILDARIPLSSRNPMIEELVGNKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A ++VQ L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNVQALVTLIKKASSEKVKKLEERGASNPIVR 123
Query: 138 VMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +VGVPN GKS +IN + H +A++ G PGVT+ A K + I
Sbjct: 124 IALVGVPNCGKSTIINRLVGHNVAIT-------------GDKPGVTKGQAWLKTNY--GI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + G KLA G+IKD++ + +A +++ +L
Sbjct: 169 QILDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHADDVALFVIRLL 214
>gi|418189390|ref|ZP_12825905.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|419495334|ref|ZP_14035052.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|421303334|ref|ZP_15753998.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
gi|353856532|gb|EHE36501.1| hypothetical protein SPAR94_1149 [Streptococcus pneumoniae GA47373]
gi|379595416|gb|EHZ60224.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47461]
gi|395901956|gb|EJH12892.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17484]
Length = 283
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWCQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|404492367|ref|YP_006716473.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
gi|77544470|gb|ABA88032.1| ribosomal biogenesis GTPase [Pelobacter carbinolicus DSM 2380]
Length = 280
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 15/214 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM +A + I + DLVIEV D+R+P++S++P L K + LNK DL
Sbjct: 2 INWFPGHMHSARQQIAEAMPKIDLVIEVLDARLPMASSNPLLAEMRGVKPCIKVLNKNDL 61
Query: 85 ANPNILNKWVRHFDSCKQDY--IAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVG 142
A+P + +WVR F+S + +AINA ++ + +L+ L + L +M+VG
Sbjct: 62 ADPEVTGEWVRFFESRGKGMKALAINATRKAELTRLVRLSRSLVPHRGGPGKPLRIMIVG 121
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKS LIN++ K A VG P +T+ + ++ R I + DTPG
Sbjct: 122 IPNVGKSTLINTLC-----------GRKIAKVGDKPAITR--SAQQVDLRNGILLFDTPG 168
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
VL P++ D + LA +G+I D+ + ERIA +
Sbjct: 169 VLAPNLEDQRGAMCLAATGAIGDNAMDHERIAAF 202
>gi|15673276|ref|NP_267450.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. lactis
Il1403]
gi|385830824|ref|YP_005868637.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
gi|12724271|gb|AAK05392.1|AE006361_8 GTP-binding protein [Lactococcus lactis subsp. lactis Il1403]
gi|326406832|gb|ADZ63903.1| Ribosome biogenesis GTPase A [Lactococcus lactis subsp. lactis
CV56]
Length = 282
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ N + +W+ FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSNAVAQWIEFFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|52080207|ref|YP_078998.1| ribosomal biogenesis GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646014|ref|ZP_08000244.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|404489095|ref|YP_006713201.1| GTPase YlqF [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682148|ref|ZP_17656987.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
gi|81609173|sp|Q65JP4.1|RBGA_BACLD RecName: Full=Ribosome biogenesis GTPase A
gi|52003418|gb|AAU23360.1| GTP-binding domain protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348086|gb|AAU40720.1| GTPase RbgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391764|gb|EFV72561.1| YlqF protein [Bacillus sp. BT1B_CT2]
gi|383438922|gb|EID46697.1| ribosomal biogenesis GTPase [Bacillus licheniformis WX-02]
Length = 283
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TLL 137
A+ ++ W +HF+ +AIN+ + + ++L EL++ K ++ ++ +P +
Sbjct: 63 ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++VG+PNVGKS LIN + K A G PGVT K+ + +
Sbjct: 123 ALIVGIPNVGKSTLINRLA-----------KKNIAKTGDRPGVTTAQQWVKVGK--ELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL+LA +G+IKDS++ + +A Y L L
Sbjct: 170 LDTPGILWPKFEDELVGLRLAATGAIKDSIINLQDVAVYGLRFL 213
>gi|260588680|ref|ZP_05854593.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|331081971|ref|ZP_08331099.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260541155|gb|EEX21724.1| ribosome biogenesis GTP-binding protein YlqF [Blautia hansenii DSM
20583]
gi|330405566|gb|EGG85096.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 281
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 20/209 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ DL+IEV D+RIP SS +P + K R+I LNK D
Sbjct: 2 NYQWYPGHMTKAKRMMQENIKLIDLIIEVVDARIPFSSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ KW +F S + +NA S + ++ +L +V KE + R+ +
Sbjct: 62 LADERENEKWAEYFKSKGYYVVKLNAKSGAGIKGVLPVVMESCKEKLERDRKRGIINRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN+ A ++ G PGVT+ +I ++
Sbjct: 122 RAMVVGIPNVGKSTFINAFAGKACTK-----------TGNKPGVTKGKQWIRI--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKD 225
+LDTPG+L P D G KLA+ GSIKD
Sbjct: 169 LLDTPGILWPKFEDQSVGAKLAMVGSIKD 197
>gi|110803463|ref|YP_698994.1| ribosomal biogenesis GTPase [Clostridium perfringens SM101]
gi|182625876|ref|ZP_02953642.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
gi|110683964|gb|ABG87334.1| GTP-binding protein [Clostridium perfringens SM101]
gi|177908910|gb|EDT71402.1| GTP-binding protein [Clostridium perfringens D str. JGS1721]
Length = 281
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R I++ LK+ D VIE+RD+RIP SS +P + + K RVI LNK DL
Sbjct: 3 INWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+P + W + + + +NA + ++ KLL+ +LK + T
Sbjct: 63 TDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + K A G PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKNKQWIKT--KLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 MDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERL 213
>gi|72025788|ref|XP_793548.1| PREDICTED: mitochondrial GTPase 1-like [Strongylocentrotus
purpuratus]
Length = 301
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 21/229 (9%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+WFP HMA + + ++ +K D V+EV D+R+P + +P + K ++ LNKKDLA
Sbjct: 20 HWFPSHMARSMKKMQGSMKKVDCVVEVHDARLPFAGRNPAFRETFGIKPHLLILNKKDLA 79
Query: 86 N---PNILNKWVRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP 134
+ N + K ++ F +C Q + ++ V +++++E + +
Sbjct: 80 DTASSNDIRKRLQEEGGIEHVMFTNCVQQN---SPSAKKIVPTVIDIIEGGERFNRTENQ 136
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRP 193
+MVVG+PNVGKS+LIN++ +I + R K VG LPGVT+ + ++ +P
Sbjct: 137 EYSIMVVGIPNVGKSSLINALRRIHVKR------GKGTKVGRLPGVTRSLMQKILVSEQP 190
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+++ DTPG+ P I ++E G+KLA+ G+++D +VG E IA Y+L LN
Sbjct: 191 RMWLFDTPGITTPFIQNVEVGMKLAMMGTLQDHMVGTELIADYVLFTLN 239
>gi|418005098|ref|ZP_12645097.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW1]
gi|410547876|gb|EKQ22100.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei UW1]
Length = 286
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K +LV+EV D+R P SS +P L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVNLVLEVVDARTPESSRNPMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQAIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|291522200|emb|CBK80493.1| ribosome biogenesis GTP-binding protein YlqF [Coprococcus catus
GD/7]
Length = 285
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM A R ++ +K+ D+VIE+ D+R+PL+S +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKARRMMQEDIKLIDIVIELVDARLPLASKNPDIDDLAKGKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
+A+P W +F + + INA + + ++ + +V KE I R+ +
Sbjct: 62 MADPKYTKLWESYFKAKGFFVLQINARTGAGMKAVTGVVNEACKEKIERDRRRGIKNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS INS A ++ G PGVT+ K+ ++
Sbjct: 122 RAMIVGIPNVGKSTFINSYAGKACTK-----------TGNKPGVTKGKQWIKLNK--NVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYL 237
+LDTPG+L P D G KLA+SGSIKD ++ +A L
Sbjct: 169 LLDTPGILWPKFEDQAVGQKLAISGSIKDDILNITELAMKL 209
>gi|320168383|gb|EFW45282.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 25/231 (10%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
NWFPGHMA R I L+ D VIEV D+R+P+S +P LQ K + LNK DL
Sbjct: 19 NWFPGHMARGMREIARNLQHIDYVIEVHDARVPVSGRNPLLQAL--QKPSTLLLNKMDLG 76
Query: 86 NP--NILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------- 135
+P N + K H + + + + +A R +++ L LV + +++ P
Sbjct: 77 DPAVNKIAKARLHEINPRHNVVLTSATLR--LERALTLV---VDHILANVPAERADKDGE 131
Query: 136 -LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRP 193
+ M+VG+PNVGKS+ IN++ ++ + + RA VGP+PG+T+ + I+ P
Sbjct: 132 GIHAMIVGMPNVGKSSTINALRRL------LTGEGARAKVGPIPGITRAVMQPLHISRDP 185
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
I ++DTPG++ P IP++E GLKLA G+ D VGE IA Y+L LN R
Sbjct: 186 KIMLIDTPGIMAPHIPNVEVGLKLAAVGTFIDHQVGEALIADYILFSLNLR 236
>gi|18310689|ref|NP_562623.1| ribosomal biogenesis GTPase [Clostridium perfringens str. 13]
gi|168216994|ref|ZP_02642619.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|422346378|ref|ZP_16427292.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|422874628|ref|ZP_16921113.1| GTPase YlqF [Clostridium perfringens F262]
gi|18145370|dbj|BAB81413.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|182380861|gb|EDT78340.1| GTP-binding protein [Clostridium perfringens NCTC 8239]
gi|373225923|gb|EHP48250.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
perfringens WAL-14572]
gi|380304269|gb|EIA16558.1| GTPase YlqF [Clostridium perfringens F262]
Length = 281
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R I++ LK+ D VIE+RD+RIP SS +P + + K RVI LNK DL
Sbjct: 3 INWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+P + W + + + +NA + ++ KLL+ +LK + T
Sbjct: 63 TDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + K A G PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKNKQWIKT--KLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 MDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERL 213
>gi|320168412|gb|EFW45311.1| mitochondrial GTPase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 359
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 25/231 (10%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
NWFPGHMA R I L+ D VIEV D+R+P+S +P LQ K + LNK DL
Sbjct: 19 NWFPGHMARGMREIARNLQHIDYVIEVHDARVPVSGRNPLLQAL--QKPSTLLLNKMDLG 76
Query: 86 NP--NILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------- 135
+P N + K H + + + + +A R +++ L LV + +++ P
Sbjct: 77 DPAVNKIAKARLHEINPRHNVVLTSATLR--LERALTLV---VDHILANVPAERADKDGE 131
Query: 136 -LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRP 193
+ M+VG+PNVGKS+ IN++ ++ + + RA VGP+PG+T+ + I+ P
Sbjct: 132 GIHAMIVGMPNVGKSSTINALRRL------LTGEGARAKVGPIPGITRAVMQPLHISRDP 185
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
I ++DTPG++ P IP++E GLKLA G+ D VGE IA Y+L LN R
Sbjct: 186 KIMLIDTPGIMAPHIPNVEVGLKLAAVGTFIDHQVGEALIADYILFSLNLR 236
>gi|295110186|emb|CBL24139.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus obeum
A2-162]
Length = 284
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R ++ LK+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 NVQWYPGHMTKAKRQMQEDLKLIDLIIELVDARVPLSSRNPDIDQLGQNKSRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W F S + +++ + + ++ + +++ KE I R+ +
Sbjct: 62 LADERQNEAWKEFFQSKGFHVVKVDSRNGAGMKTIQNVIQEACKEKIERDRRRGIKNRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV G+PNVGKS IN+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVAGIPNVGKSTFINTFAGKAC-----------AKTGNRPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPL 248
+LDTPG+L P D E G++LA GSIKD ++ E +A L+ L T L
Sbjct: 169 LLDTPGILWPKFEDQEVGIRLAFVGSIKDDILNMEELALKLIDYLKEHYTGL 220
>gi|258511349|ref|YP_003184783.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478075|gb|ACV58394.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 34/251 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + L+ D+V+E+ D+R+P+SS P L K R++ L + DL
Sbjct: 3 IQWFPGHMAKAKRLMAEELRGIDVVVELADARLPVSSRSPVLDELARNKPRLMVLTRVDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS----RSSVQKLLELVELKLKEVISREPTLLV-- 138
A+P+ +WV F I +NA + R + L E VE K+ +R V
Sbjct: 63 ADPHCTEQWVERFQREGVIAIPVNARTGQGLREFRRALDEFVEAKMNRARARGIERAVTR 122
Query: 139 -MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS +N + A+ A G PGVT+ + ++ +
Sbjct: 123 GMICGIPNVGKSTFVNQLAGRAV-----------AKTGDRPGVTRSLQWIRVGR---TEL 168
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR------------- 244
LDTPGVL P + + E GLKLA SG++K+ + + Y+LA L+ R
Sbjct: 169 LDTPGVLAPKLANDEQGLKLAASGAVKEEIFEAYEVCAYVLAYLSGRYPDALAKRYGLRV 228
Query: 245 GTPLHWRHLNN 255
TP+ W +L +
Sbjct: 229 ETPIEWTNLQD 239
>gi|195391248|ref|XP_002054275.1| GJ24357 [Drosophila virilis]
gi|194152361|gb|EDW67795.1| GJ24357 [Drosophila virilis]
Length = 324
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 165/358 (46%), Gaps = 74/358 (20%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
+NWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 VNWFPGHMTKGMRQIQQKLRSVDCIVEIHDARIPLAGRNSQFFETITGNGVKPHILVLNK 79
Query: 82 KDLANPNILNKWVRHFDSCK---QDYIAINAHSRSSVQKLLELVELKLKEVI-------S 131
DL ++ + + ++ + N + + +L+++ L K V +
Sbjct: 80 VDLIGTKQQRGILKQLRTVQPELRNILFTNCKDQRNT-GVLDILPLATKLVAESSRFNRA 138
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIA 190
+ +M++GVPNVGKS++IN + + L +K A VG G+T+ + KI
Sbjct: 139 QSAEHNIMIIGVPNVGKSSIINVLRNVHL------KKRSAARVGAEAGITRAVGERIKIQ 192
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW 250
+P +Y++DTPG+L PS+ D E G+KLAL G + D +VGE+ IA YL L+W
Sbjct: 193 EQPLVYMIDTPGILQPSVTDDEMGMKLALVGCVPDHIVGEDLIADYL----------LYW 242
Query: 251 RHLNNRTEVSQSETENKH-EYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEF 309
NKH Y D P + E Q+A+ + ++
Sbjct: 243 L--------------NKHRRYEYVDKLGLTSGPSDNISAVLAE---YAQQQAMFHRVKQY 285
Query: 310 DGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDD 367
+G VE +L L ++KF++ FRTG+LGP LD+
Sbjct: 286 NGQVEVMTNL-------------------------LAAARKFISFFRTGQLGPINLDE 318
>gi|313888141|ref|ZP_07821815.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845831|gb|EFR33218.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 283
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 122/225 (54%), Gaps = 22/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ +LK+ D VIE+ DSRIP SS +P L K+R++ NK D
Sbjct: 2 NINWYPGHMKKTIEDIEKKLKLVDFVIEIIDSRIPFSSRNPLFDDLLKNKKRLLIFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRS---SVQKLLELVELKLKEV----ISREPTL 136
L++P + + W+ I+ NA + V K EL+ ++K+ +++ P L
Sbjct: 62 LSDPKLNDLWMDRLTDENNFAISYNAMKPNVGLVVNKSEELMAEEIKKFEDKGLNKGP-L 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PN GKS INSI T+ A G PGVT+ KI P ++
Sbjct: 121 RAMIVGIPNSGKSTFINSISG-----------TRSAKTGNRPGVTKVNQWIKI--HPKLH 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D + GL LA +G+IKD ++ E +A L+ L
Sbjct: 168 LLDTPGVLWPKFQD-KVGLNLAFTGAIKDEIMDRETLALRLIEKL 211
>gi|307244391|ref|ZP_07526502.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
gi|306492210|gb|EFM64252.1| ribosome biogenesis GTP-binding protein YlqF [Peptostreptococcus
stomatis DSM 17678]
Length = 294
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 22/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM +++ LK+ D+VIE+ D+RIPLSS +P + + K R++ LNK D
Sbjct: 14 NINWYPGHMKKTRELVQNNLKLVDVVIELLDARIPLSSKNPDIDRLVGDKPRIVLLNKAD 73
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPTL 136
+ ++ WV +F I INA + + V K++ + L E RE +
Sbjct: 74 MCEKPAIDAWVAYFAKEDVKAIPINAMTGTGVNKVISECKAVTRSMMESLAEKGRRERAI 133
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPSI 195
+M+VGVPNVGKS+LIN + +R+T G PGVT+ KI R +
Sbjct: 134 RIMIVGVPNVGKSSLINKLS------------GRRSTQTGDRPGVTKGKQWVKI--RGDM 179
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E L LA + +IKD ++ E + L+ L
Sbjct: 180 ELLDTPGILWPKFEDQEVALNLAFTRAIKDEILDVETLGLRLIERL 225
>gi|357050878|ref|ZP_09112074.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
gi|355380503|gb|EHG27639.1| ribosome biogenesis GTP-binding protein YlqF [Enterococcus
saccharolyticus 30_1]
Length = 289
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK D+V E+ D+R+P+SS +P L L K R+I +NK D
Sbjct: 3 TIQWFPGHMAKAKREVSEKLKFVDIVFELVDARLPVSSRNPMLDQILQQKPRLILINKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P W +F +AINA ++ ++ + L+E I+R+ +
Sbjct: 63 LADPQQTKLWEGYFRKQGFLAMAINAQDSQGIKMIVPKAKEVLQEKIARDKARGLKPRPI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS L+N + K A G PGVT+ + +
Sbjct: 123 RAMVIGIPNVGKSTLMNRLV-----------GKKIAQTGNKPGVTKGQQWLRFGT--ELE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KLAL+G+IKD ++ + IA + L
Sbjct: 170 LLDTPGILWPKFEDPEIGKKLALTGAIKDQLIHLDDIALFGL 211
>gi|319937634|ref|ZP_08012038.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
gi|319807276|gb|EFW03888.1| ribosomal biogenesis GTPase [Coprobacillus sp. 29_1]
Length = 300
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 24/233 (10%)
Query: 17 GFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRV 76
G K G INWFPGHMA A R I R+K+ D+VIE+ DSR P SS +P L ++ K R+
Sbjct: 9 GVNKSG--INWFPGHMAKARREISERMKVIDIVIELVDSRAPYSSKNPMLNDIINQKPRL 66
Query: 77 IALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-- 134
I L KKD+++ +WV +++S +++N + + QK++E LK + +E
Sbjct: 67 IVLTKKDMSDDEKTKQWVHYYESIGYQAMSVNLKNFNEYQKIIEKCRKVLKPKMDKEKAR 126
Query: 135 -----TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV-GPLPGVTQDIAGFK 188
+ MV+G+PNVGKS IN + ++ATV G PGVT+ +
Sbjct: 127 GIKPRAIRAMVLGIPNVGKSTFINKL------------ANRKATVTGNKPGVTKAQQIIR 174
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+A ++ DTPGVL P D +AL GSIK ++ + + Y++ L
Sbjct: 175 VAKDFELF--DTPGVLWPKFEDEHIARNIALLGSIKQDILPLDDLFVYVMTYL 225
>gi|336392851|ref|ZP_08574250.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 285
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ +L + D+V+E+ D+R+PL+S +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT------- 135
DLA+P + W+ +F I+I++ +VQ++ + ++ L + I+R+
Sbjct: 62 DLADPALNAAWINYFKQHGLPAISIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + +G+PNVGKS ++N + K A G PGVT+ K S+
Sbjct: 122 IRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK--SL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KLAL+G+IKDS+ + +A Y LA
Sbjct: 169 ELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALAFF 214
>gi|150390502|ref|YP_001320551.1| HSR1-like GTP-binding protein [Alkaliphilus metalliredigens QYMF]
gi|149950364|gb|ABR48892.1| GTP-binding protein, HSR1-related [Alkaliphilus metalliredigens
QYMF]
Length = 285
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K +LK+ D+V E+ D+RIP+SS +P + + K RVI LNK DL
Sbjct: 5 INWYPGHMKKTKELLKDQLKLVDVVYELLDARIPISSRNPSINEIIGNKPRVIILNKFDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + N+WV++F + + I +N + +++ +E + +E +E +
Sbjct: 65 ADQEVTNRWVKYFKAQGIEAIPVNCLNSKGLKEAIEEGQKMFQEKKDLMIKKGRKERPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VG+PNVGKS++IN + K A G PGVT+ A I + ++ +
Sbjct: 125 IMMVGIPNVGKSSIINQLAG-----------RKSARTGDKPGVTK--AKQWIRLKGNMEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D LKLA +G+IKD ++ E +A L+ L
Sbjct: 172 LDTPGILWPKFEDQNVALKLAFTGAIKDEIMDVEDLAFRLVEKL 215
>gi|420145723|ref|ZP_14653178.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402623|gb|EJN55941.1| Ribosome biogenesis GTPase A [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 285
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ +L + D+V+E+ D+R+PL+S +P L + K R++ LNK
Sbjct: 2 ATIQWFPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT------- 135
DLA+P + W+ +F I+I++ +VQ++ + ++ L + I+R+
Sbjct: 62 DLADPALNAAWINYFKQHGLPAISIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + +G+PNVGKS ++N + K A G PGVT+ K S+
Sbjct: 122 IRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK--SL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KLAL+G+IKDS+ + +A Y LA
Sbjct: 169 ELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALAFF 214
>gi|418634023|ref|ZP_13196421.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|420177366|ref|ZP_14683702.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|420179849|ref|ZP_14686125.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|420189835|ref|ZP_14695794.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|420204167|ref|ZP_14709727.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
gi|374838015|gb|EHS01572.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU129]
gi|394247750|gb|EJD92992.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM057]
gi|394252327|gb|EJD97364.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM053]
gi|394259950|gb|EJE04776.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM037]
gi|394274181|gb|EJE18606.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis NIHLM015]
Length = 287
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMILGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKKHYN 226
>gi|195109126|ref|XP_001999141.1| GI24346 [Drosophila mojavensis]
gi|193915735|gb|EDW14602.1| GI24346 [Drosophila mojavensis]
Length = 321
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 165/364 (45%), Gaps = 86/364 (23%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS---AKRRVIALNK 81
+NWFPGHM R I+ RL+ D ++E+ D+RIP++ + ++ AK ++ LNK
Sbjct: 20 VNWFPGHMTKGMRQIQQRLRNVDCIVEIHDARIPIAGRNSQFFDTITGNGAKPHILVLNK 79
Query: 82 KDL----ANPNILNKW------VRH--FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL IL + ++H F +CK + V +L L + E
Sbjct: 80 IDLLGGKQQRGILKQLRARQPELKHILFTNCKD-------QRNTGVLDILPLATKLVGES 132
Query: 130 I----SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
++ +M++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRAQSADHNIMIIGVPNVGKSSIINVLRNVHL------KKRSAARVGAEAGITRSVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI +P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YL
Sbjct: 187 ERIKIQEQPPVYMIDTPGILQPSITDDEMGMKLALVGCLPDHIVGEDLIADYL------- 239
Query: 245 GTPLHWRHLNNRTEVSQSETENKHE-YNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALH 303
L+W NKHE Y L P + E Q+A+
Sbjct: 240 ---LYWL--------------NKHERYEYVKLLGLHSGPSDNISAVLAE---YAQQQAMF 279
Query: 304 VSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPF 363
+ +++G VE +L L ++KF++ FRTG+LG
Sbjct: 280 HRVKQYNGQVEVMTNL-------------------------LAAARKFISFFRTGQLGAI 314
Query: 364 ILDD 367
LD+
Sbjct: 315 NLDE 318
>gi|421893943|ref|ZP_16324435.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
gi|385273104|emb|CCG89807.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
pentosaceus IE-3]
Length = 287
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +LK+ D+V E+ D+RIP+SS +P ++ + +K ++ L K DL
Sbjct: 4 IQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSS----VQKLLELVELKLKEVISR---EPTLL 137
A+P KW+ ++ S + IA+N+ S+ ++K E++ KL R +
Sbjct: 64 ADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + V +K A G PGVT+ + R +Y+
Sbjct: 124 SMCIGIPNVGKSTLLNHL---------VNKKV--AITGDRPGVTKKQQWLR--SRRGLYL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KLA +G+IKD++ + + Y L +
Sbjct: 171 LDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIF 214
>gi|110799613|ref|YP_696394.1| ribosomal biogenesis GTPase [Clostridium perfringens ATCC 13124]
gi|168210660|ref|ZP_02636285.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|110674260|gb|ABG83247.1| GTP-binding protein [Clostridium perfringens ATCC 13124]
gi|170711301|gb|EDT23483.1| GTP-binding protein [Clostridium perfringens B str. ATCC 3626]
Length = 281
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM R I++ LK+ D VIE+RD+RIP SS +P + + K RVI LNK DL
Sbjct: 3 INWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLELVELKLKEVISREPTLL 137
+P + W + + + +NA + ++ KLL+ +LK + T
Sbjct: 63 TDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKDKHDRLKAKGLAKITTR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + K A G PGVT++ K + I +
Sbjct: 123 AMVVGIPNVGKSTFINKMA-----------KNNIAKTGDRPGVTKNKQWIKT--KLGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+DTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 170 MDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERL 213
>gi|418630372|ref|ZP_13192854.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
gi|374837913|gb|EHS01471.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU128]
Length = 287
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 22/238 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
N L KW +F +A++A ++ K +E+ +K +E RE +
Sbjct: 63 TNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 122 RAMILGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 169 LLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKKHYN 226
>gi|116492735|ref|YP_804470.1| GTP-binding protein YlqF [Pediococcus pentosaceus ATCC 25745]
gi|116102885|gb|ABJ68028.1| Ras superfamily GTP-binding protein YlqF [Pediococcus pentosaceus
ATCC 25745]
Length = 287
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +LK+ D+V E+ D+RIP+SS +P ++ + +K ++ L K DL
Sbjct: 4 IQWYPGHMAKAIRQVEEKLKLVDIVFELVDARIPVSSRNPMIEDVIKSKPHLLILTKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSS----VQKLLELVELKLKEVISR---EPTLL 137
A+P KW+ ++ S + IA+N+ S+ ++K E++ KL R +
Sbjct: 64 ADPKETKKWLDYYKSRNEYAIALNSKEPSTENIILKKTQEILADKLANKADRGIKNAEIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + V +K A G PGVT+ + R +Y+
Sbjct: 124 SMCIGIPNVGKSTLLNHL---------VNKKV--AITGDRPGVTKKQQWLR--SRRGLYL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KLA +G+IKD++ + + Y L +
Sbjct: 171 LDTPGILWPKFEDQNVGNKLAFTGAIKDNLFANDDVVIYGLNIF 214
>gi|421236265|ref|ZP_15692864.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
gi|395603232|gb|EJG63372.1| hypothetical protein AMCSP07_001071 [Streptococcus pneumoniae
2071004]
Length = 283
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + +A+N+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWCQYFESQEIQTLAVNSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|386086556|ref|YP_006002430.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387909787|ref|YP_006340093.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
gi|312278269|gb|ADQ62926.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus ND03]
gi|387574722|gb|AFJ83428.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
thermophilus MN-ZLW-002]
Length = 284
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + E I R + T
Sbjct: 62 DLADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLITDAAKSLMTEKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|227486580|ref|ZP_03916896.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
gi|227235398|gb|EEI85413.1| GTP-binding protein [Anaerococcus lactolyticus ATCC 51172]
Length = 280
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 121/222 (54%), Gaps = 21/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ L++ D+V+E+ D+RIP SS +P L L K R+I +NK D
Sbjct: 4 NINWYPGHMKKTKEDIEKNLRLVDIVLEIIDARIPESSRNPMLDDILKDKPRMIIMNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISRE---PTL 136
LA+ KW++ F S + +N+ R +V K+ E++ K K+ +E P +
Sbjct: 64 LADNKENQKWIKKFKSDGIVALPMNSKERINVGKIYDIAREILADKFKKHEEKEIDNPII 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VGVPN GKS IN++ Q K A VG PGVTQ K ++
Sbjct: 124 RMMIVGVPNSGKSTFINNVAQ-----------RKGARVGNRPGVTQTKQWIKT--NSNLQ 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPGVL P D TGL L+ + +IKD ++ E + Y L
Sbjct: 171 LLDTPGVLWPKFDD-RTGLHLSFTNAIKDEILNIEDLTLYFL 211
>gi|78043127|ref|YP_360259.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77995242|gb|ABB14141.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 276
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +A+ ++K+ D+V+E+RD+RIPLSS +P ++ K R++ NKKDL
Sbjct: 2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61
Query: 85 AN----PNILNK--WVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS----REP 134
A+ IL K W C + A V ++E V + KE S R
Sbjct: 62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGL--KEVWNIIEKVYGQYKEKWSGKGLRPR 119
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
L MVVG+PNVGKS +IN + + + G PGVT+ + K++ +
Sbjct: 120 PLRGMVVGIPNVGKSTVINRLLK------------RSVKTGAKPGVTRGVQWIKLSDK-- 165
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ ++DTPGVL P + D+E GLKL +GSI D V+ +A +LL +L T P
Sbjct: 166 LELMDTPGVLWPKLGDMEVGLKLGATGSISDEVLPVIEVANWLLKILCTYRKP----EFF 221
Query: 255 NRTEVSQSETENK 267
NR ++ SE N+
Sbjct: 222 NRFNLNGSENLNE 234
>gi|198450767|ref|XP_001358117.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
gi|338818379|sp|Q29AU5.2|MTG1_DROPS RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|198131183|gb|EAL27254.2| GA14342 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 164/360 (45%), Gaps = 78/360 (21%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ DSRIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMNKGMRQIQQKLRNVDCIVEIHDSRIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDLANP----NILNKWVRH--------FDSCKQDYIAINAHSRSSVQKL-LELVELKLKE 128
DL P ++L + R F +CK H + L +LV +
Sbjct: 80 VDLLGPKQQRSVLQQLRRQQPELKNILFTNCKDQ----RNHGVLDILPLATQLVGDSSRY 135
Query: 129 VISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-F 187
++ +M++GVPNVGKS++IN + + L +K A VG GVT+ +
Sbjct: 136 NRAQSAEHNIMIIGVPNVGKSSIINVLRNVHL------KKRSAARVGAEAGVTRAVGERI 189
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP 247
KI +P++Y++DTPG+L PS+ D E G+KLAL G + D +VGE+ IA YLL LN
Sbjct: 190 KIQEKPAVYMIDTPGILQPSVTDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLN----- 244
Query: 248 LHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLS 307
++EY ++ L N S V G+ H +
Sbjct: 245 ----------------KHRRYEY-VEKLSLSSGPSDNISAVLAEYAQTHGM---FH-RVK 283
Query: 308 EFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDD 367
++DG VE +L L ++KF+ FRTG+LG LD+
Sbjct: 284 QYDGQVEVMTNL-------------------------LAAARKFIQFFRTGQLGSINLDE 318
>gi|70726671|ref|YP_253585.1| ribosomal biogenesis GTPase [Staphylococcus haemolyticus JCSC1435]
gi|68447395|dbj|BAE04979.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 294
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N N + KW F ++++A +++ + KE RE +
Sbjct: 63 SNLNEMQKWESFFIDKGYYPVSVDAKHGKNLKGVETAAIAATKEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN L+R + A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINK-----LARKNI------AQTGNKPGVTKQQQWIKVGQ--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL---NTRGTPLHWR 251
LDTPG+L P D G KL+L+G+IKDS+V + +A Y L L + G H++
Sbjct: 170 LDTPGILWPKFEDEIVGKKLSLTGAIKDSIVHLDEVAIYGLQFLINHDLEGFKQHYK 226
>gi|417002721|ref|ZP_11942025.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479009|gb|EGC82110.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 22/237 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM I LK+ D+V+E+ D+RIP SS +P L ++ K R+I +NK D
Sbjct: 4 NINWFPGHMKKTKEIIIDNLKLVDIVLEIIDARIPNSSRNPMLDEIIADKPRMIIMNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
L++P+ KW+ F S IA+N+ +V ++ + + L E + P +
Sbjct: 64 LSDPSENKKWIDKFKSQGIPAIAMNSKENVNVDRIYKEAKNLLSEKFKKNEEKNIENPLI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VGVPN GKS IN + K K A VG PG+TQ K +I
Sbjct: 124 RMMIVGVPNSGKSTFINKVS-----------KKKGAKVGNRPGITQSKQWIKTGS--NIQ 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG-EERIAQYLLAVLNTRGTPLHWRH 252
+LDTPGVL P D E GL L+ + +IKD V+ E+ ++L + T+ L R+
Sbjct: 171 LLDTPGVLWPKF-DEEVGLHLSFTNAIKDEVLNIEDLTLKFLEEMKETKPEALKERY 226
>gi|418615525|ref|ZP_13178467.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
gi|374816964|gb|EHR81155.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
epidermidis VCU118]
Length = 287
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 128/239 (53%), Gaps = 22/239 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD
Sbjct: 2 SIQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------T 135
+ N L KW +F +A++A ++ K +E+ +K +E RE
Sbjct: 62 MTNLKELEKWETYFKDEGFYPVAVDAKHGKNL-KNVEVEAIKATQEKFDREKAKGLKPRA 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+
Sbjct: 121 IRAMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+LDTPG+L P D + G KL+L+G+IKDS+V + +A Y L + +H N
Sbjct: 168 QLLDTPGILWPKFEDEKVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKKHYN 226
>gi|291550684|emb|CBL26946.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus torques
L2-14]
Length = 282
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK DL
Sbjct: 3 FQWYPGHMTKARRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKARLILLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A ++W+ +F + +N+ ++ + +++ KE + R+ +
Sbjct: 63 AEDRRNDEWMEYFKKQGYSVVKVNSKKGGGIKSIQSVIQEACKEKMERDRKRGILNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++ +
Sbjct: 123 AMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPG+L P D GL+LA GSIKD ++ E +A L+ LN
Sbjct: 170 LDTPGILWPKFEDQTVGLRLAFIGSIKDEILQTEELASELVKFLN 214
>gi|254556725|ref|YP_003063142.1| GTPase [Lactobacillus plantarum JDM1]
gi|254045652|gb|ACT62445.1| GTPase [Lactobacillus plantarum JDM1]
Length = 284
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTVQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+P WV+H++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADPQATADWVKHYEDQGQVAIAVDSRSRTIGKQMTQAASDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K +++ +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASNK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|377830814|ref|ZP_09813805.1| GTP-binding protein [Lactobacillus mucosae LM1]
gi|377555262|gb|EHT16950.1| GTP-binding protein [Lactobacillus mucosae LM1]
Length = 290
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 21/251 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R I+ ++ + D+V E+ D+R+P SS +P + K R++ L K
Sbjct: 2 ATIQWFPGHMAKALRQIREQMPLVDIVFELVDARVPYSSQNPEVDLAAGDKPRLLILTKT 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W+++F Q +A+++ +RS + + + L E ++ E
Sbjct: 62 DLADPEVTKEWLQYFKDHGQPVLALDSRARSVAKTVTNAAKQVLAEKLANEQAKGMKKRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M VGVPNVGKS L+N H + K A G PGVT + + +
Sbjct: 122 IRAMCVGVPNVGKSTLLN--HLV---------KKNVAATGNRPGVTTGQQWLRSS--AEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT-RGTPLHWRHLN 254
+LDTPGVL + GL LALSG+IKDS+ ++ +A + L L R T L R+
Sbjct: 169 ELLDTPGVLWHKFATEKEGLMLALSGAIKDSLFAKDDVALFALQYLRANRLTELKQRYHL 228
Query: 255 NRTEVSQSETE 265
+V +S T+
Sbjct: 229 TDADVDESVTD 239
>gi|170755310|ref|YP_001781985.1| ribosomal biogenesis GTPase [Clostridium botulinum B1 str. Okra]
gi|429243865|ref|ZP_19207349.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
gi|169120522|gb|ACA44358.1| GTP-binding protein [Clostridium botulinum B1 str. Okra]
gi|428759071|gb|EKX81460.1| GTPase YlqF [Clostridium botulinum CFSAN001628]
Length = 292
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 30/233 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELK--------LKEVIS 131
LA + KW+ +A+N+ + + K L EL++ K L +++
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 122 R-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTRSKQWIK--T 163
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 164 KIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|153940438|ref|YP_001391740.1| ribosomal biogenesis GTPase [Clostridium botulinum F str.
Langeland]
gi|384462748|ref|YP_005675343.1| GTP-binding protein [Clostridium botulinum F str. 230613]
gi|152936334|gb|ABS41832.1| GTP-binding protein [Clostridium botulinum F str. Langeland]
gi|295319765|gb|ADG00143.1| GTP-binding protein [Clostridium botulinum F str. 230613]
Length = 292
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 30/233 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELK--------LKEVIS 131
LA + KW+ +A+N+ + + K L EL++ K L +++
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 122 R-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--T 163
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 164 KIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|168184648|ref|ZP_02619312.1| GTP-binding protein [Clostridium botulinum Bf]
gi|237795878|ref|YP_002863430.1| ribosomal biogenesis GTPase [Clostridium botulinum Ba4 str. 657]
gi|182672284|gb|EDT84245.1| GTP-binding protein [Clostridium botulinum Bf]
gi|229262006|gb|ACQ53039.1| GTP-binding protein [Clostridium botulinum Ba4 str. 657]
Length = 292
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 30/233 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELK--------LKEVIS 131
LA + KW+ +A+N+ + + K L EL++ K L +++
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 122 R-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--T 163
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 164 KIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVK 216
>gi|24379433|ref|NP_721388.1| GTPase YlqF [Streptococcus mutans UA159]
gi|397649667|ref|YP_006490194.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449865443|ref|ZP_21779001.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
gi|449869774|ref|ZP_21780268.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449889171|ref|ZP_21787514.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449892459|ref|ZP_21788463.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449914950|ref|ZP_21795950.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449936859|ref|ZP_21804235.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449941225|ref|ZP_21805455.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449985491|ref|ZP_21819700.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449989503|ref|ZP_21821083.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|450041972|ref|ZP_21837577.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|450077403|ref|ZP_21850403.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|450080998|ref|ZP_21851443.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|450115830|ref|ZP_21864142.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|450121367|ref|ZP_21866266.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|450154162|ref|ZP_21877579.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|24377367|gb|AAN58694.1|AE014939_1 putative GTP-binding protein [Streptococcus mutans UA159]
gi|392603236|gb|AFM81400.1| GTPase YlqF [Streptococcus mutans GS-5]
gi|449152269|gb|EMB55980.1| ribosomal biogenesis GTPase [Streptococcus mutans 11A1]
gi|449157338|gb|EMB60782.1| ribosomal biogenesis GTPase [Streptococcus mutans 15JP3]
gi|449157671|gb|EMB61107.1| ribosomal biogenesis GTPase [Streptococcus mutans 8ID3]
gi|449165184|gb|EMB68207.1| ribosomal biogenesis GTPase [Streptococcus mutans 2ST1]
gi|449179091|gb|EMB81319.1| ribosomal biogenesis GTPase [Streptococcus mutans NFSM2]
gi|449182465|gb|EMB84489.1| ribosomal biogenesis GTPase [Streptococcus mutans NVAB]
gi|449197292|gb|EMB98480.1| ribosomal biogenesis GTPase [Streptococcus mutans T4]
gi|449211208|gb|EMC11622.1| ribosomal biogenesis GTPase [Streptococcus mutans N3209]
gi|449215759|gb|EMC15938.1| ribosomal biogenesis GTPase [Streptococcus mutans N66]
gi|449227644|gb|EMC27056.1| ribosomal biogenesis GTPase [Streptococcus mutans ST1]
gi|449229232|gb|EMC28556.1| ribosomal biogenesis GTPase [Streptococcus mutans ST6]
gi|449238008|gb|EMC36795.1| ribosomal biogenesis GTPase [Streptococcus mutans 21]
gi|449250396|gb|EMC48458.1| ribosomal biogenesis GTPase [Streptococcus mutans SA41]
gi|449256080|gb|EMC53914.1| ribosomal biogenesis GTPase [Streptococcus mutans SF12]
gi|449264294|gb|EMC61640.1| ribosomal biogenesis GTPase [Streptococcus mutans U2B]
Length = 283
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ L
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|418967252|ref|ZP_13518922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
gi|383344786|gb|EID22938.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK616]
Length = 283
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P I +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAITKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|422876383|ref|ZP_16922853.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
gi|332361191|gb|EGJ38995.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1056]
Length = 283
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W R+F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQRYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|336054200|ref|YP_004562487.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
gi|333957577|gb|AEG40385.1| GTP-binding protein [Lactobacillus kefiranofaciens ZW3]
Length = 279
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 24/223 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV DSRIP SS +P ++ + +K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEDKLGLIDVLVEVLDSRIPASSRNPMIEKLVGSKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + KW + + +A+++ +++QKL+ L++ KL+ + PT+
Sbjct: 64 ADPVLTKKWTEKLNQPNKYILALDSLHNTNMQKLIALIKKAAAEKTRKLEARGASNPTIR 123
Query: 138 VMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + G+PN GKS +IN + H + A VG PGVT+ K + +I
Sbjct: 124 IALAGIPNCGKSTIINRLVGHNV-------------AEVGNKPGVTKGQRWLKTSS--NI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDS+ + +A ++L
Sbjct: 169 QVLDTPGILWPKFSDEEVGYKLAALGAIKDSIFHADDVALFVL 211
>gi|256851136|ref|ZP_05556525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 27-2-CHN]
gi|260660560|ref|ZP_05861475.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 115-3-CHN]
gi|256616198|gb|EEU21386.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 27-2-CHN]
gi|260548282|gb|EEX24257.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii 115-3-CHN]
Length = 280
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P + + K +I LNK DL
Sbjct: 3 IQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+PN +NKW S + + ++A +++ L +L++L K+ I + PT+
Sbjct: 63 ADPNEINKWEAKLKSDGKFVLKLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPTIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ +VG+PN GKS +IN + + R A VG PGVT+ + K + S+ +
Sbjct: 123 ICLVGIPNCGKSTIINRL----VGR-------NVAIVGDRPGVTKGQSWLKTSE--SVQI 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G +LA GSIK+SV + +A +++ L
Sbjct: 170 LDTPGILWPKFEDQAVGFRLAALGSIKESVFHADDVALFVMEYL 213
>gi|333979537|ref|YP_004517482.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333823018|gb|AEG15681.1| ribosome biogenesis GTP-binding protein YlqF [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 282
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA A R ++ LK+ D+VIE+ D+RIP SS +P + + K ++ LNK+D
Sbjct: 2 SIQWYPGHMARARRLVQENLKLVDVVIELLDARIPASSRNPLIGKIVGGKPHLVVLNKED 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELKLKEVIS---REPTL 136
LA+P++ W+ F +A+++ R V + + LVE K+ + + R P
Sbjct: 62 LADPHLTRLWLDWFRGRGLPALAVDSTRRKGVAEVPMLVRRLVEDKMASLAARGRRPPNP 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ ++R G PGVT+ ++A +
Sbjct: 122 RCMVVGIPNVGKSFFINALAGSRVTR-----------TGNRPGVTRGQQWVRLAR--EVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYL 237
+LDTPGVL P D GLKLA +G+IK+ V E +A +L
Sbjct: 169 LLDTPGVLWPKFDDPRVGLKLAATGAIKEEVFDVEEVAAWL 209
>gi|223933032|ref|ZP_03625026.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|302023801|ref|ZP_07249012.1| ribosomal biogenesis GTPase [Streptococcus suis 05HAS68]
gi|330832828|ref|YP_004401653.1| GTP1/OBG protein [Streptococcus suis ST3]
gi|223898349|gb|EEF64716.1| GTP1/OBG protein [Streptococcus suis 89/1591]
gi|329307051|gb|AEB81467.1| GTP1/OBG protein [Streptococcus suis ST3]
Length = 283
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P +W +F+ +AIN+ +++V+K+ + + +K+ I R + T
Sbjct: 62 DLADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKDKIERLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|116627721|ref|YP_820340.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMD-9]
gi|116100998|gb|ABJ66144.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 284
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + E I R + T
Sbjct: 62 DLADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTEKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|90961694|ref|YP_535610.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227890782|ref|ZP_04008587.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|301300771|ref|ZP_07206955.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|385840372|ref|YP_005863696.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|90820888|gb|ABD99527.1| GTP-binding protein [Lactobacillus salivarius UCC118]
gi|227867191|gb|EEJ74612.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|300214493|gb|ADJ78909.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|300851621|gb|EFK79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 285
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 132/253 (52%), Gaps = 33/253 (13%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R +K LK D+V+E+ D+R+P SS +P L L K +I L K DL
Sbjct: 4 IQWFPGHMAKALRQVKENLKSVDIVLELVDARLPESSRNPQLAEVLQDKPSIIVLTKMDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP------TLLV 138
A+P +W+ +++S Q IA+N++S + ++ E+ ++ SR+ L
Sbjct: 64 ADPAETKRWINYYESMGQPAIAVNSNSGNLKIIEKKIKEILADKLQSRKEKGIQNQKLRA 123
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
M +G+PNVGKS L+N + K A G PGVT+ K + +L
Sbjct: 124 MCIGIPNVGKSTLLNHL-----------VKKNVAQTGNRPGVTKAQQWLKAGK--DLQLL 170
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN---- 254
DTPG+L P D G KLAL+G+IKD++ ++ +A Y + H+ H N
Sbjct: 171 DTPGILWPKFEDPLVGKKLALTGAIKDTLYAKDDVALYAVE---------HFIHTNPDAL 221
Query: 255 -NRTEVSQSETEN 266
R ++QSE E+
Sbjct: 222 AQRYRLTQSELED 234
>gi|55820933|ref|YP_139375.1| ribosomal biogenesis GTPase [Streptococcus thermophilus LMG 18311]
gi|55822855|ref|YP_141296.1| ribosomal biogenesis GTPase [Streptococcus thermophilus CNRZ1066]
gi|386344588|ref|YP_006040752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|445376173|ref|ZP_21426604.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
gi|445390980|ref|ZP_21428327.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|55736918|gb|AAV60560.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
gi|55738840|gb|AAV62481.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
gi|339278049|emb|CCC19797.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
thermophilus JIM 8232]
gi|444750019|gb|ELW74873.1| GTPase YlqF [Streptococcus thermophilus MTCC 5461]
gi|444750129|gb|ELW74968.1| GTPase YlqF [Streptococcus thermophilus MTCC 5460]
Length = 284
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKILILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + E I R + T
Sbjct: 62 DLADDNRTKEWRTYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTEKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|417924417|ref|ZP_12567859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
gi|342835941|gb|EGU70168.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK569]
Length = 283
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P I +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAITKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|227513335|ref|ZP_03943384.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227524478|ref|ZP_03954527.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227083208|gb|EEI18520.1| GTP-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227088348|gb|EEI23660.1| GTP-binding protein [Lactobacillus hilgardii ATCC 8290]
Length = 290
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + + + D+V EV D+RIP +S +P + K + L KKDL
Sbjct: 5 IQWFPGHMAKAIRQFEENIGLVDIVFEVIDARIPYASQNPEVARITGEKPHLFILTKKDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + +W+ F S Q IA++A ++ ++ +L ++ L E ++RE +
Sbjct: 65 ADPRLTQRWLDSFKSKGQPAIAVDAKTKFNIGNVLSVISPLLSEKLAREEQKGMKKRPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VGVPNVGKS ++N + ++R + A VG PGVT+ K + +
Sbjct: 125 AISVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGVTKGQQWLKAGK--ELEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P ET KLAL+G+IKDSV + IA + L
Sbjct: 172 LDTPGILWPKFESQETANKLALTGAIKDSVFASDDIALFGL 212
>gi|336436401|ref|ZP_08616113.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336007266|gb|EGN37291.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 282
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 20/222 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P L K R+I LNK DLA
Sbjct: 5 WYPGHMTKAKRMMQENMKLIDLVIELVDARVPVSSRNPDLDELGKNKARLILLNKSDLAE 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVM 139
+ + W +F + +NA ++ + +++ KE I R+ + M
Sbjct: 65 ERMNDVWAAYFKEKGYSVVKLNAKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPVRAM 124
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
VVG+PNVGKS IN++ A A G PGVT+ ++ ++ +LD
Sbjct: 125 VVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVELLD 171
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P D GL+LA GSIKD ++ E +A L L
Sbjct: 172 TPGILWPKFEDQTVGLRLAWIGSIKDEILNTEELAAELTGFL 213
>gi|254974803|ref|ZP_05271275.1| putative GTPase [Clostridium difficile QCD-66c26]
gi|255092191|ref|ZP_05321669.1| putative GTPase [Clostridium difficile CIP 107932]
gi|255313930|ref|ZP_05355513.1| putative GTPase [Clostridium difficile QCD-76w55]
gi|255516609|ref|ZP_05384285.1| putative GTPase [Clostridium difficile QCD-97b34]
gi|255649709|ref|ZP_05396611.1| putative GTPase [Clostridium difficile QCD-37x79]
gi|306519822|ref|ZP_07406169.1| putative GTPase [Clostridium difficile QCD-32g58]
gi|384360454|ref|YP_006198306.1| GTPase [Clostridium difficile BI1]
Length = 298
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 16 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + ++E + +E +S +E +
Sbjct: 76 ADRDKLNQWIEYYKKINIKAIPVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKERAIR 135
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 136 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 182
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 183 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKL 226
>gi|297206002|ref|ZP_06923397.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
gi|297149128|gb|EFH29426.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
jensenii JV-V16]
Length = 280
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P + + K +I LNK DL
Sbjct: 3 IQWYPGHMNKARVQLEDKLSLLDVIVEVVDARIPASSRNPLISDIVGDKPHIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+PN +NKW S + + ++A +++ L +L++L K+ I + PT+
Sbjct: 63 ADPNEINKWEAKLKSDGKFVLKLDAQHNTNMAPLFKLIKLAAKDRIDKLEAKGASNPTIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ +VG+PN GKS +IN + + R A VG PGVT+ + K + S+ +
Sbjct: 123 ICLVGIPNCGKSTIINRL----VGR-------NVAIVGDRPGVTKRQSWLKTSE--SVQI 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G +LA GSIK+SV + +A +++ L
Sbjct: 170 LDTPGILWPKFEDQAVGFRLAALGSIKESVFHADDVALFVMEYL 213
>gi|386584145|ref|YP_006080548.1| GTP1/OBG protein [Streptococcus suis D9]
gi|353736291|gb|AER17300.1| GTP1/OBG protein [Streptococcus suis D9]
Length = 283
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +++V+K+ + + +K+ I R + TL
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKSLMKDKIERLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|149013110|ref|ZP_01833956.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|418146365|ref|ZP_12783145.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13637]
gi|419534624|ref|ZP_14074125.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17457]
gi|421217718|ref|ZP_15674618.1| hypothetical protein AMCSP13_001363 [Streptococcus pneumoniae
2070335]
gi|147763055|gb|EDK69998.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|353813573|gb|EHD93801.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13637]
gi|379563972|gb|EHZ28969.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17457]
gi|395584152|gb|EJG44564.1| hypothetical protein AMCSP13_001363 [Streptococcus pneumoniae
2070335]
Length = 283
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMTDKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|335029924|ref|ZP_08523425.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
gi|334267789|gb|EGL86242.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantis SK1076]
Length = 283
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPSLLILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + +W +HF++ +AIN+ + +V+ + + + + + I+R+ TL
Sbjct: 64 ADPTLTKEWRQHFEAQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D LKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|392531088|ref|ZP_10278225.1| ribosomal biogenesis GTPase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083721|ref|YP_006992429.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
gi|412997305|emb|CCO11114.1| ribosome biogenesis GTP-binding protein YlqF [Carnobacterium
maltaromaticum LMA28]
Length = 289
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 121/227 (53%), Gaps = 20/227 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIPLSS +P L + K RVI LNK D
Sbjct: 2 TIQWFPGHMAKARREVSEKLKLVDIVFELVDARIPLSSRNPILDELIGEKPRVIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ WV +F + I A +Q ++ +L LKE R + +
Sbjct: 62 LADERQTKAWVNYFKEQGISAVPIVAQEGKGMQNVMSEAKLLLKEKFDRMRSKGINPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS LIN RF K A G PGVT+ K+ +
Sbjct: 122 RAMSIGIPNVGKSTLIN--------RFI---KRNIAKTGNKPGVTKGQQWLKLGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E G KLAL+G+IKD+++ + IA + L V+ T
Sbjct: 169 LLDTPGILWPKFEDPEIGKKLALTGAIKDTLLQMDDIALFGLDVMRT 215
>gi|333394924|ref|ZP_08476743.1| putative GTP-binding protein [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 285
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHMA A + ++ +L + D+V+E+ D+R+PL+S +P L + K R++ LNK
Sbjct: 2 ATIQWYPGHMAKAKKQVQEKLHLVDIVLEIVDARLPLASRNPILDQIIQQKPRLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT------- 135
DLA+P + W+ +F I+I++ +VQ++ + ++ L + I+R+
Sbjct: 62 DLADPALNAAWINYFKQHDLPAISIDSQHNHNVQQIEKQAQVILADKIARQQARGIKNKP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + +G+PNVGKS ++N + K A G PGVT+ K S+
Sbjct: 122 IRAICIGIPNVGKSTILNRL-----------VKRNVAITGNHPGVTKKQQWLKAGK--SL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KLAL+G+IKDS+ + +A Y LA
Sbjct: 169 ELLDTPGILWPKFEDPLVGKKLALTGAIKDSLYHADDVALYALAFF 214
>gi|307706601|ref|ZP_07643408.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307618056|gb|EFN97216.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 283
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P I +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAITKEWRQYFESKGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQRERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|225572003|ref|ZP_03780867.1| hypothetical protein RUMHYD_00297 [Blautia hydrogenotrophica DSM
10507]
gi|225040536|gb|EEG50782.1| ribosome biogenesis GTP-binding protein YlqF [Blautia
hydrogenotrophica DSM 10507]
Length = 280
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R ++ +K+ DL++E+ D+RIPLSS +P + K R+I LNK D
Sbjct: 2 NVQWYPGHMTKAKRMMQEDIKLIDLIVELVDARIPLSSRNPDIDELGKNKSRLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ ++W +F + INA S + V+ + L+++ KE I R+ +
Sbjct: 62 LADEKGNSQWEAYFKAQGFHVHKINARSGAGVKAINGLIQVACKEKIERDRRRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN+ A ++ G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINTFAGKACTK-----------TGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G++LA+ GSIKD ++ + ++ L+ L
Sbjct: 169 LLDTPGILWPKFEDQEVGVRLAVIGSIKDDILNLDELSLSLIHYL 213
>gi|255281040|ref|ZP_05345595.1| ribosome biogenesis GTP-binding protein YlqF [Bryantella
formatexigens DSM 14469]
gi|255268488|gb|EET61693.1| ribosome biogenesis GTP-binding protein YlqF [Marvinbryantia
formatexigens DSM 14469]
Length = 294
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ D++IE+ D+RIP SS +P + + RV+ LNK D
Sbjct: 2 NYQWYPGHMTKAKRMMQEDIKLIDVIIELVDARIPQSSRNPDIDELGKNRARVLLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W+ HF + +A+++ ++ + L +++ +E I R+ +
Sbjct: 62 LADAAGCEAWIEHFRAKGYYAVALDSRRKNGMNALGRVLQEACREKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV G+PNVGKS IN+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVAGIPNVGKSTFINTYAGRAC-----------AKTGNRPGVTKGKQWIRLNK--NVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D GL+LAL GSI+D ++ E +A L+ L TR
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIRDEILNTEELALELITFLKTR 216
>gi|125624005|ref|YP_001032488.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854353|ref|YP_006356597.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492813|emb|CAL97768.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070775|gb|ADJ60175.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 282
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ + + +W+ +FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSSKVAEWIEYFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|260682865|ref|YP_003214150.1| GTPase [Clostridium difficile CD196]
gi|260686463|ref|YP_003217596.1| GTPase [Clostridium difficile R20291]
gi|260209028|emb|CBA62129.1| putative GTPase [Clostridium difficile CD196]
gi|260212479|emb|CBE03390.1| putative GTPase [Clostridium difficile R20291]
Length = 301
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +K+ LK+ D+VIE+ D+RIP SS +P + + K RV+ LNK D+
Sbjct: 19 INWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDM 78
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + LN+W+ ++ I ++ + ++E + +E +S +E +
Sbjct: 79 ADRDKLNQWIEYYKKINIKAIPVDTIKGVGINNIIEECKNVTREKMSSLKDKGRKERAIR 138
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VGVPNVGKS+LIN + K G PGVT+ ++ + ++ +
Sbjct: 139 IMIVGVPNVGKSSLINKLTG-----------RKSTQTGDKPGVTKGKQWVRL--KGNLEL 185
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E L LA S +IKD ++ E +A L+ L
Sbjct: 186 LDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKL 229
>gi|385838407|ref|YP_005876037.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
gi|358749635|gb|AEU40614.1| 50S ribosomal subunit maturation GTPase RbgA [Lactococcus lactis
subsp. cremoris A76]
Length = 282
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ + + +W+ +FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|168486443|ref|ZP_02710951.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|182684111|ref|YP_001835858.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CGSP14]
gi|303255771|ref|ZP_07341813.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
gi|303260562|ref|ZP_07346528.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|303262696|ref|ZP_07348635.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|303265231|ref|ZP_07351142.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|303266994|ref|ZP_07352868.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|303269264|ref|ZP_07355039.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|387759386|ref|YP_006066364.1| putative GTPase protein [Streptococcus pneumoniae INV200]
gi|418139432|ref|ZP_12776261.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13338]
gi|418180549|ref|ZP_12817119.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41688]
gi|418184953|ref|ZP_12821497.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47283]
gi|418200011|ref|ZP_12836456.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47976]
gi|419509742|ref|ZP_14049386.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae NP141]
gi|419514741|ref|ZP_14054366.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae England14-9]
gi|419523400|ref|ZP_14062979.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13723]
gi|419530405|ref|ZP_14069933.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40028]
gi|421213212|ref|ZP_15670171.1| hypothetical protein AMCSP12_001096 [Streptococcus pneumoniae
2070108]
gi|421215342|ref|ZP_15672268.1| hypothetical protein AMCSP04_001060 [Streptococcus pneumoniae
2070109]
gi|421268450|ref|ZP_15719320.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR95]
gi|421295838|ref|ZP_15746550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58581]
gi|182629445|gb|ACB90393.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
gi|183570532|gb|EDT91060.1| GTP-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|301801975|emb|CBW34703.1| putative GTPase protein [Streptococcus pneumoniae INV200]
gi|302597283|gb|EFL64387.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae BS455]
gi|302636128|gb|EFL66624.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|302638275|gb|EFL68744.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|302641221|gb|EFL71593.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|302643474|gb|EFL73747.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|302645202|gb|EFL75438.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|353845251|gb|EHE25293.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41688]
gi|353849272|gb|EHE29278.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47283]
gi|353865058|gb|EHE44967.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47976]
gi|353905469|gb|EHE80897.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13338]
gi|379557683|gb|EHZ22724.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13723]
gi|379573757|gb|EHZ38707.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40028]
gi|379632935|gb|EHZ97504.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae NP141]
gi|379635290|gb|EHZ99848.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae England14-9]
gi|395580214|gb|EJG40705.1| hypothetical protein AMCSP12_001096 [Streptococcus pneumoniae
2070108]
gi|395580727|gb|EJG41205.1| hypothetical protein AMCSP04_001060 [Streptococcus pneumoniae
2070109]
gi|395869945|gb|EJG81059.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR95]
gi|395897051|gb|EJH08015.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58581]
Length = 283
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|449950694|ref|ZP_21808347.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
gi|449167009|gb|EMB69917.1| ribosomal biogenesis GTPase [Streptococcus mutans 11SSST2]
Length = 283
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+++ +S+V+K+ E + +KL+E ++ TL
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVSSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|148985763|ref|ZP_01818891.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
gi|148989185|ref|ZP_01820575.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
gi|149004284|ref|ZP_01829061.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
gi|237650102|ref|ZP_04524354.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974]
gi|237822304|ref|ZP_04598149.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae CCRI 1974M2]
gi|387757506|ref|YP_006064485.1| putative GTPase protein [Streptococcus pneumoniae OXC141]
gi|405761239|ref|YP_006701835.1| GTPase protein [Streptococcus pneumoniae SPNA45]
gi|418086863|ref|ZP_12724033.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47033]
gi|418143995|ref|ZP_12780795.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13494]
gi|418202401|ref|ZP_12838831.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA52306]
gi|418232200|ref|ZP_12858787.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07228]
gi|418236660|ref|ZP_12863228.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19690]
gi|419455545|ref|ZP_13995503.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP04]
gi|419457544|ref|ZP_13997488.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02254]
gi|419480049|ref|ZP_14019855.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19101]
gi|419499742|ref|ZP_14039437.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47597]
gi|421285252|ref|ZP_15736029.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60190]
gi|421289760|ref|ZP_15740511.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA54354]
gi|421305079|ref|ZP_15755735.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62331]
gi|421307476|ref|ZP_15758119.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60132]
gi|147757778|gb|EDK64792.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP14-BS69]
gi|147922067|gb|EDK73190.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP3-BS71]
gi|147925408|gb|EDK76486.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP6-BS73]
gi|301800095|emb|CBW32696.1| putative GTPase protein [Streptococcus pneumoniae OXC141]
gi|353759124|gb|EHD39710.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47033]
gi|353809736|gb|EHD89996.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13494]
gi|353868204|gb|EHE48094.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA52306]
gi|353886927|gb|EHE66707.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07228]
gi|353892892|gb|EHE72640.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19690]
gi|379531417|gb|EHY96651.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02254]
gi|379570620|gb|EHZ35581.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19101]
gi|379600768|gb|EHZ65548.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47597]
gi|379628679|gb|EHZ93281.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP04]
gi|395887231|gb|EJG98246.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60190]
gi|395889001|gb|EJH00012.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA54354]
gi|395905741|gb|EJH16646.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62331]
gi|395907389|gb|EJH18280.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60132]
gi|404278128|emb|CCM08711.1| putative GTPase protein [Streptococcus pneumoniae SPNA45]
gi|429316132|emb|CCP35797.1| putative GTPase protein [Streptococcus pneumoniae SPN034156]
gi|429319474|emb|CCP32750.1| putative GTPase protein [Streptococcus pneumoniae SPN034183]
gi|429321291|emb|CCP34724.1| putative GTPase protein [Streptococcus pneumoniae SPN994039]
gi|429323111|emb|CCP30765.1| putative GTPase protein [Streptococcus pneumoniae SPN994038]
Length = 283
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQEIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|146318651|ref|YP_001198363.1| ribosomal biogenesis GTPase [Streptococcus suis 05ZYH33]
gi|146320857|ref|YP_001200568.1| ribosomal biogenesis GTPase [Streptococcus suis 98HAH33]
gi|253751770|ref|YP_003024911.1| ribosomal biogenesis GTPase [Streptococcus suis SC84]
gi|253753594|ref|YP_003026735.1| ribosomal biogenesis GTPase [Streptococcus suis P1/7]
gi|253755525|ref|YP_003028665.1| ribosomal biogenesis GTPase [Streptococcus suis BM407]
gi|386577875|ref|YP_006074281.1| GTP-binding protein [Streptococcus suis GZ1]
gi|386579927|ref|YP_006076332.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|386581951|ref|YP_006078355.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|403061512|ref|YP_006649728.1| GTPase YlqF [Streptococcus suis S735]
gi|145689457|gb|ABP89963.1| Predicted GTPase [Streptococcus suis 05ZYH33]
gi|145691663|gb|ABP92168.1| Predicted GTPase [Streptococcus suis 98HAH33]
gi|251816059|emb|CAZ51679.1| putative GTPase protein [Streptococcus suis SC84]
gi|251817989|emb|CAZ55771.1| putative GTPase protein [Streptococcus suis BM407]
gi|251819840|emb|CAR45821.1| putative GTPase protein [Streptococcus suis P1/7]
gi|292558338|gb|ADE31339.1| GTP-binding protein [Streptococcus suis GZ1]
gi|319758119|gb|ADV70061.1| ribosomal biogenesis GTPase [Streptococcus suis JS14]
gi|353734097|gb|AER15107.1| ribosomal biogenesis GTPase [Streptococcus suis SS12]
gi|402808838|gb|AFR00330.1| GTPase YlqF [Streptococcus suis S735]
Length = 283
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +F+ +AIN+ +++V+K+ + + +K+ I R + TL
Sbjct: 64 ADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAKGLMKDKIERLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D E GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQEVGLKLALTGAIKDQLL 201
>gi|386319473|ref|YP_006015636.1| GTP-binding protein [Staphylococcus pseudintermedius ED99]
gi|323464644|gb|ADX76797.1| GTP-binding protein, putative [Staphylococcus pseudintermedius
ED99]
Length = 290
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ NKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPFSSRNPMIDEVIQQKPRVVIFNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N + KW F +A++A ++ + E +E RE +
Sbjct: 63 TNLKEMEKWYAFFREKGAYPVAVDAKHGKGLKNVEEAAIEATREKFEREKVKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRSI-----------AQTGNKPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLDEVAIYGLEFL 213
>gi|170759247|ref|YP_001787754.1| ribosomal biogenesis GTPase [Clostridium botulinum A3 str. Loch
Maree]
gi|169406236|gb|ACA54647.1| GTP-binding protein [Clostridium botulinum A3 str. Loch Maree]
Length = 292
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 30/233 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIKDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELK--------LKEVIS 131
LA + KW+ +A+N+ + + K L EL++ K L +++
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
R VMVVG+PNVGKS+ IN + + ++ A VG PGVT+ K
Sbjct: 122 R-----VMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--T 163
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ I ++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 164 KIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQIK 216
>gi|431794549|ref|YP_007221454.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784775|gb|AGA70058.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 303
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 157/323 (48%), Gaps = 39/323 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A R + +L+ D+VIE+ D+R+P SS +P LQ L K +++ LNK D
Sbjct: 2 SIQWFPGHMTKAKRLLLDQLRWVDVVIELGDARLPESSRNPLLQEMLGDKPKIVILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+P W++ +A++A + + V K++ +E + + I R +
Sbjct: 62 LADPIQTELWIKELRKVSP-VLAVSAATGAGVGKIVPTLERLMADKIEKWAAKGIRARAI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PN GKS+L+N++ A +A G PGVT+ +I + +
Sbjct: 121 RVMVVGIPNCGKSSLVNNLIGSA-----------KAKTGNKPGVTRGNQWIRIHDK--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
++DTPG+L P D E G+KL +G+I+D V+ E ++ +LLA L +
Sbjct: 168 LMDTPGLLWPKFEDTEVGIKLGAAGAIRDEVLNLEELSIWLLAWLK-----------QSY 216
Query: 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDV-------TYIEDLVTGVQRALHVSLSEF 309
+ Q TEN + +L+ + KR V +I + G + E
Sbjct: 217 PDSLQRYTENVQDLDLEGIGRKRGCLVKGGQVDIFKAAQIFIREFRAGSLGRFTLDRIEE 276
Query: 310 DGNVEDENDLESLIEQQFEVLQR 332
E++N ES I + ++R
Sbjct: 277 KSRKEEDNSFESDITNEHSGIER 299
>gi|366085997|ref|ZP_09452482.1| GTP-binding protein [Lactobacillus zeae KCTC 3804]
Length = 286
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A + ++ ++K DL++EV D+R P SS +P L + K R++ LNK+D
Sbjct: 3 TIQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDEIIGEKPRMMILNKQD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +WV+++ IA +A +Q++ +L + E I+R+ P +
Sbjct: 63 LADPALTREWVQYYQDQGFAAIATDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPMI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 123 KAMCIGIPNVGKSTVLNRLVHRNI-----------AVTGNKPGVTKNQQWLKASD--NFQ 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 170 LLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLTYF 214
>gi|414074437|ref|YP_006999654.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974357|gb|AFW91821.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 282
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R+IALNK DL
Sbjct: 3 IQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIIALNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+ + + +W+ +FD +AIN+ + ++L + + + ++ + TL
Sbjct: 63 ADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A G PGVT+ I + +
Sbjct: 123 TMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKELEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 170 LDTPGILWPKFEDQLVGLKLALTGAIKDDLL 200
>gi|417676893|ref|ZP_12326303.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|418155144|ref|ZP_12791875.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|418225544|ref|ZP_12852173.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
gi|332075089|gb|EGI85560.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17545]
gi|353823436|gb|EHE03611.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16242]
gi|353882852|gb|EHE62663.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP112]
Length = 283
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V+ + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVMILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|325262273|ref|ZP_08129010.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
gi|324032105|gb|EGB93383.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. D5]
Length = 283
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+RIP+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPEIDDLGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEDKWNDAWAEYFKGKGYSVVKVNSKKGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A ++ G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKACTK-----------TGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSIKD ++ E +A L+ L
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNSEELAMELIGFL 213
>gi|333371168|ref|ZP_08463130.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
gi|332976612|gb|EGK13453.1| ribosome biogenesis GTP-binding protein YlqF [Desmospora sp. 8437]
Length = 296
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ +L DLV E+ D+R+PLSS +P + + K R+I L K D
Sbjct: 2 TIQWFPGHMAKARRQVEEKLNQVDLVFELLDARLPLSSRNPMIGDLIREKPRLILLTKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL----LELVELKLKEVIS---REPTL 136
LA+ W F S K ++ S + +Q++ ELV+ KL R +
Sbjct: 62 LADREATRLWAGFFRSDKVRAQPVDILSGAGIQQIGPISRELVKEKLASQTRKGIRRHRI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVGVPNVGKSALIN + + A G PGVT++ K+ + +
Sbjct: 122 RAMVVGVPNVGKSALINRLAGRST-----------AKTGDRPGVTRNQQWIKLGN--GME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D + GL+LA SG+IK+ V+ E I YLL + R
Sbjct: 169 LLDTPGILWPKFDDPKVGLRLAASGAIKEEVLSVEEIGLYLLNYIAER 216
>gi|306825208|ref|ZP_07458550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432644|gb|EFM35618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 301
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 23/221 (10%)
Query: 18 FTKGG---GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
F++ G I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K
Sbjct: 12 FSRKGKFMATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKP 71
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP 134
+++ LNK DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+
Sbjct: 72 KLLILNKADLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQK 131
Query: 135 -------TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187
TL M++G+PN GKS L+N + K A VG PGVT+
Sbjct: 132 ERGIKIETLRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWL 180
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
K + +LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 181 KTNK--DLEILDTPGILWPKFEDETVALKLALTGAIKDQLL 219
>gi|417940352|ref|ZP_12583640.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
gi|343389233|gb|EGV01818.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK313]
Length = 317
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 23/221 (10%)
Query: 18 FTKGG---GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
F++ G I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K
Sbjct: 28 FSRKGKFMATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKP 87
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP 134
+++ LNK DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+
Sbjct: 88 KLLILNKADLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQK 147
Query: 135 -------TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187
TL M++G+PN GKS L+N + K A VG PGVT+
Sbjct: 148 ERGIQIETLRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWL 196
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
K + +LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 197 KT--NKDLEILDTPGILWPKFEDETVALKLALTGAIKDQLL 235
>gi|187778965|ref|ZP_02995438.1| hypothetical protein CLOSPO_02560 [Clostridium sporogenes ATCC
15579]
gi|187772590|gb|EDU36392.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
sporogenes ATCC 15579]
Length = 299
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPEIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELKLKEVISREPTLLV- 138
LA + KW+ +A+N+ + + K L EL++ K + + ++ +V
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 139 --MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+ IN + + ++ A VG PGVT+ K + I
Sbjct: 122 RAMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--TKMDIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 169 LMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQDK 216
>gi|417915454|ref|ZP_12559065.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
gi|342834020|gb|EGU68296.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. SK95]
Length = 283
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P++ +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPSMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|358060975|ref|ZP_09147663.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
gi|357256550|gb|EHJ06910.1| ribosomal biogenesis GTPase [Staphylococcus simiae CCM 7213]
Length = 294
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+N + KW F +A++A +++++ KE RE +
Sbjct: 63 SNLKEMEKWKDFFVEKGYYPVAVDAKHGKNLKQVEAAAIKATKEKFEREKAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + A G PGVT+ K+ + +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRTI-----------AQTGNKPGVTKQQQWIKVG--KLLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFL 213
>gi|225389109|ref|ZP_03758833.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
gi|225044827|gb|EEG55073.1| hypothetical protein CLOSTASPAR_02855 [Clostridium asparagiforme
DSM 15981]
Length = 290
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 20/220 (9%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
M A RA+K LK+ DLVIE+ D+R+PLSS +P + + K R++ LNK DLA+ +
Sbjct: 1 MTKAKRAMKEDLKLIDLVIELVDARVPLSSRNPDIDDLGAGKARIVLLNKADLADEALNR 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVMVVGVP 144
+W + F + I+A ++ +++++ +V+ KE I R+ + MVVG+P
Sbjct: 61 RWAQWFTERGMHVVKIDARNKGTLKQIQAVVQEACKEKIERDRKRGILNRPIRAMVVGIP 120
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
NVGKS INS A A G PGVT+ ++ ++ +LDTPG+L
Sbjct: 121 NVGKSTFINSFAGKAC-----------AKTGNKPGVTKGNQWIRLNK--TLELLDTPGIL 167
Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
P D + GLKLAL GSI D ++ + +A L+ VLN R
Sbjct: 168 WPKFEDQQVGLKLALIGSINDEILNRDELALELVNVLNRR 207
>gi|253578397|ref|ZP_04855669.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850715|gb|EES78673.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 283
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 4 NVQWYPGHMTKAKRQMQEDIKLIDLIIELVDARVPLSSRNPDIDELGKNKSRLILLNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W +F + + +++ + S ++ + +++ KE I R+ +
Sbjct: 64 LADERQNEAWKTYFQAKGFYVVKVDSRNGSGMKAINNVIQEACKEKIERDRRRGIKNRPI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN+ A A G PGVT+ ++ +
Sbjct: 124 RAMVVGIPNVGKSTFINTFAGRAC-----------AKTGNKPGVTKGKQWIRL--NKGVE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + G++LA GSIKD ++ E +A +L+ L
Sbjct: 171 LLDTPGILWPKFEDQQVGIRLACVGSIKDDILNMEELALWLIDYL 215
>gi|251782422|ref|YP_002996724.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391051|dbj|BAH81510.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 282
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNVGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|424827560|ref|ZP_18252347.1| GTPase YlqF [Clostridium sporogenes PA 3679]
gi|365980000|gb|EHN16041.1| GTPase YlqF [Clostridium sporogenes PA 3679]
Length = 299
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHMA R IK LK+ D +IE+RD+RI SS +P ++ K R+I LNKKD
Sbjct: 2 NINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPEIEDICGNKPRIILLNKKD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK----LLELVELKLKEVISREPTLLV- 138
LA + KW+ +A+N+ + + K L EL++ K + + ++ +V
Sbjct: 62 LAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKPTLNELLKEKHERMKNKGLVKIVD 121
Query: 139 --MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+ IN + + ++ A VG PGVT+ K + I
Sbjct: 122 RAMVVGIPNVGKSSFINKMAKNSI-----------AKVGDRPGVTKSKQWIK--TKMDIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
++DTPGVL P + L LA +G+IKD ++ E +A L+ L +
Sbjct: 169 LMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQDK 216
>gi|304384965|ref|ZP_07367311.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|418069181|ref|ZP_12706461.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
gi|304329159|gb|EFL96379.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici DSM 20284]
gi|357537914|gb|EHJ21937.1| GTP-binding protein YlqF [Pediococcus acidilactici MA18/5M]
Length = 287
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 20/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +LK+ D+V E+ D+RIP+SS +P ++ + K ++ L K DL
Sbjct: 4 IQWYPGHMAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P +W+ +F +A+N+ S+ + +L+ ++ KL+ SR + +
Sbjct: 64 ADPQETQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILADKLENWESRGIKKTEIK 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + V +K A G PGVT+ K R +Y+
Sbjct: 124 SMCIGIPNVGKSTLLNHL---------VNKKV--AITGDRPGVTKKQQWLK--SRQGLYL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPG+L P D G KLA +G+IKD++ + +A + L + + +
Sbjct: 171 LDTPGILWPKFEDQSVGSKLAFTGAIKDNLYANDDVALFGLQIFSEK 217
>gi|450011007|ref|ZP_21828933.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|450023399|ref|ZP_21830596.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
gi|449189790|gb|EMB91418.1| ribosomal biogenesis GTPase [Streptococcus mutans A19]
gi|449193495|gb|EMB94877.1| ribosomal biogenesis GTPase [Streptococcus mutans U138]
Length = 283
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLIKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ L
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P + GLKLA++G+IKD+++ + I +
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIF 209
>gi|116512137|ref|YP_809353.1| ribosomal biogenesis GTPase [Lactococcus lactis subsp. cremoris
SK11]
gi|116107791|gb|ABJ72931.1| Ras superfamily GTP-binding protein YlqF [Lactococcus lactis subsp.
cremoris SK11]
Length = 283
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D VIE+ D+R+P+SS +P L + K R++ALNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPMSSRNPMLGQIIGDKPRIVALNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ + + +W+ +FD +AIN+ + ++L + + + ++ + T
Sbjct: 62 DLADSSKVAEWIEYFDGQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A G PGVT+ I +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKVAVTGNRPGVTKGQQW--IRTNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 ELLDTPGILWPKFEDQLVGLKLALTGAIKDDLL 201
>gi|452991215|emb|CCQ97470.1| Ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 282
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 122/229 (53%), Gaps = 24/229 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM +IK L + D+V EV D+RIP SS +P + L K R+I LNK D
Sbjct: 2 NINWYPGHMKKTKESIKKNLSLVDIVYEVIDARIPFSSQNPEIDGILGRKSRIIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKL---------KEVISREP 134
LA+ KW +F + ++ + ++++++L +L K+ I P
Sbjct: 62 LADMESNKKWQDYFGKKGISSVIVDCINNRGLEEVIKL-SYRLTGERRRHLAKKGIKNRP 120
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ VM+VGVPNVGKS LINS+ K K VG PGVT+ I +
Sbjct: 121 -IRVMIVGVPNVGKSTLINSLS-----------KRKGTKVGNKPGVTR--VNQWIRLKGD 166
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ +LDTPG+L P D E GL LA +G+IKD ++ E +A L+ LN
Sbjct: 167 LELLDTPGILWPKFEDKEVGLNLAFTGAIKDELLDIENLAIKLVERLNA 215
>gi|378727656|gb|EHY54115.1| hypothetical protein HMPREF1120_02291 [Exophiala dermatitidis
NIH/UT8656]
Length = 338
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 26/233 (11%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+++ GH AA +K + DLVIE RD R P+ S +P + L + R+I K+DL
Sbjct: 19 SYYLGHHAAGLAKMKSMVSQIDLVIECRDYRTPIVSRNPLFEANLGERPRLIVYTKQDLG 78
Query: 86 N---------PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
+ I+ KW D+ A + SRS++ ++L+ E S T
Sbjct: 79 SNYTGEDKKREAIVQKW----DAPSTSLFA-DVKSRSAINRVLDFARAHANESTSLFGTR 133
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAH---- 191
L MVVG+PNVGKS+L+N++ ++L K K A G PGVT+ I KI
Sbjct: 134 L-MVVGMPNVGKSSLLNALRNVSLG------KKKAARTGDQPGVTRKIGTSVKIIDGEDG 186
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ +YVLDTPGV VP +PD E+ LKLAL G++KD+++ IA YLL LN R
Sbjct: 187 KEGVYVLDTPGVFVPYVPDAESMLKLALCGNVKDTIIPPTTIADYLLFHLNLR 239
>gi|322376563|ref|ZP_08051056.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
gi|321282370|gb|EFX59377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
M334]
Length = 283
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKITRQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|422878828|ref|ZP_16925294.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|422928676|ref|ZP_16961618.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|422931651|ref|ZP_16964582.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
gi|332366881|gb|EGJ44622.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1059]
gi|339616318|gb|EGQ20970.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 29667]
gi|339619951|gb|EGQ24526.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK340]
Length = 283
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W R+F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQRYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMDEVTIF 209
>gi|77408070|ref|ZP_00784818.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|410594536|ref|YP_006951263.1| ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
gi|421147340|ref|ZP_15607030.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|421532850|ref|ZP_15979194.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|77173335|gb|EAO76456.1| GTP-binding protein [Streptococcus agalactiae COH1]
gi|401686018|gb|EJS82008.1| GTPase YlqF [Streptococcus agalactiae GB00112]
gi|403641862|gb|EJZ02773.1| GTPase YlqF [Streptococcus agalactiae STIR-CD-17]
gi|410518175|gb|AFV72319.1| Ribosome biogenesis GTPase A [Streptococcus agalactiae SA20-06]
Length = 283
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P +W ++S +AIN+ +S+V+K+ ++ ++ KL+E ++ T
Sbjct: 62 DLADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|357014330|ref|ZP_09079329.1| RbgA [Paenibacillus elgii B69]
Length = 294
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+ IE+ D+R+PLSS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMTRARRQIQEKLKLIDMAIELLDARVPLSSRNPMIDEILQNKPRLVLLNKHD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P + +W+ F I I++ + V+++++ + L E I + +
Sbjct: 62 LADPEVTRRWIEFFAEQGLKAIPIDSVGGNPVKEIMQRSKELLSEKIQAQLRKGMNPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINRMA-----------GRKIAATGDKPGVTKGQQWIKVGT--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D GL+LA +G+IK+ ++ E +A + + L
Sbjct: 169 LLDTPGILWPKFEDQSVGLRLAATGAIKEEILHVEEVALFAMRYLT 214
>gi|334880484|emb|CCB81225.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pentosus MP-10]
Length = 284
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTIQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+P WV+++++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADPQATADWVKYYEAQGQVAIAVDSRSRTIGKQMTQAATDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K + + +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASKK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|270290221|ref|ZP_06196446.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
gi|270281002|gb|EFA26835.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
acidilactici 7_4]
Length = 287
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 20/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +LK+ D+V E+ D+RIP+SS +P ++ + K ++ L K DL
Sbjct: 4 IQWYPGHMAKAIRQVEEKLKLVDVVFELVDARIPVSSRNPMIESVIKDKPHLLILTKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P +W+ +F +A+N+ S+ + +L+ ++ KL+ SR + +
Sbjct: 64 ADPQETQRWLEYFRKNGDHAVALNSKEPSTEKIILKHTRAILANKLENWESRGIKKTEIK 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M +G+PNVGKS L+N + V +K A G PGVT+ K R +Y+
Sbjct: 124 SMCIGIPNVGKSTLLNHL---------VNKKV--AITGDRPGVTKKQQWLK--SRQGLYL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPG+L P D G KLA +G+IKD++ + +A + L + + +
Sbjct: 171 LDTPGILWPKFEDQSVGSKLAFTGAIKDNLYANDDVALFGLQIFSEK 217
>gi|76787382|ref|YP_329729.1| ribosomal biogenesis GTPase [Streptococcus agalactiae A909]
gi|77407003|ref|ZP_00784017.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|406709474|ref|YP_006764200.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
gi|417005257|ref|ZP_11943850.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|424049454|ref|ZP_17787005.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|76562439|gb|ABA45023.1| GTP-binding protein [Streptococcus agalactiae A909]
gi|77174389|gb|EAO77244.1| GTP-binding protein [Streptococcus agalactiae H36B]
gi|341577070|gb|EGS27478.1| ribosomal biogenesis GTPase [Streptococcus agalactiae FSL S3-026]
gi|389649125|gb|EIM70610.1| GTPase YlqF [Streptococcus agalactiae ZQ0910]
gi|406650359|gb|AFS45760.1| ribosomal biogenesis GTPase [Streptococcus agalactiae GD201008-001]
Length = 283
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P +W ++S +AIN+ +S+V+K+ ++ ++ KL+E ++ T
Sbjct: 62 DLADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|339448331|ref|ZP_08651887.1| GTPase [Lactobacillus fructivorans KCTC 3543]
Length = 291
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 30/261 (11%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G NI WFPGHMA A R + + + D++ E+ D+RIP SS +P ++ K R+ L K
Sbjct: 2 GSNIQWFPGHMAKAIRQFEENVHVVDIIFELVDARIPYSSVNPEIKRVAGNKPRLFILTK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REP 134
DLA+P + KW+ +F+ I+I++ + +K+ LK + ++
Sbjct: 62 SDLADPKMTQKWLDYFNQTGLSAISIDSKAHGVRKKIEAAARQVLKPRLEKSQAKGIKKD 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
L + VGVPNVGKS L+N + +S+ + A VG PGVT+ + P+
Sbjct: 122 ILKAVCVGVPNVGKSTLLNQL----VSK-------RSAAVGNRPGVTKGQQW--LTSSPT 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ +LDTPG+L P + E KLAL+G+IK+S+ + IA + LH+ N
Sbjct: 169 MELLDTPGILWPKFQNQEIADKLALTGAIKESIYHPDDIALF----------ALHFFRTN 218
Query: 255 NRTEVSQSETENKHEYNLKDL 275
+ E+ + N ++ NL D+
Sbjct: 219 HEDEILKRYHLNANDLNLSDV 239
>gi|323141924|ref|ZP_08076784.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413591|gb|EFY04450.1| ribosome biogenesis GTP-binding protein YlqF [Phascolarctobacterium
succinatutens YIT 12067]
Length = 286
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ ++K+ D+V+E+ D+RIP SS +P LQ L +K +VIALNK D+
Sbjct: 8 IQWFPGHMTKAKRMMESQIKLVDVVVEMLDARIPRSSTNPMLQDILGSKPKVIALNKIDM 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + W+ I+ V++L+ V+L K VI R +
Sbjct: 68 ADKAQTDVWLEKIKHSGLPVCKIDCAPGKGVKQLISAVQLAAKPVIDKWLKKGVRNRPVR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VM+VG+PNVGKS LIN + + ++ +K PGVT+ IA + +
Sbjct: 128 VMIVGIPNVGKSTLINRL--VGKNKVMAADK---------PGVTRGQQWVTIAK--GLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPGVL P D G LA++G+IK+ V E+ + LL +L R P + L N+
Sbjct: 175 LDTPGVLWPKFDDPSVGFALAVTGAIKEDVFDREQAVELLLDLL-IRKYP---QDLQNKY 230
Query: 258 EVSQSETEN 266
VS + ++
Sbjct: 231 AVSLEQGDD 239
>gi|336430713|ref|ZP_08610652.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336016806|gb|EGN46582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 279
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 124/248 (50%), Gaps = 24/248 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A RA++ +K+ DL+IE+ D+RIPLSS +P + K R++ +NK D
Sbjct: 2 NYQWYPGHMTKARRAMQEDIKLIDLIIELVDARIPLSSRNPDIDELGRNKARLVLMNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P W F + INA S ++ + V+ +E I R+ +
Sbjct: 62 LADPACNRAWTAWFQEQGIKSLEINAQSGQGMKAIQGAVQEVCREKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A ++ G PGVT+ ++ +
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKACTK-----------TGNKPGVTKGKQWIRLNK--GLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G+KLA GS+ D ++ + +A L++ L PL L R
Sbjct: 169 LLDTPGILWPKFEDQSVGMKLAFIGSMNDEIIIMDELAVDLISFLQEWYLPL----LKER 224
Query: 257 TEVSQSET 264
++ ET
Sbjct: 225 YGLTGEET 232
>gi|418010847|ref|ZP_12650618.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei Lc-10]
gi|410553426|gb|EKQ27429.1| 50S ribosomal subunit maturation GTPase [Lactobacillus casei Lc-10]
Length = 286
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A + ++ ++K DLV+EV D+R P SS + L ++ K R++ LNK+
Sbjct: 2 AQIQWFPGHMAKARKQVQEKIKQVDLVLEVVDARTPESSRNLMLDELVADKPRIMVLNKQ 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + WV+++ IAI+A +Q++ +L + E I+R+ P
Sbjct: 62 DLADPALTAAWVQYYQDQGFAAIAIDAQHAKRLQQIPQLATKLMAEKIARKKARGIRNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS ++N + + A G PGVT++ K + +
Sbjct: 122 IKAMCIGIPNVGKSTVLNRL-----------VRRNIAVTGNKPGVTKNQQWLKASD--NF 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P G++LA +G+I D+V E+ + Y L
Sbjct: 169 QLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDMVGLYGLTYF 214
>gi|418975316|ref|ZP_13523225.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
gi|383348687|gb|EID26646.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK1074]
Length = 330
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 23/221 (10%)
Query: 18 FTKGG---GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
F++ G I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K
Sbjct: 41 FSRKGKFMATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKP 100
Query: 75 RVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP 134
+++ LNK DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+
Sbjct: 101 KLLILNKADLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQK 160
Query: 135 -------TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187
TL M++G+PN GKS L+N + K A VG PGVT+
Sbjct: 161 ERGIKIETLRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWL 209
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
K + +LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 210 KTNK--DLEILDTPGILWPKFEDETVALKLALTGAIKDQLL 248
>gi|449898038|ref|ZP_21790366.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
gi|449260334|gb|EMC57836.1| ribosomal biogenesis GTPase [Streptococcus mutans R221]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ K D V + D+R+PLSS +P L + K ++I LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENFKFVDFVTILVDARLPLSSQNPMLTKIIGDKPKLIILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ +W F+ +A+N+ +S+V+K+ E + +KL+E ++ L
Sbjct: 64 ADSTCTAEWCNFFEKQGIKALAVNSKEQSAVKKVTEAAKGLMTDKLVKLRERGIQKENLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS L+N + K A VG PGVT+ K ++ +
Sbjct: 124 TMIVGIPNVGKSTLMNRLAG-----------KKIAIVGNKPGVTKGQQWLK--SNKNLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P + GLKLA++G+IKD+++ + I + L
Sbjct: 171 LDTPGILWPKFEEEAVGLKLAMTGAIKDNLLPMDEITIFGL 211
>gi|418166654|ref|ZP_12803310.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
gi|353830250|gb|EHE10380.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17971]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K ++
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKNL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|444383788|ref|ZP_21181969.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
gi|444386338|ref|ZP_21184398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444247922|gb|ELU54447.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8203]
gi|444248349|gb|ELU54859.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS8106]
Length = 289
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 8 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 67
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 68 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 127
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 128 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 174
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 175 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 207
>gi|417849129|ref|ZP_12495055.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
gi|339457126|gb|EGP69706.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK1080]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|307708681|ref|ZP_07645144.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
gi|307615255|gb|EFN94465.1| GTP-binding protein [Streptococcus mitis NCTC 12261]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|375090694|ref|ZP_09737007.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
gi|374565115|gb|EHR36391.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia languida
CCUG 37842]
Length = 285
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 20/218 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R + +LK+ DLVIE+ D+RIP SS +P + +S K ++ LNK+D
Sbjct: 3 QIQWYPGHMAKARREAEEKLKLVDLVIELVDARIPESSRNPMIAEIISQKPSILVLNKQD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+ + W+ ++ Q +AI+A + ++ L + + + + +++ +
Sbjct: 63 LADKQMTQAWLSYYQDQGQVALAIDAQHQKGLKPLQKACQDLMADYFAKQKARGVKPRAI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS LIN RF +A G PGVT+ K+
Sbjct: 123 RLMILGIPNVGKSTLIN--------RF---VGKNQAQTGNKPGVTKAQRWLKLGK--EFE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
+LDTPG+L P D +TG+ LAL+G+IKD ++ + +A
Sbjct: 170 LLDTPGILWPKFEDPQTGIHLALTGAIKDQLIEMQELA 207
>gi|289167906|ref|YP_003446175.1| GTP-binding protein [Streptococcus mitis B6]
gi|288907473|emb|CBJ22310.1| GTP-binding protein [Streptococcus mitis B6]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|444414111|ref|ZP_21210415.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
gi|444283189|gb|ELU88395.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0199]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|419766049|ref|ZP_14292267.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
gi|383354502|gb|EID32064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK579]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQRERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|418976576|ref|ZP_13524444.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
gi|383351328|gb|EID29134.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
SK575]
Length = 283
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|301786663|ref|XP_002928747.1| PREDICTED: mitochondrial GTPase 1-like [Ailuropoda melanoleuca]
Length = 451
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 120/212 (56%), Gaps = 12/212 (5%)
Query: 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH 96
R ++ LK+ D +IEV D+RIPLS +P Q L K V+ LNK DLA+ K ++H
Sbjct: 159 RKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHVLVLNKMDLADLKEQQKIIQH 218
Query: 97 FDSCK-QDYIAINAHSRSSVQKLLE----LVELKLKEVISREPTLLVMVVGVPNVGKSAL 151
+ ++ + N ++++++ LVE + MV+G+PNVGKS+L
Sbjct: 219 LEGKGLKNVVFTNCVRDENIKQVIPMVRGLVESSYRYHRGESLEYCAMVIGIPNVGKSSL 278
Query: 152 INSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPD 210
IN++ + L R K VG PG+T+ + ++ RP +++LDTPGVL P I
Sbjct: 279 INALRRQHLRR------GKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIAS 332
Query: 211 IETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+E GLKLAL G++ D +VGEE +A YLL LN
Sbjct: 333 VEMGLKLALCGTVLDHLVGEETLADYLLYTLN 364
>gi|366053163|ref|ZP_09450885.1| GTP-binding protein YlqF [Lactobacillus suebicus KCTC 3549]
Length = 289
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 28/225 (12%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R I+ ++ + D+V E+ D+R+P SS +P ++ + K V+ + K
Sbjct: 2 ATIQWFPGHMAKALRQIREQMSLVDIVFELVDARLPYSSLNPEIKKAMGDKPHVLIMTKL 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS----------- 131
DLA+ NI N W+ +F IA+++ R K+ +V K +EV+S
Sbjct: 62 DLADNNITNDWINYFTDHGLPVIAVDSRDR----KVASIVTKKAQEVLSDKIAKNEDKGL 117
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191
+ + M VGVPNVGKS L+N + K A G PGVT +++
Sbjct: 118 SKRAIRAMCVGVPNVGKSTLLNHL-----------VKRNVANTGNRPGVTTGQQWLRLS- 165
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
++ +LDTPGVL P E G+KLALSG+IKDS+ ++ +A +
Sbjct: 166 -SNLELLDTPGVLWPKFQTQEIGVKLALSGTIKDSLFPKDDVALF 209
>gi|349574444|ref|ZP_08886394.1| ribosome biogenesis GTP-binding protein YlqF [Neisseria shayeganii
871]
gi|348013990|gb|EGY52884.1| ribosome biogenesis GTP-binding protein YlqF [Neisseria shayeganii
871]
Length = 311
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 141/291 (48%), Gaps = 26/291 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A +AI RLK D+VIE+ D+R+P SS +P L K ++ LNK+DL
Sbjct: 3 IQWFPGHMHKAKKAIAERLKSVDMVIEMLDARMPASSENPLLAQLSRGKPKLKILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQD-YIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
A+P W+ H++ IA++A R + QKL L + E L V++ G+
Sbjct: 63 ADPERTAVWLAHYNGLNDTRAIALDAGDRQAAQKLAAACRAMLPQRGGIEKPLRVLICGI 122
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS LIN + L + K A G PG+T+ +A ++ DTPG+
Sbjct: 123 PNVGKSTLINGM----LGK-------KSAKTGNEPGITKAEQRLFLAD--DFWLYDTPGM 169
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE 263
L P I E G LA G++ + + EE +A LL L PL L R + +
Sbjct: 170 LWPKIIVAEGGYHLAAGGAVGRNALDEEEVALELLDYLRRHYLPL----LQARYQADKDP 225
Query: 264 TENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEF-DGNV 313
+ + + D K+R + T Q+A ++L++F DG +
Sbjct: 226 SSHWDDTAWLDWIAKKRG-------AVLGGGRTNYQKAAEITLTDFRDGQI 269
>gi|419782252|ref|ZP_14308061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|421488624|ref|ZP_15936012.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
gi|383183356|gb|EIC75893.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK610]
gi|400367841|gb|EJP20856.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK304]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|168577175|ref|ZP_02722990.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|419471085|ref|ZP_14010944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|419503941|ref|ZP_14043610.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
gi|183577218|gb|EDT97746.1| GTP-binding protein [Streptococcus pneumoniae MLV-016]
gi|379545801|gb|EHZ10940.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA07914]
gi|379606618|gb|EHZ71365.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47760]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|167630258|ref|YP_001680757.1| GTP-binding protein [Heliobacterium modesticaldum Ice1]
gi|167592998|gb|ABZ84746.1| GTP-binding protein, putative [Heliobacterium modesticaldum Ice1]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + L DL +E+ D+RIPLSS +P + L K R+I LNK D
Sbjct: 3 GIQWFPGHMARAQRQVGEDLAKVDLALELVDARIPLSSRNPDIDRILGEKPRIILLNKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
LA P ++ +F ++I+A S V+ + LVE LK +I R P
Sbjct: 63 LAEPAATRCFIDYFRLQSIPALSIDAVSGEGVRAIAPLVEQTLKPLIQRWRQRGMRPRAF 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS+LIN + R PGVT+ +I + +
Sbjct: 123 RAMVVGIPNVGKSSLINRL-----------AGRHRTVTADRPGVTRGPQWVRIGQK--LE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D G KL+ +G++ D VV + +AQ++L L+
Sbjct: 170 LLDTPGILWPKFEDPLVGFKLSATGAVSDLVVQVQEVAQFILQFLS 215
>gi|410476458|ref|YP_006743217.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|419482192|ref|ZP_14021984.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|421206625|ref|ZP_15663680.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|421229801|ref|ZP_15686469.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|421292077|ref|ZP_15742813.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|421311988|ref|ZP_15762592.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|444388674|ref|ZP_21186651.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444389726|ref|ZP_21187641.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444392456|ref|ZP_21190180.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444395264|ref|ZP_21192810.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444397608|ref|ZP_21195091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444403041|ref|ZP_21200162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444405848|ref|ZP_21202693.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444407230|ref|ZP_21203897.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444417011|ref|ZP_21213075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444419475|ref|ZP_21215335.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
gi|379580328|gb|EHZ45221.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40563]
gi|395575422|gb|EJG35990.1| hypothetical protein AMCSP20_001190 [Streptococcus pneumoniae
2090008]
gi|395595361|gb|EJG55593.1| hypothetical protein AMCSP01_001172 [Streptococcus pneumoniae
2061376]
gi|395893075|gb|EJH04064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56348]
gi|395910729|gb|EJH21599.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58981]
gi|406369403|gb|AFS43093.1| GTP-binding protein [Streptococcus pneumoniae gamPNI0373]
gi|444248554|gb|ELU55059.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS125219]
gi|444256189|gb|ELU62527.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS70012]
gi|444258583|gb|ELU64905.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0002]
gi|444260265|gb|ELU66573.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0006]
gi|444263351|gb|ELU69533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PCS81218]
gi|444265368|gb|ELU71381.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0008]
gi|444270826|gb|ELU76577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0010]
gi|444272140|gb|ELU77876.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0009]
gi|444284668|gb|ELU89789.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0360]
gi|444286762|gb|ELU91723.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0427]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|422882299|ref|ZP_16928755.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK355]
gi|332360460|gb|EGJ38271.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK355]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S + ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|169834320|ref|YP_001694595.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Hungary19A-6]
gi|168996822|gb|ACA37434.1| GTP-binding protein [Streptococcus pneumoniae Hungary19A-6]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|444400229|ref|ZP_21197643.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
gi|444266957|gb|ELU72883.1| ribosome biogenesis GTP-binding protein YlqF, partial
[Streptococcus pneumoniae PNI0007]
Length = 281
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|167756890|ref|ZP_02429017.1| hypothetical protein CLORAM_02439 [Clostridium ramosum DSM 1402]
gi|237734600|ref|ZP_04565081.1| ribosomal biogenesis GTPase [Mollicutes bacterium D7]
gi|365832610|ref|ZP_09374141.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|374625647|ref|ZP_09698063.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
gi|167703065|gb|EDS17644.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium ramosum
DSM 1402]
gi|229382420|gb|EEO32511.1| ribosomal biogenesis GTPase [Coprobacillus sp. D7]
gi|365260189|gb|EHM90154.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
3_3_56FAA]
gi|373915307|gb|EHQ47078.1| ribosome biogenesis GTP-binding protein YlqF [Coprobacillus sp.
8_2_54BFAA]
Length = 288
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 139/297 (46%), Gaps = 33/297 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R I ++K+ D+VIE+ D+R PLSS +P + K R+I + KKDL
Sbjct: 5 IQWFPGHMAKARREISEKMKLIDIVIELVDARAPLSSKNPMFNEICNNKPRLIVMTKKDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ +KW+ +F I +N + + Q ++++ + LKE + RE +
Sbjct: 65 ADSKATSKWIEYFKGKGIYAICVNLKNFNEYQLVIDVCKEILKEKMEREAKRGLKPRAMR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV+G+PNVGKS IN + K K G PGVT+ A I +
Sbjct: 125 AMVLGIPNVGKSTFINRL-----------AKRKATVTGNRPGVTK--AQQIIRVDKDFEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
DTPGVL P D+ +AL GSIK ++ + + Y + L T + N
Sbjct: 172 FDTPGVLWPKFDDLNVARNIALIGSIKQDILPLDELFIYAVNYLETHYANIVCNRYNIII 231
Query: 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSE-FDGNV 313
+++ E ++ D+ R+ P Y R + V ++ FDGN+
Sbjct: 232 DLNTDWVEKAYD----DIAKNRKIKPVRGYTDY--------DRVMEVFFNDIFDGNM 276
>gi|19704538|ref|NP_604100.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714822|gb|AAL95399.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 289
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 29/254 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESKTVGINLAITGAIRDEILPLEDVACSLLRKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETENK 267
R ++ + + ++K
Sbjct: 228 KERYKLLEEDRDDK 241
>gi|422858458|ref|ZP_16905108.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
gi|327460344|gb|EGF06681.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1057]
Length = 283
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGISTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|262039470|ref|ZP_06012774.1| ribosome biogenesis GTP-binding protein YlqF [Leptotrichia
goodfellowii F0264]
gi|261746537|gb|EEY34072.1| ribosome biogenesis GTP-binding protein YlqF [Leptotrichia
goodfellowii F0264]
Length = 292
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 25/231 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I LKI D+VIE+ D+RIPLSS +P + +K++++ LNK D
Sbjct: 2 NINWYPGHMKKTKDLIVENLKIIDVVIEILDARIPLSSKNPDISKLAKSKQKIVVLNKVD 61
Query: 84 LANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREP 134
L + L KW +F + ++A++ ++ +L ++ + K+K+ R+
Sbjct: 62 LVDTKDLKKWEEYFLKNEISDYFVALSVEKGTNFNELRKITDKIYSDKLEKMKKKGLRKT 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ M+VG+PNVGKS IN +A VG PG T+ KI +
Sbjct: 122 EVRAMIVGIPNVGKSKFINKFVN-----------KNKAKVGNTPGFTRGKQWIKINDK-- 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG-EERIAQYL--LAVLN 242
I +LDTPGVL P D LA++GSIKD+V+ EE + ++ L +LN
Sbjct: 169 IELLDTPGVLWPKFEDENIAYNLAITGSIKDNVLPIEEVVMKFFDKLKILN 219
>gi|402839395|ref|ZP_10887885.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
gi|402270297|gb|EJU19564.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium OBRC8]
Length = 285
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I +K+ +LV+E+ D+R P+SS +P + ++ K +++ L KKDL
Sbjct: 7 INWYPGHMKKTREEIIKNIKLVNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV---------ISREPT 135
A+ + K++ ++ +AIN+ ++ + L+ ++E ++KE I ++P
Sbjct: 67 ADEEDMGKFISYYKEKGIKSVAINSTKKTGISPLINILE-QIKEENYQKNKARGIIKKP- 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +M+VG+PNVGKS LIN I K A G PG+T+ KI + I
Sbjct: 125 LRIMIVGIPNVGKSTLINQIIG-----------KKSAKTGNTPGITKSQQWLKI--KGDI 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I D T KLA GSI+D V+ E I + L
Sbjct: 172 ELLDTPGILWPKIEDKITAQKLAFLGSIRDQVIEIEDIYYEFIKFL 217
>gi|385261963|ref|ZP_10040078.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
gi|385191704|gb|EIF39116.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
SK643]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGILIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD ++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLLPMDEVTIF 209
>gi|419779267|ref|ZP_14305143.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
gi|383186295|gb|EIC78765.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK10]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|293365453|ref|ZP_06612162.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307703409|ref|ZP_07640351.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|322375249|ref|ZP_08049762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|419780107|ref|ZP_14305957.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
gi|291315821|gb|EFE56265.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
ATCC 35037]
gi|307622816|gb|EFO01811.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|321279512|gb|EFX56552.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C300]
gi|383185266|gb|EIC77762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK100]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|149006185|ref|ZP_01829897.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194398607|ref|YP_002037767.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae G54]
gi|307127248|ref|YP_003879279.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|417686456|ref|ZP_12335734.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|417698436|ref|ZP_12347608.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|418096244|ref|ZP_12733358.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|418121196|ref|ZP_12758142.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|418131970|ref|ZP_12768845.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|418148561|ref|ZP_12785326.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|418159876|ref|ZP_12796575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|419442580|ref|ZP_13982609.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|419453088|ref|ZP_13993061.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|419466560|ref|ZP_14006443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|419491047|ref|ZP_14030787.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|419506076|ref|ZP_14045737.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|419512513|ref|ZP_14052147.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|419516781|ref|ZP_14056399.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|419521124|ref|ZP_14060719.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|419532246|ref|ZP_14071762.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|421211230|ref|ZP_15668213.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|421227359|ref|ZP_15684064.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|421238652|ref|ZP_15695219.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|421245048|ref|ZP_15701548.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|421283311|ref|ZP_15734098.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
gi|147761962|gb|EDK68924.1| GTP-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|194358274|gb|ACF56722.1| GTP-binding protein [Streptococcus pneumoniae G54]
gi|306484310|gb|ADM91179.1| GTP-binding protein [Streptococcus pneumoniae 670-6B]
gi|332076293|gb|EGI86759.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41301]
gi|332200481|gb|EGJ14553.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41317]
gi|353770156|gb|EHD50671.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16531]
gi|353794023|gb|EHD74382.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44194]
gi|353807636|gb|EHD87905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11304]
gi|353813236|gb|EHD93469.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13856]
gi|353821609|gb|EHE01785.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17227]
gi|379538424|gb|EHZ03604.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05245]
gi|379544683|gb|EHZ09827.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05248]
gi|379552928|gb|EHZ18016.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13224]
gi|379594626|gb|EHZ59436.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47179]
gi|379606030|gb|EHZ70779.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47794]
gi|379607990|gb|EHZ72736.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49194]
gi|379626797|gb|EHZ91413.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP03]
gi|379636983|gb|EIA01541.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA05578]
gi|379640784|gb|EIA05323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02506]
gi|395573188|gb|EJG33779.1| hypothetical protein AMCSP03_001248 [Streptococcus pneumoniae
2070035]
gi|395595527|gb|EJG55758.1| hypothetical protein AMCSP08_001176 [Streptococcus pneumoniae
2072047]
gi|395601915|gb|EJG62060.1| hypothetical protein AMCSP15_001218 [Streptococcus pneumoniae
2071247]
gi|395608890|gb|EJG68981.1| hypothetical protein AMCSP10_001018 [Streptococcus pneumoniae
2081685]
gi|395881274|gb|EJG92323.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04216]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|125718011|ref|YP_001035144.1| ribosomal biogenesis GTPase [Streptococcus sanguinis SK36]
gi|125497928|gb|ABN44594.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S + ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|15901020|ref|NP_345624.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae TIGR4]
gi|111658305|ref|ZP_01408995.1| hypothetical protein SpneT_02000534 [Streptococcus pneumoniae
TIGR4]
gi|148994504|ref|ZP_01823684.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|168483217|ref|ZP_02708169.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|168488984|ref|ZP_02713183.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|168492509|ref|ZP_02716652.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|168493081|ref|ZP_02717224.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|221231869|ref|YP_002511021.1| GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225854631|ref|YP_002736143.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae JJA]
gi|225856833|ref|YP_002738344.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae P1031]
gi|225858943|ref|YP_002740453.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae 70585]
gi|383938074|ref|ZP_09991298.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|387626472|ref|YP_006062647.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|415698636|ref|ZP_11457250.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|415749531|ref|ZP_11477475.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|415752216|ref|ZP_11479327.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|417679121|ref|ZP_12328518.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|417694074|ref|ZP_12343262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|417696351|ref|ZP_12345530.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|418073927|ref|ZP_12711184.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|418078628|ref|ZP_12715851.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|418080600|ref|ZP_12717812.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|418089532|ref|ZP_12726689.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|418091790|ref|ZP_12728932.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|418098507|ref|ZP_12735606.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|418105220|ref|ZP_12742278.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|418107579|ref|ZP_12744617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|418110134|ref|ZP_12747157.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|418112490|ref|ZP_12749492.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|418114707|ref|ZP_12751695.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|418116873|ref|ZP_12753844.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|418123415|ref|ZP_12760348.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|418125795|ref|ZP_12762703.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|418128000|ref|ZP_12764896.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|418130321|ref|ZP_12767205.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|418135202|ref|ZP_12772059.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|418137177|ref|ZP_12774019.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|418162208|ref|ZP_12798894.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|418169180|ref|ZP_12805823.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|418173517|ref|ZP_12810130.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|418175969|ref|ZP_12812564.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|418178176|ref|ZP_12814760.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|418182650|ref|ZP_12819211.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|418187165|ref|ZP_12823693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|418191711|ref|ZP_12828215.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|418193770|ref|ZP_12830262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|418214344|ref|ZP_12841079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|418216589|ref|ZP_12843312.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218899|ref|ZP_12845566.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|418221214|ref|ZP_12847868.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|418229903|ref|ZP_12856507.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|418234359|ref|ZP_12860938.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|418238721|ref|ZP_12865276.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418972904|ref|ZP_13520955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|419422948|ref|ZP_13963163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|419431512|ref|ZP_13971653.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|419434262|ref|ZP_13974379.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|419440240|ref|ZP_13980292.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|419459991|ref|ZP_13999922.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|419462316|ref|ZP_14002223.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|419464642|ref|ZP_14004534.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|419469002|ref|ZP_14008873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|419473203|ref|ZP_14013054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|419477817|ref|ZP_14017642.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|419483974|ref|ZP_14023750.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|419488131|ref|ZP_14027884.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|419493154|ref|ZP_14032881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|419497324|ref|ZP_14037033.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|419508232|ref|ZP_14047885.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|419525897|ref|ZP_14065459.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|421220306|ref|ZP_15677151.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|421222642|ref|ZP_15679429.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|421231901|ref|ZP_15688545.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|421243084|ref|ZP_15699603.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|421247419|ref|ZP_15703905.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|421270518|ref|ZP_15721374.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|421272734|ref|ZP_15723577.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|421278937|ref|ZP_15729745.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|421281121|ref|ZP_15731919.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|421294440|ref|ZP_15745163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|421298596|ref|ZP_15749284.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|421301024|ref|ZP_15751694.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|421309576|ref|ZP_15760203.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444409972|ref|ZP_21206536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444413375|ref|ZP_21209691.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444423525|ref|ZP_21219124.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
gi|14972633|gb|AAK75264.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
gi|147927174|gb|EDK78210.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP9-BS68]
gi|172043516|gb|EDT51562.1| GTP-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|183572498|gb|EDT93026.1| GTP-binding protein [Streptococcus pneumoniae SP195]
gi|183573327|gb|EDT93855.1| GTP-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|183576748|gb|EDT97276.1| GTP-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|220674329|emb|CAR68875.1| putative GTPase protein [Streptococcus pneumoniae ATCC 700669]
gi|225721097|gb|ACO16951.1| GTP-binding protein [Streptococcus pneumoniae 70585]
gi|225723566|gb|ACO19419.1| GTP-binding protein [Streptococcus pneumoniae JJA]
gi|225724745|gb|ACO20597.1| GTP-binding protein [Streptococcus pneumoniae P1031]
gi|301794257|emb|CBW36678.1| putative GTPase protein [Streptococcus pneumoniae INV104]
gi|332073500|gb|EGI83979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17570]
gi|332201626|gb|EGJ15696.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47368]
gi|332203011|gb|EGJ17079.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47901]
gi|353747819|gb|EHD28475.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 4027-06]
gi|353750336|gb|EHD30977.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11184]
gi|353753140|gb|EHD33764.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6735-05]
gi|353762218|gb|EHD42781.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43265]
gi|353763890|gb|EHD44440.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44452]
gi|353769867|gb|EHD50383.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6901-05]
gi|353777285|gb|EHD57758.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44500]
gi|353779762|gb|EHD60226.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41410]
gi|353782337|gb|EHD62771.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49447]
gi|353784356|gb|EHD64777.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41538]
gi|353786220|gb|EHD66633.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5787-06]
gi|353789850|gb|EHD70242.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 6963-05]
gi|353796576|gb|EHD76915.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44511]
gi|353796761|gb|EHD77099.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44378]
gi|353800461|gb|EHD80775.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP170]
gi|353803613|gb|EHD83905.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA07643]
gi|353828251|gb|EHE08394.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17328]
gi|353834365|gb|EHE14466.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19077]
gi|353838334|gb|EHE18412.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41277]
gi|353841793|gb|EHE21846.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41437]
gi|353844950|gb|EHE24993.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA41565]
gi|353850887|gb|EHE30891.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA43380]
gi|353852395|gb|EHE32384.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47360]
gi|353857612|gb|EHE37575.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47388]
gi|353859750|gb|EHE39700.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47439]
gi|353871627|gb|EHE51498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA54644]
gi|353872181|gb|EHE52047.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875554|gb|EHE55406.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP127]
gi|353876137|gb|EHE55987.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47751]
gi|353888325|gb|EHE68100.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae EU-NP01]
gi|353888604|gb|EHE68378.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA08780]
gi|353894471|gb|EHE74213.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353901804|gb|EHE77336.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11663]
gi|353902439|gb|EHE77969.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA11426]
gi|379532095|gb|EHY97326.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02270]
gi|379532147|gb|EHY97377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA02714]
gi|379537676|gb|EHZ02858.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04175]
gi|379547105|gb|EHZ12243.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA06083]
gi|379552710|gb|EHZ17799.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13430]
gi|379558157|gb|EHZ23193.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14373]
gi|379567199|gb|EHZ32186.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA18068]
gi|379575646|gb|EHZ40576.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40183]
gi|379580007|gb|EHZ44903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA40410]
gi|379583485|gb|EHZ48362.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43257]
gi|379587474|gb|EHZ52322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA43264]
gi|379590246|gb|EHZ55084.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44386]
gi|379595192|gb|EHZ60001.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47210]
gi|379600793|gb|EHZ65572.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47522]
gi|379611950|gb|EHZ76672.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA49542]
gi|379630285|gb|EHZ94873.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP05]
gi|381309912|gb|EIC50745.1| hypothetical protein CGSSpSV36_0939 [Streptococcus pneumoniae SV36]
gi|381316847|gb|EIC57589.1| hypothetical protein CGSSp4595_1051 [Streptococcus pneumoniae
459-5]
gi|381317825|gb|EIC58550.1| hypothetical protein CGSSpSV35_1221 [Streptococcus pneumoniae SV35]
gi|383350883|gb|EID28730.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383715045|gb|EID71027.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudopneumoniae SK674]
gi|395587682|gb|EJG48026.1| hypothetical protein AMCSP05_001043 [Streptococcus pneumoniae
2070425]
gi|395587844|gb|EJG48184.1| hypothetical protein AMCSP14_001065 [Streptococcus pneumoniae
2070531]
gi|395595930|gb|EJG56156.1| hypothetical protein AMCSP16_001058 [Streptococcus pneumoniae
2080076]
gi|395608672|gb|EJG68764.1| hypothetical protein AMCSP09_001314 [Streptococcus pneumoniae
2081074]
gi|395614240|gb|EJG74261.1| hypothetical protein AMCSP18_001369 [Streptococcus pneumoniae
2082170]
gi|395868313|gb|EJG79431.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR48]
gi|395875628|gb|EJG86708.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR55]
gi|395880370|gb|EJG91423.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17301]
gi|395882282|gb|EJG93329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA04672]
gi|395894730|gb|EJH05710.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA56113]
gi|395898584|gb|EJH09528.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19998]
gi|395902552|gb|EJH13485.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA60080]
gi|395910997|gb|EJH21866.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA62681]
gi|444273534|gb|ELU79207.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0153]
gi|444278463|gb|ELU83910.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0076]
gi|444286782|gb|ELU91742.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae PNI0446]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|408401652|ref|YP_006859615.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407967880|dbj|BAM61118.1| GTP-binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 295
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 17 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 76
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+P +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 77 ADPTRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLR 136
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 137 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 183
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 184 LDTPGILWPKFEDELVGLKLALTGAIKDQLL 214
>gi|420156939|ref|ZP_14663779.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
gi|394756949|gb|EJF40008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp.
MSTE9]
Length = 289
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+++W+PGHM R I+ LK+ D+ E+ D+R+P+SS +P L + K RVI +NK D
Sbjct: 6 SVHWYPGHMTRTKRQIEKSLKLVDIAAEMIDARVPVSSRNPVLDSLIQNKPRVILMNKSD 65
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS--REPTLL---- 137
LA+ +W+R + S +A+++ S +++ LV L + I+ R ++
Sbjct: 66 LADSAQTERWIRFYQSQGISAVALDSRSGKNLKAFFPLVRDVLSDRIAAWRAKGMVGRPV 125
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVGVPNVGKS+ IN + +A V PGVT++ F +
Sbjct: 126 RVMVVGVPNVGKSSFINKLSH-----------GGKANVEDRPGVTRNNQWFTLGG--GFE 172
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P D G +LA +G++KD VV E +A LL VL
Sbjct: 173 LLDTPGVLWPKFEDPLVGERLAFTGAVKDDVVDTEHLAARLLEVL 217
>gi|417934676|ref|ZP_12577996.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
gi|340771246|gb|EGR93761.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
bv. 2 str. F0392]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD ++ + + +
Sbjct: 169 EILDTPGILWPKFEDDTVALKLALTGAIKDQLLPMDEVTIF 209
>gi|315613172|ref|ZP_07888082.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
gi|315314734|gb|EFU62776.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis ATCC 49296]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|422862517|ref|ZP_16909149.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK408]
gi|327474217|gb|EGF19624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK408]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S + ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQEIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|284047853|ref|YP_003398192.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
gi|283952074|gb|ADB46877.1| ribosome biogenesis GTP-binding protein YlqF [Acidaminococcus
fermentans DSM 20731]
Length = 295
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 24/227 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A R ++ LK+ D+V+E+ D+RIP SSA+P LQ + AK++++ LNK D
Sbjct: 11 HIQWFPGHMTKAKRMMEANLKLVDVVVELLDARIPRSSANPMLQQLIGAKQKIVVLNKTD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSR---------SSVQKLLELVELKLKEVISREP 134
+A+P W+ +F K + A+ + S++QK E K ++ R
Sbjct: 71 MADPERTQAWLSYFK--KNSFTALEVDCQKGKGVKALVSAIQKAGEPTLEKWRKKGVRNR 128
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
++ VM+VG+PNVGKS LIN + + ++ Q K PGVT+ +
Sbjct: 129 SIRVMIVGIPNVGKSTLINRL--LGKNKAAAQNK---------PGVTRGPQWVILGK--G 175
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P + ETG LA++G+I++ V +E L+ L
Sbjct: 176 LELLDTPGVLWPKFDNPETGFCLAVTGAIREEVFDQETAVHILVQRL 222
>gi|229918611|ref|YP_002887257.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
gi|229470040|gb|ACQ71812.1| GTP-binding protein HSR1-related [Exiguobacterium sp. AT1b]
Length = 286
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 19/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + +LK+ D+VIE+ D+R+P SS +P + + K R+I LNK D+
Sbjct: 3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARVPQSSRNPMVDEITAGKPRLIVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA-HSR------SSVQKLLELVELKLKEVISREPTLL 137
A+P + + W+R + + +A++A HS+ + QKL++ +++E +
Sbjct: 63 ADPVVTDAWLRALKREEVEVVAVDAKHSKGLKQLITGAQKLMKEKHDRMREKGRNPGPIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LIN + + A G PGVT+ K+ + +
Sbjct: 123 ALIIGIPNVGKSTLINRLAGRNI-----------AITGDRPGVTKRQQWIKMKG-GEMEL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPG+L P D G +LA +G+IKD ++ + IA Y + L+ R
Sbjct: 171 LDTPGILWPKFEDQLVGYRLAATGAIKDEILNLDDIALYTVRELHAR 217
>gi|56964050|ref|YP_175781.1| GTPase [Bacillus clausii KSM-K16]
gi|56910293|dbj|BAD64820.1| GTPase [Bacillus clausii KSM-K16]
Length = 288
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 20/212 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R IK +LK+ D+VIE+ D+R+P SS +P + K R++ LNK D
Sbjct: 3 TIQWYPGHMAKARREIKEKLKLIDVVIELVDARLPQSSRNPLIDELAQQKPRLMLLNKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK-------LLELVELKLKEVISREPTL 136
LA+P +W F + +AINA + + V+ L + K ++ + L
Sbjct: 63 LADPAETERWRAFFKRTGAEVLAINAQTGAGVKNIAPACKTLASALYQKWEQKGMKPRPL 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + ++A VG PGVT+ K+ +
Sbjct: 123 RAIILGIPNVGKSTLINRLVN-----------KRQAKVGDRPGVTKQQQWIKVKQ--ELE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E GL+LA +G+IKD ++
Sbjct: 170 LLDTPGILWPKFDDQEVGLRLAATGAIKDELL 201
>gi|15903087|ref|NP_358637.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae R6]
gi|116515446|ref|YP_816493.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae D39]
gi|421266169|ref|ZP_15717051.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
gi|15458663|gb|AAK99847.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076022|gb|ABJ53742.1| GTP-binding protein [Streptococcus pneumoniae D39]
gi|183217365|gb|ACC59284.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae]
gi|395867731|gb|EJG78852.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae SPAR27]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|331266373|ref|YP_004326003.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
gi|326683045|emb|CBZ00662.1| GTP-binding protein, ribosomal biogenesis GTPase [Streptococcus
oralis Uo5]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|363892710|ref|ZP_09319870.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
gi|361963144|gb|EHL16230.1| ribosome biogenesis GTP-binding protein YlqF [Eubacteriaceae
bacterium CM2]
Length = 285
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I +K+ +LV+E+ D+R P+SS +P + ++ K +++ L KKDL
Sbjct: 7 INWYPGHMKKTREEIIKNIKLVNLVVEIVDARAPISSKNPDIDSMINGKSKLVVLTKKDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV---------ISREPT 135
A+ + K++ ++ +AIN+ ++ + L+ ++E ++KE I ++P
Sbjct: 67 ADEEDMGKFISYYKEKGIKSVAINSTKKTGISPLINILE-QIKEENYQKNKAKGIIKKP- 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +M+VG+PNVGKS LIN I K A G PG+T+ KI + I
Sbjct: 125 LRIMIVGIPNVGKSTLINQIIG-----------KKSAKTGNTPGITKSQQWLKI--KGDI 171
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I D T KLA GSI+D V+ E I + L
Sbjct: 172 ELLDTPGILWPKIEDKITAQKLAFLGSIRDQVIEIEDIYYEFIKFL 217
>gi|331701418|ref|YP_004398377.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
gi|329128761|gb|AEB73314.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
buchneri NRRL B-30929]
Length = 290
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + L + D+V EV D+RIPL+S +P ++ + K + + K+DL
Sbjct: 5 IQWFPGHMAKAIRQFEENLSLVDVVFEVIDARIPLTSQNPEIRRISADKPHLYIMTKRDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + N W+++F Q IAI+A ++ + ++ ++ L++ + RE +
Sbjct: 65 ADPQLTNAWLQYFAEHNQPAIAIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VGVPNVGKS ++N + ++R + A VG PGVT+ K + + +
Sbjct: 125 AISVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGVTKGQQWLKSTDK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P E KLAL+G+IK+SV + IA + L
Sbjct: 172 LDTPGILWPKFSSQEVADKLALTGAIKESVYASDDIALFGL 212
>gi|379705261|ref|YP_005203720.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374681960|gb|AEZ62249.1| ribosomal biogenesis GTPase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 284
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIIGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W R+F+S +A+N+ +++V+ + E + KL+E ++ T
Sbjct: 62 DLADSNRTKEWRRYFESQGIKTLAVNSKEQATVKLVTEAAKSLMADKLAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLL 201
>gi|89895336|ref|YP_518823.1| hypothetical protein DSY2590 [Desulfitobacterium hafniense Y51]
gi|89334784|dbj|BAE84379.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 276
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 21/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA A R + +L+ D+VIE+ D+R+P SS +P LQ L K ++I LNK D
Sbjct: 2 NIQWFPGHMAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEMLGDKPKIIILNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+P W R +A++A + + V K++ VE + I R ++
Sbjct: 62 LADPYWTEIWTRKLRQA-NPVLAVSATNGAGVGKIVPEVERLMAHKIEKWTAKGIRARSI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+VG+PN GKS+L+N++ A +A G PGVT+ +I R +
Sbjct: 121 RVMIVGIPNCGKSSLVNNLIGSA-----------KAKTGNKPGVTRGNQWIRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KL G+I+D V+ E ++ ++L L
Sbjct: 168 LLDTPGLLWPKFEDPEVGKKLGAVGAIRDEVLNLEELSLWVLEQL 212
>gi|358464945|ref|ZP_09174903.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357066474|gb|EHI76624.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD ++ + + +
Sbjct: 169 EILDTPGILWPKFEDDTIALKLALTGAIKDQLLPMDEVTIF 209
>gi|58337275|ref|YP_193860.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227903861|ref|ZP_04021666.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|58254592|gb|AAV42829.1| GTP binding protein [Lactobacillus acidophilus NCFM]
gi|227868252|gb|EEJ75673.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 284
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ +L + D+++EV D+RIP SS +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKLNLIDVLVEVLDARIPESSRNPMIEELVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+P + KW F + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPILTKKWAEKFSGPDKYVLALDSLHNTNMQKLISLVKKAASDKTKKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + + R A VG PGVT+ K + +I
Sbjct: 122 IRIALAGIPNCGKSTIINRL----VGR-------NVAEVGNKPGVTKGQRWLKTS--ANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
VLDTPG+L P D G KLA G+IKDS+ + +A Y+L L
Sbjct: 169 QVLDTPGILWPKFSDQTVGYKLAAFGAIKDSIFHADDVALYVLERL 214
>gi|255524251|ref|ZP_05391210.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296185373|ref|ZP_06853783.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
gi|255512076|gb|EET88357.1| GTP1/OBG protein [Clostridium carboxidivorans P7]
gi|296050207|gb|EFG89631.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
carboxidivorans P7]
Length = 280
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 20/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHMA R IK LK+ D +IE+RD+RI SS +P + K R+I LNK DL
Sbjct: 3 INWFPGHMAKTRREIKENLKLVDAIIEIRDARIVRSSKNPDIDDLCGNKPRIILLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
+ + +W++ + +N + ++ + +V L+E R+ T
Sbjct: 63 SEDKVTKEWIKTLSKDNIRVLTVNCITGEGLKSIKAVVNELLQEKHERKKAKGIVNITDR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VMVVG+PNVGKS+ IN + + ++ A G PGVT+ K + I +
Sbjct: 123 VMVVGIPNVGKSSFINKVAKSSI-----------AKTGDRPGVTRSRQWIK--TKIGIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+DTPG+L P + ET L LA +G+IKD V+ E +A L+ L +
Sbjct: 170 MDTPGILWPKLESEETQLNLAFTGAIKDEVMDIEELALKLVERLQDK 216
>gi|414158502|ref|ZP_11414796.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
gi|410871047|gb|EKS19004.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
F0441]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIALVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|237744258|ref|ZP_04574739.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|421527044|ref|ZP_15973649.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
gi|229431487|gb|EEO41699.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|402256773|gb|EJU07250.1| GTP-binding protein [Fusobacterium nucleatum ChDC F128]
Length = 289
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 29/254 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVACSLLRKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETENK 267
R ++ + + ++K
Sbjct: 228 KERYKLLEEDRDDK 241
>gi|25011102|ref|NP_735497.1| ribosomal biogenesis GTPase [Streptococcus agalactiae NEM316]
gi|76798265|ref|ZP_00780513.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77410513|ref|ZP_00786874.1| GTP-binding protein [Streptococcus agalactiae CJB111]
gi|77413767|ref|ZP_00789948.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|23095501|emb|CAD46707.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586376|gb|EAO62886.1| GTP-binding protein [Streptococcus agalactiae 18RS21]
gi|77160196|gb|EAO71326.1| GTP-binding protein [Streptococcus agalactiae 515]
gi|77163461|gb|EAO74411.1| GTP-binding protein [Streptococcus agalactiae CJB111]
Length = 283
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P +W ++S +AIN+ +S+V+K+ ++ ++ + + I++ + T
Sbjct: 62 DLADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIAKLRGRGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|387761208|ref|YP_006068185.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
gi|339291975|gb|AEJ53322.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius 57.I]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTDKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|340398716|ref|YP_004727741.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
gi|338742709|emb|CCB93214.1| GTP-binding protein [Streptococcus salivarius CCHSS3]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMTDKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|373115378|ref|ZP_09529552.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670444|gb|EHO35525.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 294
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM R I+ LK+ DLV E+ D+RIP+SS +P + + K R+I LN+ D
Sbjct: 2 NIQWYPGHMTKTRRQIQADLKLVDLVAEIIDARIPISSRNPDIDELVGEKPRLIVLNRAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
A+P + W F + NA V + ++ LKE + + +
Sbjct: 62 QADPAMNRVWTDWFRRQGWAVLETNARDGKGVGQFSTVIRQALKEKLEQWKAKGLVGRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVGVPNVGKS IN + K K A G PGVT+ + +
Sbjct: 122 RAMVVGVPNVGKSTFINQVA-----------KRKSAKAGNRPGVTRGKQWVSVD--AGLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D TG+ LA +G++KD ++ E +A +L+ +L R
Sbjct: 169 LLDTPGILWPKFEDETTGIHLAFTGAVKDEIMDLETLACHLIELLARR 216
>gi|164688557|ref|ZP_02212585.1| hypothetical protein CLOBAR_02202 [Clostridium bartlettii DSM
16795]
gi|164602970|gb|EDQ96435.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
bartlettii DSM 16795]
Length = 299
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 24/213 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM +++ LK+ D+VIE+ D+RIPLSS +P + K RV+ LNK DL
Sbjct: 16 INWYPGHMKKTKEMVQNNLKLVDVVIELLDARIPLSSKNPEIDKLAHNKPRVVVLNKSDL 75
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK---------LKEVISREPT 135
++ LNKW+ ++ S I ++ S V K++E E K LKE +E
Sbjct: 76 SDRAKLNKWISYYQSKGIKAIPVDTLKGSGVNKIVE--ECKNVTKEKMDALKEKGRKERA 133
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ VM+VGVPNVGKS+LIN + K G PGVT+ ++ + ++
Sbjct: 134 IRVMIVGVPNVGKSSLINKLTG-----------RKSTQTGDRPGVTKGKQWVRL--KGNL 180
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + L LA + +IKD ++
Sbjct: 181 ELLDTPGILWPKFEDQKIALNLAFTRAIKDEIL 213
>gi|23098994|ref|NP_692460.1| hypothetical protein OB1539 [Oceanobacillus iheyensis HTE831]
gi|22777222|dbj|BAC13495.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 285
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D VIE+ D+R PLSS +P L+ L+ K ++I L KKDL
Sbjct: 3 IQWFPGHMAKAKREVEEKLKLVDFVIELVDARAPLSSQNPMLKQVLNNKPKLIVLMKKDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPTLL 137
A+ + +WV F+ I +N + + +QK+++ +L KLK +
Sbjct: 63 ADQEVTKRWVDKFNEDGTQAIDVNVNHKGDIQKVIQQAKLLGQDKMEKLKRKGIQPRPAR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + K A G PG+T+ K+ + +
Sbjct: 123 AMIVGIPNVGKSTLINRLAN-----------KKIAKTGDRPGITKQQLWIKV--KKDFEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P + G +LA G+IKD ++
Sbjct: 170 LDTPGILWPKFEEEVVGYRLAAIGTIKDQLL 200
>gi|406577629|ref|ZP_11053229.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406588490|ref|ZP_11063094.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419815963|ref|ZP_14340365.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404459694|gb|EKA06021.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404464439|gb|EKA09979.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404467876|gb|EKA12933.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFIDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD ++ + + +
Sbjct: 169 EILDTPGILWPKFEDDAVALKLALTGAIKDQLLPMDEVTIF 209
>gi|392971848|ref|ZP_10337240.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|403046828|ref|ZP_10902297.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
gi|392509561|emb|CCI60530.1| possible GTP-binding protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|402763524|gb|EJX17617.1| ribosomal biogenesis GTPase [Staphylococcus sp. OJ82]
Length = 286
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 25/238 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEELKKVDVVFELVDARIPYSSRNPMIDEVIQQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK-LKEVISREP-------TL 136
AN L KW +F +AI+A + KL+E +K E +E +
Sbjct: 63 ANLKELVKWENYFKGKGFYPVAIDAKHGKGL-KLVEQAAIKATTEKFEKEKQKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + ++++ G PGVT+ K+ S+
Sbjct: 122 RAMIVGIPNVGKSTLINKLANKSVTK-----------TGNTPGVTKQQQWIKVGK--SLQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL---NTRGTPLHWR 251
+LDTPG+L P D G KL+++G+IKDS+V + +A Y L + + G H++
Sbjct: 169 LLDTPGILWPKFEDQLVGKKLSITGAIKDSIVHLDEVAIYGLEFMKAHDYEGLKEHYK 226
>gi|448821358|ref|YP_007414520.1| Ribosome biogenesis GTPase A [Lactobacillus plantarum ZJ316]
gi|448274855|gb|AGE39374.1| Ribosome biogenesis GTPase A [Lactobacillus plantarum ZJ316]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTVQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+P WV++++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADPQATADWVKYYEDQGQVAIAVDSRSRTIGKQMTQAASDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K +++ +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASNK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|348027363|ref|YP_004767168.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
gi|341823417|emb|CCC74341.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera elsdenii
DSM 20460]
Length = 287
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 20/227 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHMA A R I+ LKI D+VIE+ D+RIP+SS +P ++ + K ++ LNK DL
Sbjct: 3 INWYPGHMAKAKRLIQENLKIIDVVIELVDARIPMSSTNPMIKSLIGDKPSIVVLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P +L++WV H+ + +A+N+ V++L+ LV + K + +
Sbjct: 63 ADPAVLDEWVAHYKQQGRKVLALNSKGGKGVKQLISLVRSLAAPKLARWKARGLKNRAVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS LIN LSR + + PG T+ I + + +
Sbjct: 123 TMILGIPNVGKSTLINK-----LSRRSAAKTADK------PGETKGKQWVHIGDQ--LDL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
LDTPGVL P + + + +LA +G+I D+V E + L+ L+ +
Sbjct: 170 LDTPGVLWPKLENQVSAYRLAATGAISDTVFDMETVLLQLVEQLSAQ 216
>gi|336065753|ref|YP_004560611.1| ribosome biogenesis GTPase A [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334295699|dbj|BAK31570.1| ribosome biogenesis GTPase A [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 277
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 20/210 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
++WFPGHMA A R I+ ++K+ D VIE RD+R P+S+ +P L + K+R+I L KKD
Sbjct: 3 QVHWFPGHMAKAIRLIEEQIKVVDFVIECRDARAPMSTRNPVLSRSIGQKKRLIVLTKKD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KWV +S + ++ + + ++E ++ LKE R+ T
Sbjct: 63 LADPKQSEKWVEKLESEGNVVLLVDVINDPVRKMIIEKTDIVLKEKRERDKRRGIRPRTA 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VGVPNVGKS++IN I K A V PGVTQ + ++ +
Sbjct: 123 RALIVGVPNVGKSSVINKISA-----------RKAAGVENRPGVTQSLKLIRVTQ--DLE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDS 226
++DTPGVL P E G+ A+ GS+KD+
Sbjct: 170 LVDTPGVLWPKFESEEMGIICAVIGSVKDT 199
>gi|380032648|ref|YP_004889639.1| ribosome biogenesis GTP-binding protein [Lactobacillus plantarum
WCFS1]
gi|418275408|ref|ZP_12890731.1| ribosome biogenesis GTP-binding protein [Lactobacillus plantarum
subsp. plantarum NC8]
gi|342241891|emb|CCC79125.1| ribosome biogenesis GTP-binding protein [Lactobacillus plantarum
WCFS1]
gi|376008959|gb|EHS82288.1| ribosome biogenesis GTP-binding protein [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTVQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+P WV++++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADPQATADWVKYYEDQGQVAIAVDSRSRTIGKQMTQAASDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K +++ +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASNK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|228476732|ref|ZP_04061398.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
gi|228251603|gb|EEK10704.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
salivarius SK126]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|342215090|ref|ZP_08707755.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589739|gb|EGS33002.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 780 str. F0422]
Length = 297
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 130/248 (52%), Gaps = 21/248 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ WFPGHMA ATR I K D+VIE+ D+RIP SSA+P ++ + K V+ LNK DL
Sbjct: 9 VQWFPGHMAKATRMITEHKKKVDVVIELLDARIPRSSANPVIRELIGDKPHVVILNKCDL 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
ANP +W+ F + IAI++ + ++L++ VE + +I R T+
Sbjct: 69 ANPKATKEWIEFFKNEGIHAIAIDSKNGKGNKQLVKTVESLAQPIIDRWLKKGIKGRTVR 128
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS LIN + A +R + PG T+ K+ ++ +
Sbjct: 129 TMILGIPNVGKSTLINKLAGSAATRTANK-----------PGHTRGQQWVKVGK--NLEL 175
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG-TPLHWRHLNNR 256
LDTPGVL P D +LA++G+I D V + + + LLA L T LH R+
Sbjct: 176 LDTPGVLWPKFEDQRAAARLAMTGAISDDVYDLDSVIKQLLAYLEEHEPTLLHERYKLTE 235
Query: 257 TEVSQSET 264
E + +T
Sbjct: 236 EERTSVDT 243
>gi|387784251|ref|YP_006070334.1| GTP-binding protein [Streptococcus salivarius JIM8777]
gi|338745133|emb|CCB95499.1| GTP-binding protein [Streptococcus salivarius JIM8777]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+S +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFESQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|300814829|ref|ZP_07095064.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|300511059|gb|EFK38324.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 253
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ + I+D IE+ D+RIP SS++P L + K+++I NK D
Sbjct: 2 NINWYPGHMKKTIEDIERKKLITDFCIEIIDARIPFSSSNPLLNEVIKGKKKLIIFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINA---HSRSSVQKLLELVELKLKEVISR---EPTLL 137
L + N+ +KW+ H+ S + + NA + + ++ +EL+ ++K+ + L
Sbjct: 62 LCDENMTSKWISHYKSKDINVLKYNATKPNVNAVIKASMELMAEEIKKFKDKGINHGALK 121
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PN GKS IN I K A G PG+T+ ++ ++++
Sbjct: 122 AMVVGIPNSGKSTFINGISG-----------RKSAKTGNTPGITKTNQWIRL--NKNLHL 168
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P+ G+ LA +G+IKD ++ E + L+ LN+
Sbjct: 169 LDTPGVLWHKFPE-NVGINLAFTGAIKDEIMDRETLGLKLIERLNS 213
>gi|169335924|ref|ZP_02863117.1| hypothetical protein ANASTE_02359 [Anaerofustis stercorihominis DSM
17244]
gi|169258662|gb|EDS72628.1| ribosome biogenesis GTP-binding protein YlqF [Anaerofustis
stercorihominis DSM 17244]
Length = 275
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 16/219 (7%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHMA ATR IK LK D++I++ D+R + S + ++ K+ + NK D
Sbjct: 2 NIQWYPGHMAKATRLIKEDLKNVDVIIKLLDARAVIRSENKDFNKIINQKKSIKVFNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE-LVELKLKEVISREPTLLVMVVG 142
LA+ N +W+++F +D ++A ++ + ++ L ++K+ +RE + MVVG
Sbjct: 62 LADDNKTAEWIKYFKDNNEDVFFVDALNKKGLNDVVNYLNDIKVNFRANRE--VRAMVVG 119
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKS IN+I + A G PGVT K+ + Y+LDTPG
Sbjct: 120 IPNVGKSMFINAIT-----------RKSNARTGNKPGVTLSKQWIKV--KGEFYLLDTPG 166
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
VL P +IE G+ LA GS+K++++ E +A L+ L
Sbjct: 167 VLPPKFDNIEDGVCLASIGSVKETILDREELALKLIEFL 205
>gi|157151133|ref|YP_001450489.1| ribosomal biogenesis GTPase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075927|gb|ABV10610.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 283
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQESIKFVDFVTVLVDARLPLSSQNPMLTKIVGEKPKLLVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P L +W +F+ +A+N+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRLKEWQTYFEGQGIPTLALNSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|322795649|gb|EFZ18328.1| hypothetical protein SINV_02998 [Solenopsis invicta]
Length = 322
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 25/243 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKD 83
+ WFPGHM R ++ RLK D ++EV D+RIP+S + L+ K + L+KKD
Sbjct: 22 LRWFPGHMTKGLRQMQQRLKNIDCILEVHDARIPISGHYADFSRTLTGLKPHIFVLSKKD 81
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPTL 136
LA+ V + I + + +++ L K ++ + E +
Sbjct: 82 LADTRHTKTIVSTLNREGLSNIIFTNLKDEQCRGMKQILPLAKKLILKSQRYNRTEEESY 141
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSI 195
+MV+GVPNVGKS+LIN + L K VG G+T+ + KI+ P++
Sbjct: 142 SMMVIGVPNVGKSSLINRLRSNHL------HLGKATHVGATAGITRSVLTHIKISEDPAV 195
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
Y++DTPG+L PSI DI G KLAL G ++D +VG +A YL L W + NN
Sbjct: 196 YLIDTPGILAPSIKDIHAGFKLALVGCLQDHIVGSYLLADYL----------LFWLNKNN 245
Query: 256 RTE 258
R E
Sbjct: 246 RFE 248
>gi|270292736|ref|ZP_06198947.1| GTP-binding protein [Streptococcus sp. M143]
gi|270278715|gb|EFA24561.1| GTP-binding protein [Streptococcus sp. M143]
Length = 283
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A +G PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVIGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDDAVALKLALTGAIKDQLL 201
>gi|302874783|ref|YP_003843416.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
gi|307690601|ref|ZP_07633047.1| ribosomal biogenesis GTPase [Clostridium cellulovorans 743B]
gi|302577640|gb|ADL51652.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
cellulovorans 743B]
Length = 285
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INWFPGHM+ R IK LK+ D+VIE+RD+RI SSA+P + K R+I LNK DL
Sbjct: 5 INWFPGHMSKTRREIKENLKLVDVVIEIRDARIIKSSANPDIDEITKGKPRIILLNKSDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
++ +W+ + + + + +N + ++ + ++ LKE R
Sbjct: 65 SDERCTKEWIDNLSNEETKILTVNCLNGQGIRNIKPAIDQLLKEKHDRMKAKGLINIKTK 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN + ++ A G PGVT+ + I + I +
Sbjct: 125 AMVVGIPNVGKSTFINRMAGSSI-----------AKTGDRPGVTK--SKQWIRTKIGIEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D GL LA +G+IKD ++ E +A L+ L
Sbjct: 172 LDTPGVLWPKFEDNRVGLNLAFTGAIKDEIMDVEELALKLIEDL 215
>gi|323341685|ref|ZP_08081918.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464110|gb|EFY09303.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 277
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 20/210 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
++WFPGHMA A R I+ ++K+ D VIE RD+R P+S+ +P L + K+R+I L KKD
Sbjct: 3 QVHWFPGHMAKAIRLIEEQIKVVDFVIECRDARAPMSTRNPVLSRSIGQKKRLIVLTKKD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KWV +S + ++ + + ++E ++ LKE R+ T
Sbjct: 63 LADPKQSEKWVEKLESEGNVVLLVDVINDPVRKMIIEKTDIVLKEKRERDKRRGIRPRTA 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VGVPNVGKS++IN I K A V PGVTQ + ++ +
Sbjct: 123 RALIVGVPNVGKSSVINKISA-----------RKAAGVENRPGVTQSLKLIRVTQ--DLE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDS 226
++DTPGVL P E G+ A+ GS+KD+
Sbjct: 170 LVDTPGVLWPKFESEEMGIICAVIGSVKDT 199
>gi|300767457|ref|ZP_07077369.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180668|ref|YP_003924796.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|300495276|gb|EFK30432.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308046159|gb|ADN98702.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 284
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTVQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+P WV++++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADPQATADWVKYYEDQGQVAIAVDSRSRTIGKQMTQAASDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K +++ +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASNK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|126134247|ref|XP_001383648.1| hypothetical protein PICST_43609 [Scheffersomyces stipitis CBS
6054]
gi|126095797|gb|ABN65619.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 369
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 11/223 (4%)
Query: 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-- 85
F GH A H DLV+EVRDSR PLS+ + L+ K +++ +KKDL+
Sbjct: 19 FKGHHQKALTKFGHLAPQIDLVLEVRDSRAPLSTTNVLFDRVLAQKEKIVLYSKKDLSAL 78
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-LLVMVVGVP 144
++L KW +S + ++ I+ SR QK+++L++ + E+ P L +M++G+P
Sbjct: 79 KSSVLRKW---HESVNEKHLTIDCRSRKDAQKVIDLIKQRYFEMTPPPPLGLRLMIIGMP 135
Query: 145 NVGKSALINSIHQIALSRFPV----QEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLD 199
NVGKS L+N++ ++ LS V ++ K A G PGVT++ + ++ P I V D
Sbjct: 136 NVGKSTLVNTLREVGLSNDSVGAISTKRRKVARTGGQPGVTKNTSEIIRLCREPDILVHD 195
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPGV +P++ DIET L L + G + S + A YLL +LN
Sbjct: 196 TPGVFLPTVKDIETMLALGMVGCVHTSFIDPVIQADYLLYLLN 238
>gi|153854844|ref|ZP_01996067.1| hypothetical protein DORLON_02072 [Dorea longicatena DSM 13814]
gi|149752546|gb|EDM62477.1| ribosome biogenesis GTP-binding protein YlqF [Dorea longicatena DSM
13814]
Length = 282
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 20/223 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P + K R+I LNK DLA
Sbjct: 5 WYPGHMTKAKRMMQENIKLIDLVIELVDARVPISSRNPDIDELGKNKARLILLNKSDLAE 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVM 139
+ W +F + +N+ ++ + +++ KE I R+ + M
Sbjct: 65 DKWNDAWSEYFREKGFSVVKVNSKKGGGIKSINGVIQEACKEKIERDRKRGILNRPVRAM 124
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
VVG+PNVGKS IN++ A A G PGVT+ ++ ++ +LD
Sbjct: 125 VVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVELLD 171
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPG+L P D GLKLA GSIKD ++ E +A L+ +N
Sbjct: 172 TPGILWPRFEDQAVGLKLAFIGSIKDEILQTEELAAELVKFMN 214
>gi|400290291|ref|ZP_10792318.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921082|gb|EJN93899.1| ribosomal biogenesis GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 283
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+P SS +P L + K R++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPFSSQNPMLTKIVGDKPRLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+ + +W +F+S +AIN+ +S+V+K+ E + KL+E ++ TL
Sbjct: 64 ADGSRTKEWQDYFESQGITALAINSKEQSAVKKIGEAAKKLMASKLSKLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLAG-----------KKVAAVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD+++
Sbjct: 171 LDTPGILWPKFEDETVGLKLALTGAIKDNLL 201
>gi|307709298|ref|ZP_07645756.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307619881|gb|EFN98999.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 283
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMANKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|332653030|ref|ZP_08418775.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
gi|332518176|gb|EGJ47779.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcaceae
bacterium D16]
Length = 292
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM R I+ LK D+V+E+ D+RIP+SS +P + + K R++ LN+ D
Sbjct: 2 NIQWYPGHMTKTRRQIEADLKNVDIVVEIIDARIPISSRNPDIDAICAGKPRLVILNRAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR--EPTLL---- 137
A+P W F + +A + V + +V+ LK+ I+R E L+
Sbjct: 62 QADPAQNKAWGEWFRKRGCSVLETDAKTGKGVGQFSAVVQNVLKDQIARWQERGLVGRPV 121
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VGVPNVGKS IN + K K A G PGVT+ + +
Sbjct: 122 RAMIVGVPNVGKSTFINKVA-----------KRKTAKAGDRPGVTRGKQWVTVDR--GLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D E GL+LA +G++KD ++ E + +L+ L T
Sbjct: 169 LLDTPGILWPKFEDEEIGLRLAFTGAVKDEIMDVETLGCHLMTFLAT 215
>gi|339624739|ref|ZP_08660528.1| GTP-binding protein YlqF [Fructobacillus fructosus KCTC 3544]
Length = 281
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 137/261 (52%), Gaps = 30/261 (11%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G NI W+PGHMA A R ++ L + D+V E+ D+R+PLSS +P + + K R++ L K
Sbjct: 2 GQNIQWYPGHMAKAFRLMRENLSLVDIVFELVDARLPLSSRNPEVDKLIEKKPRLLVLTK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT------ 135
DLA+P + W +F+ + ++ + Q + + + LKE ++ +
Sbjct: 62 ADLADPKETSAWKAYFERQGLAVVVLDTRGPKTAQVMTKAAKQVLKEQLAAQEAKGIKNR 121
Query: 136 -LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ VM+ G+PNVGKS L+N + VQ+ A PGVT+ +A K A
Sbjct: 122 PIRVMLAGIPNVGKSTLLNHL---------VQKNV--AITANKPGVTKKVAWLKTA--TG 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ +LD+PGVL P D + G +LAL+G++KD++ ++ A +LA ++R+ N
Sbjct: 169 LEILDSPGVLWPKFEDQKIGQRLALTGAVKDTIFAKDDAALSMLA---------YFRNYN 219
Query: 255 NRTEVSQSETENKHEYNLKDL 275
+ + + N ++L D+
Sbjct: 220 QQAIIDRYHL-NADAFDLSDV 239
>gi|19746107|ref|NP_607243.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS8232]
gi|94994427|ref|YP_602525.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10750]
gi|19748281|gb|AAL97742.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|94547935|gb|ABF37981.1| GTP-binding protein [Streptococcus pyogenes MGAS10750]
Length = 282
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|22537173|ref|NP_688024.1| ribosomal biogenesis GTPase [Streptococcus agalactiae 2603V/R]
gi|22534037|gb|AAM99896.1|AE014238_9 GTP-binding protein [Streptococcus agalactiae 2603V/R]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPT 135
DLA+P +W ++S +AIN+ +S+V+K+ ++ ++ + + I+ ++ T
Sbjct: 62 DLADPIRTKEWRDFYESQGLKTLAINSKEQSTVKKVTDIAKILMSDKIANLRGRGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|325661110|ref|ZP_08149737.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325472617|gb|EGC75828.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+RIP+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEEKQNDAWAEYFKEKGFSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D GL+LA GSIKD ++ E +A ++ L +
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAMEMITFLTEK 216
>gi|329121229|ref|ZP_08249856.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
gi|327470163|gb|EGF15626.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
micraerophilus DSM 19965]
Length = 286
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA R I LK D+ +E+ D+RIP+SSA+P ++ + K R+I LNK DL
Sbjct: 3 IQWFPGHMAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENLVQNKPRIIVLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ I KW+ +F D I ++ ++ +KL+ L+ K K V+ + ++
Sbjct: 63 ADVKITEKWIEYFKKENIDVIPVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M++G+PNVGKS LIN + +K PG T+ +++ + +
Sbjct: 123 IMILGIPNVGKSTLINFLSG-----------SKATRTANTPGHTKGKQWVRLSS--GLDL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D LKLA +G+I + + LLA L
Sbjct: 170 LDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSYEVVTTLLAAL 213
>gi|313892603|ref|ZP_07826190.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
gi|313119000|gb|EFR42205.1| ribosome biogenesis GTP-binding protein YlqF [Dialister
microaerophilus UPII 345-E]
Length = 286
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA R I LK D+ +E+ D+RIP+SSA+P ++ + K R+I LNK DL
Sbjct: 3 IQWFPGHMAKTKRLITEHLKAVDVAVELLDARIPMSSANPMVENLVQNKPRIIVLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ I KW+ +F D I ++ ++ +KL+ L+ K K V+ + ++
Sbjct: 63 ADVKITEKWIEYFKKENIDVIPVSTYNGKDKKKLINLIREKAKPVLEKWQRRGLKNRSVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M++G+PNVGKS LIN + +K PG T+ +++ + +
Sbjct: 123 IMILGIPNVGKSTLINFLSG-----------SKATRTANTPGHTKGKQWVRLSS--GLDL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D LKLA +G+I + + LLA L
Sbjct: 170 LDTPGVLWPKFEDQNAALKLAATGAIAGEIFDSYEVVTTLLAAL 213
>gi|422826354|ref|ZP_16874533.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
gi|324994472|gb|EGC26385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK678]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|422865484|ref|ZP_16912109.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
gi|327489684|gb|EGF21475.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1058]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|331085162|ref|ZP_08334248.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330407945|gb|EGG87435.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+RIP+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEEKQNDAWAEYFKEKGFSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D GL+LA GSIKD ++ E +A ++ L +
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAMEMITFLTEK 216
>gi|422848671|ref|ZP_16895347.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
gi|325689692|gb|EGD31696.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK115]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMSDKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|422846663|ref|ZP_16893346.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
gi|325687471|gb|EGD29492.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK72]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|386317016|ref|YP_006013180.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494750|ref|YP_006904596.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417928741|ref|ZP_12572129.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127303|gb|ADX24600.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|340766615|gb|EGR89141.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|410439910|emb|CCI62538.1| GTP-binding protein engA [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|194744004|ref|XP_001954488.1| GF18288 [Drosophila ananassae]
gi|190627525|gb|EDV43049.1| GF18288 [Drosophila ananassae]
Length = 322
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 164/364 (45%), Gaps = 87/364 (23%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM + I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMKQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDLANP----NILNKWVRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL P ++L + + F +CK V +L L + E
Sbjct: 80 VDLLGPKKQKSVLQQLRQQQPELKNILFTNCKD-------QRNHGVLDILPLATRLVNES 132
Query: 130 --ISREPTLL--VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
+R T VM++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRTQTTENNVMIIGVPNVGKSSIINVLRNVHL------KKKSAARVGAEAGITRAVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LNT
Sbjct: 187 ERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNT- 245
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR-ALH 303
H ++ + E H D N S V L QR L
Sbjct: 246 ----HRKY---------AYVEKLHLSAPSD---------NISAV-----LAEYAQREELF 278
Query: 304 VSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPF 363
+ ++DG VE +L L ++KF+ FRTG+LG
Sbjct: 279 HKVKQYDGRVEIMTNL-------------------------LAAARKFIHFFRTGQLGSI 313
Query: 364 ILDD 367
LD+
Sbjct: 314 NLDE 317
>gi|225868571|ref|YP_002744519.1| GTPase protein [Streptococcus equi subsp. zooepidemicus]
gi|225701847|emb|CAW99305.1| putative GTPase protein [Streptococcus equi subsp. zooepidemicus]
Length = 284
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPT 135
DLA+ KW ++++ +AINA +++V+++ EL+ KL+ + R + T
Sbjct: 62 DLADSTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K ATVG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|422884181|ref|ZP_16930630.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
gi|332360874|gb|EGJ38680.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK49]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|320546753|ref|ZP_08041064.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
gi|320448632|gb|EFW89364.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus equinus
ATCC 9812]
Length = 284
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W ++F+S +A+N+ +S+V+ + E + KL+E ++ T
Sbjct: 62 DLADSNRTKEWHKYFESQGIKTLAVNSKEQSTVKLVTEAAKSLMADKLAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLL 201
>gi|171779428|ref|ZP_02920392.1| hypothetical protein STRINF_01273 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282045|gb|EDT47476.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 309
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 27 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 86
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W R+F+S +A+N+ +++V+ + E + KL+E ++ T
Sbjct: 87 DLADSNRTKEWRRYFESQGIKTLAVNSKEQATVKLVTEAAKSLMADKLAKLRERGIQKET 146
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 147 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAIVGNKPGVTKGQQWLK--SNKDL 193
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 194 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLL 226
>gi|374296156|ref|YP_005046347.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
gi|359825650|gb|AEV68423.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
clariflavum DSM 19732]
Length = 290
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 24/253 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHMA R + +K+ D+VIE+ D+RIP+SS +P K ++I LNK D
Sbjct: 2 NIQWYPGHMAKTRRILAENIKLVDVVIELLDARIPISSKNPDFDDIFKNKPKIIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ I + W + ++S I I++ ++ L ++ +K+ I R+ +
Sbjct: 62 LADEKISSSWSKWYNSKGYANIFIDSIKGKNINLLKNKMQDLMKDKIERDKLKGRISRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS+LIN I A A G PGVT+ + + I
Sbjct: 122 RTMIVGIPNVGKSSLINKIAGRA-----------SAVTGDRPGVTRGKQWINVNDK--IQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P + E G+ LA++G+IKD V+ +A L L L+ ++L R
Sbjct: 169 LLDTPGILWPKFENPEVGINLAITGAIKDDVIDTVELASILFEKL----ARLYPKNLMER 224
Query: 257 TEVSQSETENKHE 269
+++ E + E
Sbjct: 225 YKLTSIEGKTGFE 237
>gi|422860127|ref|ZP_16906771.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
gi|327470025|gb|EGF15489.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK330]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|422851604|ref|ZP_16898274.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
gi|325694492|gb|EGD36401.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK150]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|340377255|ref|XP_003387145.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 12/221 (5%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
NWFPGHMA + +++ LVIEV D+RIPL+ + L+ S ++++ LNK DL
Sbjct: 11 NWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK--FSKHKKILVLNKYDLT 68
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQ---KLLELVELKLKEVISREPTLLVMVVG 142
+P + + + DS I N R+ + L+ +KL + + + VM+VG
Sbjct: 69 DPKGMKLYNENDDSVP--VILTNCRGRNQISGNITALQKAIIKLTKDDDIKNGVKVMIVG 126
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTP 201
+PNVGKS+LIN++ +++ P K A + PG T+ ++ F KI+ P I +LDTP
Sbjct: 127 MPNVGKSSLINALRRLS----PGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTP 182
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
G+++P+I D E LKLA G++ VGE IA Y+L +LN
Sbjct: 183 GIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKMLN 223
>gi|16078668|ref|NP_389487.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309480|ref|ZP_03591327.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313805|ref|ZP_03595610.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318729|ref|ZP_03600023.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323000|ref|ZP_03604294.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|350265918|ref|YP_004877225.1| hypothetical protein GYO_1956 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386758328|ref|YP_006231544.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402775850|ref|YP_006629794.1| ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|430758972|ref|YP_007209693.1| hypothetical protein A7A1_3480 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|81555913|sp|O31743.1|RBGA_BACSU RecName: Full=Ribosome biogenesis GTPase A
gi|33358156|pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
gi|2633977|emb|CAB13478.1| ribosome biogenesis GTPase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|349598805|gb|AEP86593.1| YlqF [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|384931610|gb|AFI28288.1| ribosomal biogenesis GTPase [Bacillus sp. JS]
gi|402481032|gb|AFQ57541.1| Ribosome biogenesis GTPase A [Bacillus subtilis QB928]
gi|407959011|dbj|BAM52251.1| ribosomal biogenesis GTPase [Synechocystis sp. PCC 6803]
gi|407964588|dbj|BAM57827.1| ribosomal biogenesis GTPase [Bacillus subtilis BEST7003]
gi|430023492|gb|AGA24098.1| Hypothetical protein YlqF [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF++ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|422821227|ref|ZP_16869420.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
gi|324991141|gb|EGC23075.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK353]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQNYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|225374457|ref|ZP_03751678.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
gi|225213695|gb|EEG96049.1| hypothetical protein ROSEINA2194_00072 [Roseburia inulinivorans DSM
16841]
Length = 284
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 24/245 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R+I +NK DL++
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKARLIIMNKSDLSD 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVM 139
N +W +F + ++A +++ ++ + +V KE I R+ + M
Sbjct: 65 ENQNKEWAAYFKKMGCYVVGLDARTKAGMKTVTNVVMEACKEKIERDRRRGILNRPVRAM 124
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
VVG+PNVGKS INS A A G PGVT+ ++ ++ +LD
Sbjct: 125 VVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNLELLD 171
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV 259
TPG+L P D GL+LAL G+IKD ++ + ++ L+ VL + L +R V
Sbjct: 172 TPGILWPKFEDQMVGLRLALIGAIKDEILNIDELSLELIKVLTRDYAGI----LTDRYGV 227
Query: 260 SQSET 264
+++T
Sbjct: 228 DETQT 232
>gi|148998410|ref|ZP_01825852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225861096|ref|YP_002742605.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae Taiwan19F-14]
gi|298230995|ref|ZP_06964676.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255437|ref|ZP_06979023.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502842|ref|YP_003724782.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|307067683|ref|YP_003876649.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|387788308|ref|YP_006253376.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|417312595|ref|ZP_12099307.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|418076302|ref|ZP_12713540.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|418083062|ref|ZP_12720262.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|418085205|ref|ZP_12722387.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|418093850|ref|ZP_12730979.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|418100194|ref|ZP_12737282.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|418119865|ref|ZP_12756816.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|418141608|ref|ZP_12778421.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|418150615|ref|ZP_12787364.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|418152758|ref|ZP_12789498.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|418157500|ref|ZP_12794216.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|418164416|ref|ZP_12801088.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|418171346|ref|ZP_12807971.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|418195374|ref|ZP_12831854.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|418197961|ref|ZP_12834423.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|418223113|ref|ZP_12849755.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|418227602|ref|ZP_12854221.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|419425160|ref|ZP_13965358.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|419427112|ref|ZP_13967295.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|419429290|ref|ZP_13969457.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|419436003|ref|ZP_13976095.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|419438236|ref|ZP_13978306.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|419444653|ref|ZP_13984668.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|419446789|ref|ZP_13986794.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|419448772|ref|ZP_13988769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|419451475|ref|ZP_13991461.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|419501748|ref|ZP_14041434.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|419518929|ref|ZP_14058536.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|419528549|ref|ZP_14068091.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|421234138|ref|ZP_15690759.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|421249446|ref|ZP_15705906.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|421287527|ref|ZP_15738293.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|421314308|ref|ZP_15764898.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
gi|147755807|gb|EDK62852.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP11-BS70]
gi|225726497|gb|ACO22348.1| GTP-binding protein [Streptococcus pneumoniae Taiwan19F-14]
gi|298238437|gb|ADI69568.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|306409220|gb|ADM84647.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|327389303|gb|EGE87648.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA04375]
gi|353749429|gb|EHD30074.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47502]
gi|353756091|gb|EHD36693.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA44288]
gi|353757160|gb|EHD37754.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47281]
gi|353765726|gb|EHD46268.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA49138]
gi|353772903|gb|EHD53402.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 7286-06]
gi|353788978|gb|EHD69374.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA18523]
gi|353805859|gb|EHD86133.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA13455]
gi|353815399|gb|EHD95617.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA14798]
gi|353819403|gb|EHD99601.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16121]
gi|353823948|gb|EHE04122.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA16833]
gi|353831693|gb|EHE11818.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA17371]
gi|353835863|gb|EHE15954.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA19451]
gi|353861901|gb|EHE41834.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47688]
gi|353863701|gb|EHE43623.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae GA47778]
gi|353879731|gb|EHE59554.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 5185-06]
gi|353883203|gb|EHE63012.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae 3063-00]
gi|379138050|gb|AFC94841.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae ST556]
gi|379538241|gb|EHZ03422.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA13499]
gi|379551238|gb|EHZ16333.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA11856]
gi|379564572|gb|EHZ29568.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA17719]
gi|379572346|gb|EHZ37303.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA19923]
gi|379602109|gb|EHZ66881.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47628]
gi|379614329|gb|EHZ79039.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7879-04]
gi|379615845|gb|EHZ80550.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 8190-05]
gi|379618565|gb|EHZ83240.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 5652-06]
gi|379620047|gb|EHZ84713.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 7533-05]
gi|379623180|gb|EHZ87814.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae EU-NP02]
gi|379623830|gb|EHZ88463.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae 4075-00]
gi|379641908|gb|EIA06443.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA08825]
gi|395601894|gb|EJG62040.1| hypothetical protein AMCSP02_001139 [Streptococcus pneumoniae
2061617]
gi|395614067|gb|EJG74089.1| hypothetical protein AMCSP19_001070 [Streptococcus pneumoniae
2082239]
gi|395889936|gb|EJH00943.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA58771]
gi|395914808|gb|EJH25652.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA47562]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLIKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|149025508|ref|ZP_01836441.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|418102736|ref|ZP_12739811.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|419475537|ref|ZP_14015377.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|419486690|ref|ZP_14026455.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|421209001|ref|ZP_15666017.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|421225031|ref|ZP_15681771.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|421240691|ref|ZP_15697237.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
gi|147929380|gb|EDK80377.1| ribosomal biogenesis GTPase [Streptococcus pneumoniae SP23-BS72]
gi|353776224|gb|EHD56702.1| ribosome biogenesis GTPase A [Streptococcus pneumoniae NP070]
gi|379561082|gb|EHZ26103.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA14688]
gi|379587323|gb|EHZ52172.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pneumoniae GA44128]
gi|395574206|gb|EJG34786.1| hypothetical protein AMCSP11_001185 [Streptococcus pneumoniae
2070005]
gi|395589726|gb|EJG50042.1| hypothetical protein AMCSP06_001164 [Streptococcus pneumoniae
2070768]
gi|395608482|gb|EJG68576.1| hypothetical protein AMCSP17_001092 [Streptococcus pneumoniae
2080913]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 FRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|302191335|ref|ZP_07267589.1| hypothetical protein LineA_04927 [Lactobacillus iners AB-1]
gi|309804171|ref|ZP_07698249.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|309809273|ref|ZP_07703142.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|312871435|ref|ZP_07731530.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|312872375|ref|ZP_07732445.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|325911972|ref|ZP_08174374.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|329921303|ref|ZP_08277741.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
gi|308163754|gb|EFO66023.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 11V1-d]
gi|308170386|gb|EFO72410.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 2503V10-D]
gi|311092198|gb|EFQ50572.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2062A-h1]
gi|311093088|gb|EFQ51437.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 3008A-a]
gi|325476157|gb|EGC79321.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 143-D]
gi|328934595|gb|EGG31099.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
SPIN 1401G]
Length = 279
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 27/260 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHM A ++ +L + D++IEV D+R+P+SS +P + ++ K +I LNK
Sbjct: 2 ANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPT 135
DLA+ WV+ F + ++A +++ L++L+++ K+ + ++EP
Sbjct: 62 DLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPV 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN R + T VG PGVT+ K +I
Sbjct: 122 IKVAIAGIPNCGKSTIIN--------RLVGRNAT---IVGDKPGVTRGQNWLK--TDTNI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D GLKLA G+IKDSV + ++ ++L L ++LN
Sbjct: 169 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLRE-------QYLNL 221
Query: 256 RTEVSQSETENKHEYNLKDL 275
+ ++ E + N DL
Sbjct: 222 LVDFCKTSAEKIEKINDIDL 241
>gi|321315371|ref|YP_004207658.1| GTPase YlqF [Bacillus subtilis BSn5]
gi|320021645|gb|ADV96631.1| GTPase YlqF [Bacillus subtilis BSn5]
Length = 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF++ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|452914121|ref|ZP_21962748.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
gi|452116541|gb|EME06936.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus subtilis
MB73/2]
Length = 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF++ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|259500646|ref|ZP_05743548.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315653519|ref|ZP_07906440.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
gi|259168030|gb|EEW52525.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
DSM 13335]
gi|315489210|gb|EFU78851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
ATCC 55195]
Length = 281
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 27/260 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHM A ++ +L + D++IEV D+R+P+SS +P + ++ K +I LNK
Sbjct: 4 ANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKA 63
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPT 135
DLA+ WV+ F + ++A +++ L++L+++ K+ + ++EP
Sbjct: 64 DLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPV 123
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN R + T VG PGVT+ K +I
Sbjct: 124 IKVAIAGIPNCGKSTIIN--------RLVGRNAT---IVGDKPGVTRGQNWLK--TDTNI 170
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D GLKLA G+IKDSV + ++ ++L L ++LN
Sbjct: 171 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLRE-------QYLNL 223
Query: 256 RTEVSQSETENKHEYNLKDL 275
+ ++ E + N DL
Sbjct: 224 LVDFCKTSAEKIEKINDIDL 243
>gi|291546335|emb|CBL19443.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus sp.
SR1/5]
Length = 285
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 NVQWYPGHMTKAKRQMQEDIKLIDLIIELVDARVPLSSRNPDIDELGKNKARMILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ W+ +F ++I++ ++ S++ + + KE R+ +
Sbjct: 62 LADERQNRAWMEYFKEKGIYAVSIDSRNKGSMKAVSAAITEACKEKTERDRRRGIKNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV G+PNVGKS IN+ A A G PGVT+ ++ S+
Sbjct: 122 RAMVAGIPNVGKSTFINTFAGKAC-----------AKTGNKPGVTKGKQWIRLNK--SVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G++LA GSIKD ++ E +A L+ L
Sbjct: 169 LLDTPGILWPKFEDQEVGMRLAYIGSIKDDILNIEELALGLIGYL 213
>gi|422854280|ref|ZP_16900944.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
gi|325696516|gb|EGD38406.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK160]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|323351560|ref|ZP_08087214.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
gi|322122046|gb|EFX93772.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis VMC66]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIF 209
>gi|428279199|ref|YP_005560934.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|291484156|dbj|BAI85231.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. natto
BEST195]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF+ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQRWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|219669770|ref|YP_002460205.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
gi|219540030|gb|ACL21769.1| GTP1/OBG protein [Desulfitobacterium hafniense DCB-2]
Length = 276
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 21/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA A R + +L+ D+VIE+ D+R+P SS +P LQ L K ++I LNK D
Sbjct: 2 SIQWFPGHMAKAKRLLLEQLRWVDVVIELGDARLPESSRNPLLQEMLGDKPKIIILNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+P W R +A++A S + V K++ VE + I R ++
Sbjct: 62 LADPYWTEIWTRKLRQS-NPVLAVSATSGAGVGKIVPEVERLMAHKIEKWTAKGIRARSI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+VG+PN GKS+L+N++ A +A G PGVT+ +I R +
Sbjct: 121 RVMIVGIPNCGKSSLVNNLIGSA-----------KAKTGNKPGVTRGNQWIRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KL G+I+D V+ E ++ ++L L
Sbjct: 168 LLDTPGLLWPKFEDPEVGKKLGAVGAIRDEVLNLEELSLWVLEQL 212
>gi|296330820|ref|ZP_06873295.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674338|ref|YP_003866010.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|338819266|sp|E0TTS5.1|RBGA_BACPZ RecName: Full=Ribosome biogenesis GTPase A
gi|296151825|gb|EFG92699.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412582|gb|ADM37701.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF++ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|417793389|ref|ZP_12440667.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
gi|334273117|gb|EGL91468.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus oralis
SK255]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + I R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTNAAKKLMADKIVRQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD ++ + + +
Sbjct: 169 EILDTPGILCPKFEDDAVALKLALTGAIKDQLLPMDEVTIF 209
>gi|282883184|ref|ZP_06291783.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
lacrimalis 315-B]
gi|281296996|gb|EFA89493.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
lacrimalis 315-B]
Length = 277
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ + I+D IE+ D+RIP SS++P L + K+++I NK D
Sbjct: 2 NINWYPGHMKKTIEDIERKKLITDFCIEIIDARIPFSSSNPLLNEVIKGKKKLIIFNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINA---HSRSSVQKLLELVELKLKEVISR---EPTLL 137
L + N+ +KW+ H+ S + + NA + + ++ +EL+ ++K+ + L
Sbjct: 62 LCDENMTSKWISHYKSKDINVLKYNATKPNVNAVIKASMELMAEEIKKFKDKGINHGALK 121
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PN GKS IN I K A G PG+T+ ++ ++++
Sbjct: 122 AMVVGIPNSGKSTFINGISG-----------RKSAKTGNTPGITKTNQWIRL--NKNLHL 168
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P+ G+ LA +G+IKD ++ E + L+ LN
Sbjct: 169 LDTPGVLWHKFPE-NVGINLAFTGAIKDEIMDRETLGLKLIERLNN 213
>gi|337750071|ref|YP_004644233.1| protein RbgA [Paenibacillus mucilaginosus KNP414]
gi|336301260|gb|AEI44363.1| RbgA [Paenibacillus mucilaginosus KNP414]
Length = 294
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DL IE+ D+RIPLSS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMTRARRQIQDKLKLIDLAIELLDARIPLSSRNPMIDEILLNKPRLVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P +WV +F + + I++ + V++++ + L+E I+ + +
Sbjct: 62 LADPERTKEWVAYFAEQGLNAVPIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKGINPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINRMA-----------GRKIAATGDKPGVTKGQQWIKVGT--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D G +LA +G+IK+ ++ E IA + + L
Sbjct: 169 LLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPEEIALFAMRYLT 214
>gi|340381926|ref|XP_003389472.1| PREDICTED: mitochondrial GTPase 1-like [Amphimedon queenslandica]
Length = 294
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 12/221 (5%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
NWFPGHMA + +++ LVIEV D+RIPL+ + L+ S ++++ LNK DL
Sbjct: 11 NWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK--FSKHKKILVLNKYDLT 68
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQ---KLLELVELKLKEVISREPTLLVMVVG 142
+P + + + DS I N R+ + L+ +KL + + + VM+VG
Sbjct: 69 DPKGMKLYNENDDSVP--VILTNCRGRNQISGNITALQKAIIKLTKDDDIKNGVKVMIVG 126
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTP 201
+PNVGKS+LIN++ +++ P K A + PG T+ ++ F KI+ P I +LDTP
Sbjct: 127 MPNVGKSSLINALRRLS----PGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTP 182
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
G+++P+I D E LKLA G++ VGE IA Y+L LN
Sbjct: 183 GIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKTLN 223
>gi|379722919|ref|YP_005315050.1| protein RbgA [Paenibacillus mucilaginosus 3016]
gi|386725697|ref|YP_006192023.1| protein RbgA [Paenibacillus mucilaginosus K02]
gi|378571591|gb|AFC31901.1| RbgA [Paenibacillus mucilaginosus 3016]
gi|384092822|gb|AFH64258.1| protein RbgA [Paenibacillus mucilaginosus K02]
Length = 294
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ DL IE+ D+RIPLSS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMTRARRQIQDKLKLIDLAIELLDARIPLSSRNPMIDEILLNKPRLVLLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
LA+P +WV +F + + I++ + V++++ + L+E I+ + +
Sbjct: 62 LADPERTKEWVAYFAEQGLNAVPIDSVGGNPVKEIMNRSKDLLEEKIAAQVRKGINPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + K A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINRMA-----------GRKIAATGDKPGVTKGQQWIKVGT--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D G +LA +G+IK+ ++ E IA + + L
Sbjct: 169 LLDTPGILWPKFEDQTVGFRLAATGAIKEEILHPEEIALFAMRYLT 214
>gi|406577937|ref|ZP_11053511.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|406587074|ref|ZP_11061987.1| GTPase YlqF [Streptococcus sp. GMD1S]
gi|419814646|ref|ZP_14339414.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|419817241|ref|ZP_14341408.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404458911|gb|EKA05297.1| GTPase YlqF [Streptococcus sp. GMD6S]
gi|404466256|gb|EKA11605.1| GTPase YlqF [Streptococcus sp. GMD4S]
gi|404471552|gb|EKA16063.1| GTPase YlqF [Streptococcus sp. GMD2S]
gi|404473438|gb|EKA17776.1| GTPase YlqF [Streptococcus sp. GMD1S]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIARQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEIVALKLALTGAIKDQLL 201
>gi|398310701|ref|ZP_10514175.1| GTPase YlqF [Bacillus mojavensis RO-H-1]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF++ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKDILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|422870916|ref|ZP_16917409.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
gi|328946297|gb|EGG40441.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1087]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMDEVTIF 209
>gi|414563982|ref|YP_006042943.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847047|gb|AEJ25259.1| GTPase protein [Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 284
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPT 135
DLA+ KW ++++ +AINA +++V+++ EL+ KL+ + R + T
Sbjct: 62 DLADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K ATVG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|315038208|ref|YP_004031776.1| GTP binding protein [Lactobacillus amylovorus GRL 1112]
gi|325956662|ref|YP_004292074.1| GTP binding protein [Lactobacillus acidophilus 30SC]
gi|385817547|ref|YP_005853937.1| GTP binding protein [Lactobacillus amylovorus GRL1118]
gi|312276341|gb|ADQ58981.1| GTP binding protein [Lactobacillus amylovorus GRL 1112]
gi|325333227|gb|ADZ07135.1| GTP binding protein [Lactobacillus acidophilus 30SC]
gi|327183485|gb|AEA31932.1| GTP binding protein [Lactobacillus amylovorus GRL1118]
Length = 279
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ ++ + D+++EV D+RIP +S +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKMGLIDVLVEVLDARIPEASRNPMIEELVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+P + +W + + + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPALTKEWAKKLNGPDKYVLALDSLHNTNMQKLISLVKKAASEKTKKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + + R A VG PGVT+ K + +I
Sbjct: 122 IRIALTGIPNCGKSTVINRL----VGR-------NVAEVGNKPGVTKGQKWLKTS--ANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDSV + +A Y+L
Sbjct: 169 QVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVL 211
>gi|312862638|ref|ZP_07722878.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
gi|311101498|gb|EFQ59701.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
vestibularis F0396]
Length = 284
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F++ +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFETQGIKTLAINSKEQSTVKLVTDAAKSLMDDKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|225870571|ref|YP_002746518.1| ribosomal biogenesis GTPase [Streptococcus equi subsp. equi 4047]
gi|225699975|emb|CAW93947.1| putative GTPase protein [Streptococcus equi subsp. equi 4047]
Length = 284
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPT 135
DLA+ KW ++++ +AINA +++V+++ EL+ KL+ + R + T
Sbjct: 62 DLADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLRRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K ATVG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|167758981|ref|ZP_02431108.1| hypothetical protein CLOSCI_01327 [Clostridium scindens ATCC 35704]
gi|336422972|ref|ZP_08603111.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
gi|167663388|gb|EDS07518.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium scindens
ATCC 35704]
gi|336006818|gb|EGN36850.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ DLVIE+ D+RIP+SS +P + K R+I LNK DL
Sbjct: 3 FQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPVSSRNPDIDELGKNKSRMILLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A + W +F + +N+ ++ + +++ KE + R+ +
Sbjct: 63 AEDKWNDAWAEYFREKGFFVVKLNSKKGGGLKSIQGVIQEACKEKMERDRKRGILNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS IN++ A A G PGVT+ ++ + + +
Sbjct: 123 AMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRLNKQ--VEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D + GL+LA GSIKD ++ E +A L+ LN
Sbjct: 170 LDTPGILWPKFEDQKVGLRLAFIGSIKDEILNTEELAAELIKFLNA 215
>gi|422823564|ref|ZP_16871752.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
gi|324992891|gb|EGC24811.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK405]
Length = 283
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + + R+ T
Sbjct: 62 DLADPVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLERQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|227510327|ref|ZP_03940376.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227189979|gb|EEI70046.1| GTP-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 290
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + + + D+V E+ D+RIP +S +P + K + L KKDL
Sbjct: 5 IQWFPGHMAKAIRQFEENIGLVDIVFEIIDARIPYASQNPEVARITGEKPHLFILTKKDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + +W+ F S Q IA++A ++ ++ +L ++ L E ++RE +
Sbjct: 65 ADPRLTQRWLDSFKSKGQPAIAVDAKTKFNIGNVLSVISPLLSEKLAREEQRGMKKRPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VGVPNVGKS ++N + ++R + A VG PGVT+ K + +
Sbjct: 125 AISVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGVTKGQQWLKAGK--ELEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P E KLAL+G+IKDSV + IA + L
Sbjct: 172 LDTPGILWPKFESQEIANKLALTGAIKDSVFASDDIALFGL 212
>gi|225028007|ref|ZP_03717199.1| hypothetical protein EUBHAL_02276 [Eubacterium hallii DSM 3353]
gi|224954721|gb|EEG35930.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium hallii
DSM 3353]
Length = 282
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ D+V+E+ D+R+P SS +P + K R+I LNK D+
Sbjct: 3 FQWYPGHMTKARRMMQENIKLIDIVVELVDARVPFSSKNPDIDELAKNKYRLIVLNKADM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIA-INAHSRSSVQKLLELVELKLKEVISREPT-------L 136
A+ W +F++ K ++A +N+ + ++++ L+E +E +R+ L
Sbjct: 63 ADAKTTAAWQNYFEA-KGFFVAKVNSQKGAGMKEVKSLIEKACQEKKARDKKRGILNRPL 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS A A G PGVT+ KI ++
Sbjct: 122 RAMVVGIPNVGKSTFINSFAGKAC-----------AKTGNKPGVTKGKQWIKI--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LAL GSIK+ ++ +A + L
Sbjct: 169 LLDTPGILWPKFEDQAVGLRLALIGSIKEEILNTTEMAMEFIGFL 213
>gi|319892259|ref|YP_004149134.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
gi|317161955|gb|ADV05498.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
pseudintermedius HKU10-03]
Length = 290
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ NKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPFSSRNPMIDEVIQQKPRVVIFNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N + KW F +A++A ++ + +E RE +
Sbjct: 63 TNLKEMEKWYAFFREKGAYPVAVDAKHGKGLKNVEAAAIEATREKFEREKVKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANRSI-----------AQTGNKPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KL+L+G+IKDS+V + +A Y L L
Sbjct: 170 LDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLDEVAIYGLEFL 213
>gi|418033249|ref|ZP_12671726.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351469397|gb|EHA29573.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 282
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF+ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|386362702|ref|YP_006072033.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
gi|350277111|gb|AEQ24479.1| ribosome biogenesis GTPase A [Streptococcus pyogenes Alab49]
Length = 282
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ +W +++S +AIN+ +S+V+K+ E + + + I R + T
Sbjct: 62 DLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|306829521|ref|ZP_07462711.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
gi|304428607|gb|EFM31697.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus mitis
ATCC 6249]
Length = 312
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 31 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLNKIVGDKPKLLILNKA 90
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W ++F+S +AIN+ +V+ + + + + + I+R+ T
Sbjct: 91 DLADPVMTKEWRQYFESQGIQTLAINSKEHVTVKVVTDAAKKLMADKIARQKERGIKIET 150
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 151 LRTMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLKT--NKDL 197
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 198 EILDTPGILWPKFEDDAVALKLALTGAIKDQLL 230
>gi|258514488|ref|YP_003190710.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
gi|257778193|gb|ACV62087.1| GTP-binding protein HSR1-related [Desulfotomaculum acetoxidans DSM
771]
Length = 283
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I W+PGHMA R + LK+ D+V+E+ D+RIP SS +P + LS K R+I LNK D
Sbjct: 2 DIQWYPGHMAKTKRLLLENLKLVDVVVELLDARIPCSSRNPVINDLLSKKPRLIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ-------KLLELVELKLKEVISREPTL 136
LA+PN W R + +N+ S ++ KL E V KLK R +
Sbjct: 62 LADPNYTALWKRELAEPGAMVVDVNSVKGSGIKAITPALNKLAEEVMNKLKNKGRRTRAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ K K G PGVT+ K+A +
Sbjct: 122 RCMVVGIPNVGKSFFINTL-----------VKRKITKTGDKPGVTRGQQWIKVAK--DLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D E KLA++G+IK V+
Sbjct: 169 LLDTPGILWPKFDDQEVAYKLAVTGAIKSEVL 200
>gi|328957388|ref|YP_004374774.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
gi|328673712|gb|AEB29758.1| ribosomal biogenesis GTPase [Carnobacterium sp. 17-4]
Length = 287
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K+ D+V E+ D+R+PLSS +P L + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKIKLVDIVFELVDARLPLSSRNPILDEIIGEKPRIIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR--EP-TL 136
LA+P KWV +F+ + I A +++L+ EL++ K ++ +P +
Sbjct: 62 LADPLETKKWVAYFNDQGIAAVPIVAQEGHGMKQLMAKAKELLQPKFDRRAAKGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS LIN RF K A G PGVT+ A + +
Sbjct: 122 RAMSIGIPNVGKSTLIN--------RF---VKKNIAQTGNKPGVTK--AQQWLKLGKELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P D E G KLAL+G+IKD+++ + IA Y L + R
Sbjct: 169 LLDTPGILWPKFEDPEIGKKLALTGAIKDTILQLDEIAMYGLEEMKIR 216
>gi|375088583|ref|ZP_09734921.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
gi|374561548|gb|EHR32887.1| ribosome biogenesis GTP-binding protein YlqF [Dolosigranulum pigrum
ATCC 51524]
Length = 290
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA ATR + +LK+ D+V E+ D+RIPLSS++P L + K RV L K D
Sbjct: 2 TIQWFPGHMAKATREFQEKLKLVDVVFELLDARIPLSSSNPSLDEIIGDKPRVKILMKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE-----LVELKLKEVIS--REPTL 136
LA+ I ++W+ ++ + NA V +L L E K K + R +
Sbjct: 62 LADAQITSQWLTYYKENNIAVVPYNAKRNQDVSPILAAADDVLTEYKQKRIDKGLRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+ VG+PNVGKS LIN RF + A G PGVT+ A I ++ +
Sbjct: 122 RAVSVGIPNVGKSTLIN--------RFAGKNI---AQTGNRPGVTK--AQQWIKYKNKLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D G LA++G+IKD+++ + +A +++A
Sbjct: 169 LLDTPGILWPKFEDQRVGKCLAVTGAIKDTLLHLDDVALFMMAYFT 214
>gi|333905011|ref|YP_004478882.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|333120276|gb|AEF25210.1| GTPase protein [Streptococcus parauberis KCTC 11537]
gi|456370989|gb|EMF49885.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02109]
gi|457095374|gb|EMG25869.1| 50S ribosomal subunit maturation GTPase [Streptococcus parauberis
KRS-02083]
Length = 284
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ ++ +W + ++ +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADKSMTKEWRQFYEKQGIKTLAINSKEQSTVKKVTEAAKDLMADKIQRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D + GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQKVGLKLALTGAIKDQLL 201
>gi|340386672|ref|XP_003391832.1| PREDICTED: mitochondrial GTPase 1-like, partial [Amphimedon
queenslandica]
Length = 271
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 12/221 (5%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
NWFPGHMA + +++ LVIEV D+RIPL+ + L+ S ++++ LNK DL
Sbjct: 11 NWFPGHMARGMKDALRKVQKCHLVIEVHDARIPLTGRNEKLK--FSKHKKILVLNKYDLT 68
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQ---KLLELVELKLKEVISREPTLLVMVVG 142
+P + + + DS I N R+ + L+ +KL + + + VM+VG
Sbjct: 69 DPKGMKLYNENDDSVP--VILTNCRGRNQISGNITALQKAIIKLTKDDDIKNGVKVMIVG 126
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTP 201
+PNVGKS+LIN++ +++ P K A + PG T+ ++ F KI+ P I +LDTP
Sbjct: 127 MPNVGKSSLINALRRLS----PGIGSPKAAPISSRPGYTKTVSTFIKISTDPLIKLLDTP 182
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
G+++P+I D E LKLA G++ VGE IA Y+L +LN
Sbjct: 183 GIMIPNIKDEEMALKLAAVGTLDHRFVGEVNIAAYILKMLN 223
>gi|237742200|ref|ZP_04572681.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256845473|ref|ZP_05550931.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294785221|ref|ZP_06750509.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
gi|229429848|gb|EEO40060.1| GTP-binding protein [Fusobacterium sp. 4_1_13]
gi|256719032|gb|EEU32587.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_36A2]
gi|294486935|gb|EFG34297.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_27]
Length = 292
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 137/253 (54%), Gaps = 29/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVACSLLKKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETEN 266
R ++ + + ++
Sbjct: 228 KERYKLLEEDRDD 240
>gi|402304192|ref|ZP_10823268.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
gi|400375431|gb|EJP28332.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC9]
Length = 304
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 24/227 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHM A R +K LK+ D+V+E+ D+RIP+SSA+P L+ ++ K R+I LNK DL
Sbjct: 13 LQWYPGHMRKAERLVKENLKLVDVVVELLDARIPMSSANPVLREIVAGKTRLIVLNKSDL 72
Query: 85 ANPNILNKWVRHFDSCKQDYIA--INAHSRSSVQKLLELVEL-------KLKEVISREPT 135
A+P WV++F S QD +A ++A S ++L++ ++ KL + ++
Sbjct: 73 ADPTATRAWVQYFAS--QDIVAVPVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPRA 130
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
M++G+PNVGKS+LIN + A R V PGVT+ +I + +
Sbjct: 131 ARCMILGIPNVGKSSLINRLSGGA-----------RTKVENRPGVTRAKQWIRIGAQ--L 177
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LD PG+L P D L+LA +G+I D+V + LL VL+
Sbjct: 178 ELLDMPGILWPKFEDAHAALRLAFTGAISDTVYDVGGVVLQLLRVLH 224
>gi|329117496|ref|ZP_08246213.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
gi|326907901|gb|EGE54815.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
parauberis NCFD 2020]
Length = 284
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ ++ +W + ++ +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADKSMTKEWRQFYEKQGIKTLAINSKEQSTVKKVTEAAKDLMADKIQRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D + GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQKVGLKLALTGAIKDQLL 201
>gi|342732353|ref|YP_004771192.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|418016245|ref|ZP_12655810.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|342329808|dbj|BAK56450.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506580|gb|EGX28874.1| ribosome biogenesis GTP-binding protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
Length = 289
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM + IK+ + + DLVIE+RD+R +S+ +P ++ K ++I L+K D
Sbjct: 5 NINWYPGHMFKTKKEIKNMINLVDLVIEIRDARSVISTTNPDIEMLTKDKPKIIVLSKVD 64
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
LA+ N NKW+ ++ + I ++ +++ + + +K + R TL
Sbjct: 65 LADNNTTNKWIEYYKNQGIPCIDVDIIRNKNIKNIKAQINFLMKSKLDRYRSKGVKNYTL 124
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN I K A VG PGVT+ + I + I
Sbjct: 125 RGMILGIPNVGKSSLINKISN-----------NKIAKVGNRPGVTK--SNQWIKTKWDID 171
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P E GL L GS+KD ++ + + +L L
Sbjct: 172 LLDTPGILWPKFDSTEVGLNLVYIGSVKDEILDVQDVCYNMLEYL 216
>gi|449094297|ref|YP_007426788.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
gi|449028212|gb|AGE63451.1| ribosomal biogenesis GTPase [Bacillus subtilis XF-1]
Length = 282
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF+ ++IN+ + + +++ L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASREILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|377809646|ref|YP_005004867.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
gi|361056387|gb|AEV95191.1| ribosome biogenesis GTP-binding protein YlqF [Pediococcus
claussenii ATCC BAA-344]
Length = 288
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 25/248 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +LK+ D+V E+ D+RIP SS +P +Q + K ++ L K DL
Sbjct: 4 IQWYPGHMAKAIRQVQEKLKLVDIVFELVDARIPESSRNPMIQEVIENKPHLLLLTKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE---------VISREPT 135
A+P +W++++ ++ IAI++ Q ++ LKE +IS E
Sbjct: 64 ADPVETKEWLKYYRQHGENAIAIDSRETKIEQVIIRETNKILKEKIQNKADKGIISHE-- 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M +G+PNVGKS L+N + K A G PGVT+ K H +
Sbjct: 122 IRAMCIGIPNVGKSTLLNHLLN-----------KKVAITGDKPGVTKKQQWLKSPH--GL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL-NTRGTPLHWRHLN 254
+LDTPG+L P D G KLA +G+IK+++ + +A Y L + N L R+
Sbjct: 169 SLLDTPGILWPKFDDQSIGTKLAFTGAIKENLYANDDVALYGLNIFRNKYPAELLSRYKL 228
Query: 255 NRTEVSQS 262
N E+ Q+
Sbjct: 229 NEEELDQN 236
>gi|269118825|ref|YP_003307002.1| GTP-binding protein HSR1-like protein [Sebaldella termitidis ATCC
33386]
gi|268612703|gb|ACZ07071.1| GTP-binding protein HSR1-related protein [Sebaldella termitidis
ATCC 33386]
Length = 285
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 136/267 (50%), Gaps = 30/267 (11%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INW+PGHM I LKI DLVIEV D+RIPLSS +P + K+R+ LNK D
Sbjct: 2 SINWYPGHMKKTKETIAENLKIVDLVIEVLDARIPLSSKNPDISKLAKNKKRLTVLNKVD 61
Query: 84 LANPNILNKWVRHF-DSCKQDYI-AINAHSRSSVQKLLELVE-------LKLKEVISREP 134
LA+ + W +F + DY+ AI+A +++ +L +V+ K K+ R+
Sbjct: 62 LADEREVENWKEYFIRNDISDYVLAISAEKGTNLNELKRIVDEIYIEKLEKAKKKGLRKT 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ ++ G+PNVGKS LIN KTK A VG PG T+ K + +
Sbjct: 122 EVRALIAGIPNVGKSKLINKFAG----------KTK-ARVGDKPGFTRGKQWVKASEK-- 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLN 254
+ +LDTPGVL P D E G LA++GSIKD ++ E + + + G L+
Sbjct: 169 LELLDTPGVLWPKFDDPEVGYSLAITGSIKDDILPIEEVVSVFIDRMRKTG------KLD 222
Query: 255 NRTEVSQSET--ENKHEYNLKDLRPKR 279
+ ET ENK + + D+ +R
Sbjct: 223 QLVKAYNLETDIENKENHEILDILEER 249
>gi|422338234|ref|ZP_16419194.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355372872|gb|EHG20211.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 289
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 137/253 (54%), Gaps = 29/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVASSLLRKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETEN 266
R ++ + + ++
Sbjct: 228 KERYKLLEEDRDD 240
>gi|384455756|ref|YP_005668351.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959722|ref|ZP_12602472.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|417960827|ref|ZP_12603348.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|417962402|ref|ZP_12604612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|417965561|ref|ZP_12607069.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|417967252|ref|ZP_12608411.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|417968292|ref|ZP_12609325.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|418372609|ref|ZP_12964701.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|346984099|dbj|BAK79775.1| ribosomal biogenesis GTPase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380332721|gb|EIA23467.1| Putative GTPase [Candidatus Arthromitus sp. SFB-1]
gi|380335014|gb|EIA25312.1| Putative GTPase [Candidatus Arthromitus sp. SFB-2]
gi|380336373|gb|EIA26391.1| Putative GTPase [Candidatus Arthromitus sp. SFB-4]
gi|380337724|gb|EIA26736.1| Putative GTPase [Candidatus Arthromitus sp. SFB-5]
gi|380337767|gb|EIA26777.1| Putative GTPase [Candidatus Arthromitus sp. SFB-3]
gi|380339957|gb|EIA28612.1| Putative GTPase [Candidatus Arthromitus sp. SFB-co]
gi|380342278|gb|EIA30723.1| Putative GTPase [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 286
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM + IK+ + + DLVIE+RD+R +S+ +P ++ K ++I L+K D
Sbjct: 2 NINWYPGHMFKTKKEIKNMINLVDLVIEIRDARSVISTTNPDIEMLTKDKPKIIVLSKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
LA+ N NKW+ ++ + I ++ +++ + + +K + R TL
Sbjct: 62 LADNNTTNKWIEYYKNQGIPCIDVDIIRNKNIKNIKAQINFLMKSKLDRYRSKGVKNYTL 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN I K A VG PGVT+ + I + I
Sbjct: 122 RGMILGIPNVGKSSLINKISN-----------NKIAKVGNRPGVTK--SNQWIKTKWDID 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P E GL L GS+KD ++ + + +L L
Sbjct: 169 LLDTPGILWPKFDSTEVGLNLVYIGSVKDEILDVQDVCYNMLEYL 213
>gi|254302953|ref|ZP_04970311.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323145|gb|EDK88395.1| possible GTP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 289
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 137/253 (54%), Gaps = 29/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVASSLLRKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETEN 266
R ++ + + ++
Sbjct: 228 KERYKLLEEDRDD 240
>gi|322373052|ref|ZP_08047588.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|421452532|ref|ZP_15901893.1| GTP-binding protein [Streptococcus salivarius K12]
gi|321278094|gb|EFX55163.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
C150]
gi|400182963|gb|EJO17225.1| GTP-binding protein [Streptococcus salivarius K12]
Length = 284
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F S +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRTYFKSQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|21910353|ref|NP_664621.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS315]
gi|28895930|ref|NP_802280.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SSI-1]
gi|21904550|gb|AAM79424.1| putative GTP-binding protein [Streptococcus pyogenes MGAS315]
gi|28811180|dbj|BAC64113.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 282
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ EL+ K+K + R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELIADKIKRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|71903521|ref|YP_280324.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS6180]
gi|94988630|ref|YP_596731.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS9429]
gi|94992453|ref|YP_600552.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS2096]
gi|209559441|ref|YP_002285913.1| ribosomal biogenesis GTPase [Streptococcus pyogenes NZ131]
gi|306827336|ref|ZP_07460623.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|417856859|ref|ZP_12501918.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
gi|71802616|gb|AAX71969.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
gi|94542138|gb|ABF32187.1| GTP-binding protein [Streptococcus pyogenes MGAS9429]
gi|94545961|gb|ABF36008.1| GTP-binding protein [Streptococcus pyogenes MGAS2096]
gi|209540642|gb|ACI61218.1| GTP-binding protein [Streptococcus pyogenes NZ131]
gi|304430483|gb|EFM33505.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes ATCC 10782]
gi|387933814|gb|EIK41927.1| GTPase YlqF [Streptococcus pyogenes HKU QMH11M0907901]
Length = 282
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ +W +++S +AIN+ +S+V+K+ E + + + I R + T
Sbjct: 62 DLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|443632726|ref|ZP_21116905.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347549|gb|ELS61607.1| ribosomal biogenesis GTPase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 282
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF+ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAAVTQQWKEHFEKEGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFQDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|406658358|ref|ZP_11066498.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
gi|405578573|gb|EKB52687.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus iniae
9117]
Length = 284
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV-EL------KLKEVISREPTLL 137
A+ + +W R ++S +AIN+ +S+V+K+ E EL KL++ ++ TL
Sbjct: 64 ADKSRTQEWRRFYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQKLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQLVGLKLALTGAIKDQLL 201
>gi|339301523|ref|ZP_08650621.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
agalactiae ATCC 13813]
gi|319744986|gb|EFV97314.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
agalactiae ATCC 13813]
Length = 283
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P +W ++S +AIN+ +S V+K+ ++ ++ + + I++ + T
Sbjct: 62 DLADPIRTKEWRDFYESQGLKTLAINSKEQSIVKKVTDIAKILMSDKIAKLRGRGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|220931580|ref|YP_002508488.1| HSR1-like GTP-binding protein [Halothermothrix orenii H 168]
gi|219992890|gb|ACL69493.1| GTP-binding protein HSR1-related [Halothermothrix orenii H 168]
Length = 282
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 25/226 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+P HMA A + + LK+ D+V+EV D+RIP SS +P + L K+RVI LNK DL
Sbjct: 2 VQWYPSHMARARKVLIENLKLVDIVVEVLDARIPASSKNPDIDSILDNKKRVIVLNKIDL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSS-----VQKLL----ELVELKLKEVISREPT 135
A+P++ + W+ +F ++ Y + +S + +++LL E + L+E ++
Sbjct: 62 AHPDLTSTWLDYF---RRSYPVMGVNSITGEGIGELKRLLRNEGERINKVLEEKGRQQRP 118
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +MV+G+PNVGKSA +N + + R G PGVT+ K+ +
Sbjct: 119 VRIMVIGIPNVGKSAFLN-----------ILAGSNRVKTGNRPGVTRGKQWLKLGK--GV 165
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P I D ETG KLA++G+I ++ +E A L+ L
Sbjct: 166 QLLDTPGILWPKIEDEETGHKLAITGAIDENNYDKETAAYKLVCYL 211
>gi|313896226|ref|ZP_07829779.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975025|gb|EFR40487.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 303
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 24/229 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
++ W+PGHM A R ++ LK+ D+VIE+ D+RIP+SSA+P L+ ++ K R+I LNK D
Sbjct: 11 HLQWYPGHMRKAERLVQENLKLVDVVIELLDARIPMSSANPVLREIVAGKTRLIVLNKSD 70
Query: 84 LANPNILNKWVRHFDSCKQDYIA--INAHSRSSVQKLLELVEL-------KLKEVISREP 134
LA+P WV++F S QD +A ++A S ++L++ ++ KL + ++
Sbjct: 71 LADPTATRAWVQYFAS--QDIVAVPVDAVKGSGTKELVQAIQKLAAPRTEKLAKHGAKPR 128
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
M++G+PNVGKS+LIN + A R V PGVT+ +I +
Sbjct: 129 AARCMILGIPNVGKSSLINRLSGGA-----------RTKVENRPGVTRAKQWIRIGAQ-- 175
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ +LD PG+L P D L+LA +G+I D+V + LL VL+
Sbjct: 176 LELLDMPGILWPKFEDARAALRLAFTGAISDTVYDVGGVVLQLLRVLHA 224
>gi|50914224|ref|YP_060196.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS10394]
gi|50903298|gb|AAT87013.1| GTP-binding protein [Streptococcus pyogenes MGAS10394]
Length = 282
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|195978101|ref|YP_002123345.1| ribosomal biogenesis GTPase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974806|gb|ACG62332.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 284
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV-EL------KLKEVISREPT 135
DLA+ KW ++++ +AINA +++V+++ E EL +L+E ++ T
Sbjct: 62 DLADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K ATVG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIATVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|419707040|ref|ZP_14234546.1| GTP-binding protein [Streptococcus salivarius PS4]
gi|383283280|gb|EIC81238.1| GTP-binding protein [Streptococcus salivarius PS4]
Length = 284
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKS 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F+ +AIN+ +S+V+ + + + + E I R + T
Sbjct: 62 DLADNNRTKEWRTYFEKQGIKTLAINSKEQSTVKLVTDAAKSLMSEKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|346308009|ref|ZP_08850137.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
gi|345904364|gb|EGX74112.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
4_6_53AFAA]
Length = 284
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKARLIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA W +F + +N+ V+ + +++ K I R+ +
Sbjct: 62 LAEERWNEAWTEYFKKKGFHVVKVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ A A G PGVT+ ++ + +
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKAA-----------AKTGNKPGVTKGKQWIRLNKQ--VE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LAL GSIKD V+ E +A L+ L
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTEELAAELIRFL 213
>gi|262282235|ref|ZP_06060003.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
gi|262261526|gb|EEY80224.1| ribosomal biogenesis GTPase [Streptococcus sp. 2_1_36FAA]
Length = 283
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQESIKFVDFVTVLVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P L +W +F+ +A+N+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRLKEWQTYFEGQGIPTLALNSKEQSAVKKVTDAAKKLMADKLARQKGRGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDEMVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|225568159|ref|ZP_03777184.1| hypothetical protein CLOHYLEM_04233 [Clostridium hylemonae DSM
15053]
gi|225163112|gb|EEG75731.1| hypothetical protein CLOHYLEM_04233 [Clostridium hylemonae DSM
15053]
Length = 282
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+RIP SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARIPQSSRNPDIDELGKNKARLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEEKWNDAWAEYFRKKGFSVVKVNSKKGGGMKSIHGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ + ++ G PGVT+ ++ + +
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKSCTK-----------TGNKPGVTKGKQWIRLNRQ--VE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D + GLKLA GSIKD V+ E +A L+ +
Sbjct: 169 LLDTPGILWPKFEDQQVGLKLAFVGSIKDEVLQTEELAAELIRFM 213
>gi|406026980|ref|YP_006725812.1| GTP-binding protein [Lactobacillus buchneri CD034]
gi|405125469|gb|AFS00230.1| GTP-binding protein [Lactobacillus buchneri CD034]
Length = 290
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R + L + D+V EV D+RIPL+S +P ++ + K + + K+DL
Sbjct: 5 IQWFPGHMAKAIRQFEENLSLVDVVFEVIDARIPLTSQNPEIRRISADKPHLYIMTKRDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + N W+++F Q IAI+A ++ + ++ ++ L++ + RE +
Sbjct: 65 ADPQLTNAWLQYFAEHNQPAIAIDAKTKFGINNVISVISPILRDKLQREQDKGMKKRPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VGVPNVGKS ++N + ++R + A VG PG+T+ K + + +
Sbjct: 125 AISVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGLTKGQQWLKSNDK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P E KLAL+G+IK+SV + IA + L
Sbjct: 172 LDTPGILWPKFSSQEVADKLALTGAIKESVYASDDIALFGL 212
>gi|304404227|ref|ZP_07385889.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
curdlanolyticus YK9]
gi|304347205|gb|EFM13037.1| ribosome biogenesis GTP-binding protein YlqF [Paenibacillus
curdlanolyticus YK9]
Length = 290
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 24/240 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK+ D+ +E+ D+RIPLSS +P + L K R+I L K D
Sbjct: 2 TIQWFPGHMTRARRQIQDKLKLIDIAVELLDARIPLSSRNPMVDEILLNKPRMIVLGKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P W+ F + IA++A + + V ++ L + L E I+++ + +
Sbjct: 62 LADPRETEAWIERFKYEGHECIAVDASTGTRVGEIPGLAKKLLHEKIAKQLSKGINPRAV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
++VG+PNVGKS LIN + + A G PGVT+ K+ +
Sbjct: 122 RALIVGIPNVGKSTLINRLAGRNI-----------AITGDRPGVTKGQQWIKVGT--EME 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P D G +LA++G+I++ ++ E IA + L +R +W L +R
Sbjct: 169 LLDTPGILWPKFEDPIVGYRLAMTGAIREQILNIEDIAFFATRELISR----YWDTLVDR 224
>gi|384175346|ref|YP_005556731.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594570|gb|AEP90757.1| YlqF [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 282
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TL 136
A+ + +W HF+ ++IN+ + + +++ + L+E R +P +
Sbjct: 62 KADAVVTQQWKEHFEKQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>gi|169350422|ref|ZP_02867360.1| hypothetical protein CLOSPI_01190 [Clostridium spiroforme DSM 1552]
gi|169292742|gb|EDS74875.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
spiroforme DSM 1552]
Length = 288
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R I ++K+ D+V+E+ D+R PLSS +P + K R+I + KKDL
Sbjct: 5 IQWFPGHMAKARREISEKMKLIDIVVELVDARAPLSSKNPMFDQICNNKPRLIVMTKKDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ + W+ +F S I +N + + Q+++ + + LKE + RE +
Sbjct: 65 ADDKVTALWIEYFKSKNLHAICVNLKNFNEYQQVINVCKEILKEKMEREAKRGLKSRAMR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS IN + K K G PGVT+ A I +
Sbjct: 125 AMILGIPNVGKSTFINRLA-----------KRKATVTGNRPGVTK--AQQIIRVDKDFEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
DTPGVL P DI +AL GSIK ++ + + Y + L
Sbjct: 172 FDTPGVLWPRFEDINIARNIALIGSIKQDILPLDELFIYAIEYL 215
>gi|94544013|gb|ABF34061.1| GTP-binding protein [Streptococcus pyogenes MGAS10270]
Length = 282
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIKRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|407474073|ref|YP_006788473.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
gi|407050581|gb|AFS78626.1| ribosome biogenesis GTPase A [Clostridium acidurici 9a]
Length = 281
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 20/232 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM ++ LK+ D+VIE+ D+RIP+SS +P + +S K R++ +NK D
Sbjct: 2 NINWYPGHMKKTKELLQANLKLVDIVIELLDARIPISSKNPMIDEIISNKPRLVIMNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
L++ W +F+S + I A + + + K+ V+ LK+ + + ++
Sbjct: 62 LSSEKGNKLWKEYFESKNIPVVFITATNNNGIDKVTNEVQKVLKDKMQKRKEKGIKSTSV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LINS+ K A G PG+T K+ + I
Sbjct: 122 RAMIVGIPNVGKSTLINSLAG-----------RKGAKTGNRPGITTSKQWIKL--KGDIE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPL 248
+LDTPG+L P D L LA +G+IKD ++ E +A L+ L T L
Sbjct: 169 LLDTPGILWPKFEDKRVALNLAFTGAIKDEILDTETLALKLVEKLCAIDTSL 220
>gi|422855507|ref|ZP_16902165.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
gi|327462196|gb|EGF08523.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
sanguinis SK1]
Length = 283
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWRSYFESQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D LKLAL+G+IKD+++ + + +
Sbjct: 169 EILDTPGILWPKFEDEIVALKLALTGAIKDNLLPMDEVTIF 209
>gi|166031982|ref|ZP_02234811.1| hypothetical protein DORFOR_01684 [Dorea formicigenerans ATCC
27755]
gi|166028435|gb|EDR47192.1| ribosome biogenesis GTP-binding protein YlqF [Dorea formicigenerans
ATCC 27755]
Length = 284
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DL+IE+ D+R+PLSS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLIIELVDARVPLSSRNPDIDELGKNKARLIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA W +F + +N+ V+ + +++ K I R+ +
Sbjct: 62 LAEERWNEAWTEYFKKKGFHVVKVNSRKGGGVKSVQSVIQEACKAKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ A A G PGVT+ ++ + +
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKAA-----------AKTGNKPGVTKGKQWIRLNKQ--VE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LAL GSIKD V+ E +A L+ L
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLALIGSIKDEVLQTEELAAELIRFL 213
>gi|139473751|ref|YP_001128467.1| ribosomal biogenesis GTPase [Streptococcus pyogenes str. Manfredo]
gi|134271998|emb|CAM30236.1| putative GTPase protein [Streptococcus pyogenes str. Manfredo]
Length = 282
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISR---EPT 135
DLA+ +W +++S +AIN+ +S+V+K+ EL+ KL+ + R + T
Sbjct: 62 DLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKLQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|296328417|ref|ZP_06870943.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296154491|gb|EFG95283.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 289
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 29/254 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+ +E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVALEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEYVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGMNLAITGAIRDEILPIEDVACSLLRKMLEQG---RWESL 227
Query: 254 NNRTEVSQSETENK 267
R ++ + + ++K
Sbjct: 228 KERYKLLEEDRDDK 241
>gi|347532233|ref|YP_004838996.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
gi|345502381|gb|AEN97064.1| ribosomal biogenesis GTPase [Roseburia hominis A2-183]
Length = 285
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ DLVIE+ D+RIPLSS +P + K R+I +NK DL
Sbjct: 3 FQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGRNKARLILMNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+ W +F +++++ +R+ ++++ +V KE I R+ +
Sbjct: 63 ADEEAGKLWSAYFQKKGYYVVSLDSRNRNGMKQVTAVVMEACKEKIERDRKRGIMNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS INS A A G PGVT+ ++ ++ +
Sbjct: 123 AMVVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRLNK--NVEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPG+L P D GLKLAL G+IKD ++ + ++ L+ VL
Sbjct: 170 LDTPGILWPKFEDQTVGLKLALIGAIKDEILNIDELSLELIKVLTA 215
>gi|307705206|ref|ZP_07642076.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621228|gb|EFO00295.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 283
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S +AIN+ + +V+ + + + + + I+ + T
Sbjct: 62 DLADPAMTKEWRQYFESQGIQTLAINSKEQVTVKVVTDAAKKLMADKIAHQKERGIKIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLKT--NKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|395755860|ref|XP_003780031.1| PREDICTED: mitochondrial GTPase 1-like isoform 2 [Pongo abelii]
Length = 219
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 29/223 (13%)
Query: 39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFD 98
++ LK+ D +IEV D+RIPLS +P Q L K ++ LNK DLA+ K ++H +
Sbjct: 1 MQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIMQHLE 60
Query: 99 S-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--------TLLVMVVGVPNVGKS 149
++ I N +V++++ +V E+I R +MV+GVPNVGKS
Sbjct: 61 GEGLKNVIFTNCVKDENVKQIIPMV----TELIGRSHRYHRRENLEYCIMVIGVPNVGKS 116
Query: 150 ALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGVLVPSI 208
+LINS+ + L K K VG PG+T+ + + +++ RP +++LDTPGVL P I
Sbjct: 117 SLINSLRRQHL------RKGKATRVGGEPGITRAVMSKIQVSERPLLFLLDTPGVLAPRI 170
Query: 209 PDIETGLKLAL---------SGSIKDSVVGEERIAQYLLAVLN 242
+ETGLKLAL +G++ D +VGEE +A YLL LN
Sbjct: 171 ESVETGLKLALCVLTSAAASTGTVLDHLVGEETMADYLLYTLN 213
>gi|421893234|ref|ZP_16323784.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
gi|379981030|emb|CCG27506.1| 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)
[Streptococcus pyogenes NS88.2]
Length = 282
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ +W +++S +AIN+ +S+V+K+ E + + + I R + T
Sbjct: 62 DLADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|302389635|ref|YP_003825456.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
gi|302200263|gb|ADL07833.1| ribosome biogenesis GTP-binding protein YlqF [Thermosediminibacter
oceani DSM 16646]
Length = 279
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 20/241 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I+W+PGHMA R IK L++ D+V+E+ D+R P S+ P + + +K+ +I +NK D
Sbjct: 2 DIHWYPGHMAKTRRIIKENLRLVDVVLEIVDARAPKSTHIPDIHDLIGSKKLLIIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
LA+ +WV F D +++++ R +KL E + +L I R L +VVGV
Sbjct: 62 LADEKTTERWVSFFADNGMDSLSVDSRRRVGFKKLNEFAK-ELSGKIKR--PLRGIVVGV 118
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS+ IN I K A G PG+T+ K + +LDTPG+
Sbjct: 119 PNVGKSSFINQIAG-----------RKGAKTGNKPGITRGKMWLKAGDK--FELLDTPGI 165
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE 263
L P I + GLKLA G IK+ ++ E I+ L+ L R L NR V+ SE
Sbjct: 166 LWPKIEEEAVGLKLAFLGCIKEELLNVEEISLKLIGFLMRRFP----ETLVNRYGVNSSE 221
Query: 264 T 264
Sbjct: 222 N 222
>gi|427798891|gb|JAA64897.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 302
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 13/224 (5%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKDLA 85
WFP HM + ++ +LK D V+E+ D+R+PLS +P ++A K V+ LNK DLA
Sbjct: 27 WFPTHMYTGMKDMQRKLKSVDCVLELHDARVPLSGRNPHFLSMMAAIKPHVLLLNKTDLA 86
Query: 86 NPNILNKWVRHF-DSCKQDYIAINAHSRS-SVQKLLELVE--LKLKEVISREPTL--LVM 139
+PN+ V+ D Q+ + I + S ++ K++ +V ++ E +R +M
Sbjct: 87 DPNLKATVVQQLRDQGTQNILHIRSTEPSRNIDKIVPMVADLIRQSERYNRHEVFDYNIM 146
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVL 198
V+G+PNVGKS+LIN++ ++ L + K VG GVT + KI+ P +Y+L
Sbjct: 147 VIGIPNVGKSSLINALRKMHLGK-----KGPATRVGATAGVTMRVLERIKISEDPLMYLL 201
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
DTPG+L P+ D +T L+LAL G + D +VG +A YLL LN
Sbjct: 202 DTPGILSPATNDPQTALQLALCGCMLDHLVGNVLMADYLLYWLN 245
>gi|313889406|ref|ZP_07823054.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852581|ref|ZP_11909726.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
gi|313122238|gb|EFR45329.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740070|gb|EHI65302.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pseudoporcinus LQ 940-04]
Length = 287
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ + +W + ++S +AIN+ +S+V+K+ + + + + I++ + TL
Sbjct: 64 ADQSRTKEWQQFYESKGIKTLAINSKEQSTVKKVTDAAKALMSDKITKLRQRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKVAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQGVGLKLALTGAIKDQLL 201
>gi|288905301|ref|YP_003430523.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
gi|306831380|ref|ZP_07464539.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978286|ref|YP_004288002.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337746|ref|YP_006033915.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732027|emb|CBI13592.1| putative conserved GTP-binding protein [Streptococcus gallolyticus
UCN34]
gi|304426440|gb|EFM29553.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178214|emb|CBZ48258.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334280382|dbj|BAK27956.1| ribosomal biogenesis GTPase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 284
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ANIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W +F+ +A+N+ +++V+ + + KL+E ++ T
Sbjct: 62 DLADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAARSLMADKLAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLL 201
>gi|255722093|ref|XP_002545981.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136470|gb|EER36023.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 368
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 12/226 (5%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+N F GH A H D+VIEVRD R PL++ + L K+++I +KKDL
Sbjct: 16 LNNFKGHHQKALSKFGHLAPQLDMVIEVRDCRAPLATTNVLFDRVLVGKKKLILYSKKDL 75
Query: 85 A--NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLV--MV 140
+ +L+KW + S +DY+ I+ S+ ++++ ++ KL + + P L + M+
Sbjct: 76 SILKTRVLDKWHK---SKNEDYMFIDCRSQKDGKRVISEIK-KLYNSMEQPPPLGLRSMI 131
Query: 141 VGVPNVGKSALINSIHQIALSR--FPVQEKTKR-ATVGPLPGVTQDIAGF-KIAHRPSIY 196
+G+PNVGKS L+N++ Q+ LS + + K K+ A G PGVT++ + +++ P I
Sbjct: 132 IGMPNVGKSTLVNTLRQVGLSDGDYAISSKIKKVARTGNQPGVTRNTSEIIRLSRDPDIM 191
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
V DTPGV +P+ ++ET L L L G I DS + +A YLL VLN
Sbjct: 192 VYDTPGVFLPTAKNVETMLALGLVGCIHDSFIDPVVLADYLLFVLN 237
>gi|406670839|ref|ZP_11078084.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
gi|405582355|gb|EKB56361.1| ribosome biogenesis GTP-binding protein YlqF [Facklamia hominis
CCUG 36813]
Length = 282
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A R + ++K+ DLVIE+ D+RIP SS +P +Q + K ++ LNK D
Sbjct: 3 TIQWYPGHMAKAKREAQEKIKLVDLVIELADARIPESSRNPIIQEIIGQKPSLLILNKAD 62
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P W ++ S Q ++++A S + + +++ ++++ ++ +
Sbjct: 63 LADPATTRAWEDYYRSQGQQALSLDAQHLRSTKAINRVIQDQMQDFFAKRKAKGIKPRAI 122
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M++G+PNVGKS LIN RF +A G PGVT+ KI
Sbjct: 123 RLMILGIPNVGKSTLIN--------RF---VGKNQAQTGNKPGVTKAQRWLKIGK--EFE 169
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D TG LAL+G+IKD ++ + +A L+ L
Sbjct: 170 LLDTPGILWPKFEDPMTGHHLALTGAIKDQLLPMQELALVLIEQL 214
>gi|374337964|ref|YP_005094673.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
gi|372284073|emb|CCF02315.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
macedonicus ACA-DC 198]
Length = 284
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ANIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W +F+ +A+N+ +++V+ + + + KL+E ++ T
Sbjct: 62 DLADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAAKSLMADKIAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEVVGLKLALTGAIKDQLL 201
>gi|354559594|ref|ZP_08978841.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
gi|353541231|gb|EHC10700.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
metallireducens DSM 15288]
Length = 274
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 25/229 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA A R + +LK D+V+E+ D+R+P SS +P LQ + K +++ LNK D
Sbjct: 2 SIQWFPGHMAKAKRLLLDQLKWVDVVVELGDARVPESSRNPLLQQLIKDKPKIVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE---------LKLKEVISREP 134
LA+P + W+ +A++A + V K++ +E + K V +R
Sbjct: 62 LADPQWTDIWLNELKKT-SPVLAVSATAGFGVGKIVPELERLMAGKQERMAAKGVRAR-- 118
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
++ MV+G+PN+GKS+LIN + A +A G PGVT+ +I +
Sbjct: 119 SIRAMVIGIPNIGKSSLINQLTGSA-----------KAKTGNKPGVTRGNQWIRIHDK-- 165
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+ ++DTPG+L P D E G KLA +G+I+D V+ +E ++++LL L
Sbjct: 166 VELMDTPGLLWPKFEDPEVGNKLAATGTIRDEVLNQEELSEWLLMQLKA 214
>gi|167750815|ref|ZP_02422942.1| hypothetical protein EUBSIR_01797 [Eubacterium siraeum DSM 15702]
gi|167656250|gb|EDS00380.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium siraeum
DSM 15702]
Length = 282
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 30/248 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHM R I+ LK+ D V E+ DSRIP SS +P + +K R+I LNK D
Sbjct: 6 NIQWFPGHMTKTKRQIEADLKLVDAVAEIVDSRIPESSRNPVISDITGSKPRIILLNKCD 65
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLE--LVELKLKEVISR 132
A+ + +W +++ + Q Y A+ RS +V+ LL L + K K ++ +
Sbjct: 66 YADEKVTAEWQKYYTA--QGYKAMICDCRSGKGVKAFTPNVKNLLSDLLAKRKAKGIVGQ 123
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
+L VMVVG+PNVGKS+ IN I K + V PGVT+ ++
Sbjct: 124 --SLRVMVVGIPNVGKSSFINRIS-----------KAGKTKVEDRPGVTR--GAQWVSLD 168
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL--NTRGTPLHW 250
+ +LDTPG+L P D + +KL +G+IKD V+ +A LL L N +G +
Sbjct: 169 KELELLDTPGILWPKFDDQQVAIKLGYTGAIKDDVMDVCELADSLLGYLWENYKGNVITR 228
Query: 251 RHLNNRTE 258
L+ TE
Sbjct: 229 YKLDENTE 236
>gi|432115360|gb|ELK36777.1| Mitochondrial GTPase 1 [Myotis davidii]
Length = 301
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 120/216 (55%), Gaps = 23/216 (10%)
Query: 39 IKHRLKISDLVIEVRDSRIPLSSA-HPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH- 96
++ LK+ D ++EV D+RI ++ +P Q L K + LNK DLA+ K +RH
Sbjct: 1 MQSSLKLVDCIVEVHDARISFAAGRNPLFQETLGIKPHLFVLNKMDLADLKEKQKIIRHL 60
Query: 97 ---------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVG 147
F +C +D + + + K+ EL+ + +MV+GVPNVG
Sbjct: 61 EREGLKNVIFTNCIKD-----ENIKQVIPKVTELIGNSYRYHRGENVEFCIMVIGVPNVG 115
Query: 148 KSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIYVLDTPGVLVP 206
KS+LINS+ + L K K VG PG+T+ + + +++ RP +++LDTPGVL P
Sbjct: 116 KSSLINSLRRQHL------RKGKATRVGSEPGITRAVMSKIQVSERPLMFLLDTPGVLAP 169
Query: 207 SIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
I +ETGLKLAL G++ D +VGEE +A YLL LN
Sbjct: 170 RIESVETGLKLALCGTVLDHLVGEETLADYLLYTLN 205
>gi|260494157|ref|ZP_05814288.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336401175|ref|ZP_08581947.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336418578|ref|ZP_08598852.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
gi|260198303|gb|EEW95819.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
3_1_33]
gi|336161532|gb|EGN64533.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
21_1A]
gi|336164515|gb|EGN67420.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
11_3_2]
Length = 289
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 29/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ ++ +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRV--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVACSLLRKMLQQG---RWESL 227
Query: 254 NNRTEVSQSETEN 266
R ++ + + ++
Sbjct: 228 KERYKLLEEDRDD 240
>gi|269123478|ref|YP_003306055.1| GTP-binding protein HSR1-like protein [Streptobacillus moniliformis
DSM 12112]
gi|268314804|gb|ACZ01178.1| GTP-binding protein HSR1-related protein [Streptobacillus
moniliformis DSM 12112]
Length = 298
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 79/351 (22%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I LKI DLVIE+ D+RIP+SS +P ++ K RV+ LNK DL
Sbjct: 5 INWYPGHMKKTKEMIVENLKIVDLVIEILDARIPISSKNPDIEYLAKNKLRVVILNKIDL 64
Query: 85 ANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
+ L +W ++F ++ ++AI+ + +L ++V K+K+ R+
Sbjct: 65 VDEAKLKEWEKYFIENNISHHFLAISVEKNKNFNELRKIVNKIYDEKLEKMKKKGLRKTV 124
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS IN +A VG PG T+ + + +
Sbjct: 125 VRAMIVGIPNVGKSKFINKFSN-----------KNKAKVGNKPGFTRGKQWITVDDKFEL 173
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
LDTPGVL P D LA++GSI+D ++ E ++ L+ ++ + ++N
Sbjct: 174 --LDTPGVLWPKFEDNMVSFNLAITGSIRDDILPLEDVSNRLIDIMKEQCI------IDN 225
Query: 256 RTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVED 315
+ YNL + E L+T N+E
Sbjct: 226 LI----------YSYNLDE-----------------ETLITKT-------------NIE- 244
Query: 316 ENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
FE+L++ L I + ++S++ L +R GKLG F+L+
Sbjct: 245 ----------IFELLEKRLGIYKNEKFSYELISRRLLKDYRIGKLGKFLLE 285
>gi|325680801|ref|ZP_08160339.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
gi|324107581|gb|EGC01859.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 8]
Length = 297
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ WFPGHM+ R + LK+ D V+E+ D+RIP SS +P ++ +K R++ LNK D
Sbjct: 7 VQWFPGHMSKTRRIMASNLKLVDAVVEITDARIPYSSRNPEIKKICGSKPRMVLLNKADS 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P+I + W+ ++ +A + S +V K +++ L E I + T +
Sbjct: 67 ADPDITSMWIEYYKKQGVPALATDCRSGRNVSKFYPMLKELLSEQIEKWDTRGMTGRPIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VG+PNVGKS+ IN + L++ V+++ PGVT+ +A +
Sbjct: 127 MMIVGIPNVGKSSFINRLAGAKLAK--VEDR---------PGVTR--GKQWVALDEGFEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LD PGVL P D G +LA +G++KD ++ E +A LL LN
Sbjct: 174 LDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTEYLACRLLEYLN 218
>gi|195036438|ref|XP_001989677.1| GH18661 [Drosophila grimshawi]
gi|193893873|gb|EDV92739.1| GH18661 [Drosophila grimshawi]
Length = 325
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 164/357 (45%), Gaps = 74/357 (20%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ DSRIP + + ++ K ++ LNK
Sbjct: 21 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDSRIPFAGRNSQFFETITGNGVKPHILVLNK 80
Query: 82 KDLANPNILNKWVRHFDSCK---QDYIAINAHSRSSVQKLLELVELKLKEVI-------S 131
DL ++ + + ++ + N + + +L+++ L K V +
Sbjct: 81 VDLLGKKQQRSVLKQLRAQQPELRNILFTNCKDQRN-HGVLDILPLASKLVAESSRFNRT 139
Query: 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIA 190
+ +M++GVPNVGKS++IN + + L +K A VG GVT+ + KI
Sbjct: 140 QSAEHNIMIIGVPNVGKSSIINVLRNVHL------KKRSAARVGAEAGVTRSVGERIKIQ 193
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW 250
+P +Y++DTPG+L PS+ D E G+KLAL G + D +VGE+ IA YL L+W
Sbjct: 194 EQPPVYMIDTPGILQPSVTDDEMGMKLALVGCLPDHIVGEDLIADYL----------LYW 243
Query: 251 RHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQR-ALHVSLSEF 309
+ + R + Q L N S V L QR + + ++
Sbjct: 244 LNRHRRLDYVQL------------LGLSSGPSDNISAV-----LAEFAQREGMFHRVKQY 286
Query: 310 DGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366
DG VE +L L +++F++ FRTG+LGP LD
Sbjct: 287 DGQVEMMTNL-------------------------LAAARRFISFFRTGQLGPINLD 318
>gi|403378827|ref|ZP_10920884.1| protein RbgA [Paenibacillus sp. JC66]
Length = 286
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 22/219 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +L I D+ IE+ D+RIPL+S +P + L K R+I LNK D
Sbjct: 2 TIQWFPGHMTRARRQIEAKLNIIDMAIELMDARIPLASRNPMIDDILQRKPRLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK--------LLELVELKLKEVISREPT 135
LA+ + +WV F + + +++ S + V++ L + +E ++++ + P
Sbjct: 62 LADAQVTARWVSFFQEQGIEALPVDSVSGTRVKEIVPACKALLADKIEAQIRKGMKPRP- 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ ++VG+PNVGKS LIN + K A G PGVT+ +I +
Sbjct: 121 IRALIVGIPNVGKSTLINRLA-----------GRKAAITGDRPGVTKGQQWIRIGG--EL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
+LDTPG+L P D + G++LA +G+IKD ++ ++ IA
Sbjct: 168 ELLDTPGILWPKFEDQQVGIRLAATGAIKDELLHQQDIA 206
>gi|423136942|ref|ZP_17124585.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371961009|gb|EHO78652.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 289
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 29/253 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
+ L+KW ++F +QD+ + ++A + +V+KL E +E KL + ++
Sbjct: 66 VSKQELDKWKKYFK--EQDFADEVVEMSAETGYNVKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ ++ +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAAVGNKPGFTRGKQWVRV--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA++G+I+D ++ E +A LL + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGINLAITGAIRDEILPIEDVACSLLRKMLQQG---RWESL 227
Query: 254 NNRTEVSQSETEN 266
R ++ + + ++
Sbjct: 228 KERYKLLEEDRDD 240
>gi|309805733|ref|ZP_07699773.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|309806753|ref|ZP_07700747.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|309807512|ref|ZP_07701469.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|312873986|ref|ZP_07734022.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|312875498|ref|ZP_07735501.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|325912835|ref|ZP_08175213.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|349611413|ref|ZP_08890649.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
gi|308164986|gb|EFO67229.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 09V1-c]
gi|308166868|gb|EFO69053.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 03V1-b]
gi|308169239|gb|EFO71300.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LactinV 01V1-a]
gi|311089009|gb|EFQ47450.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2053A-b]
gi|311090535|gb|EFQ48943.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
LEAF 2052A-d]
gi|325477828|gb|EGC80962.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus iners
UPII 60-B]
gi|348608735|gb|EGY58705.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus sp.
7_1_47FAA]
Length = 279
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 27/260 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHM A ++ +L + D++IEV D+R+P+SS +P + ++ K +I LNK
Sbjct: 2 ANIQWYPGHMNKAKNQLEDKLDLIDVIIEVLDARLPMSSKNPMISKLIANKAHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI-------SREPT 135
DLA+ WV+ F + ++A +++ L++L+++ K+ + ++EP
Sbjct: 62 DLADAIKTKAWVKFFQKQGILVLPMDAQHSNNMSGLIKLIKIATKDKVDKIIAKGAKEPV 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN R + T VG PGVT+ K +I
Sbjct: 122 IKVAIAGIPNCGKSTIIN--------RLVGRNAT---IVGDKPGVTRGQNWLK--TDTNI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D GLKLA G+IKDSV + ++ ++L L ++L+
Sbjct: 169 QILDTPGILWPKFDDRNIGLKLAACGAIKDSVFHADDVSIFVLKYLRE-------QYLDL 221
Query: 256 RTEVSQSETENKHEYNLKDL 275
+ ++ E + N DL
Sbjct: 222 LVDFCKTSAEKIEKINDIDL 241
>gi|198418040|ref|XP_002125861.1| PREDICTED: similar to Mitochondrial GTPase 1, mitochondrial
precursor (GTP-binding protein 7) [Ciona intestinalis]
Length = 362
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 159/360 (44%), Gaps = 77/360 (21%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+WFP HM ++ LK D +IE+ D+RIP+S +PGLQ LS+K ++ LNK DL
Sbjct: 41 HWFPRHMGKGLIKMRRVLKNVDCIIEIHDARIPISGRNPGLQQALSSKPYLLLLNKIDLV 100
Query: 86 NPNILNKWVRHFDSCKQDYIAIN------------AHSRSSVQKLL----ELVELKLKEV 129
K +H D+ + Y N SV +++ LV+ +
Sbjct: 101 Q---FTK--QHVDAIFEFYREKNVENVIFTELLSAGQCHPSVHRIIPACVNLVQKSHRHD 155
Query: 130 ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FK 188
+ + +MVVG+PNVGKS+LI ++ L R E VG PG T+ + +
Sbjct: 156 REGDMDINIMVVGIPNVGKSSLIKALRAGNLGRKGGPE------VGRNPGHTRAVMNRVQ 209
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPL 248
++ P++Y+LDTPG+ P I D+ G+KLAL ++ D V+G +A YLL LN
Sbjct: 210 VSSNPAVYLLDTPGIFEPHITDMHVGMKLALCNTVHDHVMGPSMVADYLLYTLNKHRDFT 269
Query: 249 HWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSE 308
+ ++ N + S T KH N ++ + TG + +HV + +
Sbjct: 270 YTKYFNLPGPIDCSLTLLKH-------------ISNETNQFQTRAVQTGTGK-VHVKIPD 315
Query: 309 FDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDV 368
FD + FL FR GKLG F+LDDV
Sbjct: 316 FD-----------------------------------QAASVFLKAFREGKLGNFLLDDV 340
>gi|210615858|ref|ZP_03290820.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
gi|210150061|gb|EEA81070.1| hypothetical protein CLONEX_03039 [Clostridium nexile DSM 1787]
Length = 283
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARVPISSRNPDIDELGKNKARLILLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE + R+ +
Sbjct: 62 LAEDKQNDAWAEYFKKKGFAVVKVNSKKGGGIKSIQGVIQEACKEKMERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS INS+ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINSLAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSIKD ++ E +A L+ +
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELAAELIQFM 213
>gi|73662832|ref|YP_301613.1| ribosomal biogenesis GTPase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495347|dbj|BAE18668.1| putative GTPase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 286
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 23/293 (7%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIQQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
AN L KW +F +AI+A ++++ + KE +E +
Sbjct: 63 ANLKELEKWESYFKEKGFYPVAIDAKHGKGLKQVEQTAIKATKEKFEKEKQKGLTPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + ++++ G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLANKSIAK-----------TGNTPGVTKQQQWIKVGQ--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D G KL+++G+IKDS+V + +A Y L + +H +
Sbjct: 170 LDTPGILWPKFEDQLVGKKLSVTGAIKDSIVHLDEVAIYALDFMKAHDYDGLIQHY--KI 227
Query: 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFD 310
+VS+ E EN ++ R + N D + DL+ R + FD
Sbjct: 228 DVSK-EAENIEWFDAIGRRRGLLRRGNEIDYEAVIDLIIHEVRNAKIGTYTFD 279
>gi|15675137|ref|NP_269311.1| ribosomal biogenesis GTPase [Streptococcus pyogenes SF370]
gi|71910695|ref|YP_282245.1| ribosomal biogenesis GTPase [Streptococcus pyogenes MGAS5005]
gi|410680553|ref|YP_006932955.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
gi|13622297|gb|AAK34032.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853477|gb|AAZ51500.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
gi|395453930|dbj|BAM30269.1| ribosomal biogenesis GTPase [Streptococcus pyogenes M1 476]
gi|409693142|gb|AFV38002.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
pyogenes A20]
Length = 282
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|291530691|emb|CBK96276.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum 70/3]
gi|291557800|emb|CBL34917.1| Ras superfamily GTP-binding protein YlqF [Eubacterium siraeum
V10Sc8a]
Length = 282
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 30/248 (12%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHM R I+ LK+ D V E+ DSRIP SS +P + +K R+I LNK D
Sbjct: 6 NIQWFPGHMTKTKRQIEADLKLVDAVAEIVDSRIPESSRNPVISDITGSKPRIILLNKCD 65
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRS---------SVQKLLE--LVELKLKEVISR 132
A+ + +W +++ + Q Y A+ RS +V+ LL L + K K ++ +
Sbjct: 66 YADEKVTAEWQKYYTA--QGYKAMICDCRSGKGVKAFTPNVKNLLSDLLAKRKAKGIVGQ 123
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
+L VMVVG+PNVGKS+ IN I K + V PGVT+ ++
Sbjct: 124 --SLRVMVVGIPNVGKSSFINRIS-----------KAGKTKVEDRPGVTR--GAQWVSLD 168
Query: 193 PSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL--NTRGTPLHW 250
+ +LDTPG+L P D + +KL +G+IKD V+ +A LL L N +G +
Sbjct: 169 KELELLDTPGILWPKFDDQQVAIKLGYTGAIKDDVMDVCELADNLLGYLWENYKGNVIAR 228
Query: 251 RHLNNRTE 258
L+ TE
Sbjct: 229 YKLDENTE 236
>gi|342163784|ref|YP_004768423.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
gi|341933666|gb|AEL10563.1| GTPase YlqF [Streptococcus pseudopneumoniae IS7493]
Length = 283
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W ++F+S + IN+ + +V+ + + + + + I+R+ T
Sbjct: 62 DLADPVMTKEWRQYFESQGIQTLTINSKEQVTVKVVTDAAKKLMADKIARQKGRGIQIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PG+T+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGITKGQQWLKTNK--DL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D LKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDQLL 201
>gi|51892611|ref|YP_075302.1| hypothetical protein STH1473 [Symbiobacterium thermophilum IAM
14863]
gi|51856300|dbj|BAD40458.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 286
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ + D+V+E+ D+R PL+S +P L ++ K +V+ LNK DL
Sbjct: 2 IQWFPGHMAKARRILQENAPLVDVVLEIVDARCPLASRNPDLMALVAHKPQVLILNKADL 61
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI------SREP-TLL 137
A+P WV + + +A++A + +++L + V+ R+P
Sbjct: 62 ADPAATRLWVERLNEPGRPAVALDAVRGTGAREVLAAIRRAFAPVLRAWTAKGRKPRPAR 121
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
VM VG+PNVGKS+ IN + +RA VG PGVT+ +I + +
Sbjct: 122 VMAVGIPNVGKSSAINRLV-----------GARRAPVGDKPGVTRGKQWIRIGK--DVEL 168
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LD PG+LVP D GL LA +G+IKD V + +A +LL
Sbjct: 169 LDMPGILVPKFEDQRDGLLLAATGAIKDEVFDQREVANHLL 209
>gi|195572996|ref|XP_002104481.1| GD18426 [Drosophila simulans]
gi|194200408|gb|EDX13984.1| GD18426 [Drosophila simulans]
Length = 323
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 160/363 (44%), Gaps = 84/363 (23%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDL----ANPNILNKWVRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL +L + R F +CK + V +L L + E
Sbjct: 80 VDLLGAKQQKGVLQQLRRQQPELQHILFTNCKD-------QRNNGVLDILPLATRLVSES 132
Query: 130 ISREPTLL----VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
T +M++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRTQAAEHNLMIIGVPNVGKSSVINVLRNVHL------KKKSAARVGAEAGITRSVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LNT
Sbjct: 187 ERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNTH 246
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
+Y+ ++ P + D++ + + H
Sbjct: 247 -----------------------RKYDYVEMLKLSSGP--SDDISAVLAEYAHREELFH- 280
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFI 364
+ ++DG VE +L L ++KF+ FR+G+LG
Sbjct: 281 KVKQYDGRVEVMTNL-------------------------LAAARKFIHFFRSGQLGHIN 315
Query: 365 LDD 367
LD+
Sbjct: 316 LDE 318
>gi|116629568|ref|YP_814740.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|238853073|ref|ZP_04643465.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282852053|ref|ZP_06261411.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311110788|ref|ZP_07712185.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|420147282|ref|ZP_14654558.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
gi|116095150|gb|ABJ60302.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus gasseri
ATCC 33323]
gi|238834321|gb|EEQ26566.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
202-4]
gi|282556813|gb|EFB62417.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
224-1]
gi|311065942|gb|EFQ46282.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
MV-22]
gi|398401283|gb|EJN54785.1| Ribosome biogenesis GTPase A [Lactobacillus gasseri CECT 5714]
Length = 279
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 24/251 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIILNKS 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL----KLKEVISR---EPT 135
DLA+P KW R+F I+++A +++ L ++++L K +++I++ P
Sbjct: 62 DLADPIQTKKWTRYFQDEGNFVISMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D E G KLA G+IK V + +A +++ L + + L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPDDVALFVIEFLKQN----YKKDLTK 224
Query: 256 RTEVSQSETEN 266
+ + E EN
Sbjct: 225 FAQATNEELEN 235
>gi|195331143|ref|XP_002032262.1| GM23617 [Drosophila sechellia]
gi|194121205|gb|EDW43248.1| GM23617 [Drosophila sechellia]
Length = 323
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 159/363 (43%), Gaps = 84/363 (23%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDLANPNILNKWVRH------------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL ++H F +CK + V +L L + E
Sbjct: 80 VDLLGAKQQKGVLQHLRRQQPELQHILFTNCKD-------QRNNGVLDILPLATRLVGES 132
Query: 130 ISREPTLL----VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
T +M++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRTQAAEHNLMIIGVPNVGKSSVINVLRNVHL------KKKSAARVGAEAGITRSVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LNT
Sbjct: 187 ERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNTH 246
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
+Y+ ++ P + D++ + + H
Sbjct: 247 -----------------------RKYDYVEMLKLSSGP--SDDISAVLAEYAHREELFH- 280
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFI 364
+ ++DG VE +L L ++KF+ FR+G+LG
Sbjct: 281 KVKQYDGRVEVMTNL-------------------------LAAARKFIHFFRSGQLGHIN 315
Query: 365 LDD 367
LD+
Sbjct: 316 LDE 318
>gi|154503289|ref|ZP_02040349.1| hypothetical protein RUMGNA_01113 [Ruminococcus gnavus ATCC 29149]
gi|153795956|gb|EDN78376.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus gnavus
ATCC 29149]
Length = 288
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARLPVSSRNPDIDELGKNKARLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEEKWNDAWAEYFKKKGYSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSIKD ++ E + L+ L
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELGGELIRFL 213
>gi|300361595|ref|ZP_07057772.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
gi|300354214|gb|EFJ70085.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus gasseri
JV-V03]
Length = 279
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 24/251 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIILNKS 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL----KLKEVISR---EPT 135
DLA+P KW R+F I+++A +++ L ++++L K +++I++ P
Sbjct: 62 DLADPIQTKKWTRYFQDEGNFVISMDAQHNTNMTSLFKIIKLAGKKKTEKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D E G KLA G+IK V + +A +++ L + + L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADVFHPDDVALFVIEFLKQN----YQKDLAK 224
Query: 256 RTEVSQSETEN 266
+ + E EN
Sbjct: 225 FAQATSEELEN 235
>gi|331002665|ref|ZP_08326180.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330407078|gb|EGG86582.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 280
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A RA+ +K+ D++IE+ D+R P ++ +P + +AK R+I LNK DL
Sbjct: 3 IQWYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEIMELGAAKSRIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+ N N+W ++ + + +++ ++ V L++ +E KE R+ +
Sbjct: 63 ADENANNRWANYYKEQGYECMFMDSRKKNGVNALIKAIENVSKEKRERDAKRGIKNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV G+PNVGKS LINS+ A+ A G PGVT+ K+ + + +
Sbjct: 123 AMVAGIPNVGKSTLINSVSGRAM-----------AKTGNKPGVTKGNQWIKL--KGQVEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D G +A GSI D ++ + L+ + P L R
Sbjct: 170 LDTPGILWPKFEDENVGEMIAFIGSINDMIIDIRELGLELIKWF-IKNKP---EVLKERF 225
Query: 258 EVSQSETEN 266
E+ +++ EN
Sbjct: 226 EIRETDNEN 234
>gi|227499924|ref|ZP_03930017.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
gi|227218033|gb|EEI83306.1| GTP-binding protein [Anaerococcus tetradius ATCC 35098]
Length = 280
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 21/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM I LK+ D+V+E+ DSRIP+SS +P + ++ K R+I +NK D
Sbjct: 4 NINWFPGHMKKTKEIIIDNLKLVDVVLEIIDSRIPISSRNPMIDEIIADKPRIIIMNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
L++P + KW+ F I +N+ V ++ + ++ LK+ + P +
Sbjct: 64 LSDPEVNKKWIAKFKEEGIPAILMNSKENVPVDRIYKEAKILLKDKFKKNEEKNIDNPLI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VGVPN GKS IN + K K A VG PG+TQ K +I
Sbjct: 124 RMMIVGVPNSGKSTFINKLS-----------KKKGAKVGNRPGITQSKQWIKAGS--NIQ 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P + + GL L+ + +I+D V+ E + L
Sbjct: 171 LLDTPGILWPKFEE-KIGLHLSFTNAIRDEVLNIEDLTLKFL 211
>gi|345859699|ref|ZP_08812033.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
gi|344327156|gb|EGW38600.1| ribosome biogenesis GTPase A [Desulfosporosinus sp. OT]
Length = 274
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 21/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +++ D+V+E+ D+RIP+SS +P L L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARRLLIEQIRWVDVVLELADARIPISSRNPMLDKLLGNKPRILLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL-ELVELKLKEVIS------REPTL 136
LA+ N +KW+ + + A++A + + V++++ EL + L + I R +
Sbjct: 62 LADTNWTSKWLTQLRASSPAF-AVSATTGTGVKQIVPELERMVLAKQIRQANKGIRPQMI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+VG+PN+GKS+LIN + A +A VG PGVT+ +I R +
Sbjct: 121 KVMIVGIPNIGKSSLINQLTGGA-----------QAKVGNKPGVTRGNQWVRIHER--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P E G KLA G+IKD V+ E ++ +++ L
Sbjct: 168 LLDTPGMLWPKFEVPEVGQKLAALGAIKDDVLDIEELSLWIIDWL 212
>gi|452995936|emb|CCQ92337.1| ribosome biogenesis GTPase A [Clostridium ultunense Esp]
Length = 286
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ RLKI D+V E+ D+RIP +S +P + + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVEERLKIIDIVFELLDARIPSASQNPMMDEIVGHKPRIILLNKYD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
L++P + +WV F+ + I++ S ++ + +L E + V + +
Sbjct: 62 LSDPAVTKEWVSFFERKGGHALPIDSLSGRGLETIPKLAESLTQSVQDKRQAKGMKGRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS+LIN + + ++ A G PGVT+ K ++
Sbjct: 122 RAMIVGIPNVGKSSLINRLAKRSV-----------AQTGDRPGVTKSQQWIKTGK--NLD 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P + G LA +G+I+D ++ +A + L ++ R
Sbjct: 169 LLDTPGILWPKFGEERVGYLLAATGAIRDEILDIYDVALFTLKIMKER 216
>gi|408375022|ref|ZP_11172700.1| GTPase YlqF [Alcanivorax hongdengensis A-11-3]
gi|407765091|gb|EKF73550.1| GTPase YlqF [Alcanivorax hongdengensis A-11-3]
Length = 312
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INW+PGHM ATR I+ L DL+IEV D+R+P SSA+P ++ + K + L+K D
Sbjct: 2 SINWYPGHMNKATREIRDILPKVDLIIEVVDARLPYSSANPVIENFRADKPCLKLLSKSD 61
Query: 84 LANPNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVG 142
LA+P I +W+ H K +AI H ++KL + + + I R T+ ++ G
Sbjct: 62 LADPAITRQWLEHLQQDPKVRALAITTHKPEPIRKLADTCRQMVNKKIDRATTITALITG 121
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKS LIN++ + A G P VTQ ++ + ++D+PG
Sbjct: 122 IPNVGKSTLINTL-----------AGRQVAKAGNEPAVTQRQQRIELGD--GLILIDSPG 168
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+L P I + +G +LALSG+IK + + E+ +A +
Sbjct: 169 ILWPKIENRNSGYRLALSGAIKATAMQEDDVALF 202
>gi|336432668|ref|ZP_08612499.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336017950|gb|EGN47703.1| ribosome biogenesis GTP-binding protein YlqF [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 264
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+ W+PGHM A R ++ +K+ DLVIE+ D+R+P+SS +P + K R+I LNK D
Sbjct: 2 HFQWYPGHMTKAKRMMQENIKLIDLVIELVDARLPVSSRNPDIDELGKNKARLILLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA + W +F + +N+ ++ + +++ KE I R+ +
Sbjct: 62 LAEEKWNDAWAEYFKKKGYSVVKVNSKRGGGIKSIQGVIQEACKEKIERDRKRGILNRPV 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MVVG+PNVGKS IN++ A A G PGVT+ ++ ++
Sbjct: 122 RAMVVGIPNVGKSTFINALAGKAC-----------AKTGNKPGVTKGKQWIRL--NKNVE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA GSIKD ++ E + L+ L
Sbjct: 169 LLDTPGILWPKFEDQTVGLRLAFIGSIKDEILNTEELGGELIRFL 213
>gi|422758930|ref|ZP_16812692.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411765|gb|EFY02673.1| ribosomal biogenesis GTPase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 282
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ +W ++ S +AIN+ +S+V+K+ E + + + I R + T
Sbjct: 62 DLADATRTKEWKAYYKSQGIKTLAINSKEQSTVKKVTEAAKELMADKIQRLRNRGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRL-----------AGKKIAVVGNKPGVTKGQQWLK--SNKEL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D GLKLAL+G+IK+ ++ + + + L T
Sbjct: 169 EILDTPGILWPKFEDELVGLKLALTGAIKNQLLPMDEVTIFGLNYFKT 216
>gi|394993944|ref|ZP_10386683.1| GTPase YlqF [Bacillus sp. 916]
gi|429505157|ref|YP_007186341.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452855551|ref|YP_007497234.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|393805268|gb|EJD66648.1| GTPase YlqF [Bacillus sp. 916]
gi|429486747|gb|AFZ90671.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452079811|emb|CCP21569.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 282
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVIS---REPTL 136
A+ + +W HF ++IN+ + + +++ EL++ K ++ + R +
Sbjct: 62 KADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKD+++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFL 213
>gi|383480029|ref|YP_005388923.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|383493945|ref|YP_005411621.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
gi|378928019|gb|AFC66225.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS15252]
gi|378929673|gb|AFC68090.1| 50S ribosomal biogenesis GTPase protein RbgA [Streptococcus
pyogenes MGAS1882]
Length = 282
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENVKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ +S+V+K+ E + + + I R + TL
Sbjct: 64 ADATRTKEWKAYYESQGIKTLAINSKEQSTVKKVTEASKELMADKIQRLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|147678051|ref|YP_001212266.1| GTPase [Pelotomaculum thermopropionicum SI]
gi|146274148|dbj|BAF59897.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
Length = 284
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I+W+PGHMA A R +K L+++D+VIEV D+RIP SS +P + +K R+I LNK D
Sbjct: 2 DIHWYPGHMAKARRQVKEDLRLADVVIEVLDARIPASSRNPDIGKIAGSKPRLIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTL 136
LA+P + +W+ +F + +++ S V+++ LVE L R
Sbjct: 62 LADPVLTGRWMDYFKKAGYEAADVDSVSGRGVREIPGLVEQLAAPKIASLANAGRRPRAA 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV+G+PNVGKS LIN + + R V+ G PGVT+ ++ ++
Sbjct: 122 RCMVLGIPNVGKSFLINKL----VGRRVVK-------TGSSPGVTRGKQWVRLTG--NLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++DTPG+L P + D T LA++G++K+ V E++A LL L
Sbjct: 169 LMDTPGILRPRLDDPVTAFHLAVTGAVKEEVFNLEKVAGRLLKWL 213
>gi|154686021|ref|YP_001421182.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens FZB42]
gi|384265188|ref|YP_005420895.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264731|ref|ZP_10042818.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387898184|ref|YP_006328480.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|154351872|gb|ABS73951.1| YlqF [Bacillus amyloliquefaciens FZB42]
gi|380498541|emb|CCG49579.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149227|gb|EIF13164.1| ribosomal biogenesis GTPase [Bacillus sp. 5B6]
gi|387172294|gb|AFJ61755.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVIS---REPTL 136
A+ + +W HF ++IN+ + + +++ EL++ K ++ + R +
Sbjct: 62 KADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKD+++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFL 213
>gi|375362249|ref|YP_005130288.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731725|ref|ZP_16170848.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347024|ref|YP_007445655.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
gi|371568243|emb|CCF05093.1| GTP-binding protein engA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073938|gb|EKE46928.1| GTPase YlqF [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850782|gb|AGF27774.1| GTPase YlqF [Bacillus amyloliquefaciens IT-45]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVIS---REPTL 136
A+ + +W HF ++IN+ + + +++ EL++ K ++ + R +
Sbjct: 62 KADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGVRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKD+++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFL 213
>gi|126654071|ref|ZP_01725897.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
gi|126589451|gb|EAZ83598.1| ribosomal biogenesis GTPase [Bacillus sp. B14905]
Length = 281
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 20/219 (9%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA A R + +LK+ D++ E+ D+R+PLSS +P + ++ K R++ LNK D+A+
Sbjct: 1 MAKARREVTEKLKLVDIIFELIDARLPLSSRNPMIDEVINQKPRLLILNKADMADEQETR 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TLLVMVVGVP 144
KWV +F +AIN+ +Q++ + + LKE R +P + M+VG+P
Sbjct: 61 KWVDYFAQRGHKAVAINSLEGKGLQQVTKAAQEILKEKFDRMKAKGMKPRAIRAMIVGIP 120
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
NVGKS LIN + K A G PGVT+ K+ + +LDTPG+L
Sbjct: 121 NVGKSTLINRLA-----------KKNIAKTGNTPGVTKAQQWIKVGK--ELELLDTPGIL 167
Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
P D E G KLAL+G+IKD++ E +A Y L L+
Sbjct: 168 WPKFEDQEVGFKLALTGAIKDTITNMEDLAVYGLRFLSV 206
>gi|81428605|ref|YP_395605.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|78610247|emb|CAI55296.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A + IK RLK DL++E+ D+R+P SS +P +Q K ++ +NK D
Sbjct: 2 TIQWYPGHMAKAQKQIKERLKAVDLILEIVDARVPESSINPMIQELGQNKPILLIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
+A+P +W+ F IA++A ++ + + ++ + L E ++ R P +
Sbjct: 62 MADPRRTQQWIETFKKRGITAIALDAQHKAKLPMIEKVAQEILAEKLAKKRAKGIRNPVI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M VGVPNVGKS ++N + Q + A G PGVT++ K ++
Sbjct: 122 RAMCVGVPNVGKSTILNRLVQKNI-----------AVTGNRPGVTKNQQWLKAGQ--TLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPGVL P D G KLAL+G+I D++ + + + L
Sbjct: 169 LLDTPGVLWPKFEDPTIGSKLALTGAISDAIYHPDDVVIFAL 210
>gi|392948926|ref|ZP_10314526.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
pentosus KCA1]
gi|392435899|gb|EIW13823.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
pentosus KCA1]
Length = 284
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHMA A I+ L + D+V E+ D+RIP++S +P ++ + K ++ + KK
Sbjct: 2 ANIQWYPGHMAKAIHQIQDNLHLVDIVFELVDARIPVASRNPEIEKTIQQKPHLLIMTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRS----SVQKLLELVELKLKEVISREPT--- 135
DLA+ WV+++++ Q IA+++ SR+ Q +++ KL ++ +R T
Sbjct: 62 DLADSQATADWVKYYEAQGQVAIAVDSRSRTIGKQMTQAASDMLADKLAKIAARGITNRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + VG+PNVGKS L+N I K A VG PGVT+ K + + +
Sbjct: 122 IRAVCVGIPNVGKSTLLNHI-----------VNKKIAKVGDRPGVTKGQQWLKASKK--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D G KLA++G+IK+++ + +A + L
Sbjct: 169 ELLDTPGILWPKFEDQVVGTKLAVTGAIKENIYPNDDVALFAL 211
>gi|372271927|ref|ZP_09507975.1| GTPase YlqF [Marinobacterium stanieri S30]
Length = 307
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+INWFPGHM A + I + D+VIEV D+R+P+SS +P ++ AK + LNK+D
Sbjct: 3 SINWFPGHMHKARKEIAQVMDEIDVVIEVLDARLPMSSENPLVEQLRGAKPVLKLLNKQD 62
Query: 84 LANPNILNKWVRHFDSCKQDY-IAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVG 142
LA+P +W+ + ++ + +A++ + ++++ EL + + + +E + M++G
Sbjct: 63 LADPVRTQEWLDYLNARENTLAVALDTQQKKQIKQIPELCKKMVPARVRQERPVRAMIMG 122
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPG 202
+PNVGKS LIN++ L R K A VG P VT+ + + + + + DTPG
Sbjct: 123 IPNVGKSTLINAL----LGR-------KIAKVGNEPAVTKAQKRYSVHN--GMALSDTPG 169
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+L P I D ++G +LA SG+IKD+ + E +A Y L
Sbjct: 170 ILWPKIEDPDSGYRLAASGAIKDTAIEHEMVATYAAGFL 208
>gi|308173567|ref|YP_003920272.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|384159412|ref|YP_005541485.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|384164153|ref|YP_005545532.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|384168459|ref|YP_005549837.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
gi|307606431|emb|CBI42802.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens DSM 7]
gi|328553500|gb|AEB23992.1| GTPase YlqF [Bacillus amyloliquefaciens TA208]
gi|328911708|gb|AEB63304.1| ribosome biogenesis GTPase A [Bacillus amyloliquefaciens LL3]
gi|341827738|gb|AEK88989.1| ribosomal biogenesis GTPase [Bacillus amyloliquefaciens XH7]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKDKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVIS---REPTL 136
A+ + +W HF ++IN+ + + +++ EL++ K ++ + R +
Sbjct: 62 KADAAVTAQWKDHFQEQGIPSLSINSVNGQGLHQIVPSSKELLKDKFDKMKAKGIRPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPG+L P D GL+LA++G+IKD+++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAITGAIKDTIINLQDVAVFGLRFLE 214
>gi|392331467|ref|ZP_10276082.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
gi|391419146|gb|EIQ81958.1| ribosomal biogenesis GTPase [Streptococcus canis FSL Z3-227]
Length = 282
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W +++S +AIN+ + +V+K+ E + + + I R + TL
Sbjct: 64 ADAARTKEWKAYYESQGIKTLAINSKEQPTVKKVTEAAKELMADKIQRLRDRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKELEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD V+
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQVL 201
>gi|401412526|ref|XP_003885710.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
gi|325120130|emb|CBZ55684.1| hypothetical protein NCLIV_061080 [Neospora caninum Liverpool]
Length = 455
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 171/368 (46%), Gaps = 89/368 (24%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--SAKRRVIALNK 81
+I WFP HM AT AI+ LK D V+EVRD+R PL+S + L +L S +R++ LNK
Sbjct: 122 SITWFPPHMNRATVAIEKNLKHVDCVLEVRDARAPLTSGNNFLTDRLARSGVKRLVVLNK 181
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINA------HSRSSVQKLLELVELKLKEVISREPT 135
DL V D + + +A ++++ ++V+ + V + T
Sbjct: 182 ADL---------VHKRDGLRAQAVLEDAGLPCLLTCAPELKRVSKIVDFAFEHVRPKFKT 232
Query: 136 LLV--MVVGVPNVGKSALINSIHQIAL--SRFPVQE-------KTKRATVGPLPGVTQDI 184
+ V +++G+PN GKS+L+N++ ++A+ SR+ K RA G PG+T+++
Sbjct: 233 IGVWMLLMGLPNTGKSSLLNAMKRLAVNASRYGTSSNKLVEGVKRTRAKEGKAPGLTKEV 292
Query: 185 AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
F+I+++P ++ DTPG+++P + D E LKLA G I D GE +A Y+L
Sbjct: 293 GAFQISNKPRLFCYDTPGIMLPKMKDAEVNLKLAALGCIDDHRAGEMYVADYIL------ 346
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
Y+L +R +Y++ V G+ R
Sbjct: 347 -------------------------YHLNRMR----------CFSYVD--VIGLSRP--- 366
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHK--ASEARLMVSKKFLT-LFRTGKLG 361
ND++ + F+V+ ALK + L+ +F T LFR GK G
Sbjct: 367 -----------TNDIQEVAAHIFDVVY-ALKTNRRRVPPAPDLLSGCRFFTDLFRGGKFG 414
Query: 362 PFILDDVP 369
F LD +P
Sbjct: 415 FFCLDHLP 422
>gi|228475017|ref|ZP_04059745.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|418620398|ref|ZP_13183202.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
gi|228271002|gb|EEK12390.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis SK119]
gi|374822528|gb|EHR86548.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis VCU122]
Length = 294
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDY-IAINAHSRSSVQKL------LELVELKLKEVISREP-TL 136
+N N + KW HF + K Y +A++A +++ + + + ++ +P +
Sbjct: 63 SNLNEMQKW-EHFFTDKGFYPVAVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ ++
Sbjct: 122 RAMIVGIPNVGKSTLINKL-----------AKKNIAQTGNKPGVTKQQQWIKVGK--ALQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KL+L+G+IKDS+V + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLDEVAIYGLQFL 213
>gi|163791098|ref|ZP_02185518.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
gi|159873654|gb|EDP67738.1| hypothetical protein CAT7_11800 [Carnobacterium sp. AT7]
Length = 284
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 20/220 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + ++K+ D++ E+ D+R+PLSS +P L + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARRQVTEKIKLVDVIFELVDARLPLSSRNPILDEIIGEKPRIIILNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P KWV +F+ + I A +++++E + LK R +
Sbjct: 62 LADPVQTKKWVEYFNEQGIAAVPIVAQEGKGMKQVMEKAKEILKPKFDRRAAKGIKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M +G+PNVGKS LIN RF K A G PGVT+ A + +
Sbjct: 122 RAMSIGIPNVGKSTLIN--------RFI---KKNVAKTGNKPGVTK--AQQWLKLGKELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
+LDTPG+L P D G KLAL+G+IKD+++ + IA Y
Sbjct: 169 LLDTPGILWPKFEDPAIGQKLALTGAIKDTILQLDDIAMY 208
>gi|85815858|ref|NP_651094.2| CG17141 [Drosophila melanogaster]
gi|122064937|sp|Q9VCU5.2|MTG1_DROME RecName: Full=Mitochondrial GTPase 1; Flags: Precursor
gi|66771681|gb|AAY55152.1| IP12332p [Drosophila melanogaster]
gi|84796186|gb|AAF56060.2| CG17141 [Drosophila melanogaster]
Length = 323
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 161/363 (44%), Gaps = 84/363 (23%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDL----ANPNILNKWVRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL ++L + R F +CK + V +L L + E
Sbjct: 80 VDLLGAKQQKSVLQQLRRQQPELQHILFTNCKD-------QRNNGVLDILPLATRLVSES 132
Query: 130 ISREPTLL----VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
T +M++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRTQAAEHNLMIIGVPNVGKSSVINVLRNVHL------KKKSAARVGAEAGITRSVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LN+
Sbjct: 187 ERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLNSH 246
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
+Y+ ++ P + D++ + + H
Sbjct: 247 -----------------------RKYDYVEMLKLSSGP--SDDISAVLAEYAHREELFH- 280
Query: 305 SLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFI 364
+ ++DG VE +L L ++KF+ FR+G+LG
Sbjct: 281 KVKQYDGRVEVMTNL-------------------------LAAARKFIHFFRSGQLGHMN 315
Query: 365 LDD 367
LD+
Sbjct: 316 LDE 318
>gi|452984300|gb|EME84057.1| hypothetical protein MYCFIDRAFT_162912 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 33/235 (14%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+++ GH AA ++ L DL++E RD RIP++S +P + L+ K R+I KKDL
Sbjct: 19 SYYLGHHAAGLAKMRTMLSQIDLIVECRDYRIPMTSRNPMFEDSLAGKERMIVYTKKDLG 78
Query: 86 NP---------NILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
+ ++ KW D K + N R V+++L+ + KE+ + +L
Sbjct: 79 SSVIKEDKKREQMIRKW---HDPSK--VVFSNHKDRKDVRRILDYI----KEIAAARGSL 129
Query: 137 L---VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKI--- 189
+MVVG+PNVGKS+L+N++ + + R V A G PG+T+ I G KI
Sbjct: 130 TGSHLMVVGMPNVGKSSLLNALRREGVGRGKV------AHTGAQPGITRKIGTGVKIVLP 183
Query: 190 --AHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++Y+LDTPGV +P +PD + LKLAL GS+KD+VV +A YLL ++N
Sbjct: 184 DDTGSGAVYLLDTPGVFMPYVPDADAMLKLALCGSVKDTVVPALNLADYLLFLVN 238
>gi|428296853|ref|YP_007135159.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
gi|428233397|gb|AFY99186.1| Ras superfamily GTP-binding protein YlqF [Calothrix sp. PCC 6303]
Length = 293
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 123/236 (52%), Gaps = 24/236 (10%)
Query: 16 MGFTKGG--GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAK 73
MGFT+ I W+PGH+A A R +K +LK+ D+V+EVRD+RIPL++ HP L + K
Sbjct: 1 MGFTRNYKLNTIQWYPGHIAKAERKLKEQLKLVDVVLEVRDARIPLATQHPQLNEWIGTK 60
Query: 74 RRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL--------LELVELK 125
+RV+ +NK D+ P I N W+ F S + N+ + + L +EL + +
Sbjct: 61 KRVLVINKVDMVTPAIRNVWIDWFKSQGETPYFTNSQQGNGIDALGKAAQAAGVELNQRR 120
Query: 126 LKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
+ P V V+G PNVGKSALIN L + V E R PGVT+ +
Sbjct: 121 HNRGMLSRPVRAV-VIGFPNVGKSALINR-----LLKKRVVESANR------PGVTRSLR 168
Query: 186 GFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+I+ + I +LD PGV+ + D E LKLA+ I D+ + +A + L
Sbjct: 169 WVRISDQ--IELLDAPGVIPLKLEDQEAALKLAICDDIGDASYDNQLVASAFIDTL 222
>gi|311068126|ref|YP_003973049.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|419823894|ref|ZP_14347427.1| GTPase YlqF [Bacillus atrophaeus C89]
gi|310868643|gb|ADP32118.1| ribosomal biogenesis GTPase [Bacillus atrophaeus 1942]
gi|388471931|gb|EIM08721.1| GTPase YlqF [Bacillus atrophaeus C89]
Length = 281
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEEILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
A+ + +W HF+ ++I++ + + +++ + L+E I + +
Sbjct: 62 KADAAVTKQWKEHFEKQGIPSLSIDSVNGQGLNQIVPSSKELLQEKIDKRKAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITISQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAITGAIKDSIINLQDVAVFGLRFL 213
>gi|346314321|ref|ZP_08855842.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906679|gb|EGX76403.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 288
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ +L + D+VIE+RD+RIP +S +P ++ K R+I L+KKD
Sbjct: 8 IQWFPGHMTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDK 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ W + +A++ + +++E L ++ I R +
Sbjct: 68 ADAAATKLWCSALQNETTRVVALDILKENITARIVEESRLLMQAKIERMKRRGIRPRAIR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVGVPNVGKS IN I K K A G PGVT+ + K+ ++ +
Sbjct: 128 AMVVGVPNVGKSTFINRIS-----------KKKVAVTGDRPGVTRALQWSKVNQ--NLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D G+ LA++G+I+D ++ E IA + + L
Sbjct: 175 LDTPGVLWPKFEDETVGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|422327403|ref|ZP_16408430.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
gi|371663243|gb|EHO28433.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 6_1_45]
Length = 288
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ +L + D+VIE+RD+RIP +S +P ++ K R+I L+KKD
Sbjct: 8 IQWFPGHMTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDK 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ W + +A++ + + +++E L ++ I R T+
Sbjct: 68 ADAAATKLWCSALQNETTRVVALDILKENIIARIVEESRLLMQAKIERMKRRGIRPRTIR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVGVPNVGKS IN I K K A G PGVT+ + K+ ++ +
Sbjct: 128 AMVVGVPNVGKSTFINRIS-----------KKKVAVTGDRPGVTRALQWSKVNQ--NLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL D G+ LA++G+I+D ++ E IA + + L
Sbjct: 175 LDTPGVLWSKFEDETVGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|452843898|gb|EME45833.1| hypothetical protein DOTSEDRAFT_88068 [Dothistroma septosporum
NZE10]
Length = 344
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 125/228 (54%), Gaps = 18/228 (7%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+++ GH AA ++ L DL+IE RD RIPL+S +P + L+ + R+I KKDL
Sbjct: 19 SYYLGHHAAGLSKMRTMLSQIDLIIECRDYRIPLASRNPMFEESLAGRERMIVYTKKDLG 78
Query: 86 NPNILNKWVRHFDSCK----QDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVV 141
+ + + RH + K I + R V+++L+L++ I +MVV
Sbjct: 79 STGGVEEQKRHENIRKWHTPTKVIFSDHRDRKDVRRILDLIK-DANNTIGGLTGSHLMVV 137
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAH------RPS 194
G+PNVGKS+L+N++ + ++ K K A G PGVT+ I G KI
Sbjct: 138 GMPNVGKSSLLNALRREGVN------KGKAAHTGAQPGVTRKIGTGVKIVSADEETGSGG 191
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+Y+LDTPGV +P +PD + LKLAL GS+KD+VV +A YLL +N
Sbjct: 192 VYLLDTPGVFMPYVPDADAMLKLALCGSVKDTVVPPFNLADYLLFHIN 239
>gi|289450641|ref|YP_003475452.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289185188|gb|ADC91613.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 280
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 21/226 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
+NW+PGHM A R IK +LK+ DLVIE+ D+RIP SS +P L L K R++ L+KK
Sbjct: 2 AEVNWYPGHMTKAMRDIKAKLKLVDLVIELADARIPASSRNPELNKLLLNKPRLLVLSKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSV----QKLLELVELKLKEVISREPT--- 135
DLA+P +W+ + + A N + + QK ELV KL+ + +
Sbjct: 62 DLADPTWTERWLNKYQTESLAAAAFNLATIKGMNDLAQKCRELVADKLRRAEDKGRSGRP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ MV+G+PN GKS LINS+ K G PGVT+ + + +
Sbjct: 122 VRAMVLGIPNTGKSTLINSLA-----------GRKAVVTGDRPGVTRALQWVRTG---DL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++D PGVL P I L LA +G++KD V E IA ++ L
Sbjct: 168 ELMDVPGVLWPKITSAHAQLVLAATGAVKDQVFDVEDIAARMIECL 213
>gi|291519513|emb|CBK74734.1| ribosome biogenesis GTP-binding protein YlqF [Butyrivibrio
fibrisolvens 16/4]
Length = 259
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 32/246 (13%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHM A R ++ +K+ DLVIEV D+R P+SS +P + + K R+I LNK DLA+
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDLVIEVIDARCPVSSRNPDINGLANGKLRLILLNKSDLAD 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-----------REPT 135
+ KW +F S Q + + SR +K ++ V+ L EV + +
Sbjct: 65 KGVNQKWKEYFKS--QGFYCVELDSRD--RKNMKGVQATLDEVCAAKFERDRKRGIKNRP 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ MVVG+PNVGKS INS A+ A G PGVT+ K+ S+
Sbjct: 121 VRAMVVGIPNVGKSTFINSFAGRAV-----------AKTGNKPGVTKGKQWIKL--NKSV 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D GL LA GSI D+++ +A L L + LN
Sbjct: 168 ELLDTPGILWPKFEDNTVGLHLAFIGSINDAIIETRELALELADFLKANYPGI----LNK 223
Query: 256 RTEVSQ 261
R +V++
Sbjct: 224 RYDVNE 229
>gi|116617875|ref|YP_818246.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381336352|ref|YP_005174127.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116096722|gb|ABJ61873.1| Ras superfamily GTP-binding protein YlqF [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|356644318|gb|AET30161.1| GTP-binding protein YlqF [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 284
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 22/222 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+V E+ DSRIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVVFELVDSRIPESSRNPEVDKLIGNKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELK----LKEVISREPTL 136
A+P+ W +HF++ + ++ + Q + + VE K L + I +P +
Sbjct: 65 ADPDQTRAWKKHFEAQGYTVLVLDTRDPRTPQLVTKAARRAVEAKKAAQLAKGIQDQP-I 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+ GVPNVGKS L+N H + + P ++ PGVT+ IA K + +
Sbjct: 124 RAMISGVPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKIAWLKTPTK--LE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LD+PGVL P D G+KLAL+G++KD++ ++ A +L+
Sbjct: 171 LLDSPGVLWPKFEDQNIGMKLALTGAVKDTIFAKDDAALFLI 212
>gi|339640338|ref|ZP_08661782.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339453607|gb|EGP66222.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
oral taxon 056 str. F0418]
Length = 283
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+P + +W +F+ ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADPVRIKEWQGYFEIQGIPTLSINSKEQSAVKKVTDAAKKLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|194910747|ref|XP_001982222.1| GG12486 [Drosophila erecta]
gi|190656860|gb|EDV54092.1| GG12486 [Drosophila erecta]
Length = 323
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 163/367 (44%), Gaps = 92/367 (25%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDLANP----NILNKWVRH--------FDSCKQDYIAINAHSRSSVQKLLELVELKLKEV 129
DL ++L + R F +CK V +L L + E
Sbjct: 80 VDLLGAKQQRSVLQQLRRQQPELQHILFTNCKD-------QRNHGVLDILPLATRLVGES 132
Query: 130 ISREPTLL----VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185
T +M++GVPNVGKS++IN + + L +K A VG G+T+ +
Sbjct: 133 SRFNRTQAAEHNLMIIGVPNVGKSSVINVLRNVHL------KKRSAARVGAEAGITRSVG 186
Query: 186 G-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LN
Sbjct: 187 ERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLYWLN-- 244
Query: 245 GTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDV----TYIEDLVTGVQR 300
+ K+EY ++ L+ N S V + E+L V+
Sbjct: 245 -------------------SHRKYEY-VEKLKLSSGPSDNISAVLAEYAHREELFHKVK- 283
Query: 301 ALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKL 360
++DG VE +L L ++KF+ FR+G+L
Sbjct: 284 -------QYDGRVEVMTNL-------------------------LAAARKFIHFFRSGQL 311
Query: 361 GPFILDD 367
G LD+
Sbjct: 312 GHINLDE 318
>gi|402836326|ref|ZP_10884866.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
gi|402271422|gb|EJU20666.1| ribosome biogenesis GTP-binding protein YlqF [Mogibacterium sp.
CM50]
Length = 295
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 18/222 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ LK DLV+E+ DSRIPLSS +P ++ ++ K+RV+ L K D
Sbjct: 4 NINWYPGHMKKTRELIQENLKTVDLVVEIVDSRIPLSSRNPIIEELVAGKKRVVILGKFD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT----LLVM 139
LA+ ++ +W + +++ + +++ +++ K ++ RE L +M
Sbjct: 64 LADESVTMEWKAFLGRNGIIALPVDSRNGDNIKAFYTILD-KYQQERDRERALKRPLRMM 122
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
+VGVPNVGKS+ IN + + R K A G PGVT+ +A+ + +LD
Sbjct: 123 IVGVPNVGKSSFINRL----IGR-------KSAKTGDRPGVTKGKQWVTLAN--GMQLLD 169
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P + GL LA GSIKD ++ + +A LL VL
Sbjct: 170 TPGILWPKFEEPGVGLNLAFCGSIKDEILNVQDLAFELLKVL 211
>gi|427405689|ref|ZP_18895894.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
gi|425708530|gb|EKU71569.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
F0473]
Length = 302
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 24/228 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHM A R +K LK+ D+V+E+ D+RIP+SSA+P L+ ++ + R++ LNK DL
Sbjct: 12 LQWYPGHMRKAERLVKENLKLVDMVVELLDARIPMSSANPVLREIVAGRPRLVVLNKSDL 71
Query: 85 ANPNILNKWVRHFDSCKQDYIA--INAHSRSSVQKLLELVEL-------KLKEVISREPT 135
A P WV++F S QD +A ++A +++L++ ++ KL + ++
Sbjct: 72 AEPTATRAWVQYFAS--QDIVAVPVDAVKGRGIKELVQEIQRLAVPRTEKLAKHGAKPRA 129
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
M++G+PNVGKS+LIN + A R V PGVT+ +I + +
Sbjct: 130 ARCMILGIPNVGKSSLINRLSGGA-----------RTKVENRPGVTRAKQWIRIGAQ--L 176
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LD PG+L P D + L+LA +G+I D+V + LL L T
Sbjct: 177 ELLDMPGILWPKFEDAQAALRLAFTGAISDTVYDVGGVVLQLLRALRT 224
>gi|417907113|ref|ZP_12550889.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
gi|341596744|gb|EGS39335.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
capitis VCU116]
Length = 288
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA-HSRSSVQKLLELVELKLKEVIS------REPTLL 137
N L KW F +A++A H ++ E ++ ++ + +
Sbjct: 63 TNLKELEKWEGFFKEQGFFPVAVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AETGNKPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L +
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|314933424|ref|ZP_07840789.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
gi|313653574|gb|EFS17331.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus caprae
C87]
Length = 288
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINA-HSRSSVQKLLELVELKLKEVIS------REPTLL 137
N L KW F +A++A H ++ E ++ ++ + +
Sbjct: 63 TNLKELEKWEGFFKEQGFFPVAVDAKHGKNLKNVEAEAIKATKEKFEREKEKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN + + ++ A G PGVT+ K+ S+ +
Sbjct: 123 AMIVGIPNVGKSTLINKLAKRSI-----------AQTGNKPGVTKQQQWIKVGK--SLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D E G KL+L+G+IKDS+V + +A Y L +
Sbjct: 170 LDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFM 213
>gi|401683098|ref|ZP_10814987.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
gi|400183780|gb|EJO18031.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus sp.
AS14]
Length = 283
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKFVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PT 135
DLA+ + +W +F+S ++IN+ +S+V+K+ + + + + ++R+ T
Sbjct: 62 DLADSVRIKEWQSYFESQGIPTLSINSKEQSAVKKVTDAAKNLMADKLARQKERGIRIET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D LKLAL+G+IKD+++ + + + L
Sbjct: 169 EILDTPGILWPKFEDETVALKLALTGAIKDNLLPMDEVTIFGL 211
>gi|310828461|ref|YP_003960818.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium limosum
KIST612]
gi|308740195|gb|ADO37855.1| ribosome biogenesis GTP-binding protein YlqF [Eubacterium limosum
KIST612]
Length = 276
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 18/219 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A+R I+ +LK+ D+V+EV D+R+P++S +P + KR ++ LNK DL
Sbjct: 7 IQWYPGHMAKASRQIREKLKLIDIVVEVLDARLPIASKNPDIDQYTEHKRHLVLLNKADL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL-VMVVGV 143
A+P+ KW + + + ++ +K ELV KL+ + ++ L ++ G+
Sbjct: 67 ADPDQNQKWADYLKG-RDGVDEVMLYNAFDQKKKPELVA-KLRSLNPKDKKQLKCLICGI 124
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS-IYVLDTPG 202
PNVGKS +INS+ K+ +G PGVT+ G + P + +LDTPG
Sbjct: 125 PNVGKSTIINSLI-----------GKKKTQIGNKPGVTK---GQQWLTAPDGLMLLDTPG 170
Query: 203 VLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+L P D G+ LA GSIKD++ +E IA LL L
Sbjct: 171 ILWPKFEDPAVGVHLAWIGSIKDTIFEKENIAADLLKFL 209
>gi|310779497|ref|YP_003967830.1| ribosome biogenesis GTP-binding protein YlqF [Ilyobacter polytropus
DSM 2926]
gi|309748820|gb|ADO83482.1| ribosome biogenesis GTP-binding protein YlqF [Ilyobacter polytropus
DSM 2926]
Length = 297
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 22/223 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ +KI D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDMIQENMKIIDIVLEIVDARIPLSSKNPDIVKFAKNKKRIIILNKADL 65
Query: 85 ANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPT 135
N L W +F ++ ++ I ++A + +V+KL ++E KE R
Sbjct: 66 VNKEDLKVWKDYFIKNNFAEEVIELSAETGFNVKKLFAIIEKLSKEKKEKMMKKGLRTVN 125
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+MV G+PNVGKS LIN I K VG PG T+ +I + +
Sbjct: 126 TRLMVAGIPNVGKSRLINRIVG-----------KKSTGVGNKPGFTRGKQWVRI--KEGL 172
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P + E G LA++G+IKD V+ E +A L+
Sbjct: 173 ELLDTPGILWPKFENDEVGYSLAIAGAIKDEVIPVEEVAYKLI 215
>gi|407477585|ref|YP_006791462.1| ribosome biogenesis GTPase A [Exiguobacterium antarcticum B7]
gi|407061664|gb|AFS70854.1| Ribosome biogenesis GTPase A [Exiguobacterium antarcticum B7]
Length = 288
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 23/230 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+P+SS +P ++ + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARREVMEKLKLIDVVIELVDARLPMSSRNPMVEQITAGKPRLIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL----LELVELKLKEV--ISREPTLL 137
+A+ + +W++ D +A++A + ++ L L++ K + R P+ +
Sbjct: 62 MADARLTEQWMKALRKDGVDVVAVDAKHNKGLGQIHEGALRLMKDKHDRMRDKGRNPSAI 121
Query: 138 -VMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+++G+PNVGKS LIN + IA++ G PGVT+ K+
Sbjct: 122 RALIIGIPNVGKSTLINRLAGRNIAIT-------------GDRPGVTKRQQWIKM-KTGE 167
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ +LDTPG+L P D G +LA +G+IKD ++ + IA + + L TR
Sbjct: 168 MELLDTPGILWPKFDDQMVGYRLAATGAIKDDILNIDDIALFAMRELKTR 217
>gi|257066781|ref|YP_003153037.1| HSR1-like GTP-binding protein [Anaerococcus prevotii DSM 20548]
gi|256798661|gb|ACV29316.1| GTP-binding protein HSR1-related [Anaerococcus prevotii DSM 20548]
Length = 280
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINWFPGHM I + LK+ D+++E+ DSRIP+SS +P + ++ K R++ +NK D
Sbjct: 4 NINWFPGHMKKTKEIIINNLKLVDVILEIIDSRIPISSRNPMIDEIVADKPRMVIMNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTL 136
L++P KWV+ F + +N+ V K+ + LK+ + P +
Sbjct: 64 LSDPEENKKWVKKFREEGIPALLMNSKENVPVDKIYKEARTLLKDKFEKNEKKNIDNPMI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+M+VGVPN GKS IN + K K A VG PG+TQ K +I
Sbjct: 124 RMMIVGVPNSGKSTFINKVS-----------KKKGAKVGNRPGITQTKQWIKTGS--NIQ 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P + + GL L+ + +IKD V+ E + L
Sbjct: 171 LLDTPGILWPKFEE-KIGLHLSFTNAIKDEVLNIEDLTLKFL 211
>gi|419841874|ref|ZP_14365236.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|386903911|gb|EIJ68712.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 296
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 135/260 (51%), Gaps = 25/260 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM IK + + D+V+E+ D+RIPLSS +P + K+R++ LNK DL
Sbjct: 6 INWYPGHMKKTKDLIKENMPLIDVVLEIVDARIPLSSKNPDIPIFAKNKKRIVVLNKSDL 65
Query: 85 ANPNILNKWVRHF-DSCKQDYIA-INAHSRSSVQKLLELVELKLKEVIS-------REPT 135
+ L++W +F K D + I+A + +V++L ++ KE ++
Sbjct: 66 VEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYAYIDKVSKEKKEKLYAKGLKKVN 125
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +MV+G+PNVGKS LIN I A VG PG T+ K+ + +
Sbjct: 126 IRIMVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTKGKQWVKL--KDGL 172
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P + E G LA++G+IKD ++ E +A L+ + + G W L
Sbjct: 173 ELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFLSKMVSLG---KWSVLRE 229
Query: 256 RTEVSQSETENKHEYNLKDL 275
R ++ + + EY L+ +
Sbjct: 230 RYKLQEEDYHEISEYILEKI 249
>gi|332523230|ref|ZP_08399482.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
gi|332314494|gb|EGJ27479.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
porcinus str. Jelinkova 176]
Length = 287
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ + +W + ++S +AIN+ +++V+K+ + + + I++ + TL
Sbjct: 64 ADQSRTKEWQQFYESKGIKTLAINSKEQATVKKVTDAARALMTDKIAKLRQRGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDQVVGLKLALTGAIKDQLL 201
>gi|417837634|ref|ZP_12483872.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
gi|338761177|gb|EGP12446.1| 50S ribosomal subunit maturation GTPase RbgA [Lactobacillus
johnsonii pf01]
Length = 279
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDILIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P KW R++ I+++A +++ L ++++L KE + P
Sbjct: 62 DLADPIQTKKWTRYYQDEGNFVISMDAQHNTNMTSLFKIIKLAGKEKTDKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA G+IK + + +A +++ L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFL 214
>gi|403745637|ref|ZP_10954432.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121355|gb|EJY55669.1| ribosome biogenesis GTP-binding protein YlqF [Alicyclobacillus
hesperidum URH17-3-68]
Length = 301
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 26/224 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHMA A R ++ R++ D+VIE+ D+R+PLSS +P LQ S K R++ + ++DL
Sbjct: 3 VQWYPGHMAKARRIMEDRVRQVDVVIELVDARLPLSSRNPALQDLSSKKPRLVVMTREDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAI-----NAHSRSSVQK-LLELVELKLKEVISR---EPT 135
A+P + W+ F S D +A+ N + S V+ L +L K++ + +
Sbjct: 63 ADPRATHAWLAAFAS--DDILAVPVNTTNGNGFSQVRDGLRKLAAAKIQRAMEKGLQRSV 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ MVVG+PNVGKS+ IN K A G PGVT+ ++ I
Sbjct: 121 VRAMVVGIPNVGKSSFINQF-----------AKRSVAKTGNKPGVTRTEQWVRMG---DI 166
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG-EERIAQYLL 238
+LDTPGVL P I E GL+LA+SG++KD + EE +A +L
Sbjct: 167 ELLDTPGVLWPKIETPEQGLRLAISGAVKDQIYDMEEGLAFFLC 210
>gi|320529142|ref|ZP_08030234.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
gi|320138772|gb|EFW30662.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas artemidis
F0399]
Length = 310
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 24/228 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ W+PGHM A R ++ LK+ D+V+E+ D+RIP+SSA+P L+ ++ K R++ LNK DL
Sbjct: 19 LQWYPGHMRKAERLVQENLKLVDVVVELLDARIPMSSANPVLREIVAGKPRLVVLNKSDL 78
Query: 85 ANPNILNKWVRHFDSCKQDYIAI------NAHSRSSVQKLLELVELKLKEVI---SREPT 135
A P WV++F S QD +A+ A ++ VQ + +L + +++ ++
Sbjct: 79 AEPAATRAWVQYFAS--QDIVAVPVDAVKGAGTKELVQAIQKLAAPRTEKLAKHGAKPRA 136
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
M++G+PNVGKS+LIN + A R V PGVT+ +I + +
Sbjct: 137 ARCMILGIPNVGKSSLINRLSGDA-----------RTKVENRPGVTRAKQWIRIGAQ--L 183
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LD PG+L P D L+LA +G+I D+V + LL VL+
Sbjct: 184 ELLDMPGILWPKFEDARAALRLAFTGAISDTVYDVGGVVLQLLRVLHA 231
>gi|306833476|ref|ZP_07466603.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|336064249|ref|YP_004559108.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
gi|304424246|gb|EFM27385.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus bovis
ATCC 700338]
gi|334282449|dbj|BAK30022.1| ribosomal biogenesis GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 284
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+ N +W +F+ +A+N+ +++V+ + + + KL+E ++ T
Sbjct: 62 DLADSNRTKEWRNYFEKQGIKTLAVNSKEQATVKLVTDAAKSLMADKLAKLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEIVGLKLALTGAIKDQLL 201
>gi|172057904|ref|YP_001814364.1| GTP-binding protein HSR1-related [Exiguobacterium sibiricum 255-15]
gi|171990425|gb|ACB61347.1| GTP-binding protein HSR1-related [Exiguobacterium sibiricum 255-15]
Length = 288
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 23/230 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+VIE+ D+R+P+SS +P ++ + K R+I LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDVVIELVDARLPMSSRNPMVEQITAGKPRLIVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINA-HSRSSVQ------KLLELVELKLKEVISREPTL 136
+A+ + KW+ D IA++A HS+ Q +L++ ++++ +
Sbjct: 62 MADARLTEKWMHALRKDGVDVIAVDAKHSKGLGQIHEGALRLMKDKHDRMRDKGRNPSAI 121
Query: 137 LVMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+++G+PNVGKS LIN + IA++ G PGVT+ K+
Sbjct: 122 RALIIGIPNVGKSTLINRLAGRNIAIT-------------GDRPGVTKRQQWIKM-KTGE 167
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ +LDTPG+L P D G +LA +G+IKD ++ + IA + + L +R
Sbjct: 168 MELLDTPGILWPKFDDQLVGYRLAATGAIKDDILNIDDIALFAIRELKSR 217
>gi|451850276|gb|EMD63578.1| hypothetical protein COCSADRAFT_37354 [Cochliobolus sativus ND90Pr]
Length = 361
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 134/273 (49%), Gaps = 54/273 (19%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
++F GH + + +K L DLVIE RD R+PL+S +P + L K RVI K+DL
Sbjct: 18 SYFLGHHKSGLQKMKSLLATIDLVIECRDYRVPLTSRNPLFESALEGKERVIVYTKRDLG 77
Query: 86 -------NPNILNKW--------VRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI 130
N +++ +W VR+ + + A R SV KLL+L L+E
Sbjct: 78 GGSRDNRNEHVIAQWHHPTPTMFVRNGKDAEGE-----ASGRKSVMKLLDL----LREHA 128
Query: 131 SREPTLL---VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187
+ L+ VMVVG+PNVGKS L+N++ + K K A G PGVT+ ++
Sbjct: 129 QKRWKLVGHRVMVVGMPNVGKSTLLNALRAQGIG------KGKVAATGAQPGVTRKVSSS 182
Query: 188 KIAHRPS---------------------IYVLDTPGVLVPSIPDIETGLKLALSGSIKDS 226
+ PS +Y+LDTPGV +P +PD E +KLAL GS+KD+
Sbjct: 183 GVKIIPSEDDVESTDVGARRKLQGVGGGVYLLDTPGVFIPYVPDAEAMMKLALCGSVKDT 242
Query: 227 VVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV 259
++ +A YLL LN + L+ + EV
Sbjct: 243 IIPPVMLADYLLYHLNLQSPTLYSEYAPPTNEV 275
>gi|340752547|ref|ZP_08689346.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
gi|340567306|gb|EEO37392.2| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
2_1_31]
Length = 292
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 29/259 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
L W ++F +QD+ + ++A + +++KL E +E KL + ++
Sbjct: 66 LEKKELEVWKKYFK--EQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA+SG+I+D ++ E IA L+ + T+G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGVNLAISGAIRDEILPIEDIACSLIRKMLTQG---RWTSL 227
Query: 254 NNRTEVSQSETENKHEYNL 272
+R ++ + + +++ N+
Sbjct: 228 KDRYKLLEEDRDDEIMENI 246
>gi|339634080|ref|YP_004725721.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
gi|338853876|gb|AEJ23042.1| GTP-binding protein YlqF [Weissella koreensis KACC 15510]
Length = 292
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 20/227 (8%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G I W+PGHMA A R ++ +K D+V E+ D+RIPLSS +P L L K R++ + K
Sbjct: 2 GQIIQWYPGHMAKAFRLMRENMKYVDIVFELVDARIPLSSRNPELDDVLGDKPRLLVMTK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REP 134
DLA+P+ +W+ +F++ +A+++ R + Q + + L E ++
Sbjct: 62 TDLADPSRTKEWITYFETRGLAVVALDSRDRKTPQTITKAARKVLAEKWDHLLEKGVKDK 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ +V G+PNVGKS L+N + + A G PGVT+ + K +
Sbjct: 122 AIRALVAGIPNVGKSTLLNHLVMKNV-----------AITGDRPGVTKKLQWLKTP--TN 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D G LA++G+IKD ++ + IA +L +
Sbjct: 169 LELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVDDIALEVLKFM 215
>gi|4539443|emb|CAB40031.1| putative protein [Arabidopsis thaliana]
gi|7267763|emb|CAB81166.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 168/360 (46%), Gaps = 98/360 (27%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS--AKRRVIALNK 81
N W+ HMAAA RAI R+ + D V+E+RD+RIPLSS + L+ + S +R+I LNK
Sbjct: 25 NRRWYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLR-KFSPLPSKRIIVLNK 83
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVV 141
+LA+P L K + +F+ A+N+H++ V++ L ++ +IS LV+ +
Sbjct: 84 MELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQESPLFQILF--IISEG---LVLQI 138
Query: 142 GV-PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
G PNV YVLDT
Sbjct: 139 GSHPNV-------------------------------------------------YVLDT 149
Query: 201 PGVLVPSIPDIETGLKLALS---------------------------------GSIKDSV 227
PG+ P++ D E KLAL+ G+I D +
Sbjct: 150 PGIFPPNLYDAEICAKLALTGLISTKHKQNDYIPVKVLFLYSHSRIAQRAYWVGAIPDDI 209
Query: 228 VGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASD 287
VGE ++A+ L +LN+ W L ++++S ++ E + D + KR+ A+D
Sbjct: 210 VGELKLARLFLTILNSSHEYKKWAKLCKSQDLTESLSD---ESSKSDAKHKRQY---ATD 263
Query: 288 VTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMV 347
T + +V V+R L+ ++S FDGN+EDE + +LIE QF L+ L++P +A+ +M+
Sbjct: 264 HTQ-DFIVYDVRRVLYETISAFDGNLEDEISMGNLIETQFAALRSVLRVPEEANYVIVMI 322
>gi|149197591|ref|ZP_01874641.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
gi|149139161|gb|EDM27564.1| hypothetical protein LNTAR_20198 [Lentisphaera araneosa HTCC2155]
Length = 318
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 29/236 (12%)
Query: 15 EMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR 74
+ F KG G W+PGHM ATR I+ +LK+ D+V+ + D+R P+S+ + GL S K
Sbjct: 5 DFSFVKGVG---WYPGHMLKATRDIRKQLKLVDVVMILTDARTPVSALNEGLIKITSTKP 61
Query: 75 RVIALNKKDLANPNILNKWVRH----FDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI 130
+I LNK DLA W H +++C DY+ +R ++++ +KE
Sbjct: 62 TLIVLNKADLAEDEKTLDWAEHLKSKYENC--DYVITETINRRGLKQITNTARQLIKEDR 119
Query: 131 SREPT-------LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
++ + +M+ GVPNVGKS+LIN+++ + K A GP PGVT+
Sbjct: 120 KKKGATRPLFRPIRLMIAGVPNVGKSSLINALN-----------RKKSARTGPRPGVTRS 168
Query: 184 IAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLA 239
+A + +LDTPG++ P P +E GL+L L ++K ++G+ + YL++
Sbjct: 169 QQWITLAD--DMELLDTPGIMPPGNPLVECGLRLGLINAVKQDLIGKSLLVTYLMS 222
>gi|104774163|ref|YP_619143.1| GTP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116514256|ref|YP_813162.1| GTPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|418036285|ref|ZP_12674713.1| hypothetical protein LDBUL1519_01413 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103423244|emb|CAI98077.1| Putative GTP-binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093571|gb|ABJ58724.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|354688240|gb|EHE88283.1| hypothetical protein LDBUL1519_01413 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 285
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+VIEV D+RIP +S +P + + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGDKPHLIILNKTDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A +++Q L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V +VGVPN GKS +IN + ++ G PGVT+ A K + I +
Sbjct: 124 VCLVGVPNCGKSTIINRLVGRNVT-----------MTGDRPGVTKGQAWLKTPY--GIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D E G KLA G+IKD++ + +A +++
Sbjct: 171 LDTPGILWPKFEDQEVGYKLAAFGAIKDTIFHADDVALFVI 211
>gi|418017710|ref|ZP_12657266.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
gi|345526559|gb|EGX29870.1| 50S ribosomal subunit maturation GTPase RbgA [Streptococcus
salivarius M18]
Length = 284
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ LK D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENLKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLLILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+ N +W +F++ +AIN+ +S+V+ + + + + + I R + T
Sbjct: 62 DLADSNRTKEWRSYFENQGIKTLAINSKEQSTVKLVTDAAKSLMADKIQRLRERGIQKET 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GKS L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L D GLKLAL+G+IKD ++ + + + L T
Sbjct: 169 EILDTPGILWSKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKT 216
>gi|357238989|ref|ZP_09126325.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
gi|356752711|gb|EHI69836.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
ictaluri 707-05]
Length = 282
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK DL
Sbjct: 4 IQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMILNKVDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ +W ++F++ +AIN+ +++V+K+ E + + + + R + TL
Sbjct: 64 ADNARTKEWKKYFEAQGIKTLAINSKEQATVKKVTEAAQSLMSDKLDRLRERGIQKETLR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PN GKS L+N + K A VG PGVT+ K + +
Sbjct: 124 TMIIGIPNAGKSTLMNRLA-----------GKKIAVVGNKPGVTKGQQWLK--SNKVLEI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D GLKLAL+G+IKD ++
Sbjct: 171 LDTPGILWPKFEDELVGLKLALTGAIKDQLL 201
>gi|420161425|ref|ZP_14668190.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|420161562|ref|ZP_14668326.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745100|gb|EJF33996.1| GTP-binding protein [Weissella koreensis KCTC 3621]
gi|394745402|gb|EJF34286.1| GTP-binding protein [Weissella koreensis KCTC 3621]
Length = 292
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 20/227 (8%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G I W+PGHMA A R ++ +K D+V E+ D+RIPLSS +P L L K R++ + K
Sbjct: 2 GQIIQWYPGHMAKAFRLMRENMKYVDIVFELVDARIPLSSRNPELDDVLGDKPRLLVMTK 61
Query: 82 KDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REP 134
DLA+P+ +W+ +F++ +A+++ R + Q + + L E ++
Sbjct: 62 TDLADPSRTKEWITYFETRGLAVVALDSRDRKTPQTITKAARKVLAEKWDHLLEKGVKDK 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ +V G+PNVGKS L+N + + A G PGVT+ + K +
Sbjct: 122 AIRALVAGIPNVGKSTLLNHLVMKNV-----------AITGDRPGVTKKLQWLKTP--TN 168
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+ +LDTPGVL P D G LA++G+IKD ++ + IA +L +
Sbjct: 169 LELLDTPGVLWPKFDDQRVGQHLAMTGAIKDQLINVDDIALEVLKFM 215
>gi|379011964|ref|YP_005269776.1| putative GTP-binding protein [Acetobacterium woodii DSM 1030]
gi|375302753|gb|AFA48887.1| putative GTP-binding protein [Acetobacterium woodii DSM 1030]
Length = 280
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R IK +LK+ ++VIEV D+R+P SS +P + K+ ++ LNK DL
Sbjct: 9 IQWYPGHMAKANREIKDKLKLINVVIEVVDARLPASSKNPEINQYTWNKQHILLLNKADL 68
Query: 85 ANPNILNKWVRHF--DSCKQDYIAINAHSRSSVQKLLELVE-LKLKEVISREPTLLVMVV 141
A+P + W+ + ++ Q + +A R L+ ++ L KE + + +V
Sbjct: 69 ADPEVSLDWIDWYQKNTKIQKIVLYDAFDRRMKTDLVRTIQALNTKE----KAQVKCLVC 124
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS-IYVLDT 200
G+PNVGKS +INS+ K+ +G PGVT+ G + P + +LDT
Sbjct: 125 GIPNVGKSTVINSLIG-----------KKKTQIGNKPGVTK---GQQWLSTPDHLMLLDT 170
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
PG+L P D GL LA GSIKD++ +E IA LL L T
Sbjct: 171 PGILWPKFEDPLVGLHLAWLGSIKDTIYEKENIAADLLKYLIT 213
>gi|313901086|ref|ZP_07834574.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
gi|312954044|gb|EFR35724.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium sp. HGF2]
Length = 288
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ +L + D+VIE+RD+RIP +S +P ++ K R+I L+KKD
Sbjct: 8 IQWFPGHMTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDK 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ W + +A++ + + ++E L ++ I R +
Sbjct: 68 ADAAATKLWCSALQNETTRVVALDILKENIIPGIVEESRLLMQAKIERMKRRGIRPRAIR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVGVPNVGKS IN I K K A G PGVT+ + K+ ++ +
Sbjct: 128 AMVVGVPNVGKSTFINRIS-----------KKKVAVTGDRPGVTRALQWSKVNQ--NLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D G+ LA++G+I+D ++ E IA + + L
Sbjct: 175 LDTPGVLWPKFEDETVGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|238019254|ref|ZP_04599680.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
gi|237863953|gb|EEP65243.1| hypothetical protein VEIDISOL_01118 [Veillonella dispar ATCC 17748]
Length = 306
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 12 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDL 71
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 72 ADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVR 131
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 132 IIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 178
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G++ D V E + + LL
Sbjct: 179 LDTPGVLWPKLEDQRAAARLAMTGAVSDDVYDLEHVMKQLL 219
>gi|325846095|ref|ZP_08169189.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481688|gb|EGC84723.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 278
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 21/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I + LK+ D+V+EV D+RIP SS +P + K R+I +NK D
Sbjct: 2 NINWYPGHMKKTKEEIINSLKLVDIVLEVIDARIPESSRNPLISEITEKKDRIIIMNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL------ 137
L++P KW++ F I +N+ + + +++ + + LKE +
Sbjct: 62 LSDPIENEKWIKKFADSGIKAIKMNSKEKINTRQIYNIAKEILKEKFIKNEEKNIENENI 121
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+MVVGVPN GKS IN+I K K A VG PGVTQ K + I
Sbjct: 122 RMMVVGVPNSGKSTFINNIA-----------KRKGAKVGNRPGVTQQKQWIKTKEK--IL 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P + ++GL L+ + +IKD ++ E + L +
Sbjct: 169 LLDTPGVLWPKLEG-DSGLHLSFTNAIKDEILNVEELCLKFLEFM 212
>gi|340755132|ref|ZP_08691834.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
gi|313686144|gb|EFS22979.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
D12]
Length = 298
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 25/260 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM IK + + D+V+E+ D+RIP+SS +P + K+R++ LNK DL
Sbjct: 8 INWYPGHMKKTKDLIKENMPLIDVVLEIVDARIPISSKNPDIPMFAKNKKRIVVLNKSDL 67
Query: 85 ANPNILNKWVRHF-DSCKQDYIA-INAHSRSSVQKLLELVELKLKEVIS-------REPT 135
+ L++W +F K D + I+A + +V++L ++ KE ++
Sbjct: 68 VEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKKVN 127
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +MV+G+PNVGKS LIN I A VG PG T+ K+ + +
Sbjct: 128 IRIMVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTKGKQWVKL--KDGL 174
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P + E G LA++G+IKD ++ E +A L+ + + G W L
Sbjct: 175 ELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFLSKMVSLG---KWSVLRE 231
Query: 256 RTEVSQSETENKHEYNLKDL 275
R ++ + + EY L+ +
Sbjct: 232 RYKLQEEDYHEISEYILEKI 251
>gi|392394720|ref|YP_006431322.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525798|gb|AFM01529.1| ribosome biogenesis GTP-binding protein YlqF [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 276
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 21/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHMA A R + +L+ D+VIE+ D+R+P SS +P LQ L K +++ LNK D
Sbjct: 2 SIQWFPGHMAKAKRLLVEQLRWVDVVIELGDARLPESSRNPLLQEMLGDKPKIVILNKVD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTL 136
LA+P W R +A++A + V K++ VE + I R ++
Sbjct: 62 LADPYWTEIWTRKLRQS-SPVLAVSATGGAGVGKIVPEVERLMAHKIEKWTAKGIRARSI 120
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VM+ G+PN GKS+L+N++ A +A G PGVT+ +I R +
Sbjct: 121 RVMIAGIPNCGKSSLVNNLIGSA-----------KAKTGNKPGVTRGNQWIRIHDR--VE 167
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D E G KL G+I+D V+ E ++ ++L
Sbjct: 168 LLDTPGLLWPKFEDPEVGRKLGAVGAIRDEVLNLEELSLWVL 209
>gi|294793774|ref|ZP_06758911.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
gi|294455344|gb|EFG23716.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
3_1_44]
Length = 301
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKIDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KLL VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLLSTVERLSKPIIDRWVAKGIRSRSVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P + D +LA++G+I D V E + + LL L T
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYLLT 219
>gi|299144233|ref|ZP_07037313.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518718|gb|EFI42457.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 279
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 23/226 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ + K+ D IE+ DSRIP+SS +P L LS K+ ++ LNK D
Sbjct: 2 NINWYPGHMKKTIEDIEAKTKLVDFYIEIIDSRIPISSRNPLLNKVLSNKKGLLVLNKSD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLL-ELVELKLKEV-------ISREPT 135
L+ + KW + + I +A ++ +V K++ E + L E+ I+ P
Sbjct: 62 LSEESQNRKWAEKLSTDNKKAILYSA-AKPNVNKIINESMNLMAAEIEKSKEKGINMGP- 119
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M+VG+PN GKS IN I K K A G PGVT+ K+ P I
Sbjct: 120 LRAMIVGIPNSGKSTFINGIS-----------KRKSAKTGNRPGVTKTNQWIKL--NPKI 166
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
++LDTPGVL P D L LA +G+IKD ++ E + L+ L
Sbjct: 167 HLLDTPGVLWPKFEDQNIALNLAFTGAIKDEIMDTETLCLKLIERL 212
>gi|390629742|ref|ZP_10257734.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
gi|390484914|emb|CCF30082.1| GTP-binding protein RbgA [Weissella confusa LBAE C39-2]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 22/218 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK D+V E+ D+RIP+SS +P L L K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKYVDIVFELVDARIPVSSRNPELDEVLGQKPRLLVMTKTDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ-------KLLELVELKLKEVISREPTLL 137
A+P W ++F++ + +A++ + Q K+L L+E ++ +
Sbjct: 65 ADPERTKAWKKYFEAQGMEVVALDTRGHKTPQIMTKAARKVLADKWAALEEKGVKDKPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKR-ATVGPLPGVTQDIAGFKIAHRPSIY 196
+V G+PNVGKS L+N + TK A G PGVT+ + K ++
Sbjct: 125 ALVAGIPNVGKSTLLNHL------------VTKNVAITGDRPGVTKKLQWLKTP--TNLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
+LDTPGVL P D G LA++G+IKD ++ ++ IA
Sbjct: 171 LLDTPGVLWPKFEDQRVGEHLAMTGAIKDQLINQDDIA 208
>gi|260101618|ref|ZP_05751855.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
helveticus DSM 20075]
gi|417007631|ref|ZP_11945406.1| GTP binding protein [Lactobacillus helveticus MTCC 5463]
gi|260084581|gb|EEW68701.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
helveticus DSM 20075]
gi|328467372|gb|EGF38450.1| GTP binding protein [Lactobacillus helveticus MTCC 5463]
Length = 283
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P ++ + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPESSRNPMIEDLVGNKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV-------ELKLKEVISREPTLL 137
A+P + W + +AI++ +++QKL+ +V KL+ + PT+
Sbjct: 64 ADPVLTKNWSAKLSGPGKYVLAIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNPTIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ + G+PN GKS +IN + + R A VG PGVT+ + ++ +I V
Sbjct: 124 IALAGIPNCGKSTIINRL----VGR-------NVAEVGNKPGVTKGQRWLRTSN--NIQV 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D E G KLA G+IKDSV + +A Y+L L + + L +
Sbjct: 171 LDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLENLRQH----YLKDLTKFS 226
Query: 258 EVSQSETEN 266
+++ ++ EN
Sbjct: 227 KLNSADIEN 235
>gi|227889893|ref|ZP_04007698.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|268319576|ref|YP_003293232.1| hypothetical protein FI9785_1101 [Lactobacillus johnsonii FI9785]
gi|227849337|gb|EEJ59423.1| GTP-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|262397951|emb|CAX66965.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 279
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P KW R++ I+++A +++ L ++++L KE + P
Sbjct: 62 DLADPIQTKKWTRYYQDEGNFVISMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA G+IK + + +A +++ L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFL 214
>gi|421499461|ref|ZP_15946503.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402269611|gb|EJU18937.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 296
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 25/260 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM IK + + D+V+E+ D+RIP+SS +P + K+R++ LNK DL
Sbjct: 6 INWYPGHMKKTKDLIKENMPLIDVVLEIVDARIPISSKNPDIPMFAKNKKRIVVLNKSDL 65
Query: 85 ANPNILNKWVRHF-DSCKQDYIA-INAHSRSSVQKLLELVELKLKEVIS-------REPT 135
+ L++W +F K D + I+A + +V++L ++ KE ++
Sbjct: 66 VEKSELSRWKEYFLQQEKADAVVEISAETGYNVKQLYACIDKVSKEKKEKLYAKGLKKVN 125
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +MV+G+PNVGKS LIN I A VG PG T+ K+ + +
Sbjct: 126 IRIMVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTKGKQWVKL--KDGL 172
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P + E G LA++G+IKD ++ E +A L+ + + G W L
Sbjct: 173 ELLDTPGILWPKFENREVGFHLAMTGAIKDEILPLEEVACTFLSKMVSLG---KWSVLRE 229
Query: 256 RTEVSQSETENKHEYNLKDL 275
R ++ + + EY L+ +
Sbjct: 230 RYKLQEEDYHEISEYILEKI 249
>gi|354544939|emb|CCE41664.1| hypothetical protein CPAR2_802140 [Candida parapsilosis]
Length = 370
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 13/224 (5%)
Query: 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-- 85
F GH A + H DL++EVRD R PL++ + LS KR++I +KKDL+
Sbjct: 20 FKGHHQKALSKVGHLAPQLDLILEVRDCRAPLATTNVLFDKLLSTKRKLILYSKKDLSIL 79
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLV--MVVGV 143
P++L KW +S ++++ I+ R ++++ + ++ E +P L + M++G+
Sbjct: 80 KPDLLKKW---HNSKNEEFMFIDCRHRGDCKRIINKMT-QIYESFENKPPLGLRSMIIGM 135
Query: 144 PNVGKSALINSIHQIAL---SRFPVQEKTKR-ATVGPLPGVTQDIAGF-KIAHRPSIYVL 198
PNVGKS L+N++ Q+ L +R V K ++ A G PGVT+ + +++ P I V
Sbjct: 136 PNVGKSTLVNTMRQVGLGRDNRDSVSTKVRKVAKTGGQPGVTRSTSEIIRLSRDPDIMVY 195
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
DTPG+ +P++ ET L L L G I DS + +A YLL +LN
Sbjct: 196 DTPGIFLPTVKSPETMLSLGLVGCIHDSFIDPVVLADYLLFLLN 239
>gi|269798034|ref|YP_003311934.1| GTP-binding protein HSR1-like protein [Veillonella parvula DSM
2008]
gi|416999180|ref|ZP_11939849.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
gi|269094663|gb|ACZ24654.1| GTP-binding protein HSR1-related protein [Veillonella parvula DSM
2008]
gi|333977333|gb|EGL78192.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ACS-068-V-Sch12]
Length = 301
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P + D +LA++G+I D V E + + LL L T
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYLLT 219
>gi|385825991|ref|YP_005862333.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|329667435|gb|AEB93383.1| hypothetical protein LJP_1058c [Lactobacillus johnsonii DPC 6026]
Length = 279
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL----KLKEVISR---EPT 135
DLA+P KW+R++ I+++A +++ L ++++L K ++I++ P
Sbjct: 62 DLADPIQTKKWIRYYQDDGNFVISMDAQHTTNMTSLFKIIKLAGKKKTDKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA G+IK + + +A +++ L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFL 214
>gi|194695134|gb|ACF81651.1| unknown [Zea mays]
Length = 248
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA-HPGLQ---PQLSAKRRVIALNKK 82
W+ HMA+A RAI+ RL + DLV+EVRD+R P SS+ P L+ P +R V+ LNK
Sbjct: 24 WYGRHMASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRRGPLEPDRRAVVLLNKA 83
Query: 83 DLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKEVISREP--TLLVM 139
DLA+P+ WV + ++ +A+N+HSR S++++L++V+ +++E+ + T +
Sbjct: 84 DLADPSETEGWVAYIKKQRRCSCVAVNSHSRESIKEVLKVVQARMREIKHGDSNCTGTAL 143
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA 190
+VG+PNVGKSA++N+IHQI + K K A V PG T+DI G+K++
Sbjct: 144 LVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGETRDIRGYKVS 194
>gi|149246640|ref|XP_001527745.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447699|gb|EDK42087.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 372
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 16/226 (7%)
Query: 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-- 85
F GH A + H DL++EVRDSR P+++ + L++KR++I +KKDL+
Sbjct: 21 FKGHHHKALLKLGHLAPQLDLILEVRDSRAPIATTNVLFDKLLASKRKLILYSKKDLSIL 80
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP--TLLVMVVGV 143
P +L +W + +DY+ I+ SR +++++ + K+ I +P L ++++G+
Sbjct: 81 KPKVLQRW---HGAKNEDYMFIDCRSRRDCKRIIDEIN-KIYNGIEDKPPLGLRLIIIGM 136
Query: 144 PNVGKSALINSIHQIALSRFPVQEKT------KRATVGPLPGVTQDIAGF-KIAHRPSIY 196
PNVGKS L+N++ ++ L R P Q+ K A G PGVT+ + +++ P +
Sbjct: 137 PNVGKSTLVNTMREVGL-RDPEQKDAISTKIRKVAKTGGQPGVTRSTSEIIRLSRDPDLM 195
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
V DTPG+ +P++ D ET L L L G + DS + +A YLL VLN
Sbjct: 196 VYDTPGIFLPTVKDAETMLTLGLIGCVHDSFIDPVILADYLLFVLN 241
>gi|427392628|ref|ZP_18886633.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
gi|425731138|gb|EKU93959.1| ribosome biogenesis GTP-binding protein YlqF [Alloiococcus otitis
ATCC 51267]
Length = 281
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 20/219 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK+ D+V+E+ D+R+P SS++P L + K R+ L K DL
Sbjct: 4 IQWYPGHMAKAKREFQEKLKLVDIVLELLDARLPESSSNPMLDQIIQDKPRLKILMKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPTLL 137
A+ N+W+ ++ + +A+N + ++ + + +++ L + + + +
Sbjct: 64 ADQKRTNQWLNYYQDQGKPAMALNVKHKQDMKDVTDQIKVVLSDWQKQRQAKGLNQRAVK 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ VG+PNVGKS LIN RF + A G PGVTQ A I ++ + +
Sbjct: 124 AVSVGIPNVGKSTLIN--------RFAGKN---IAQTGNRPGVTQ--AQQWIKYKGVLEL 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQY 236
LDTPG+L P D E G KLAL+G+IKD ++ + IA Y
Sbjct: 171 LDTPGILWPKFEDQEVGKKLALTGAIKDKLLYMDDIALY 209
>gi|385815909|ref|YP_005852300.1| GTP binding protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325125946|gb|ADY85276.1| GTP binding protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 285
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D++IEV D+RIP +S +P + + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLNLIDVIIEVLDARIPSASRNPMISELVGDKPHLIILNKTDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A +++Q L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V +VGVPN GKS +IN + ++ G PGVT+ A K + I +
Sbjct: 124 VCLVGVPNCGKSTIINRLVGRNVT-----------MTGDRPGVTKGQAWLKTPY--GIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D E G KLA G+IKD++ + +A +++
Sbjct: 171 LDTPGILWPKFEDQEVGYKLAAFGAIKDTIFHADDVALFVI 211
>gi|282850262|ref|ZP_06259641.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
gi|282579755|gb|EFB85159.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella parvula
ATCC 17745]
Length = 301
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVIFELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KLL VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLLSTVEHLSKPIIDRWVAKGIRSRSVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P + D +LA++G+I D V E + + LL L T
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLLNYLLT 219
>gi|212695497|ref|ZP_03303625.1| hypothetical protein ANHYDRO_00013 [Anaerococcus hydrogenalis DSM
7454]
gi|212677497|gb|EEB37104.1| hypothetical protein ANHYDRO_00013 [Anaerococcus hydrogenalis DSM
7454]
Length = 278
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 21/225 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I + LK+ D+V+EV D+RIP SS +P + K R+I +NK D
Sbjct: 2 NINWYPGHMKKTKEEIINSLKLVDIVLEVIDARIPESSRNPLISEITEKKDRIIIMNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL------ 137
L++P KW++ F I +N+ + + +++ + + LKE +
Sbjct: 62 LSDPIENEKWIKKFADSGIKAIKMNSKEKINTRQIYNIAKEILKEKFIKNEEKNIENENI 121
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+MVVGVPN GKS IN+I K K A VG PGVTQ K + I
Sbjct: 122 RMMVVGVPNSGKSTFINNIA-----------KRKGAKVGNRPGVTQQKQWIKTKEK--IL 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P + ++GL L+ + +IKD ++ E + L +
Sbjct: 169 LLDTPGVLWPKLEG-DSGLHLSFTNAIKDEILNIEELCLKFLEFM 212
>gi|195502711|ref|XP_002098346.1| GE24007 [Drosophila yakuba]
gi|194184447|gb|EDW98058.1| GE24007 [Drosophila yakuba]
Length = 323
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 162/369 (43%), Gaps = 96/369 (26%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA---KRRVIALNK 81
INWFPGHM R I+ +L+ D ++E+ D+RIPL+ + ++ K ++ LNK
Sbjct: 20 INWFPGHMTKGMRQIQQKLRNVDCIVEIHDARIPLAGRNSQFFDTITGSGVKPHILVLNK 79
Query: 82 KDLANPNILNKW----------VRH--FDSCKQDYIAINAHSRSSVQKLLELV------E 123
DL N +RH F +CK V +L L
Sbjct: 80 VDLLGAKQQNGVLQQLRRQQPELRHILFTNCKD-------QRNHGVLDILPLATRLVGES 132
Query: 124 LKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
+ + E L M++GVPNVGKS++IN + + L +K A VG G+T+
Sbjct: 133 SRFNRAQAAEHNL--MIIGVPNVGKSSVINVLRNVHL------KKKSAARVGAEAGITRS 184
Query: 184 IAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+ KI P +Y++DTPG+L PSI D E G+KLAL G + D +VGE+ IA YLL LN
Sbjct: 185 VGERIKIQENPPVYMIDTPGILQPSIKDDEMGMKLALVGCLPDHIVGEDLIADYLLFWLN 244
Query: 243 TRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDV----TYIEDLVTGV 298
+ K++Y ++ L+ N S V + E+L V
Sbjct: 245 ---------------------SHRKYDY-VEKLKLSSGPSDNISAVLAEYAHREELFHKV 282
Query: 299 QRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTG 358
+ ++DG VE +L L ++KF+ FR+G
Sbjct: 283 K--------QYDGRVEVMTNL-------------------------LAAARKFIHFFRSG 309
Query: 359 KLGPFILDD 367
+LG LD+
Sbjct: 310 QLGHINLDE 318
>gi|452000304|gb|EMD92765.1| hypothetical protein COCHEDRAFT_1098388 [Cochliobolus
heterostrophus C5]
Length = 361
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 54/273 (19%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
++F GH + + +K L DLVIE RD R+PL+S +P + L K RVI K+DL
Sbjct: 18 SYFLGHHKSGLQKMKSLLATIDLVIECRDYRVPLTSRNPLFESALEGKERVIVYTKRDLG 77
Query: 86 -------NPNILNKW--------VRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVI 130
N +++ +W VR+ + + A R SV KLL+L L+E
Sbjct: 78 GGSRDNRNEHVIAQWHHPTPTMFVRNGKDAEGE-----ASGRKSVMKLLDL----LREHA 128
Query: 131 SREPTLL---VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187
+ L+ VMVVG+PNVGKS L+N++ + K K A G PGVT+ ++
Sbjct: 129 QKRWKLVGHRVMVVGMPNVGKSTLLNALRAQGIG------KGKVAATGAQPGVTRKVSSS 182
Query: 188 KIAHRPS---------------------IYVLDTPGVLVPSIPDIETGLKLALSGSIKDS 226
+ PS +Y+LDTPGV +P +PD E +KLAL GS+KD+
Sbjct: 183 GVKIIPSEDDVESVDVGARRKLQGVGGGVYLLDTPGVFIPYVPDAEAMMKLALCGSVKDT 242
Query: 227 VVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV 259
++ +A YLL LN + L+ + E+
Sbjct: 243 IIPPVMLADYLLYHLNLQSPTLYSEYAPPTNEI 275
>gi|242013143|ref|XP_002427274.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511615|gb|EEB14536.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 211
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 45/223 (20%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR-RVIALN 80
G INWFPGHM + ++ +++ D+V+EV DSRIP S +P L R ++ L
Sbjct: 14 GTKINWFPGHMRNSLAQMQAKMRSVDVVVEVHDSRIPFSGRNPLFVKSLLGTRPHILVLA 73
Query: 81 KKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMV 140
K DL D+ Q +L +K K VM+
Sbjct: 74 KMDL------------IDNSPQ---------------ILTSNSIKYK----------VMI 96
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLD 199
VGVPNVGKS+LIN + I L K K VG PGVT + K+ P I+++D
Sbjct: 97 VGVPNVGKSSLINRLRHINL------RKGKATLVGSNPGVTMSVQNEIKVCTDPPIFLID 150
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPG+ +P++ DIE G+KLAL +K++++GE IA +LL +N
Sbjct: 151 TPGIFIPNVSDIECGMKLALCSCVKNNLIGEYTIADFLLYWMN 193
>gi|294669201|ref|ZP_06734281.1| ribosome biogenesis GTP-binding protein YlqF [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291308833|gb|EFE50076.1| ribosome biogenesis GTP-binding protein YlqF [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 310
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 35/326 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A +AI RLK D+VIEV D+R+P SS +P L S K ++ LNK+DL
Sbjct: 3 IQWYPGHMHKAKKAIIERLKSVDMVIEVLDARMPASSENPLLGKLSSDKPKLKILNKQDL 62
Query: 85 ANPNILNKWVRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
A+P W+ F S + IA++A R + QKL+ + + L VM+ G+
Sbjct: 63 ADPERTALWLVEFQSRPNTNAIALDASDRQAAQKLIAACRALVPNRKGVDKPLRVMICGI 122
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS LIN + L + K A G PG+T+ +A ++ DTPG+
Sbjct: 123 PNVGKSTLINGM----LGK-------KSAKTGNEPGITKAEQRLFLAD--DFWLYDTPGM 169
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSE 263
L P I E G LA G++ + + EE +A L+ L P L R + ++E
Sbjct: 170 LWPKIIVEEGGYNLAAGGAVGRNALDEETVALELIDYLRRHYLP----QLQERYQADKNE 225
Query: 264 TEN-KHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEF-DGNV-----EDE 316
+ + + E L+ + +R + Y Q+A +L++F DG++ E
Sbjct: 226 SSHWRDEQWLEWIGRRRGALLGGGRINY--------QKAAENTLTDFRDGHIGRITLETP 277
Query: 317 NDLESLIE--QQFEVLQRALKIPHKA 340
N E ++ Q+ E Q+A + KA
Sbjct: 278 NQWEQWLKAAQRREAEQKAERERRKA 303
>gi|405965346|gb|EKC30727.1| Mitochondrial GTPase 1 [Crassostrea gigas]
Length = 320
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 17/291 (5%)
Query: 22 GGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNK 81
G + WFPGHM + RL+ D V+E+ D+RIP S P + + K V+ LNK
Sbjct: 21 GHRVQWFPGHMQKGIAQLLARLRSIDCVLEIHDARIPFSGRTPLFKDMMKMKAHVLLLNK 80
Query: 82 KDLAN----PNILNKWVRHFDSCKQDYIAINA-HSRSSVQKLLELV--ELKLKEVISREP 134
DLA+ P+I+ K + K + + A +S+ +L LV + K +RE
Sbjct: 81 CDLADLSRKPDIVKKLQKE-GVDKVLFTNLTAGNSKIIKHQLFPLVVEAIHSKPRYNRET 139
Query: 135 T--LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAH 191
+ V+GVPNVGKS IN + + S +++K+ R VG + GVT+ ++G +
Sbjct: 140 AEDYEMAVIGVPNVGKSTFINYVRR---SHTTIKKKSLR--VGAVAGVTKVLSGKIRANF 194
Query: 192 RPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWR 251
P ++++DTPG+L P + ++E G+KLAL G D VVGE+ IA Y+L N +
Sbjct: 195 NPPVFLMDTPGILTPQVSELEEGMKLALCGCFPDHVVGEDLIADYMLFWFNKNSDFRYVE 254
Query: 252 HLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRAL 302
H + + H L KR K P++ + + D V L
Sbjct: 255 HFSLPEPTDNVKVLLNHIAKENQLV-KRIKSPDSREHQFFPDYVAAATLVL 304
>gi|314936594|ref|ZP_07843941.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
gi|313655213|gb|EFS18958.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
hominis subsp. hominis C80]
Length = 294
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDY-IAINAHSRSSVQKL------LELVELKLKEVISREP-TL 136
+N N + KW +F + K Y +A++A +++ + + + ++ +P +
Sbjct: 63 SNLNEMQKW-EYFFTDKGFYPVAVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS LIN + K A G PGVT+ K+ ++
Sbjct: 122 RAMIVGIPNVGKSTLINKL-----------AKKNIAQTGNKPGVTKQQQWIKVGK--ALQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KL+L+G+IKDS+V + +A Y L L
Sbjct: 169 LLDTPGILWPKFEDETVGKKLSLTGAIKDSIVHLDEVAIYGLQFL 213
>gi|289550966|ref|YP_003471870.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|385784593|ref|YP_005760766.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|418414268|ref|ZP_12987483.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180498|gb|ADC87743.1| 50S ribosomal subunit maturation GTPase RbgA [Staphylococcus
lugdunensis HKU09-01]
gi|339894849|emb|CCB54146.1| putative GTPase protein [Staphylococcus lugdunensis N920143]
gi|410876875|gb|EKS24772.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 294
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDY--IAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
N ++KW +F +Q + +A++A +++ + K+ ++E
Sbjct: 63 TNLKEMSKWEHYF--VEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRA 120
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN L+R + A G PGVT+ K+ +
Sbjct: 121 IRAMIVGIPNVGKSTLINK-----LARKNI------AQTGNKPGVTKQQQWIKVG--KVL 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KL+L+G+IKDS+V + +A ++L L
Sbjct: 168 QLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFVLNFL 213
>gi|149061481|gb|EDM11904.1| rCG47900, isoform CRA_a [Rattus norvegicus]
Length = 272
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 112/207 (54%), Gaps = 22/207 (10%)
Query: 57 IPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDYIA 106
IP S +P Q L K ++ LNK DLA+ K V+H F +C +D
Sbjct: 5 IPFSGRNPLFQELLGLKPHLLVLNKMDLADLTEQQKIVQHLEEKGLRNVIFTNCIKD--- 61
Query: 107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQ 166
+ + + K+ EL+ + + P +MVVGVPNVGKS+LINS+ + L
Sbjct: 62 --ENIKQIIPKVTELIGCSYRYHRAENPEYCIMVVGVPNVGKSSLINSLRRQHL------ 113
Query: 167 EKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKD 225
K A VG PG+T+ + ++ RP +++LDTPGVL P I +ETGLKLAL G++ D
Sbjct: 114 RTGKAARVGGEPGITRAVTSRIQVCERPLMFLLDTPGVLAPRIQSVETGLKLALCGTVLD 173
Query: 226 SVVGEERIAQYLLAVLNTRGTPLHWRH 252
+VGEE +A YLL LN G + +H
Sbjct: 174 HLVGEETMADYLLYTLNRHGLFGYVQH 200
>gi|418028946|ref|ZP_12667495.1| hypothetical protein LDBUL1632_00289 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354691283|gb|EHE91221.1| hypothetical protein LDBUL1632_00289 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 285
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+VIEV D+RIP +S +P + + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGDKPHLIILNKTDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A +++Q L L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALTTLIKKAASEKVKKLEERGASNPIIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V +VGVPN GKS +IN + ++ G PGVT+ A K + I +
Sbjct: 124 VCLVGVPNCGKSTIINRLVGRNVT-----------MTGDRPGVTKGQAWLKTPY--GIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D E G KLA G+IKD++ + +A +++
Sbjct: 171 LDTPGILWPKFEDQEVGYKLAAFGAIKDTIFHADDVALFVI 211
>gi|315924212|ref|ZP_07920438.1| ribosome biogenesis GTP-binding protein YlqF [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622614|gb|EFV02569.1| ribosome biogenesis GTP-binding protein YlqF [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 282
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 22/222 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR--RVIALNKK 82
I W+PGHMA A R I +LK+ D+VIEV D+R+P +S +PG+ L +R VI LNK
Sbjct: 8 IQWYPGHMAKAGRQIGEKLKLIDVVIEVLDARVPRASRNPGIFKMLKGRRVSHVILLNKS 67
Query: 83 DLANPNILNKWVRHF-DSCKQDYI-AINAHSRSSVQKLLELVELKLKEVISREPTLL-VM 139
DLA+P + KW F D+ D + A + ++L++ L +V ++E L+ +
Sbjct: 68 DLADPGMTQKWAASFLDTPGIDAVLPFTAFDGKAKKRLID----TLHQVNTQEKRLIKCL 123
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
+ G+PNVGKSA+IN++ K+A PGVT+ + I LD
Sbjct: 124 LCGIPNVGKSAIINTL-----------AGKKKAQTDNKPGVTKGQQWIQTGS--DILFLD 170
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P D G +LA GSIKD++ +E +A L+ +
Sbjct: 171 TPGILWPRFEDDVIGTELAWIGSIKDTIFEKENLAGDLMQFM 212
>gi|357637896|ref|ZP_09135769.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|418416463|ref|ZP_12989662.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
gi|357586350|gb|EHJ55758.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis 2285-97]
gi|410874281|gb|EKS22212.1| ribosome biogenesis GTP-binding protein YlqF [Streptococcus
urinalis FB127-CNA-2]
Length = 285
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHM+ A R ++ +K D V + D+R+PLSS +P L + K +++ LNK
Sbjct: 2 ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSLNPMLTKIVGDKPKLMILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPT 135
DLA+ +W ++ ++IN+ +S+V+K+ + L+ KLK++ R + T
Sbjct: 62 DLADSQRTKQWRDFYEKKGIKTLSINSKEQSTVKKVTDAAKALMTDKLKKLEDRGIQKQT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L M++G+PN GK+ L+N + K A VG PGVT+ K +
Sbjct: 122 LRTMIIGIPNAGKTTLMNRLAG-----------KKIAVVGNKPGVTKGQQWLK--SNKDL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
+LDTPG+L P D + GLKLAL+G+IKD ++
Sbjct: 169 EILDTPGILWPKFEDEQVGLKLALTGAIKDQLL 201
>gi|430750335|ref|YP_007213243.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
gi|430734300|gb|AGA58245.1| ribosome biogenesis GTP-binding protein YlqF [Thermobacillus
composti KWC4]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 21/226 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHM A R I+ +LK D VIE+ D+R+P SS +P + L K R++ LNK D
Sbjct: 2 TIQWFPGHMTRARRQIQEKLKQIDAVIELLDARVPHSSRNPMIDEILRGKPRLVLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ----KLLELVELKLKEVISR---EP-T 135
LA+ ++W+ F D +A++A ++ ++ +LV + + + +R +P
Sbjct: 62 LADQRATDRWIAAFREDGLDSLAVDAAGGQGIKEISARVKKLVAPQWERMAARGVVKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V++VG+PNVGKS LIN + ++ A G PGVT+ K+ +
Sbjct: 122 VRVLIVGIPNVGKSTLINRLAGRSV-----------AATGDRPGVTKGQQWIKVGG--EM 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G++LA+ GSI++ ++ E IA + + L
Sbjct: 169 ELLDTPGILWPKFDDQTVGMRLAVIGSIREEILNLEEIAFFAVKTL 214
>gi|116333442|ref|YP_794969.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098789|gb|ABJ63938.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus brevis ATCC
367]
Length = 286
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R ++ + + D+V E+ D+RIP +S +P + K +I L KK
Sbjct: 2 STIQWFPGHMAKAIRQMEENIHLVDIVFELVDARIPAASRNPEVTRIAKNKPHLIILTKK 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPT 135
DLA+P W+ ++ Q IAI++ + + +++ ++ L + ++ +E
Sbjct: 62 DLADPQQTAAWLAYYREQHQPAIAIDSRANVTPKQITKIAASILADKLAAEKAKGLKERP 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M VGVPNVGKS L+N + Q K A VG PGVT+ + + +
Sbjct: 122 MRAMTVGVPNVGKSTLLNHLVQ-----------RKAAQVGDTPGVTKGQQWLRSSKH--L 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPG+L P D ET KLAL+G+IK+ + ++ +A + L
Sbjct: 169 ELLDTPGILWPKFKDQETAQKLALTGAIKEKLYAKDDVALFAL 211
>gi|414154250|ref|ZP_11410569.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454041|emb|CCO08473.1| Ribosome biogenesis GTPase A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 286
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 20/227 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R ++ LK+ D+ IE+ D+RIP+SS +P + L K R++ LNK D
Sbjct: 4 QIQWFPGHMARARRQVQEALKLVDVAIELLDARIPVSSGNPLINQILGQKPRLVVLNKSD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS------REP-TL 136
LA+P + W++ + IA++ ++++ + E ++ R P +
Sbjct: 64 LADPALTKLWLKALERPGVKVIALDTLKGEGLKEVPRAAAALVAEQMAKLAARGRRPRAI 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+V+G+PNVGKS+ IN + K A G LPGVT+ ++ + S+
Sbjct: 124 RCLVLGIPNVGKSSFINRL-----------VGRKAAKTGDLPGVTKGQQWIRV--QGSLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPG+L P D + G KLA++G+IK+ V +A LL L +
Sbjct: 171 LLDTPGILWPKFEDPQVGYKLAITGAIKEQVFDIYEVAVRLLGWLAS 217
>gi|373121387|ref|ZP_09535255.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
gi|371665405|gb|EHO30570.1| ribosome biogenesis GTP-binding protein YlqF [Erysipelotrichaceae
bacterium 21_3]
Length = 288
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A R ++ +L + D+VIE+RD+RIP +S +P ++ K R+I L+KKD
Sbjct: 8 IQWFPGHMTKAKREMQEKLNMVDMVIELRDARIPSASKNPMIEELCQNKPRLIVLSKKDK 67
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+ W + +A++ + + +++E L ++ I R +
Sbjct: 68 ADAAATKLWCSALQNETTRVVALDILKENIIARIVEESRLLMQAKIERMKRRGIRPRAIR 127
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVGVPNVGKS IN I K K A G PGVT+ + K+ ++ +
Sbjct: 128 AMVVGVPNVGKSTFINRIS-----------KKKVAVTGDRPGVTRALQWSKVNQ--NLEL 174
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL D G+ LA++G+I+D ++ E IA + + L
Sbjct: 175 LDTPGVLWSKFEDETVGVLLAITGAIRDEILPLEEIAAWAMRYL 218
>gi|161507469|ref|YP_001577423.1| GTP binding protein [Lactobacillus helveticus DPC 4571]
gi|160348458|gb|ABX27132.1| GTP binding protein [Lactobacillus helveticus DPC 4571]
Length = 283
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 24/249 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP SS +P ++ + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPESSRNPMIEDLVGNKPHIIILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV-------ELKLKEVISREPTLL 137
A+P + W + +AI++ +++QKL+ +V KL+ + PT+
Sbjct: 64 ADPVLTKNWSAKLSGPGKYVLAIDSLHNTNMQKLISMVKKAAAEKTKKLEARGASNPTIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ + G+PN GKS +IN + + R A VG PGVT+ + + +I V
Sbjct: 124 IALAGIPNCGKSTIINRL----VGR-------NVAEVGNKPGVTKGQRWLRTSS--NIQV 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D E G KLA G+IKDSV + +A Y+L L + + L +
Sbjct: 171 LDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALYVLENLRQH----YLKDLTKFS 226
Query: 258 EVSQSETEN 266
+++ ++ EN
Sbjct: 227 KLNSADIEN 235
>gi|160880533|ref|YP_001559501.1| GTP-binding protein HSR1-related [Clostridium phytofermentans ISDg]
gi|160429199|gb|ABX42762.1| GTP-binding protein HSR1-related [Clostridium phytofermentans ISDg]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 20/222 (9%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHM A R ++ +K+ D+VIE+ D+RIP SS +P + K R+I LNK DLA+
Sbjct: 5 WYPGHMTKAKRQMQEDIKLIDVVIELVDARIPYSSKNPDIDDLAKNKSRIILLNKYDLAD 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVM 139
+ + W +++ +N+ + S V+ + E+++ +E I R+ + M
Sbjct: 65 QKMTDAWKSYYEKKGWFVALVNSRNGSGVKNVHEVIKQACQEKIERDRKRGILNRPIRAM 124
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
+VG+PNVGKS INS A ++ G PGVT+ K+ ++ +LD
Sbjct: 125 IVGIPNVGKSTFINSFAGKACTK-----------TGNKPGVTKGKQWIKL--NKNVELLD 171
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P D G+++A GSI D ++ + L+ L
Sbjct: 172 TPGILWPKFEDQVVGMRIAFIGSINDDILNPRDLCYELIEYL 213
>gi|335429710|ref|ZP_08556608.1| GTPase YlqF [Haloplasma contractile SSD-17B]
gi|334889720|gb|EGM28005.1| GTPase YlqF [Haloplasma contractile SSD-17B]
Length = 295
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ +LK+ D++ E+RD+RIP SS++P + + K R+I LNK +
Sbjct: 9 IQWFPGHMAKARRQVEEKLKLVDIIYELRDARIPYSSSNPMMGDIIKNKPRLILLNKAKM 68
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+ + +W+ ++ + I++ S ++ K+++ LK+ + ++ +
Sbjct: 69 ADEDKTEEWINYYKDNGIIALDIDSISGYNMPKIIKKSREVLKDQLEKQQQKGLKQQNIK 128
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M++G+PNVGKS IN++ K K A G PGVT+ + + + +
Sbjct: 129 AMIIGIPNVGKSTFINTL-----------AKRKVARTGDRPGVTKAQQWITVGN--GLQL 175
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P + + G KLA++G+IKD ++ + I Y L L
Sbjct: 176 LDTPGILWPKFEEQKVGFKLAITGAIKDQILHLDDITIYALDFL 219
>gi|326791385|ref|YP_004309206.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
gi|326542149|gb|ADZ84008.1| ribosome biogenesis GTP-binding protein YlqF [Clostridium
lentocellum DSM 5427]
Length = 284
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI W+PGHM R I+ +K+ D+VIE+ D+R P S+ +P + K R+I LNK D
Sbjct: 2 NIQWYPGHMTKTKRLIEENIKLVDIVIELLDARAPYSTKNPDIDKLAQNKMRIIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+ +I +W++ + + + I A + ++++ ++ E LKE I R+ +
Sbjct: 62 LADESITKEWIKWYSAHNVKVVPIIATTGKGIKEVTKIAEDLLKEKIERDRARGRIYRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VG+PNVGKS INS+ V + T A G PGVT+ KI +
Sbjct: 122 RAMIVGIPNVGKSTFINSL---------VGKGT--AKTGDKPGVTRGKQWVKI--KKGFE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LD PG+L P D LA GSI D+++ ++A +LL
Sbjct: 169 LLDMPGILWPKFEDQMVARHLAYIGSINDNILDNRQLAIHLL 210
>gi|167747196|ref|ZP_02419323.1| hypothetical protein ANACAC_01910 [Anaerostipes caccae DSM 14662]
gi|167654156|gb|EDR98285.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes caccae
DSM 14662]
Length = 291
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 22/231 (9%)
Query: 20 KGGGNIN--WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVI 77
K GG++ W+PGHM A R ++ +K+ D+VIE+ D+RIP S +P + K R+I
Sbjct: 3 KEGGHMQFQWYPGHMTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQLAQNKSRLI 62
Query: 78 ALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-- 135
LNK DLA+ W ++F +N+ + V+ + +V +E I R+
Sbjct: 63 LLNKTDLADSRKTELWEQYFKDRGFFVGKVNSQKGTGVKAVQGIVMEACREKIERDRKRG 122
Query: 136 -----LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA 190
+ M+ G+PNVGKS INS+ A ++ G PGVT+ K+
Sbjct: 123 IKNRPVRAMIAGIPNVGKSTFINSLAGKACTK-----------TGNKPGVTKGKQWIKL- 170
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+I +LDTPG+L P D GL LAL GSIK+ ++ +E +A L+ L
Sbjct: 171 -NKNIELLDTPGILWPKFEDQTVGLHLALIGSIKEEILNQEEMAMELIPFL 220
>gi|354807458|ref|ZP_09040925.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
gi|354514040|gb|EHE86020.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
curvatus CRL 705]
Length = 282
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I W+PGHMA A + IK RLK DL++E+ D+R+P SS +P + K ++ +NK D
Sbjct: 2 TIQWYPGHMAKAQKQIKERLKAVDLILEIVDARVPESSINPMIAELGQNKPTLLIMNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTL 136
+A+ +W+ F IA++A +S + ++ ++ + L + ++++ P +
Sbjct: 62 MADAKRTQQWIETFKKRGITAIALDAQHKSKLPQIEKVAQEILADKLAKKRAKGILNPVI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M VGVPNVGKS ++N + Q + A G PGVT++ K S+
Sbjct: 122 RAMCVGVPNVGKSTILNRLVQKNI-----------AVTGNRPGVTKNQQWLKAGQ--SLE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LDTPGVL P D G KLAL+G+I D++ + + Y L
Sbjct: 169 LLDTPGVLWPKFEDPAVGNKLALTGAISDAIYHPDDVVVYAL 210
>gi|313892688|ref|ZP_07826271.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442779|gb|EFR61188.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. oral
taxon 158 str. F0412]
Length = 301
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTKQGITVLAIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G++ D V E + + LL
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAVSDDVYDLEHVMKQLL 214
>gi|313123918|ref|YP_004034177.1| ras superfamily GTP-binding protein ylqf [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|422843896|ref|ZP_16890606.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|312280481|gb|ADQ61200.1| Ras superfamily GTP-binding protein YlqF [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325686019|gb|EGD28078.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 285
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+VIEV D+RIP +S +P + + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGDKPHLIILNKTDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A +++Q L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V +VGVPN GKS +IN + ++ G PGVT+ A K + I +
Sbjct: 124 VCLVGVPNCGKSTIINRLVGRNVT-----------MTGDRPGVTKGQAWLKTPY--GIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D + G KLA G+IKD++ + +A +++
Sbjct: 171 LDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHADDVALFVI 211
>gi|300812564|ref|ZP_07092981.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300496437|gb|EFK31542.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 285
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+VIEV D+RIP +S +P + + K +I LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEEKLNLIDVVIEVLDARIPSASRNPMISELVGDKPHLIVLNKTDL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + + +A++A +++Q L+ L++ KL+E + P +
Sbjct: 64 ADPVMTKLWQKKLQGPRTLVMAMDAQHNTNMQALITLIKKAASEKVKKLEERGASNPIIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ +VGVPN GKS +IN + ++ G PGVT+ A K + I +
Sbjct: 124 ICLVGVPNCGKSTIINRLVGRNVT-----------MTGDRPGVTKGQAWLKTPY--GIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPG+L P D + G KLA G+IKD++ + +A +++
Sbjct: 171 LDTPGILWPKFEDQDVGYKLAAFGAIKDTIFHADDVALFVI 211
>gi|295692914|ref|YP_003601524.1| GTP-binding protein [Lactobacillus crispatus ST1]
gi|295031020|emb|CBL50499.1| GTP-binding protein [Lactobacillus crispatus ST1]
Length = 279
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ +L + D+++EV D+RIP +S +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEELVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P + W + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + + R A VG PGVT+ K +I
Sbjct: 122 IRIALAGIPNCGKSTVINRL----VGR-------NVAEVGNKPGVTKGQRWLKT--NANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDSV + +A ++L
Sbjct: 169 QVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVL 211
>gi|421879212|ref|ZP_16310684.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
gi|390446880|emb|CCF26804.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C11]
Length = 279
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+ E+ D+RIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVAFELVDARIPESSRNPEVDKLIGGKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P +W F+S + +N + Q + + VE K ++R + +
Sbjct: 65 ADPEQTRQWKAKFESDGHTVLVLNTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS L+N H + + P ++ PGVT+ +A K + + +
Sbjct: 125 AMITGIPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LD+PGVL P D G+KLAL+G++KD++ ++ A +L++
Sbjct: 172 LDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKDDAALFLISFF 215
>gi|347534422|ref|YP_004841092.1| ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504478|gb|AEN99160.1| Ribosome biogenesis GTPase A [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 287
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 24/249 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NI WFPGHMA A R + +K+ D+V E+ D+RIP +S +P ++ K R++ L K D
Sbjct: 4 NIQWFPGHMAKAIRQFEENIKLVDIVFELVDARIPYTSINPEVKRISRDKPRLMILTKAD 63
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TL 136
LA+P + KW+ +F S IAI++ +K+ + E LK+ + + L
Sbjct: 64 LADPVMTKKWIEYFKSQGIRAIAIDSKVNGVRKKIENISEGILKDYLESQSNKGYDRKAL 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+ VGVPNVGKS L+N + V +++ A VG PGVT+ + +
Sbjct: 124 KAICVGVPNVGKSTLLNQL---------VSKRS--AQVGNRPGVTKGQQW--LTSNGKLV 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPG+L P E KL+L+G+I++S + +A + L H L NR
Sbjct: 171 LLDTPGILWPKFQSQEIAEKLSLTGAIRESSFHSDDVALFALDFFKQN----HREELKNR 226
Query: 257 TEVSQSETE 265
++ ++ E
Sbjct: 227 YHLTDADFE 235
>gi|256843159|ref|ZP_05548647.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 125-2-CHN]
gi|256614579|gb|EEU19780.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 125-2-CHN]
Length = 279
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ +L + D+++EV D+RIP +S +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P + W + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + V + A VG PGVT+ K +I
Sbjct: 122 IRIALAGIPNCGKSTVINRL---------VGQNV--AEVGNKPGVTKGQRWLKT--NANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDSV + +A ++L
Sbjct: 169 QVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVL 211
>gi|451344263|ref|ZP_21913323.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449336977|gb|EMD16145.1| ribosome biogenesis GTP-binding protein YlqF [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 289
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 20/227 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NINW+PGHMA A R I+ R+KI D+VIE+ D+R P SS + L K R++ + K
Sbjct: 6 ANINWYPGHMAKAEREIESRIKIVDMVIELVDARAPFSSRNTSFDRILKNKPRLVLMTKS 65
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+ I KW + +A+N + +K++ + L E +E
Sbjct: 66 DLADSQITEKWQSFYKEKGFLSLAVNLKNFKEEKKIINMCLAMLSEKREKEAQKGLKIRA 125
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M++GVPNVGKS LIN++ K K A G PGVT+ +I
Sbjct: 126 IRAMIIGVPNVGKSTLINAL-----------AKRKAAIAGNKPGVTKAQQIIRI--NKDF 172
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+ DTPG+L P D T +AL GSIK ++ + + Y + LN
Sbjct: 173 ELFDTPGILPPKYSDFITSCNVALIGSIKKDILPLDDLFIYAVKYLN 219
>gi|296414191|ref|XP_002836786.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295631625|emb|CAZ80977.1| unnamed protein product [Tuber melanosporum]
Length = 362
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 25/236 (10%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
++F GH A +K + DL+IE RD R+PLSS +P + L K R+I K+DLA
Sbjct: 41 SYFLGHHRAGLDRMKQLVSSVDLIIECRDYRVPLSSRNPMFEEALQEKERLIVYTKRDLA 100
Query: 86 NPNILNKWVRHFD----------SCKQDYI-AINAHSRSSVQKLLELVELKLKEVISREP 134
+ K + F C+ ++ +NA S QKL+ + SR
Sbjct: 101 AEELDLKVCKKFPLTATPNRGPIPCQHMHVLVLNA---PSSQKLVGTATAADNTIGSR-- 155
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRP 193
++VVG+PNVGKS LIN A+ R K A G PGVT+ I+ KI+ P
Sbjct: 156 ---MLVVGMPNVGKSTLIN-----AMRRVGTGNSKKAAITGGQPGVTRKISMTIKISDDP 207
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLH 249
IY++D+PGV VP +P+ +T L LAL G +KDS++ +A YLL LN R L+
Sbjct: 208 LIYLIDSPGVFVPYMPNPQTMLSLALVGCVKDSLLNPTALADYLLFHLNLRDPSLY 263
>gi|325266146|ref|ZP_08132830.1| ribosome biogenesis GTP-binding protein YlqF [Kingella
denitrificans ATCC 33394]
gi|324982376|gb|EGC18004.1| ribosome biogenesis GTP-binding protein YlqF [Kingella
denitrificans ATCC 33394]
Length = 313
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 14/225 (6%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A +AI RLK D+VIE+ D+R+P SS +P L K ++ LNK+DL
Sbjct: 3 IQWFPGHMNKAKKAIADRLKSVDMVIEMLDARLPASSENPLLAQLSKGKPKLKILNKQDL 62
Query: 85 ANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGV 143
A+P W+ +F+S +Q + IA+++ +S+ K+ + + L V++ G+
Sbjct: 63 ADPERTAAWLDYFNSREQTNAIALDSSEKSAAPKITAACRALVPNRKGIDKPLRVLICGI 122
Query: 144 PNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
PNVGKS LIN + V +K+ A G PG+T+ +A ++ DTPG+
Sbjct: 123 PNVGKSTLINGM---------VGKKS--AKTGNEPGITKAEQRLFLAD--DFWLYDTPGM 169
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPL 248
L P I ++G LA SG++ + + EE +A LL L PL
Sbjct: 170 LWPKIIVEQSGYNLAASGAVGRNALDEEEVALELLDYLRRHYLPL 214
>gi|312883732|ref|ZP_07743453.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368615|gb|EFP96146.1| ribosomal biogenesis GTPase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 314
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 18/220 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHM A + I+ + D++IEV D+RIP SS +P + K V LNK+DL
Sbjct: 6 IQWFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISELRGDKPVVKVLNKRDL 65
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP---TLLVMVV 141
A+P + W+ HF+ K++ I A + SSVQ++ +++EL K RE ++ M++
Sbjct: 66 ADPELTKLWIDHFE--KENNIKAIAITTSSVQEVNKILELCRKLAPHREEIGKSIRTMIM 123
Query: 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTP 201
G+PNVGKS +IN++ A+ A G P VT+ +I + + + DTP
Sbjct: 124 GIPNVGKSTIINTLAGRAV-----------AQTGNQPAVTRRQQ--RINLQNGVVLSDTP 170
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
G+L P + + +G +LA +G++KD+ + + +A Y + L
Sbjct: 171 GILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|256545489|ref|ZP_05472851.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus
vaginalis ATCC 51170]
gi|256398885|gb|EEU12500.1| ribosome biogenesis GTP-binding protein YlqF [Anaerococcus
vaginalis ATCC 51170]
Length = 278
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 126/248 (50%), Gaps = 25/248 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM IK+ LK+ D+V+EV D+RIP SS +P + K R+I +NK D
Sbjct: 2 NINWYPGHMKKTKEEIKNSLKLVDIVLEVIDARIPKSSRNPLISEITEKKDRIIIMNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLL------ 137
L++ KW++ F I +NA + + +++ + + L E +
Sbjct: 62 LSDQIENEKWIKKFADDGIKAIKMNAKEKINTKEIYNIAKEILFEKFKKNEEKNIENENI 121
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+MVVG+PN GKS IN+I K K A VG PGVTQ K + +I
Sbjct: 122 RMMVVGIPNSGKSTFINNIA-----------KRKGARVGNRPGVTQQKQWIK--TKENIL 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256
+LDTPGVL P +TGL L+ + +IKD ++ E + + + + ++L R
Sbjct: 169 LLDTPGVLWPKFEG-QTGLNLSFTNAIKDEILNIEELCLKFIEFM----KEFYPKNLEER 223
Query: 257 TEVSQSET 264
++ ++T
Sbjct: 224 YKIDSNKT 231
>gi|339450881|ref|ZP_08654251.1| GTP-binding protein YlqF [Leuconostoc lactis KCTC 3528]
Length = 281
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+V E+ D+RIP SS +P + + +K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVVFELVDARIPESSRNPEVDKLIGSKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P W +HF++ + ++ + Q + + VE K ++R + +
Sbjct: 65 ADPEQTRAWKQHFEAQGHTVLVLDTRDPRTPQLVTKAARRAVEAKKAAQLARGIQDQPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
++ G+PNVGKS L+N H + + P ++ PGVT+ +A K + + +
Sbjct: 125 ALIAGIPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LD+PGVL P D GLKLAL+G++KD++ ++ +LL
Sbjct: 172 LDSPGVLWPKFEDQTVGLKLALTGAVKDTIFAKDDAVLFLL 212
>gi|404483942|ref|ZP_11019157.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
gi|404342954|gb|EJZ69323.1| ribosome biogenesis GTP-binding protein YlqF [Clostridiales
bacterium OBRC5-5]
Length = 279
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A RA+ +K+ D++IE+ D+R P ++ +P + S K R+I LNK DL
Sbjct: 3 IQWYPGHMTKAKRAMSDAIKLVDIIIEMTDARAPEATRNPEIMELGSNKSRIIILNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
++ + N+W H+ + + +++ ++ V L++ +E KE R+ +
Sbjct: 63 SDESANNRWASHYKEQGYECMFMDSRKKNGVNALIKAIENVSKEKRERDAKRGIKNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV G+PNVGKS LINS+ A+ A G PGVT+ K+ + I +
Sbjct: 123 AMVAGIPNVGKSTLINSVSGRAM-----------AKTGNKPGVTKGNQWIKL--KGQIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
LDTPG+L P D G +A GSI D ++
Sbjct: 170 LDTPGILWPKFEDENIGEMIAFIGSINDMII 200
>gi|332638612|ref|ZP_08417475.1| GTP-binding protein YlqF [Weissella cibaria KACC 11862]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 22/227 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK D+V E+ D+RIP+SS +P L L K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKYVDIVFELVDARIPVSSRNPELDEVLGNKPRLLVMTKTDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ-------KLLELVELKLKEVISREPTLL 137
A+P W ++F + +A++ + Q K+L L+E ++ +
Sbjct: 65 ADPERTKAWTKYFVDQGLEVVALDTRGHKTPQIMTKAARKVLADKWAALEEKGVKDKPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKR-ATVGPLPGVTQDIAGFKIAHRPSIY 196
+V G+PNVGKS L+N + TK A G PGVT+ + K ++
Sbjct: 125 ALVAGIPNVGKSTLLNHL------------VTKNVAITGDRPGVTKKLQWLKTP--TNLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LDTPGVL P D G LA++G+IKD ++ ++ IA L + T
Sbjct: 171 LLDTPGVLWPKFEDQRVGEHLAMTGAIKDQLINQDDIALATLKFMRT 217
>gi|302670912|ref|YP_003830872.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
gi|302395385|gb|ADL34290.1| GTP-binding protein [Butyrivibrio proteoclasticus B316]
Length = 293
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N W+PGHM A R ++ +K+ D++IE+ D+RIP S +P + K R+I LNK D
Sbjct: 2 NYQWYPGHMTKAVRMMQENIKLIDIIIELTDARIPASGRNPDIDELGKNKFRLIILNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
LA+P + +W ++ + +N+ + + K+ +LV E I R+ +
Sbjct: 62 LADPQVTREWKEYYQKTGAFVMEMNSKTGNEAAKVKDLVTKACAEKIERDKKRGIVGRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
MV G+PNVGKS IN + A A G PGVT+ IA ++
Sbjct: 122 RAMVAGIPNVGKSTFINKLAGKA-----------SAKTGNKPGVTK--GKQWIALGKNMQ 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL LAL GS+ D + +A L+ +L
Sbjct: 169 LLDTPGILWPKFEDETVGLHLALIGSMNDENLDTTELACELIKIL 213
>gi|227879126|ref|ZP_03997010.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256850242|ref|ZP_05555671.1| GTP binding protein [Lactobacillus crispatus MV-1A-US]
gi|293380235|ref|ZP_06626316.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 214-1]
gi|312977294|ref|ZP_07789042.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus CTV-05]
gi|423318747|ref|ZP_17296624.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB049-03]
gi|423321615|ref|ZP_17299486.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB077-07]
gi|227861283|gb|EEJ68918.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256712879|gb|EEU27871.1| GTP binding protein [Lactobacillus crispatus MV-1A-US]
gi|290923202|gb|EFE00124.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus 214-1]
gi|310895725|gb|EFQ44791.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus CTV-05]
gi|405593395|gb|EKB66845.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB049-03]
gi|405593736|gb|EKB67176.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus FB077-07]
Length = 279
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ +L + D+++EV D+RIP +S +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKLGLIDVLVEVLDARIPQASRNPMIEGLVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P + W + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + + R A VG PGVT+ K +I
Sbjct: 122 IRIALAGIPNCGKSTVINRL----VGR-------NVAEVGNKPGVTKGQRWLKT--NANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDSV + +A ++L
Sbjct: 169 QVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVL 211
>gi|407718252|ref|YP_006795657.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
gi|407242008|gb|AFT81658.1| GTP-binding protein RbgA [Leuconostoc carnosum JB16]
Length = 284
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ L++ D+V E+ D+RIP SS +P + + +K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLRLVDVVFELVDARIPSSSRNPEVDKLIGSKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV--------ELKLKEVISREPTL 136
A+P+ W +F+S + ++ + Q + + E +L I +P +
Sbjct: 65 ADPDQTRLWKAYFESEGHTVLVLDTRDPKTPQLVTKAARRAVSSKKEAQLARGIHDQP-I 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+ G+PNVGKS L+N H + + P ++ PGVT+ +A K + +
Sbjct: 124 RAMISGIPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LD+PGVL P D G+KLAL+G++KD++ ++ A +L+A
Sbjct: 171 LLDSPGVLWPKFEDQSIGMKLALTGAVKDAIFAKDDAALFLIAFF 215
>gi|291459086|ref|ZP_06598476.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291418340|gb|EFE92059.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 295
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R I++ L++ +LVIE+ D+R P SS +P + K R++ LNK DL
Sbjct: 3 IQWYPGHMAKAKRNIRNDLQLVELVIEILDARCPESSRNPDIDSFAKDKARIMLLNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISRE-------PTLL 137
A+P + F + I+A R+ ++KL L+E +I R P +
Sbjct: 63 ADPVQNRAFSEAFRRRGFYSMEIDARERAGLKKLNPLIERACAPIIERNQKRGILTPVIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV+G+PN GKS INS A++R G PGVT+ K+ R + +
Sbjct: 123 AMVLGIPNAGKSTFINSYVGKAMAR-----------TGNRPGVTRGNQWIKVNRR--LQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+ P GL LAL GS+ D ++ + YLL L
Sbjct: 170 LDTPGITWPKFEREIVGLNLALIGSVNDEILNLSELVFYLLKYL 213
>gi|346472117|gb|AEO35903.1| hypothetical protein [Amblyomma maculatum]
Length = 312
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 17/228 (7%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKDLA 85
WFP HM + ++ +LK D ++E+ D+R+PLS +P L+A K V+ LNK DLA
Sbjct: 27 WFPTHMYTGMKDMQRKLKSVDCILELHDARVPLSGRNPNFLSMLAAIKPHVLLLNKADLA 86
Query: 86 NP---NILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE--LKLKEVISR--EPTLLV 138
+P +++ + +R + +I R+ V K++ LV ++ E +R E +
Sbjct: 87 DPEGKDVVLQRLRTEGTQHTLFIRSTDPPRN-VDKIVPLVADLIRNSERYNRLEEYDYNI 145
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDI-AGFKIAHRPSIY 196
MV+G+PNVGKS+LIN++ ++ L K +AT VG GVT + KI+ PSIY
Sbjct: 146 MVIGIPNVGKSSLINTLRKMHLG------KGGQATRVGAKAGVTMSVLERIKISQVPSIY 199
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPG+L P+ D + L+LAL G + D +VG +A YLL LN R
Sbjct: 200 LLDTPGILSPATDDPQVALQLALCGCMLDHLVGPVLMADYLLFWLNQR 247
>gi|312377201|gb|EFR24092.1| hypothetical protein AND_11567 [Anopheles darlingi]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 25/221 (11%)
Query: 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSA-KRRVIALNKKDLA---NPNILNK 92
+ ++ +LK D VIEV D+RIPL+ + + +S K ++ LNK+DL + + +
Sbjct: 2 KQMQQKLKQIDCVIEVHDARIPLTGRNKDFRTTVSGIKPHILVLNKQDLIERRTADAILQ 61
Query: 93 WVRHFDSCKQDYIAINAHSR--SSVQKLLELVELKLKEVI--------SREPTLLVMVVG 142
+R D ++ I N ++ S V++++ L + E+I + E +M++G
Sbjct: 62 RLRQQDGETENIIFTNCKNQNCSGVRRVVPLAQ----ELICGSDRYNRATEKDFCIMIIG 117
Query: 143 VPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTP 201
VPNVGKS+LIN++ L R + VG L GVT+ + +I+ PS+Y+LDTP
Sbjct: 118 VPNVGKSSLINALRNRHLHRKGASQ------VGALAGVTRSVLNRIRISQDPSVYLLDTP 171
Query: 202 GVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
G+L P+I D ETGL+LAL ++D +VGEE IA YLL +LN
Sbjct: 172 GILQPNIGDTETGLRLALVSCLQDHLVGEELIADYLLYLLN 212
>gi|302847670|ref|XP_002955369.1| hypothetical protein VOLCADRAFT_121416 [Volvox carteri f.
nagariensis]
gi|300259441|gb|EFJ43669.1| hypothetical protein VOLCADRAFT_121416 [Volvox carteri f.
nagariensis]
Length = 434
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 25/245 (10%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA A + ++ R+K+ D+++EVRD+R+PLSSA+P + KRR+I LNK DLA+
Sbjct: 1 MAKALKLMEQRIKMIDVLVEVRDARLPLSSANPDIARLAPRKRRLIVLNKIDLADHTATK 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE-----------------VISREP 134
S + A S ++L+ V L+ + P
Sbjct: 61 AACTLLQSQGHVVVPCVATREGSAGRVLDAVLDWLQTQYSPACPPSASAPSSSSSSASHP 120
Query: 135 TL-LVMVVGVPNVGKSALINSIHQIALSRFPV---QEKTKRATVGPLPGVTQDIAGFKIA 190
L L+MV G PN GKSALIN++ + A + Q + A GPLPGVT+ + GFK+
Sbjct: 121 DLSLMMVAGAPNTGKSALINALKRAAQKEGLLEGDQAFQRTARSGPLPGVTRQLGGFKVC 180
Query: 191 HRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG--EERIAQYLLAVLNTRGTPL 248
P +YVLDTPGVL P++PD ++LAL+G + +V G ++ + ++L+ +L + P
Sbjct: 181 RSPLLYVLDTPGVLPPALPDEGVAVRLALTGLMPGAVGGLTDDVLVRHLVQILVSE--PR 238
Query: 249 HWRHL 253
H R L
Sbjct: 239 HQRQL 243
>gi|241958362|ref|XP_002421900.1| mitochondrial GTPase, putative [Candida dubliniensis CD36]
gi|223645245|emb|CAX39882.1| mitochondrial GTPase, putative [Candida dubliniensis CD36]
Length = 368
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 12/226 (5%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+N F GH A H DL++EVRDSR P+S+ + L +K+++I +KKDL
Sbjct: 16 LNNFKGHHQKALSKFGHLAPQLDLILEVRDSRAPISTTNVLFDKVLPSKKKLILYSKKDL 75
Query: 85 A--NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL--LVMV 140
+ P +L KW + S + Y+ ++ S+ +K++ ++ KL + + P L M+
Sbjct: 76 SILKPRLLEKWHK---SKNEQYMFVDCRSKRDGKKIITEIK-KLYDSMETPPPLGLRTMI 131
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTK---RATVGPLPGVTQDIAGF-KIAHRPSIY 196
+G+PNVGKS+L+N++ + LS TK A G PGVT++ + +++ P I
Sbjct: 132 IGMPNVGKSSLVNTLRYVGLSEGESAISTKIRKVARTGGQPGVTRNTSEIIRLSRDPEIM 191
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
V DTPGV +P+ + ET L LAL G I +S + +A YLL VLN
Sbjct: 192 VYDTPGVFLPTTKNAETMLSLALVGCINESFIDPVILADYLLYVLN 237
>gi|189207338|ref|XP_001940003.1| mitochondrial GTPase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976096|gb|EDU42722.1| mitochondrial GTPase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 362
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 132/262 (50%), Gaps = 52/262 (19%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
++F GH + + +K L DLVIE RD R+PL+S +P + L K R++ K+DL
Sbjct: 18 SYFLGHHKSGLQKMKSLLSSIDLVIECRDYRVPLTSRNPLFEDALEGKERIVVYTKRDLG 77
Query: 86 -------NPNILNKWVRHFDSC-------KQDYIAINAHSRSSVQKLLELVELKLKEVIS 131
N ++ KW H+ + K+ IN + SV KLL++ L+E
Sbjct: 78 GGSRDNKNEQVIAKW--HYPTATMFVRNGKEAEGEING--KKSVYKLLDI----LREHAQ 129
Query: 132 REPTLL---VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI---- 184
+ L+ VMVVG+PNVGKS L+N++ + K K A G PGVT+ +
Sbjct: 130 KRWKLVGHRVMVVGMPNVGKSTLLNALRAQGIG------KGKVAATGAQPGVTRKVSSSG 183
Query: 185 --------------AGFKIAHRP---SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSV 227
AG K H+ +Y+LDTPGV +P +PD E +KLAL GS+KD++
Sbjct: 184 VKIIPSEDDMVSADAGTKNKHQGVGGGVYLLDTPGVFIPYVPDAEAMMKLALCGSVKDTI 243
Query: 228 VGEERIAQYLLAVLNTRGTPLH 249
+ +A YLL LN + L+
Sbjct: 244 IPPVMLADYLLYHLNLQSPKLY 265
>gi|303228991|ref|ZP_07315801.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
gi|302516405|gb|EFL58337.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-134-V-Col7a]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NMEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G+I D V E + + LL
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLL 214
>gi|303231444|ref|ZP_07318175.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
gi|302513881|gb|EFL55892.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
ACS-049-V-Sch6]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NMEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G+I D V E + + LL
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLL 214
>gi|350567000|ref|ZP_08935611.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
indolicus ATCC 29427]
gi|348659891|gb|EGY76609.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
indolicus ATCC 29427]
Length = 282
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
NINW+PGHM I+ + K+ D IE+ D+RIP++S +P L L K+ ++ LNK D
Sbjct: 2 NINWYPGHMKKTIEDIQAKSKLVDFYIEIIDARIPIASRNPILSKVLQNKKGLLILNKTD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT------LL 137
L+N W + + +A +S + E + E+ +E L
Sbjct: 62 LSNSEQNELWKKKLSDDNNRAVLYSAAKPNSSLIVREALNFMKDEIAKKEEKGINMGPLR 121
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PN GKS IN I KTK A VG PGVT+ K+ P +++
Sbjct: 122 AMIVGIPNSGKSTFINGIS-----------KTKSAKVGNRPGVTKTNQWIKL--NPKLHL 168
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPGVL P D + GL LA +G+IKD ++ E + L+ L
Sbjct: 169 LDTPGVLWPKFEDEKVGLNLAFTGAIKDEIMDIETLVLRLIERL 212
>gi|401680005|ref|ZP_10811929.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
gi|400219132|gb|EJO50003.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp. ACP1]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NMEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G+I D V E + + LL
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLL 214
>gi|433449601|ref|ZP_20412465.1| GTP-binding protein YlqF [Weissella ceti NC36]
gi|429539115|gb|ELA07153.1| GTP-binding protein YlqF [Weissella ceti NC36]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 22/218 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ +K D+V E+ D+RIP+SS +P L L K R++ + K DL
Sbjct: 5 IQWYPGHMAKAFRLMRENMKHVDIVFELVDARIPVSSRNPELDKVLGDKPRLMIMTKTDL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P N+W+R+F + +A++ + + Q + + L E ++ ++
Sbjct: 65 ADPERTNEWLRYFRQQGMNVVALDTRNHKTPQMITKAARNVLADKWAALAEKGVKDKSIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKR-ATVGPLPGVTQDIAGFKIAHRPSIY 196
+V G+PNVGKS L+N + TK A G PGVT+ + K ++
Sbjct: 125 ALVAGIPNVGKSTLLNHL------------VTKNVAITGDRPGVTKKLQWLKTP--TNLE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA 234
+LDTPGVL P D G LA++G+IKD +V + IA
Sbjct: 171 LLDTPGVLWPKFEDKRVGQHLAMTGAIKDQLVNLDDIA 208
>gi|429759493|ref|ZP_19291991.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
gi|429179454|gb|EKY20701.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella atypica
KON]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 20/221 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVILELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTQQGITVLAIDSKSGKGNKKLVSTVERLSKPIIDRWVAKGIRSRSIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NMEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
LDTPGVL P + D +LA++G+I D V E + + LL
Sbjct: 174 LDTPGVLWPKLEDQRAAARLAMTGAISDDVYDLEHVIKQLL 214
>gi|401565318|ref|ZP_10806158.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
gi|400187907|gb|EJO22097.1| ribosome biogenesis GTP-binding protein YlqF [Selenomonas sp.
FOBRC6]
Length = 300
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 23/227 (10%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
N+ W+PGHM A R +K LK+ D+V+E+ D+RIPLSSA+P L+ + K R+I LNK D
Sbjct: 12 NLQWYPGHMRKAERLVKENLKLVDVVLELLDARIPLSSANPVLREIVGEKPRLIVLNKAD 71
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPTL 136
LA+ WV++F + + ++A V++L++ + KL + ++
Sbjct: 72 LADEAATRTWVKYFATQGLAAVPVDAVKGRGVKELVQAIAKCAKPKTDKLVQHGAKARAA 131
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M++G+PNVGKS+LIN R KTK V PGVT+ ++ + +
Sbjct: 132 RCMILGIPNVGKSSLIN--------RLSGGTKTK---VENRPGVTRAKQWIRLGAQ--LE 178
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
+LD PG+L P D + L LA +G+I D+V +A +L +LNT
Sbjct: 179 LLDMPGILWPKFEDQQAALHLAFTGAINDNVYD---VASVVLLLLNT 222
>gi|365853584|ref|ZP_09393851.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
gi|363712209|gb|EHL95908.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
parafarraginis F0439]
Length = 296
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 24/236 (10%)
Query: 20 KGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
KG N I WFPGHMA A R + + + D+V EV D+RIPL+S +P + K
Sbjct: 2 KGANNMAVTIQWFPGHMAKAIRQFEENVSLVDIVFEVIDARIPLTSQNPEVARITGEKPH 61
Query: 76 VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT 135
+ L KKDLA+ +W+ +F Q IA++A ++ +L ++ + ++RE
Sbjct: 62 LFILTKKDLADREATQRWLAYFKDHGQPAIAVDAKDHFNINDVLSVINPIMSPKLAREEQ 121
Query: 136 -------LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188
+ + VGVPNVGKS ++N + ++R + A VG PGVT+ K
Sbjct: 122 KGMKKRPIRAVSVGVPNVGKSTVLNRL----VNR-------RAAQVGNRPGVTKGQQWLK 170
Query: 189 IAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+ + +LDTPG+L P E KLAL+G+IKDSV + IA + L R
Sbjct: 171 AGKK--LELLDTPGILWPKFASQEIANKLALTGAIKDSVFASDDIALFGLKHFRAR 224
>gi|339480648|ref|ZP_08656307.1| GTP-binding protein YlqF [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 281
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 22/225 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+V E+ D+RIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVVFELVDARIPESSRNPEIDKLIGQKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELV--------ELKLKEVISREPTL 136
A+P W + F+ + ++ + Q + + E +L I +P +
Sbjct: 65 ADPEQTRAWKKRFEEQGYTVLVLDTRDPRTPQLVTKAARRAVEAKKEAQLARGIQDQP-I 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+ GVPNVGKS L+N H + + P ++ PGVT+ +A K + +
Sbjct: 124 RAMITGVPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LD+PGVL P D G+KL+L+G++KD++ ++ A +L+A
Sbjct: 171 LLDSPGVLWPKFEDQTIGMKLSLTGAVKDTIFAKDDAALFLIAFF 215
>gi|291535187|emb|CBL08299.1| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis M50/1]
Length = 287
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ DLVIE+ D+RIPL+S +P + K R+I +NK DL
Sbjct: 3 FQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLASRNPDIDELGKNKARLILMNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
++ +W F + ++A S++ ++ + +V KE I R+ +
Sbjct: 63 SDTGRNREWSDFFREKGYYVVCLDARSKAGMKDVTNVVMEACKEKIERDRKRGIKNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS INS A A G PGVT+ ++ ++ +
Sbjct: 123 AMVVGIPNVGKSTFINSYAGKAC-----------AKTGNKPGVTKGKQWIRLNK--NVEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL LAL G+IKD ++ + ++ L+ +L
Sbjct: 170 LDTPGILWPKFEDQRVGLYLALIGAIKDEILNIDELSLELIKIL 213
>gi|294791914|ref|ZP_06757062.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
gi|294457144|gb|EFG25506.1| ribosome biogenesis GTP-binding protein YlqF [Veillonella sp.
6_1_27]
Length = 301
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++WFPGHMA ATR I +K D+VIE+ D+RIP SSA+P + + K ++ LNK DL
Sbjct: 7 VHWFPGHMAKATRMITEYIKKVDVVIELLDARIPRSSANPVITELVGQKPHIVLLNKVDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLL 137
A+P +W F +AI++ S +KL+ VE K +I R ++
Sbjct: 67 ADPKATKEWTEFFTKQGIIVLAIDSKSGKGNKKLISTVERLSKPIIDRWVAKGIRSRSVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+++G+PNVGKS LINS+ A +R + G T+ KI ++ +
Sbjct: 127 TIILGIPNVGKSTLINSLAGSAATRTANK-----------AGHTRGQQWVKIGK--NLEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNT 243
LDTPGVL P + D +LA++G+I D V E + + LL L T
Sbjct: 174 LDTPGVLWPKLEDQCAAARLAMTGAISDDVYDLEHVIKQLLNYLLT 219
>gi|336113791|ref|YP_004568558.1| HSR1-like GTP-binding protein [Bacillus coagulans 2-6]
gi|335367221|gb|AEH53172.1| GTP-binding protein HSR1-related protein [Bacillus coagulans 2-6]
Length = 270
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 120/217 (55%), Gaps = 20/217 (9%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA A R + +LK+ D+V E+ D+RIP+SS++P L + K R+ LNK D+A+P
Sbjct: 1 MAKARREVTEKLKLVDIVFELLDARIPVSSSNPMLDELIQQKPRIKLLNKADMADPAATA 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPTLLVMVVGVP 144
+W+ +AI+A S + K+++L E +L+ R + M+VG+P
Sbjct: 61 RWLEILSGGNTHVLAIDAQSGKGLDKMVKLAEQILQPKWERLRAKGIRPRAIRAMIVGIP 120
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
NVGKS LIN + +++ G PGVT+ A K+ ++ +LDTPG+L
Sbjct: 121 NVGKSTLINRLAGKNIAK-----------TGNTPGVTKAQAWIKVGK--TMELLDTPGIL 167
Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
P D ETG KLAL+G+IKD+++ + ++ + L L
Sbjct: 168 WPKFEDKETGYKLALTGAIKDTILNLQDVSVFGLRFL 204
>gi|312898596|ref|ZP_07757986.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
gi|310620515|gb|EFQ04085.1| ribosome biogenesis GTP-binding protein YlqF [Megasphaera
micronuciformis F0359]
Length = 318
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 24/229 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHMA A R I+ LKI D+ IE+ D+RIP+SS +P + L K ++ +NK DL
Sbjct: 32 INWYPGHMAKARRLIEGNLKIIDVAIELVDARIPMSSTNPMIGQLLGQKPSIVVMNKADL 91
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE---------LVELKLKEVISREPT 135
A+ IL W ++ + +A+N+ +++L++ LV+ + K + SR +
Sbjct: 92 ADTEILKLWTAYYKEQGRMVMALNSKDGKGIKQLVQAVRKLAEPKLVKWRAKGLKSR--S 149
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ +++G+PNVGKS LIN R + TK A PG T+ +A ++
Sbjct: 150 VRTIILGIPNVGKSTLIN--------RLAGRNATKTADK---PGETKGKQWVHLAD--NL 196
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR 244
+LDTPGVL P + + + +LA +G+I D+V E + L+ L+ R
Sbjct: 197 DLLDTPGVLWPKLEEQKCARRLAATGAISDTVYDMEEVVADLITTLSVR 245
>gi|317473603|ref|ZP_07932892.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
gi|316898893|gb|EFV20918.1| ribosome biogenesis GTP-binding protein YlqF [Anaerostipes sp.
3_2_56FAA]
Length = 284
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ D+VIE+ D+RIP S +P + K R+I LNK DL
Sbjct: 3 FQWYPGHMTKAKRMMQENIKLIDIVIELVDARIPFGSRNPDIDQLAQNKSRLILLNKTDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+ W ++F +N+ + V+ + +V +E I R+ +
Sbjct: 63 ADSRKTELWEQYFKDRGFFVGKVNSQKGTGVKAVQGIVMEACREKIERDRKRGIKNRPVR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS INS+ A ++ G PGVT+ K+ +I +
Sbjct: 123 AMIAGIPNVGKSTFINSLAGKACTK-----------TGNKPGVTKGKQWIKL--NKNIEL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL LAL GSIK+ ++ +E +A L+ L
Sbjct: 170 LDTPGILWPKFEDQTVGLHLALIGSIKEEILNQEEMAMELIPFL 213
>gi|47228871|emb|CAG09386.1| unnamed protein product [Tetraodon nigroviridis]
Length = 927
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 126/229 (55%), Gaps = 33/229 (14%)
Query: 37 RAIKHRLKISDLVIEVRDSRI-----PLSSAHPGLQPQLSAKRRVIALNKKDLAN----P 87
+ ++ LK D +IE+ D+RI PLS +P Q L + ++ LNKKDLA+
Sbjct: 640 KQMRASLKSVDCIIEIHDARISFPYIPLSGRNPVFQETLDVRPHLLILNKKDLADVSDKQ 699
Query: 88 NILNKWVRH------FDSCKQDYIAINAHSRSSVQKLL----ELVELKLKEVISREPTLL 137
N+L + F C + SVQ+L+ E+++ + S +
Sbjct: 700 NLLKTLAKKGVKNVLFTDCLK-------QRDESVQQLVPTVVEMIKSSPRFARSENTSYC 752
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
+MV+GVPNVGKS+LINS+ + L +K + + VG PG+T+ + ++ RP ++
Sbjct: 753 LMVIGVPNVGKSSLINSLRRTYL------KKGRASRVGGEPGITKAVLTKIQVCDRPIVH 806
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
+LDTPGVL P I +ETG+KLAL G+I D +VGE+ IA YLL LN G
Sbjct: 807 LLDTPGVLPPRIESVETGMKLALCGTILDHLVGEDVIADYLLYSLNRLG 855
>gi|154497937|ref|ZP_02036315.1| hypothetical protein BACCAP_01917 [Bacteroides capillosus ATCC
29799]
gi|150272927|gb|EDN00084.1| ribosome biogenesis GTP-binding protein YlqF [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 296
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 113/225 (50%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM R I LK D+V EV D+RIP+SS +P + + K R+I LN+ D
Sbjct: 2 DIQWFPGHMKKTQRMIAENLKYVDIVAEVIDARIPVSSRNPDIDTLVGEKPRLIVLNRAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------L 136
A+P W F S + +A + + +V+ LK+ I + +
Sbjct: 62 QADPAGNRLWGDWFRSRGWSVLETDAKEGKGINQFSPVVKEVLKDKIQQWQAKGQVGRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+VGVPNVGKS IN + + K A PGVT+ +A +
Sbjct: 122 RAMIVGVPNVGKSTFINKVA-----------RRKSAKASDKPGVTRGKQW--VAVDAGLD 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D +TGL LA +G++KD ++ E +A +LL L
Sbjct: 169 LLDTPGILWPKFEDPQTGLHLAFTGAVKDEIMDTETLACHLLEEL 213
>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus
champanellensis 18P13]
Length = 290
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM R I L + D V+E+ D+RIP+SS +P + K R++ LNK D
Sbjct: 6 SIQWFPGHMTKTRRMITANLSLVDAVVEILDARIPVSSRNPEMDRLTGGKPRLLILNKSD 65
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVIS--REPTLL---- 137
+A+ +W+ +A++ S V++ + LKE I+ R L+
Sbjct: 66 MADERTTQQWLHRLRRSGCAAVAMDCKSGKGVKQFHPALRELLKEQIAQWRAKGLVNRPI 125
Query: 138 -VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
VMVVG+PNVGKS+ IN + KRA V PGVT+ K+ +
Sbjct: 126 HVMVVGIPNVGKSSFINKM-----------AGGKRAKVEDRPGVTRTKQWVKLGD--GVE 172
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
+LDTPGVL P D + +LA +G+I D V+ E +A LL L+
Sbjct: 173 MLDTPGVLWPKFDDQQAAQRLAFTGAINDDVLDIEALAMLLLEYLH 218
>gi|89098663|ref|ZP_01171545.1| GTPase family protein [Bacillus sp. NRRL B-14911]
gi|89086625|gb|EAR65744.1| GTPase family protein [Bacillus sp. NRRL B-14911]
Length = 281
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 116/218 (53%), Gaps = 20/218 (9%)
Query: 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN 91
MA A R + +LK+ D++ E+ D+R+P SS +P + + K R++ LNK D+A+
Sbjct: 1 MAKARRQVTEKLKLVDIIFELVDARLPQSSRNPMIDEIIQHKPRLVLLNKADMADKEATK 60
Query: 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR------EP-TLLVMVVGVP 144
W+R+F +AIN+ + S ++ + + LKE R +P + M+VG+P
Sbjct: 61 AWIRYFSDRGIKALAINSQAGSGMKDISSAAQEILKEKFDRMRAKGVKPRAIRGMIVGIP 120
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204
NVGKS LIN + K A G +PGVT+ K + +LDTPG+L
Sbjct: 121 NVGKSTLINRLA-----------KKNIAKTGNMPGVTKAQQWIKAGK--EMELLDTPGIL 167
Query: 205 VPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
P D E GLKLALSG+IKD+++ IA Y L L
Sbjct: 168 WPKFEDQEVGLKLALSGAIKDTILNLHDIAIYALKFLE 205
>gi|68485571|ref|XP_713268.1| hypothetical protein CaO19.9920 [Candida albicans SC5314]
gi|68485678|ref|XP_713217.1| hypothetical protein CaO19.2384 [Candida albicans SC5314]
gi|46434698|gb|EAK94100.1| hypothetical protein CaO19.2384 [Candida albicans SC5314]
gi|46434750|gb|EAK94151.1| hypothetical protein CaO19.9920 [Candida albicans SC5314]
gi|238879798|gb|EEQ43436.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 368
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 12/226 (5%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+N F GH A H D+++EVRDSR P+S+ + L +K+++I +KKDL
Sbjct: 16 LNNFKGHHQKALSKFGHLAPQLDMILEVRDSRAPISTTNVLFDKVLPSKKKLILYSKKDL 75
Query: 85 A--NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL--LVMV 140
+ P +L KW + S + Y+ ++ S+ +K++ ++ KL + + P L M+
Sbjct: 76 SILKPRLLEKWHK---SKNEQYMFVDCRSKRDGKKIINEIK-KLYDSMETPPPLGLRTMI 131
Query: 141 VGVPNVGKSALINSIHQIALS--RFPVQEKTKR-ATVGPLPGVTQDIAGF-KIAHRPSIY 196
+G+PNVGKS+L+N++ + LS V K ++ A G PGVT+ + +++ P I
Sbjct: 132 IGMPNVGKSSLVNTLRYVGLSDGENAVSTKIRKVARTGGQPGVTRSTSEIIRLSRDPEIM 191
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
V DTPGV +P+ + ET L LAL G I +S + +A YLL VLN
Sbjct: 192 VYDTPGVFLPTTKNAETMLSLALVGCINESFIDPVILADYLLYVLN 237
>gi|315658467|ref|ZP_07911339.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
gi|315496796|gb|EFU85119.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis M23590]
Length = 295
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 24/226 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 4 IQWYPGHMAKAKRKVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 63
Query: 85 ANPNILNKWVRHFDSCKQDY--IAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
N ++KW +F +Q + +A++A +++ + K+ ++E
Sbjct: 64 TNLKEMSKWEHYF--VEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M+VG+PNVGKS LIN L+R + A G PGVT+ K+ +
Sbjct: 122 IRAMIVGIPNVGKSTLINK-----LARKNI------AQTGNKPGVTKQQQWIKVG--KVL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KL+L+G+IKDS+V + +A + L L
Sbjct: 169 QLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFGLNFL 214
>gi|395240791|ref|ZP_10417815.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394475573|emb|CCI87792.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 279
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 134/258 (51%), Gaps = 27/258 (10%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHM A ++ +L + D+++EV D+RIP +S +P + + K ++ LNK DL
Sbjct: 4 IQWYPGHMNKARNQLEDKLNLIDVIVEVLDARIPQASRNPMIGELVGQKPHIVILNKADL 63
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPTLL 137
A+P + W + IA+++ +++Q L+ L++ K ++ + PT+
Sbjct: 64 ADPVLTKFWQKELQKTANYVIAMDSLHNTNMQGLIHLIKKAGSAKTKKFEDKGAVNPTIR 123
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+ G+PN GKS +IN + + R A VG PGVT+ K + +I +
Sbjct: 124 IAFAGIPNCGKSTIINRL----VGR-------NVAEVGNKPGVTKGQTWLKT--KSNIQI 170
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257
LDTPG+L P D + G KLA G+IKD+V + +A ++L +L +LN+
Sbjct: 171 LDTPGILWPKFDDQQVGYKLAAFGAIKDTVFHADDVALFVLELLRK-------YYLNDLI 223
Query: 258 EVSQSETENKHEYNLKDL 275
+ ++S E + + DL
Sbjct: 224 KFARSNKEELEQISNPDL 241
>gi|418637478|ref|ZP_13199798.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
gi|374838986|gb|EHS02518.1| ribosome biogenesis GTP-binding protein YlqF [Staphylococcus
lugdunensis VCU139]
Length = 294
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R + +LK D+V E+ D+RIP SS +P + + K RV+ LNKKD+
Sbjct: 3 IQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDM 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
N ++KW +F +A++A +++ + K+ ++E +
Sbjct: 63 TNLKEMSKWEHYFVEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRAIR 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+VG+PNVGKS LIN L+R + A G PGVT+ K+ + +
Sbjct: 123 AMIVGIPNVGKSTLINK-----LARKNI------AQTGNKPGVTKQQQWIKVG--KVLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D G KL+L+G+IKDS+V + +A + L L
Sbjct: 170 LDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFGLNFL 213
>gi|448509063|ref|XP_003866050.1| Mtg1 protein [Candida orthopsilosis Co 90-125]
gi|380350388|emb|CCG20610.1| Mtg1 protein [Candida orthopsilosis Co 90-125]
Length = 385
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 11/223 (4%)
Query: 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-- 85
F GH A + H DL++EVRD R P+++ + LS KR++I +KKDL+
Sbjct: 35 FKGHHQKALSKVGHLAPQLDLILEVRDCRAPVATTNVLFDKLLSTKRKLILYSKKDLSIL 94
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-LLVMVVGVP 144
P++L KW S ++++ I+ R ++++ + ++ P L M++G+P
Sbjct: 95 KPDLLKKW---HSSKNEEFMFIDCRHRGDCKRIINKMTQIYDNFDAKPPLGLRAMIIGMP 151
Query: 145 NVGKSALINSIHQIAL---SRFPVQEKTKR-ATVGPLPGVTQDIAGF-KIAHRPSIYVLD 199
NVGKS L+N++ Q+ L +R V K ++ A G PGVT+ + +++ P I V D
Sbjct: 152 NVGKSTLVNTMRQVGLGRENRDSVSTKVRKVAKTGGQPGVTRSTSEIIRLSRDPDIMVYD 211
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPG+ +P++ ET L L L G I DS + +A YLL +LN
Sbjct: 212 TPGIFLPTVKSPETMLTLGLVGCIHDSYIDPVVLADYLLFLLN 254
>gi|42519031|ref|NP_964961.1| hypothetical protein LJ1105 [Lactobacillus johnsonii NCC 533]
gi|41583318|gb|AAS08927.1| hypothetical protein LJ_1105 [Lactobacillus johnsonii NCC 533]
Length = 279
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ L + D++IEV D+R+P+SS +P + K +I LNK
Sbjct: 2 ATIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIIVLNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P KW ++ I+++A +++ L ++++L KE + P
Sbjct: 62 DLADPIQTKKWTHYYQDEGNFVISMDAQHTTNMTSLFKIIKLAGKEKTDKLIAKGASNPM 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVAIAGIPNCGKSTIINRM----VGR-------NAAIVGDKPGVTRGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D E G KLA G+IK + + +A +++ L
Sbjct: 169 QILDTPGILWPKFSDQEVGYKLAACGAIKADIFHPDDVALFVIEFL 214
>gi|428219210|ref|YP_007103675.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena sp. PCC
7367]
gi|427990992|gb|AFY71247.1| ribosome biogenesis GTP-binding protein YlqF [Pseudanabaena sp. PCC
7367]
Length = 283
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 121/236 (51%), Gaps = 22/236 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGH+A A +A+K +LK D+VIEVRD+RIPL+S HP + + + ++ LN+ D
Sbjct: 5 IQWYPGHIAKAEKALKEQLKRVDVVIEVRDARIPLASCHPKMNEWIEGRSHLLVLNRVDA 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
NI W F S KQ NA + V+ LL+ V R +
Sbjct: 65 IPANIKIAWQDWFVSQKQTPFFTNAQAGKGVKGLLKAAATAGSHVNDRRKKRGMLPRPVR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP-LPGVTQDIAGFKIAHRPSIY 196
+V+G PNVGKSALIN + + KRA PGVT+ + +I+ + I
Sbjct: 125 AVVIGFPNVGKSALINRLLK------------KRAVASANRPGVTRQLRWIRISDQ--IE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRH 252
+LDTPG+L P + D + LKLA+ I + + +A + +L T+ PL R+
Sbjct: 171 LLDTPGILPPLLDDQDAALKLAICDDIGTASYEYQLVAAAAVEILVTQNAPLEDRY 226
>gi|395242086|ref|ZP_10419085.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480447|emb|CCI85325.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
pasteurii CRBIP 24.76]
Length = 279
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ ++ + D+V+EV D+RIP SS +P + + K VI LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEEKINLIDVVVEVLDARIPSSSRNPMIADLVGTKPHVIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVE-------LKLKEVISREPT 135
DLA+P + W + + + +A+++ +++Q L+ L++ KL+E + PT
Sbjct: 62 DLADPVLTKAWQKKLQTNGKFVLAMDSLHNTNMQGLIHLIKKAASEKTKKLEEKGAVNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + G+PN GKS +IN + + R A VG PGVT+ K + +I
Sbjct: 122 IRIAFAGIPNCGKSTIINRL----VGR-------NVAEVGNKPGVTKGQTWLKTS--TNI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D G KLA G+IKD+V + +A + + +L
Sbjct: 169 QILDTPGILWPKFDDQAVGYKLAAFGAIKDTVFHADDVALFTIKLL 214
>gi|256847170|ref|ZP_05552616.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
gi|256715834|gb|EEU30809.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
coleohominis 101-4-CHN]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R I+ ++ + D+V E+ D+RIP SS +P + K R++ L K
Sbjct: 2 ATIQWFPGHMAKALRQIREQMSLVDIVFELVDARIPYSSQNPEVARAAGDKPRLLILTKT 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------T 135
DLA+P + +W+ F Q +A+++ R+ + + + + L + ++ E
Sbjct: 62 DLADPQVTQEWLNFFAHHDQPVLALDSRGRNVAKVVTQKAQSILVDKLAAEQAKGMKKRA 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ M VGVPNVGKS L+N + K A G PGVT + + +
Sbjct: 122 IRAMCVGVPNVGKSTLLNHL-----------VKKNVAATGNRPGVTTGQQWLRSS--AQL 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPGVL P G LAL+G+IKDS+ ++ +A + L L
Sbjct: 169 ELLDTPGVLWPKFATERQGTLLALTGAIKDSLFAKDDVALFALHYL 214
>gi|259046714|ref|ZP_05737115.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
gi|259036610|gb|EEW37865.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
adiacens ATCC 49175]
Length = 286
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 22/225 (9%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I WFPGHMA A R +LK+ D+VIE+ D+RIP SS +P ++ K+++I LNK
Sbjct: 2 ATIQWFPGHMAKARREATEKLKLVDVVIEMVDARIPESSRNPIIEEIKGQKKQLILLNKV 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLLE-LVELKLKEVISREP 134
DLA+P+ +W +F S + A ++++++L+ + E L++ I P
Sbjct: 62 DLADPSQTKRWNDYFTSQGIKVLTTEAKDGKGIKQVKAAIKELMAPVFEKNLEKGIRPRP 121
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
L MV+G+PNVGKS IN + +A PGVT+ KI +
Sbjct: 122 IRL-MVLGIPNVGKSTFINRMIN-----------KNQAETANRPGVTKGQRWLKIGN--D 167
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLA 239
+LDTPG+L P E G KLAL+G+IKD+++ + IA + L+
Sbjct: 168 FELLDTPGILWPKFESEEVGNKLALTGAIKDALLHMDDIALFALS 212
>gi|297584020|ref|YP_003699800.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
gi|297142477|gb|ADH99234.1| ribosome biogenesis GTP-binding protein YlqF [Bacillus
selenitireducens MLS10]
Length = 285
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 138/265 (52%), Gaps = 31/265 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R ++ ++K D+VIEV D+R PL+S +P + +K R++ LNK DL
Sbjct: 3 IQWYPGHMAKARRQVQEKIKQIDVVIEVCDARAPLASRNPLVDEMTRSKPRLMLLNKSDL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ----KLLELVELKLKEVISREPT----L 136
A+P + KW +F+ + ++A ++ K+ EL + L E +R+ +
Sbjct: 63 ADPEMNRKWADYFEKQGDAVLIVDAQKGKGIKDIPGKVNELAK-PLYEKWARKKVNPRPI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPSI 195
+++G+PN GKS +IN + KR T +G PGVT+ K+ + +
Sbjct: 122 RALIIGIPNAGKSTVINRLA------------GKRITKIGDKPGVTKAQQWIKVDRQ--L 167
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255
+LDTPG+L P D G LAL+G+IK+ + E A YLL L+ L L +
Sbjct: 168 DLLDTPGILWPKFEDPHVGQMLALTGAIKEEIFDYEESAVYLLRFLSQSYPEL----LKS 223
Query: 256 RTEVSQSETENKHEYNLKDLRPKRR 280
R ++ + E +L DL KRR
Sbjct: 224 RYQIEEVPEEVG---DLFDLIGKRR 245
>gi|294782578|ref|ZP_06747904.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
gi|294481219|gb|EFG28994.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium sp.
1_1_41FAA]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 29/259 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
L W ++F +QD+ + ++A + +++KL E +E KL + ++
Sbjct: 66 LEKKELEVWKKYFK--EQDFADEVVEMSAETGYNLKKLYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA+SG+I+D ++ E +A L+ + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGVNLAISGAIRDEILPIEDVACSLIRKMLKQG---RWTSL 227
Query: 254 NNRTEVSQSETENKHEYNL 272
+R ++ + + +++ N+
Sbjct: 228 KDRYKLLEEDRDDEIMENI 246
>gi|395243567|ref|ZP_10420552.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
gi|394484187|emb|CCI81560.1| Ribosome biogenesis GTP-binding protein YlqF [Lactobacillus hominis
CRBIP 24.179]
Length = 279
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 20/231 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
NI W+PGHM A ++ L + D++IEV D+R+P+SS +P + K ++ LNK
Sbjct: 2 ANIQWYPGHMNKAKNQLEDNLDLIDVLIEVLDARLPVSSRNPMIGQLTKKKPHIVILNKS 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISR-------EPT 135
DLA+P W ++F ++++A +++ L +L++L KE + P
Sbjct: 62 DLADPIQTKLWTKYFQKEGSFVMSMDAQHNTNMTALFKLIKLAAKEKTEKLEQKGASNPV 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ V + G+PN GKS +IN + + R A VG PGVT+ + K + ++
Sbjct: 122 IRVALAGIPNCGKSTIINRL----VGR-------NAAIVGDKPGVTKGQSWLKT--KTNV 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGT 246
+LDTPG+L P D G KLA G+IK+ + + +A + + L T
Sbjct: 169 QILDTPGILWPKFSDQTVGYKLAACGAIKEDIFHADDVALFAINFLKENYT 219
>gi|227432241|ref|ZP_03914237.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352014|gb|EEJ42244.1| GTP-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 284
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 22/222 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+V E+ DSRIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVVFELVDSRIPKSSRNPEVDKLIGNKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELK----LKEVISREPTL 136
A+P+ W +HF++ + ++ + Q + + VE K L + I +P +
Sbjct: 65 ADPDQTRAWKKHFEAQGYTVLVLDTRDPRTPQLVTKAARRAVEAKKAAQLAKGIQDQP-I 123
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
M+ GVPNVGKS L+N + + + P ++ PGVT+ I K + +
Sbjct: 124 RAMISGVPNVGKSTLLNRL--VMKNVAPTADR---------PGVTKKIVWLKTPTK--LE 170
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
+LD+PGVL P D G+KLAL+G++KD++ ++ A +L+
Sbjct: 171 LLDSPGVLWPKFEDQNIGMKLALTGAVKDTIFAKDDAALFLI 212
>gi|262046366|ref|ZP_06019328.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus MV-3A-US]
gi|260573237|gb|EEX29795.1| ribosome biogenesis GTP-binding protein YlqF [Lactobacillus
crispatus MV-3A-US]
Length = 279
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 20/223 (8%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHM A ++ +L + D+ +EV D+RIP +S +P ++ + K +I LNK
Sbjct: 2 ATIQWYPGHMNKARNQLEDKLGLIDVWVEVLDARIPQASRNPMIEGLVGNKPHIIILNKA 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVEL-------KLKEVISREPT 135
DLA+P + W + +A+++ +++QKL+ LV+ KL+ + PT
Sbjct: 62 DLADPVLTKAWAAELAGDNKYVLALDSLHNTNMQKLVSLVKKAAAAKTEKLEARGASNPT 121
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
+ + + G+PN GKS +IN + + R A VG PGVT+ K +I
Sbjct: 122 IRIALAGIPNCGKSTVINRL----VGR-------NVAEVGNKPGVTKGQRWLKT--NANI 168
Query: 196 YVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLL 238
VLDTPG+L P D E G KLA G+IKDSV + +A ++L
Sbjct: 169 QVLDTPGILWPKFSDQEVGYKLAAFGAIKDSVFHADDVALFVL 211
>gi|260583826|ref|ZP_05851574.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
gi|260158452|gb|EEW93520.1| ribosome biogenesis GTP-binding protein YlqF [Granulicatella
elegans ATCC 700633]
Length = 285
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 24/233 (10%)
Query: 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKK 82
I W+PGHMA A R +LK+ D+VIE+ D+RIP SS +P + K++++ LNK
Sbjct: 2 ATIQWYPGHMAKAKREAIEKLKLVDVVIELVDARIPESSRNPIVNEIKGQKKQLMLLNKT 61
Query: 83 DLANPNILNKWVRHFDSCKQDYIAINAHS-------RSSVQKLL--ELVELKLKEVISRE 133
DLA+P KW++++ + + + A +++++ L+ E +L K V R
Sbjct: 62 DLADPIQTKKWMKYYQEEGIEVLTVEAKDGKGLNQVKAAIKALMAEEFEKLAAKGV--RP 119
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ +MV+G+PNVGKS IN + Q +A PGVT+ KI +
Sbjct: 120 RPIRLMVLGIPNVGKSTFINRMIQ-----------KNQAETANRPGVTKGQRWLKIGN-- 166
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGT 246
+LDTPG+L P + E G KLA++G+IKDS++ + +A + + + T T
Sbjct: 167 DFELLDTPGILWPKFDNQEIGNKLAVTGAIKDSLLHMDDVALFAINIFRTYYT 219
>gi|350533429|ref|ZP_08912370.1| GTPase YlqF [Vibrio rotiferianus DAT722]
Length = 314
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A + I + D++IEV D+RIP SS +P + K V LNK+D
Sbjct: 5 SIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRD 64
Query: 84 LANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL---KEVISREPTLLVM 139
LA+P + W+ HF+ IAI +S VQK++ELV KL +E I + + M
Sbjct: 65 LADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMELVR-KLAPHREEIGK--NIRTM 121
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
++G+PNVGKS +IN++ + A G P VT+ +I + I + D
Sbjct: 122 IMGIPNVGKSTIINTLAGRTI-----------AVTGNQPAVTR--RQQRINLQNGIVLSD 168
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P + + +G +LA +G++KD+ + + +A Y + L
Sbjct: 169 TPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|363897286|ref|ZP_09323825.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
gi|361958783|gb|EHL12080.1| ribosome biogenesis GTP-binding protein YlqF [Oribacterium sp.
ACB7]
Length = 292
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 115/225 (51%), Gaps = 20/225 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R +K L + D +IEV DSR P SS +P + K R++ NK DL
Sbjct: 3 IQWYPGHMAKAKRKMKEDLPLVDAIIEVIDSRCPNSSRNPEIDILAKDKARIMLFNKADL 62
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP-------TLL 137
A+P ++ F + I+A SRSSV+ + +L+ E++ R+ ++
Sbjct: 63 ADPGRTKSFMESFQKQGFYTMEIDARSRSSVKGVNKLIMESCAELLERKKQKGILSQSIK 122
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MV+G+PNVGKS IN+ V + T A G PGVT+ KI + +
Sbjct: 123 AMVLGIPNVGKSTFINAY---------VGKAT--AKTGNKPGVTKGAQWIKIGK--DLQL 169
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
LDTPG+ P GL LAL GSI D ++ E + YLL L
Sbjct: 170 LDTPGITWPKFEREIVGLNLALIGSINDEILPIEELIFYLLKYLT 214
>gi|153832059|ref|ZP_01984726.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156977301|ref|YP_001448207.1| ribosomal biogenesis GTPase [Vibrio harveyi ATCC BAA-1116]
gi|148871674|gb|EDL70515.1| GTP-binding protein [Vibrio harveyi HY01]
gi|156528895|gb|ABU73980.1| hypothetical protein VIBHAR_06087 [Vibrio harveyi ATCC BAA-1116]
Length = 314
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A + I + D++IEV D+RIP SS +P + K V LNK+D
Sbjct: 5 SIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRD 64
Query: 84 LANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL---KEVISREPTLLVM 139
LA+P + W+ HF+ IAI +S VQK++ELV KL +E I + + M
Sbjct: 65 LADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMELVR-KLAPHREEIGK--NIRTM 121
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
++G+PNVGKS +IN++ + A G P VT+ +I + I + D
Sbjct: 122 IMGIPNVGKSTIINALAGRTI-----------AVTGNQPAVTR--RQQRINLQNGIVLSD 168
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P + + +G +LA +G++KD+ + + +A Y + L
Sbjct: 169 TPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 210
>gi|422317044|ref|ZP_16398413.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
gi|404590282|gb|EKA92731.1| ribosome biogenesis GTP-binding protein YlqF [Fusobacterium
periodonticum D10]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 29/259 (11%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
INW+PGHM I+ LK+ D+V+E+ D+RIPLSS +P + K+R+I LNK DL
Sbjct: 6 INWYPGHMKKTKDLIEENLKLIDVVLEIVDARIPLSSKNPNIASLSKNKKRIIVLNKSDL 65
Query: 85 ANPNILNKWVRHFDSCKQDY----IAINAHSRSSVQKLLELVEL-------KLKEVISRE 133
L W ++F +QD+ + ++A + +++K E +E KL + ++
Sbjct: 66 VEKKELEIWKKYFK--EQDFADEVVEMSAETGYNLKKFYEAIEFVSKERKEKLLKKGLKK 123
Query: 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+ ++V+G+PNVGKS LIN I A VG PG T+ +I +
Sbjct: 124 VSTRIIVLGIPNVGKSRLINRIVG-----------KNSAGVGNKPGFTRGKQWVRI--KE 170
Query: 194 SIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253
I +LDTPG+L P G+ LA+SG+I+D ++ E IA L+ + +G W L
Sbjct: 171 GIELLDTPGILWPKFESETVGVNLAISGAIRDEILPIEDIACSLIRKMLKQG---RWTSL 227
Query: 254 NNRTEVSQSETENKHEYNL 272
+R ++ + + +++ N+
Sbjct: 228 KDRYKLLEEDRDDEIMENI 246
>gi|339443158|ref|YP_004709163.1| hypothetical protein CXIVA_20940 [Clostridium sp. SY8519]
gi|338902559|dbj|BAK48061.1| hypothetical protein CXIVA_20940 [Clostridium sp. SY8519]
Length = 282
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 20/223 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLAN 86
W+PGHMA A R ++ +++ DLVIE+ D+RIP S +P + K R+I LNK DLA+
Sbjct: 5 WYPGHMAKAKRQMQEDIRLIDLVIELTDARIPQSGRNPDIDALGKNKARLILLNKADLAD 64
Query: 87 PNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LLVM 139
+WV ++ S + + ++A SR S+ ++ + V E + R+ + M
Sbjct: 65 ERYNQQWVSYYQSLGYEALGLDARSRKSMNRITDAVMSACSEKLERDRRRGIRNRPIRAM 124
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
VVG+PNVGKS INS A A G PGVT+ ++ ++ +LD
Sbjct: 125 VVGIPNVGKSTFINSFAGKAA-----------AKTGNRPGVTKGKQWIRLNK--TLELLD 171
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
TPG+L P D G LA+ GS+ D ++ + ++ L+A L
Sbjct: 172 TPGILWPKFEDPGVGRNLAMVGSMNDQILPLDELSLDLIAFLT 214
>gi|347442010|emb|CCD34931.1| similar to mitochondrial GTPase 1 [Botryotinia fuckeliana]
Length = 344
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 134/256 (52%), Gaps = 35/256 (13%)
Query: 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA 85
+++ GH A+ +K L DL+IE RD R+PL+S +P + L+ + RVI K+DL
Sbjct: 19 SYYLGHHASGLSRMKTMLSSIDLIIECRDYRVPLTSRNPLFEQSLAGRERVIVYTKRDLG 78
Query: 86 NPN---------ILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL 136
I+ W + + + N S+S +Q +L L KE +L
Sbjct: 79 YQGLAVDKKREAIIKDWHKPSST-----LFSNHKSKSDIQTILSLC----KEHGLAHQSL 129
Query: 137 L---VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKI--- 189
+++VG+PNVGKS+L+N++ ++R K A G PG+T+ IA G KI
Sbjct: 130 TGSRILIVGMPNVGKSSLLNALRMAGVNR------GKAAFTGAQPGITRKIASGVKIVDP 183
Query: 190 ---AHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTR-G 245
A +Y++DTPGV VP +PD ++ LKLAL GS+KD+++ +A YLL +N + G
Sbjct: 184 DPEAGTEGVYLVDTPGVFVPFVPDTDSMLKLALVGSVKDTIIAPTTLADYLLFHINLKVG 243
Query: 246 TPLHWRHLNNRTEVSQ 261
++ + ++ Q
Sbjct: 244 GSVYKEYCEETNDIVQ 259
>gi|421876612|ref|ZP_16308167.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
gi|372557486|emb|CCF24287.1| GTP-binding protein RbgA [Leuconostoc citreum LBAE C10]
Length = 279
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+ E+ D+RIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVAFELVDARIPESSRNPEVDKLIGGKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P +W F+S + ++ + Q + + VE K ++R + +
Sbjct: 65 ADPEQTRQWKAKFESDGHTVLVLDTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS L+N H + + P ++ PGVT+ +A K + + +
Sbjct: 125 AMITGIPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LD+PGVL P D G+KLAL+G++KD++ ++ A +L++
Sbjct: 172 LDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKDDAALFLISFF 215
>gi|324510673|gb|ADY44462.1| GTPase 1 [Ascaris suum]
Length = 366
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 19/231 (8%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKR-RVIALNKKDLA 85
WFP HM+ + ++ +L+ DL++EV D+R+P+S +P QL R ++ LNK DL
Sbjct: 65 WFPMHMSVQLKKMEGKLRSVDLIVEVHDARVPISGRNPQFYTQLYTVRPHILVLNKMDLI 124
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTL--------L 137
+ + K V + + + + +K L ++ K+ E I EP
Sbjct: 125 DMKLYRKSVEDYYMERGVQHIVWTDCKRRKKKELRELQTKIIECIRDEPRFNRTVKTEYQ 184
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV--GPLPGVTQDIAG-FKIAHRPS 194
VMVVG+PNVGKS+LINS+ L TK + V G PGVT + ++ RP
Sbjct: 185 VMVVGIPNVGKSSLINSLRSTNLG-------TKHSAVAEGARPGVTVRVQNRVRVLDRPP 237
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245
+YVLDTPGVL P+ ++ +KLA+ I +S +A YLL +N G
Sbjct: 238 VYVLDTPGVLYPNCHNVHESMKLAICNLILESATKPHYVADYLLFWMNRIG 288
>gi|444428555|ref|ZP_21223876.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238216|gb|ELU49835.1| GTPase YlqF [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 311
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 20/222 (9%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A + I + D++IEV D+RIP SS +P + K V LNK+D
Sbjct: 2 SIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRD 61
Query: 84 LANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL---KEVISREPTLLVM 139
LA+P + W+ HF+ IAI +S VQK++ELV KL +E I + + M
Sbjct: 62 LADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMELVR-KLAPHREEIGK--NIRTM 118
Query: 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLD 199
++G+PNVGKS +IN++ + A G P VT+ +I + I + D
Sbjct: 119 IMGIPNVGKSTIINALAGRTI-----------AVTGNQPAVTR--RQQRINLQNGIVLSD 165
Query: 200 TPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
TPG+L P + + +G +LA +G++KD+ + + +A Y + L
Sbjct: 166 TPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|323497165|ref|ZP_08102185.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
gi|323317740|gb|EGA70731.1| GTPase YlqF [Vibrio sinaloensis DSM 21326]
Length = 311
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 18/221 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
+I WFPGHM A + I+ + D++IEV D+RIP SS +P + K V LNK+D
Sbjct: 2 SIQWFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPMISELRGDKPVVKVLNKRD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP---TLLVMV 140
LA+P + W+ HF+ K++ + A + S+VQ++ +++EL K RE + M+
Sbjct: 62 LADPELTELWIEHFE--KENNVKAMAITTSNVQEVNKILELCRKLAPHREEIGKNIRTMI 119
Query: 141 VGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDT 200
+G+PNVGKS +IN++ ++ A G P VT+ +I + I + DT
Sbjct: 120 MGIPNVGKSTIINTLAGRSV-----------AVTGNQPAVTRRQQ--RINLQNGIVLSDT 166
Query: 201 PGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
PG+L P + + +G +LA +G++KD+ + + +A Y + L
Sbjct: 167 PGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYL 207
>gi|401882505|gb|EJT46761.1| hypothetical protein A1Q1_04504 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701360|gb|EKD04508.1| hypothetical protein A1Q2_01205 [Trichosporon asahii var. asahii
CBS 8904]
Length = 471
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 127/253 (50%), Gaps = 27/253 (10%)
Query: 13 LGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLS- 71
L FT +WF GHMA + + L+ DLV+E RD+R+PL+S +P L
Sbjct: 5 LARTAFTYPLQTPSWFAGHMAKSLNQLPALLEEVDLVLEARDARLPLTSVNPAFDNVLEH 64
Query: 72 --------------AKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAI-NAHSRSSVQ 116
K +++ K+DLA R F + + ++ S+V+
Sbjct: 65 VWGHSGAGPDRHGKGKEKLVVYTKRDLAEQRYEAPLRRAFQNLTGQRVQFADSTVDSNVR 124
Query: 117 KLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP 176
+L+ KE L V+VVG+PNVGKS+L+N++ ++ + +K K T G
Sbjct: 125 AVLKAAVNIAKERGETLTDLKVLVVGMPNVGKSSLLNALRRVGV------KKGKAFTTGA 178
Query: 177 LPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPD----IETGLKLALSGSIKDSVVGEE 231
PGVT+ + G K+ +P++YV DTPGV+VP + E GLKLAL+ IK + EE
Sbjct: 179 TPGVTRKLTGTVKVYEKPNVYVFDTPGVMVPYLGKGEVGAERGLKLALTAGIKTGLFEEE 238
Query: 232 RIAQYLLAVLNTR 244
+A YLL +N R
Sbjct: 239 VVADYLLYKMNLR 251
>gi|304440379|ref|ZP_07400268.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371131|gb|EFM24748.1| ribosome biogenesis GTP-binding protein YlqF [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 281
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 29/246 (11%)
Query: 16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRR 75
MGF NINWFPGHM I+++ K+ D VIEV D+RIP SS +P L ++ K R
Sbjct: 1 MGFNM---NINWFPGHMKKTIEEIENKQKLVDFVIEVVDARIPRSSRNP-LFNEIIKKPR 56
Query: 76 VIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREP- 134
+I LNK+DLA+P+ WV D I N++S + +++ ++ +K+ I R+
Sbjct: 57 LIILNKEDLASPSENRAWVEAIDKTNDRAILYNSNS-GNPNVIVKESKILMKDFIERQKE 115
Query: 135 ------TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGF 187
L M+VG+PN GKS IN++ + +RAT VG PGVT+
Sbjct: 116 KGISTGALRAMIVGIPNSGKSTFINNVSK------------RRATKVGNRPGVTKTNQWI 163
Query: 188 KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIA-QYLLAVLNTRGT 246
+I +++LDTPGVL + D E L LA +G+IKD ++ E +A +++ L T
Sbjct: 164 RI--NDDLHLLDTPGVLWHKL-DKEAQLHLAWTGAIKDEIMDIETLAFEFIKYTLKLDKT 220
Query: 247 PLHWRH 252
L R+
Sbjct: 221 ILENRY 226
>gi|224541329|ref|ZP_03681868.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
15897]
gi|224525766|gb|EEF94871.1| ribosome biogenesis GTP-binding protein YlqF [Catenibacterium
mitsuokai DSM 15897]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I W+PGHMA A R I+ +LK+ D+VIE+ D+R P S+ +P L + K R+ L KKDL
Sbjct: 11 IQWYPGHMAKAQREIESKLKLVDIVIELVDARAPFSTHNPELDHMIKNKPRLYILTKKDL 70
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+P + F IA++ + +K++ + +LKE +E +
Sbjct: 71 ADPKATEALIAEFKRQGHSAIAVDLKNFKEEKKIVNMCRYQLKEKREKEAARGLKPKPIR 130
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+V G+PNVGKS IN I K K A VG PGVT+ A I +
Sbjct: 131 ALVAGIPNVGKSTFINKI-----------AKRKAAAVGNKPGVTK--AQQIIRVDKDFEL 177
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVV 228
DTPGVL P DI + +AL GSIK ++
Sbjct: 178 FDTPGVLEPKFTDINKAMNVALCGSIKMEIL 208
>gi|321479043|gb|EFX89999.1| hypothetical protein DAPPUDRAFT_186925 [Daphnia pulex]
Length = 358
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 42/239 (17%)
Query: 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-SAKRRVIALNKKDLA 85
WFPGHM + ++ +LK+ D V+EV D+RIP+S +P L +AK ++ LNK DL
Sbjct: 56 WFPGHMNRGMKQMEAKLKLVDCVLEVHDARIPISGRNPNLTHSFVAAKPYILVLNKCDL- 114
Query: 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKL------KEVISREPTLL-- 137
S Q I R ++Q ++ KL KEV R L+
Sbjct: 115 -----------IPSEYQSTIMSALKERENIQHII-FTNSKLDTCPGLKEVTKRAAQLITE 162
Query: 138 -------------VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI 184
+MV GVPNVGKS+LIN++ + + K + V P G+T+++
Sbjct: 163 TERYNRSDAVDYNLMVFGVPNVGKSSLINALRGVHM------RKKRVLQVAPEAGLTKNV 216
Query: 185 -AGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 242
++ + P++Y+ DTPG++ P I ++ G++LA S KD +VGEE + YLL LN
Sbjct: 217 HERIRVCNSPAVYLFDTPGIMNPRIATMDVGMRLASCASFKDHLVGEESVVDYLLFWLN 275
>gi|319788757|ref|YP_004090072.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
gi|315450624|gb|ADU24186.1| ribosome biogenesis GTP-binding protein YlqF [Ruminococcus albus 7]
Length = 298
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
+ WFPGHMA R + +K+ D V+E+ D+RIP SS +P ++ K R++ LNK D
Sbjct: 7 VQWFPGHMAKTRRIMASNMKLVDAVVEITDARIPYSSRNPEIKKICGNKPRMVLLNKADS 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
A+ ++ + W+ ++ +A + S +V K +++ L E I + T +
Sbjct: 67 ADADVTSMWIEYYKQQGVPALATDCRSGRNVNKFYPMLKELLSEQIEKWDTRGMTGRPIR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
+M+VG+PNVGKS+ IN + K A V PGVT+ +A +
Sbjct: 127 MMIVGIPNVGKSSFINRLAG-----------AKMAKVEDRPGVTRGKQW--VALEDGFEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LD PGVL P D G +LA +G++KD ++ E +A LL L
Sbjct: 174 LDMPGVLWPKFDDKLVGERLAFTGAVKDVILDTEYLACRLLEYL 217
>gi|170017295|ref|YP_001728214.1| GTPase [Leuconostoc citreum KM20]
gi|169804152|gb|ACA82770.1| Predicted GTPase [Leuconostoc citreum KM20]
Length = 279
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
I WFPGHMA A R ++ LK+ D+ E+ D+RIP SS +P + + K R++ + K DL
Sbjct: 5 IQWFPGHMAKAFRLMRENLKLVDVAFELVDARIPDSSRNPEVDKLIGGKPRLLIMTKADL 64
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLE----LVELKLKEVISR---EPTLL 137
A+P +W F+S + ++ + Q + + VE K ++R + +
Sbjct: 65 ADPEQTRQWKAKFESDGHTVLVLDTRDPRTPQLVTKAARRAVEAKTAAQLARGIQDQPIR 124
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
M+ G+PNVGKS L+N H + + P ++ PGVT+ +A K + + +
Sbjct: 125 AMITGIPNVGKSTLLN--HLVMKNVAPTADR---------PGVTKKVAWLKTPTK--LEL 171
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LD+PGVL P D G+KLAL+G++KD++ ++ A +L++
Sbjct: 172 LDSPGVLWPKFEDQAIGMKLALTGAVKDTIFSKDDAALFLISFF 215
>gi|257414218|ref|ZP_04745629.2| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis L1-82]
gi|257200806|gb|EEU99090.1| ribosome biogenesis GTP-binding protein YlqF [Roseburia
intestinalis L1-82]
Length = 291
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 20/224 (8%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
W+PGHM A R ++ +K+ DLVIE+ D+RIPL+S +P + K R+I +NK DL
Sbjct: 7 FQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLASRNPDIDELGKNKARLILMNKSDL 66
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPT-------LL 137
++ +W F + ++A S++ ++ + +V KE I R+ +
Sbjct: 67 SDAGRNREWSDFFREKGYYVVCLDARSKAGMKDVTNVVMEACKEKIERDRKRGIKNRPVR 126
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
MVVG+PNVGKS INS A + G PGVT+ ++ ++ +
Sbjct: 127 AMVVGIPNVGKSTFINSYAGKACVK-----------TGNKPGVTKGKQWIRLNK--NVEL 173
Query: 198 LDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
LDTPG+L P D GL LAL G+IKD ++ + ++ L+ +L
Sbjct: 174 LDTPGILWPKFEDQRVGLYLALIGAIKDEILNIDELSLELIKIL 217
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,690,856,259
Number of Sequences: 23463169
Number of extensions: 231020665
Number of successful extensions: 822900
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 3006
Number of HSP's that attempted gapping in prelim test: 813235
Number of HSP's gapped (non-prelim): 6773
length of query: 375
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 231
effective length of database: 8,980,499,031
effective search space: 2074495276161
effective search space used: 2074495276161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)