BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017187
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKD 83
I WFPGHMA A R + +LK+ D+V E+ D+RIP+SS +P ++ L K R++ LNK D
Sbjct: 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61
Query: 84 LANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISR------EP-TL 136
A+ + +W HF++ ++IN+ + R +P +
Sbjct: 62 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 121
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY 196
+++G+PNVGKS LIN + K A G PG+T K+ +
Sbjct: 122 RALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKVGK--ELE 168
Query: 197 VLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
+LDTPG+L P D GL+LA++G+IKDS++ + +A + L L
Sbjct: 169 LLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDL 84
++W+PGH+ A R IK L++ + V+EVRD+R P +++ G+ S K +I LNK D+
Sbjct: 1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV--DFSRKETIILLNKVDI 58
Query: 85 ANPNILNKWVRHFDSCKQDYIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVP 144
A+ KWV F KQ I H +S + V++VGVP
Sbjct: 59 ADEKTTKKWVEFFK--KQGKRVITTHKGEP--------RKVLLKKLSFDRLARVLIVGVP 108
Query: 145 NVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203
N GKS +IN + K KRA +VG PG+T+ I F + + + +LDTPG+
Sbjct: 109 NTGKSTIINKL------------KGKRASSVGAQPGITKGIQWFSLEN--GVKILDTPGI 154
Query: 204 LVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 241
L +I + KL L GS+ + ++RI + +
Sbjct: 155 LYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIF 192
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK-IAHRPS 194
L V +VG PNVGKS+L+N+ Q + RA V LPG T+D+ + +
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQ-----------SDRAIVTDLPGTTRDVVESQLVVGGIP 273
Query: 195 IYVLDTPGV 203
+ VLDT G+
Sbjct: 274 VQVLDTAGI 282
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195
L +++VG PNVGKS L+N + RA V +PG T+D+ +I R +
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVIRGIL 292
Query: 196 Y-VLDTPGV 203
+ ++DT GV
Sbjct: 293 FRIVDTAGV 301
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 11/46 (23%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
V +VG PNVGKS L N+I +RA V P+PG T+D
Sbjct: 183 VAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRD 217
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIY 196
V++VG PNVGKS L N + K K+A V GVT+D + + +
Sbjct: 4 VLIVGRPNVGKSTLFNKLV-----------KKKKAIVEDEEGVTRDPVQDTVEWYGKTFK 52
Query: 197 VLDTPGVL 204
++DT GV
Sbjct: 53 LVDTCGVF 60
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ-DIAGFK-IAHRPSI 195
V +VG PNVGKS L+N++ TK + + P G T+ + G K I + I
Sbjct: 12 VAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQI 60
Query: 196 YVLDTPGVLVPSIPDI 211
LDTPG+ P D+
Sbjct: 61 IFLDTPGIYEPKKSDV 76
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQ-DIAGFK-IAHRPSI 195
V +VG PNVGKS L+N++ TK + + P G T+ + G K I + I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQI 61
Query: 196 YVLDTPGVLVPSIPDI 211
LDTPG+ P D+
Sbjct: 62 IFLDTPGIYEPKKSDV 77
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI-AGFKIAHRPSIY 196
V++VG PNVGKS+L N + K + A V +PGVT+D+ G R
Sbjct: 4 VVIVGRPNVGKSSLFNRLL-----------KKRSAVVADVPGVTRDLKEGVVETDRGRFL 52
Query: 197 VLDTPGV 203
++DT G+
Sbjct: 53 LVDTGGL 59
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V VVG NVGKS IN + F E T PG T D+ + S+Y
Sbjct: 163 VYVVGCTNVGKSTFINR----XIKEFS-DETENVITTSHFPGTTLDLIDIPLDEESSLY- 216
Query: 198 LDTPGVL 204
DTPG++
Sbjct: 217 -DTPGII 222
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA---TVGPLPGVTQDIAGFKIAHRPS 194
V VVG NVGKS IN I ++E T + T PG T D+ + +
Sbjct: 165 VYVVGCTNVGKSTFINRI---------IEEATGKGNVITTSYFPGTTLDMIEIPLESGAT 215
Query: 195 IYVLDTPGVL 204
+Y DTPG++
Sbjct: 216 LY--DTPGII 223
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD-IAGFKIAHRPSI 195
V +VG PNVGKS L+N++ + K A + P P T+ + G R I
Sbjct: 9 FVAIVGKPNVGKSTLLNNLLGV-----------KVAPISPRPQTTRKRLRGILTEGRRQI 57
Query: 196 YVLDTPGVLVP 206
+DTPG+ P
Sbjct: 58 VFVDTPGLHKP 68
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 137 LVMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ +VG PNVGKS L+N + +I+++ Q R G Q +
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ-----------A 55
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP 247
IYV DTPG+ + I + A S SI D + + V TR TP
Sbjct: 56 IYV-DTPGLHMEEKRAINRLMNKAASSSIGD-------VELVIFVVEGTRWTP 100
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 137 LVMVVGVPNVGKSALINSI--HQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194
+ +VG PNVGKS L+N + +I+++ Q R G Q +
Sbjct: 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ-----------A 58
Query: 195 IYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP 247
IYV DTPG+ + I + A S SI D + + V TR TP
Sbjct: 59 IYV-DTPGLHMEEKRAINRLMNKAASSSIGD-------VELVIFVVEGTRWTP 103
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 140 VVGVPNVGKSALINSIH-QIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
+ G+ VGKS+L+N+I+ + L V EK +R G T + F YV+
Sbjct: 174 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQR---GRHTTTTAQLLKFDFGG----YVV 226
Query: 199 DTPGVLVPSIPDIE 212
DTPG I DIE
Sbjct: 227 DTPGFANLEINDIE 240
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198
++ G PN GKS L+N++ +RA V +PG T+D H +++ L
Sbjct: 237 VIAGKPNAGKSTLLNTLL-----------GQERAIVSHMPGTTRDYIEECFIHDKTMFRL 285
Query: 199 -DTPGV 203
DT G+
Sbjct: 286 TDTAGL 291
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
+V +VG PNVGKS + N +IA R + E T PGVT+D
Sbjct: 5 VVAIVGRPNVGKSTIFN---RIAGERISIVEDT--------PGVTRD 40
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183
+V +VG PNVGKS + N +IA R + E T PGVT+D
Sbjct: 25 VVAIVGRPNVGKSTIFN---RIAGERISIVEDT--------PGVTRD 60
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192
E + ++G PNVGKS+L+N++ +R V + G T+D +
Sbjct: 193 EEVIQFCLIGRPNVGKSSLVNAML-----------GEERVIVSNVAGTTRDAVDTSFTYN 241
Query: 193 PSIYVL-DTPGV 203
+V+ DT G+
Sbjct: 242 QQEFVIVDTAGM 253
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 81 KKDLANPNILNKWVRHFDSCKQDYIAI 107
KKDL NP L+ W+ D C + ++ +
Sbjct: 15 KKDLGNPTTLSSWLPTTDCCNRTWLGV 41
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVT-QDIAGFKIAHRPSIY 196
V +VG PNVGK+ + N++ + R VG PGVT + G
Sbjct: 6 VALVGNPNVGKTTIFNALTGL------------RQHVGNWPGVTVEKKEGIMEYREKEFL 53
Query: 197 VLDTPGV 203
V+D PG+
Sbjct: 54 VVDLPGI 60
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 140 VVGVPNVGKSALINSIHQ--IALSRFPVQEKTKRATVGPLP 178
+VG+PNVGKS L N++ + I + +P V P+P
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 14/72 (19%)
Query: 135 TLLVMVVGVPNVGKSALINS-IHQIALSRFPVQEKTKRATVGPLP-GVTQDIAGFKIAHR 192
+L ++V G VGKS+ +NS I + +S P Q + GP P V++ AGF
Sbjct: 39 SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSE------GPRPVXVSRSRAGF----- 87
Query: 193 PSIYVLDTPGVL 204
++ ++DTPG++
Sbjct: 88 -TLNIIDTPGLI 98
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 14/72 (19%)
Query: 135 TLLVMVVGVPNVGKSALINS-IHQIALSRFPVQEKTKRATVGPLP-GVTQDIAGFKIAHR 192
+L ++V+G VGKS+ +NS I + +S P Q + GP P V++ AGF
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE------GPRPVMVSRSRAGF----- 87
Query: 193 PSIYVLDTPGVL 204
++ ++DTPG++
Sbjct: 88 -TLNIIDTPGLI 98
>pdb|3LX2|A Chain A, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|B Chain B, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|C Chain C, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
Length = 259
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 199 DTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQ--YLLAVLNTRGTP--LHWRHLN 254
+TP + +PS+P T + L+G++K +V + ++ Y +A TP L ++
Sbjct: 119 NTPEIEIPSLP--WTVKAVVLAGALKRAVKAAKLVSDSIYFMA------TPEKLTFKAEG 170
Query: 255 NRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHV 304
N +EV T + L DL K K +A V Y+ED++ + A V
Sbjct: 171 NDSEVRTVLT--MEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEV 218
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSR----FPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
+MVVG +GKS L+N++ + +SR + +EK + G + G K+
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM---- 60
Query: 194 SIYVLDTPG 202
+ V+DTPG
Sbjct: 61 KLTVIDTPG 69
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 136 LLVMVVGVPNVGKSALINSIHQI-AL-SRFPVQEKTKRATVGPL 177
L V +VG+PNVGKS L N++ + AL + +P K V PL
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPL 45
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIY- 196
+++ G PNVGKS+ +N + + + TK VG H+ + Y
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFD------------HKLNKYQ 79
Query: 197 VLDTPGVL 204
++DTPG+L
Sbjct: 80 IIDTPGLL 87
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 136 LLVMVVGVPNVGKSALINSIHQI-AL-SRFPVQEKTKRATVGPL 177
L V +VG+PNVGKS L N++ + AL + +P K V PL
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPL 45
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYV 197
V VG NVGKS+L+N++ K A V PG T+ I + + + Y
Sbjct: 26 VAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVNSK--YYF 72
Query: 198 LDTPG 202
+D PG
Sbjct: 73 VDLPG 77
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRF-PVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
++ V+V+G VGKS+ +NS+ + R P Q + R + V++ + GF
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-----VSRTMGGF------ 84
Query: 194 SIYVLDTPGVL 204
+I ++DTPG++
Sbjct: 85 TINIIDTPGLV 95
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRF-PVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
++ V+V+G VGKS+ +NS+ + R P Q + R + V++ + GF
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-----VSRTMGGF------ 84
Query: 194 SIYVLDTPGVL 204
+I ++DTPG++
Sbjct: 85 TINIIDTPGLV 95
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRF-PVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
++ V+V+G VGKS+ +NS+ + R P Q + R + V++ + GF
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-----VSRTMGGF------ 84
Query: 194 SIYVLDTPGVL 204
+I ++DTPG++
Sbjct: 85 TINIIDTPGLV 95
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 135 TLLVMVVGVPNVGKSALINSIHQIALSRF-PVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193
++ V+V+G VGKS+ +NS+ + R P Q + R + V++ + GF
Sbjct: 35 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-----VSRTMGGF------ 83
Query: 194 SIYVLDTPGVL 204
+I ++DTPG++
Sbjct: 84 TINIIDTPGLV 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,305,574
Number of Sequences: 62578
Number of extensions: 396775
Number of successful extensions: 1219
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 37
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)