Query 017187
Match_columns 375
No_of_seqs 360 out of 3149
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2485 Conserved ATP/GTP bind 100.0 3.2E-55 7E-60 408.2 25.0 313 1-370 3-325 (335)
2 PRK09563 rbgA GTPase YlqF; Rev 100.0 2E-53 4.3E-58 407.3 29.7 276 24-373 3-285 (287)
3 TIGR03596 GTPase_YlqF ribosome 100.0 1.2E-52 2.7E-57 399.7 29.0 269 25-366 1-276 (276)
4 COG1161 Predicted GTPases [Gen 100.0 5.3E-44 1.2E-48 346.5 25.2 278 23-369 12-299 (322)
5 KOG2484 GTPase [General functi 100.0 1.6E-39 3.5E-44 310.9 19.4 263 25-368 126-406 (435)
6 KOG2423 Nucleolar GTPase [Gene 100.0 4.9E-34 1.1E-38 272.0 18.4 256 30-367 198-460 (572)
7 KOG1424 Predicted GTP-binding 100.0 3.5E-32 7.6E-37 267.5 21.7 266 28-366 158-475 (562)
8 cd01856 YlqF YlqF. Proteins o 100.0 6.1E-32 1.3E-36 239.7 20.5 165 27-204 1-171 (171)
9 cd01858 NGP_1 NGP-1. Autoanti 100.0 6.6E-29 1.4E-33 217.1 16.9 151 39-203 2-157 (157)
10 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 1.1E-26 2.5E-31 199.5 16.6 136 36-206 2-141 (141)
11 cd04178 Nucleostemin_like Nucl 99.9 3.3E-26 7.3E-31 203.1 17.2 143 47-203 1-172 (172)
12 cd01849 YlqF_related_GTPase Yl 99.9 5.4E-25 1.2E-29 192.0 17.3 144 47-203 1-155 (155)
13 TIGR00157 ribosome small subun 99.9 4.6E-25 1E-29 206.6 14.2 187 41-253 32-240 (245)
14 cd01859 MJ1464 MJ1464. This f 99.9 3.6E-24 7.8E-29 186.6 18.8 147 41-203 8-156 (156)
15 cd01855 YqeH YqeH. YqeH is an 99.9 1.6E-24 3.6E-29 195.0 16.9 156 37-203 26-190 (190)
16 PRK12289 GTPase RsgA; Reviewed 99.9 1.8E-24 3.8E-29 211.7 15.8 172 41-237 85-278 (352)
17 PRK12288 GTPase RsgA; Reviewed 99.9 8.3E-24 1.8E-28 206.9 15.6 191 41-257 116-330 (347)
18 COG1160 Predicted GTPases [Gen 99.9 7.2E-23 1.6E-27 201.3 18.0 182 12-207 50-240 (444)
19 PRK13796 GTPase YqeH; Provisio 99.9 7.1E-23 1.5E-27 202.3 18.1 156 36-206 59-223 (365)
20 PRK00098 GTPase RsgA; Reviewed 99.9 4E-23 8.6E-28 198.9 12.3 146 40-210 75-233 (298)
21 TIGR03597 GTPase_YqeH ribosome 99.9 4.6E-22 1E-26 196.2 18.4 151 41-206 59-217 (360)
22 cd01854 YjeQ_engC YjeQ/EngC. 99.9 2.6E-22 5.6E-27 192.3 14.2 197 41-255 74-284 (287)
23 COG1162 Predicted GTPases [Gen 99.9 6.4E-22 1.4E-26 186.8 13.4 193 41-256 75-288 (301)
24 TIGR03594 GTPase_EngA ribosome 99.8 1.2E-18 2.6E-23 175.7 17.5 161 33-207 66-234 (429)
25 PRK03003 GTP-binding protein D 99.8 1.8E-18 3.8E-23 176.8 16.8 156 36-205 108-271 (472)
26 PRK00093 GTP-binding protein D 99.8 5E-18 1.1E-22 171.7 18.3 158 37-208 72-236 (435)
27 PRK01889 GTPase RsgA; Reviewed 99.8 4E-18 8.6E-23 167.9 15.1 198 42-259 109-321 (356)
28 PRK09518 bifunctional cytidyla 99.8 1.9E-17 4.1E-22 176.8 18.9 157 35-205 344-510 (712)
29 PF03193 DUF258: Protein of un 99.7 3.5E-17 7.6E-22 142.7 7.3 98 91-210 2-104 (161)
30 PF02421 FeoB_N: Ferrous iron 99.4 2.3E-13 5E-18 118.5 7.3 65 136-212 1-66 (156)
31 COG1159 Era GTPase [General fu 99.4 6.1E-14 1.3E-18 131.8 3.7 97 134-250 5-102 (298)
32 COG0486 ThdF Predicted GTPase 99.4 1.8E-13 3.8E-18 135.6 6.3 92 133-245 215-308 (454)
33 COG1084 Predicted GTPase [Gene 99.4 4.9E-13 1.1E-17 126.9 6.1 94 134-247 167-261 (346)
34 COG0218 Predicted GTPase [Gene 99.3 1.5E-11 3.3E-16 109.9 8.8 66 133-210 22-87 (200)
35 KOG1191 Mitochondrial GTPase [ 99.2 2E-11 4.4E-16 121.0 8.8 64 132-206 265-329 (531)
36 PF01926 MMR_HSR1: 50S ribosom 99.2 3.1E-11 6.7E-16 99.6 7.2 59 137-207 1-61 (116)
37 COG1160 Predicted GTPases [Gen 99.2 2.1E-11 4.5E-16 120.7 7.0 60 136-207 4-65 (444)
38 TIGR00436 era GTP-binding prot 99.1 2.1E-10 4.6E-15 109.0 8.1 59 137-206 2-61 (270)
39 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 4.9E-10 1.1E-14 101.3 8.0 62 136-208 1-64 (196)
40 cd01853 Toc34_like Toc34-like 99.0 1.4E-09 3.1E-14 102.1 9.5 65 132-207 28-93 (249)
41 KOG1423 Ras-like GTPase ERA [C 99.0 6.3E-10 1.4E-14 104.7 6.4 68 132-210 69-137 (379)
42 PRK12298 obgE GTPase CgtA; Rev 99.0 6.7E-10 1.5E-14 110.8 6.6 59 137-207 161-221 (390)
43 TIGR03156 GTP_HflX GTP-binding 98.9 3.3E-09 7.2E-14 104.5 9.0 60 134-205 188-249 (351)
44 TIGR00450 mnmE_trmE_thdF tRNA 98.9 5.7E-09 1.2E-13 105.8 10.7 63 133-206 201-264 (442)
45 PRK05291 trmE tRNA modificatio 98.9 4.6E-09 1E-13 106.8 10.1 62 133-206 213-276 (449)
46 COG0370 FeoB Fe2+ transport sy 98.9 4.6E-09 9.9E-14 108.6 9.6 65 135-212 3-69 (653)
47 PTZ00258 GTP-binding protein; 98.9 3.7E-09 8.1E-14 104.9 7.8 63 133-207 19-99 (390)
48 PRK00089 era GTPase Era; Revie 98.9 4.5E-09 9.8E-14 100.9 8.0 62 135-207 5-67 (292)
49 PF00009 GTP_EFTU: Elongation 98.9 7.9E-09 1.7E-13 92.7 8.8 119 8-127 51-187 (188)
50 cd01900 YchF YchF subfamily. 98.9 3.4E-09 7.4E-14 100.7 6.6 57 138-206 1-75 (274)
51 TIGR00991 3a0901s02IAP34 GTP-b 98.9 7.1E-09 1.5E-13 99.5 8.8 64 133-207 36-100 (313)
52 PRK09601 GTP-binding protein Y 98.9 6E-09 1.3E-13 102.4 8.1 59 136-206 3-79 (364)
53 PRK15494 era GTPase Era; Provi 98.8 7.9E-09 1.7E-13 101.5 8.5 62 134-207 51-114 (339)
54 PRK12299 obgE GTPase CgtA; Rev 98.8 4.7E-09 1E-13 102.8 6.8 58 137-206 160-219 (335)
55 TIGR00993 3a0901s04IAP86 chlor 98.8 1E-08 2.3E-13 106.1 9.3 65 134-209 117-182 (763)
56 COG1159 Era GTPase [General fu 98.8 2.7E-08 5.9E-13 93.9 11.2 113 13-128 53-173 (298)
57 PF05049 IIGP: Interferon-indu 98.8 6.4E-09 1.4E-13 102.3 7.3 87 115-210 17-103 (376)
58 TIGR03598 GTPase_YsxC ribosome 98.8 1E-08 2.2E-13 91.2 7.4 63 133-207 16-78 (179)
59 PRK04213 GTP-binding protein; 98.8 1.2E-08 2.6E-13 92.1 7.0 58 133-205 7-64 (201)
60 COG2262 HflX GTPases [General 98.8 8.4E-08 1.8E-12 94.1 13.2 132 16-157 242-379 (411)
61 PRK15467 ethanolamine utilizat 98.8 7.3E-08 1.6E-12 84.2 11.5 102 26-128 42-148 (158)
62 COG1163 DRG Predicted GTPase [ 98.8 2.2E-08 4.8E-13 95.3 8.7 64 133-208 61-125 (365)
63 PRK00454 engB GTP-binding prot 98.8 1.7E-08 3.8E-13 90.3 7.1 63 133-207 22-84 (196)
64 cd04164 trmE TrmE (MnmE, ThdF, 98.8 1.9E-08 4.2E-13 85.9 7.0 62 135-207 1-63 (157)
65 cd01898 Obg Obg subfamily. Th 98.8 1.2E-08 2.5E-13 89.0 5.7 57 137-205 2-60 (170)
66 PRK12297 obgE GTPase CgtA; Rev 98.7 1.5E-08 3.2E-13 102.0 7.0 57 137-205 160-218 (424)
67 TIGR03156 GTP_HflX GTP-binding 98.7 7.6E-08 1.7E-12 94.9 11.9 102 20-125 243-350 (351)
68 PRK11058 GTPase HflX; Provisio 98.7 2.5E-08 5.3E-13 100.7 8.4 58 136-205 198-257 (426)
69 PF04548 AIG1: AIG1 family; I 98.7 1.6E-08 3.6E-13 92.7 6.2 65 136-211 1-67 (212)
70 PRK12296 obgE GTPase CgtA; Rev 98.7 1.6E-08 3.5E-13 103.2 6.3 59 136-206 160-219 (500)
71 KOG1490 GTP-binding protein CR 98.7 1.1E-08 2.4E-13 101.9 4.7 96 134-249 167-263 (620)
72 TIGR02729 Obg_CgtA Obg family 98.7 2E-08 4.4E-13 98.1 6.3 59 136-206 158-218 (329)
73 PF10662 PduV-EutP: Ethanolami 98.7 1E-07 2.2E-12 81.7 9.8 82 41-123 59-142 (143)
74 COG3596 Predicted GTPase [Gene 98.7 8.5E-08 1.8E-12 89.6 9.9 68 132-210 36-104 (296)
75 COG0486 ThdF Predicted GTPase 98.7 1.5E-07 3.4E-12 93.7 12.1 112 14-128 264-377 (454)
76 cd01888 eIF2_gamma eIF2-gamma 98.7 1.4E-07 3E-12 85.8 10.9 103 25-128 87-200 (203)
77 TIGR00436 era GTP-binding prot 98.7 2.4E-07 5.3E-12 88.0 13.0 91 37-128 71-165 (270)
78 TIGR02528 EutP ethanolamine ut 98.7 2.2E-07 4.8E-12 78.8 11.4 97 25-122 39-140 (142)
79 KOG1489 Predicted GTP-binding 98.7 4.7E-09 1E-13 99.4 1.1 103 136-260 197-303 (366)
80 cd01897 NOG NOG1 is a nucleola 98.7 4.3E-08 9.4E-13 85.3 6.5 57 137-205 2-59 (168)
81 cd01878 HflX HflX subfamily. 98.7 3.3E-07 7.1E-12 82.9 12.4 91 32-125 107-203 (204)
82 cd01889 SelB_euk SelB subfamil 98.7 2.1E-07 4.4E-12 83.7 10.8 101 26-127 73-186 (192)
83 PRK09554 feoB ferrous iron tra 98.6 5E-08 1.1E-12 105.0 7.8 61 135-207 3-64 (772)
84 cd01878 HflX HflX subfamily. 98.6 1E-07 2.3E-12 86.2 8.6 61 133-205 39-101 (204)
85 cd04165 GTPBP1_like GTPBP1-lik 98.6 1.8E-07 3.8E-12 86.7 9.9 99 25-124 88-220 (224)
86 cd04171 SelB SelB subfamily. 98.6 2E-07 4.3E-12 80.4 9.7 98 26-124 56-163 (164)
87 cd01890 LepA LepA subfamily. 98.6 2.8E-07 6E-12 81.2 10.6 100 27-127 73-177 (179)
88 cd01894 EngA1 EngA1 subfamily. 98.6 7.1E-07 1.5E-11 76.2 12.9 85 38-125 69-156 (157)
89 cd04163 Era Era subfamily. Er 98.6 9.4E-08 2E-12 81.9 7.3 62 135-207 3-65 (168)
90 KOG1249 Predicted GTPases [Gen 98.6 1E-07 2.2E-12 95.8 8.4 167 18-190 73-268 (572)
91 cd01895 EngA2 EngA2 subfamily. 98.6 8E-08 1.7E-12 83.2 6.8 61 135-206 2-63 (174)
92 PRK03003 GTP-binding protein D 98.6 7E-08 1.5E-12 98.9 7.0 59 135-204 38-97 (472)
93 cd01879 FeoB Ferrous iron tran 98.6 8.4E-08 1.8E-12 82.3 6.4 56 140-208 1-58 (158)
94 PTZ00327 eukaryotic translatio 98.6 3.9E-07 8.4E-12 92.8 12.0 103 25-128 121-234 (460)
95 cd01894 EngA1 EngA1 subfamily. 98.6 6.2E-08 1.3E-12 82.8 5.4 57 139-206 1-58 (157)
96 cd01896 DRG The developmentall 98.6 8.8E-08 1.9E-12 89.2 6.7 58 137-206 2-60 (233)
97 cd04104 p47_IIGP_like p47 (47- 98.6 1.4E-07 2.9E-12 85.5 7.0 67 135-208 1-67 (197)
98 cd01881 Obg_like The Obg-like 98.6 7.3E-08 1.6E-12 84.3 4.8 54 140-205 1-56 (176)
99 PRK09866 hypothetical protein; 98.5 9.5E-07 2.1E-11 91.6 13.2 110 13-125 229-351 (741)
100 PRK09602 translation-associate 98.5 1.3E-07 2.8E-12 94.6 6.7 59 136-206 2-85 (396)
101 PRK09518 bifunctional cytidyla 98.5 1.4E-07 3.1E-12 101.3 7.3 59 136-205 276-335 (712)
102 cd04164 trmE TrmE (MnmE, ThdF, 98.5 1.1E-06 2.3E-11 75.0 11.2 87 35-126 70-156 (157)
103 cd00881 GTP_translation_factor 98.5 7.7E-07 1.7E-11 78.6 10.5 101 26-127 67-187 (189)
104 PRK15494 era GTPase Era; Provi 98.5 1.1E-06 2.4E-11 86.3 12.3 91 37-128 123-217 (339)
105 PRK00089 era GTPase Era; Revie 98.5 1.5E-06 3.3E-11 83.3 13.1 92 37-128 76-172 (292)
106 cd01851 GBP Guanylate-binding 98.5 3.2E-07 6.8E-12 85.0 7.6 68 134-210 6-77 (224)
107 cd01884 EF_Tu EF-Tu subfamily. 98.5 1.5E-06 3.3E-11 78.7 11.8 107 8-115 48-171 (195)
108 cd01898 Obg Obg subfamily. Th 98.5 5.1E-07 1.1E-11 78.6 8.3 101 25-125 52-169 (170)
109 cd04171 SelB SelB subfamily. 98.5 2.7E-07 5.9E-12 79.5 6.4 58 137-203 2-61 (164)
110 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 3.4E-07 7.4E-12 79.5 6.7 56 137-204 2-61 (168)
111 cd04163 Era Era subfamily. Er 98.5 3.4E-06 7.5E-11 72.1 12.8 88 38-125 75-167 (168)
112 cd01895 EngA2 EngA2 subfamily. 98.5 1.6E-06 3.6E-11 74.9 10.8 87 39-125 78-173 (174)
113 PRK12296 obgE GTPase CgtA; Rev 98.5 9.2E-07 2E-11 90.5 10.5 104 25-128 210-341 (500)
114 cd01876 YihA_EngB The YihA (En 98.5 3E-07 6.4E-12 79.1 6.0 57 138-206 2-58 (170)
115 PRK10512 selenocysteinyl-tRNA- 98.5 1.4E-06 3E-11 92.0 12.0 103 25-128 55-167 (614)
116 cd01899 Ygr210 Ygr210 subfamil 98.5 2.5E-07 5.5E-12 89.9 6.1 57 138-206 1-82 (318)
117 TIGR00231 small_GTP small GTP- 98.4 5.2E-07 1.1E-11 76.2 7.3 57 136-204 2-61 (161)
118 COG0536 Obg Predicted GTPase [ 98.4 2.2E-07 4.7E-12 89.2 5.0 59 137-207 161-221 (369)
119 PRK11058 GTPase HflX; Provisio 98.4 2.7E-06 5.8E-11 86.0 12.7 111 15-128 246-363 (426)
120 TIGR03680 eif2g_arch translati 98.4 3.3E-06 7E-11 85.1 13.0 116 25-141 84-211 (406)
121 PRK04000 translation initiatio 98.4 2.9E-06 6.2E-11 85.6 12.3 116 25-141 89-216 (411)
122 cd01861 Rab6 Rab6 subfamily. 98.4 8.1E-07 1.7E-11 76.6 7.1 55 137-203 2-59 (161)
123 TIGR03594 GTPase_EngA ribosome 98.4 1.9E-06 4.2E-11 87.0 10.9 92 37-128 246-345 (429)
124 TIGR02729 Obg_CgtA Obg family 98.4 1.1E-06 2.4E-11 85.9 8.8 102 25-126 209-328 (329)
125 cd00880 Era_like Era (E. coli 98.4 4E-06 8.7E-11 70.6 11.2 89 37-125 67-162 (163)
126 PRK12299 obgE GTPase CgtA; Rev 98.4 1.7E-06 3.7E-11 84.8 10.0 92 37-128 228-329 (335)
127 TIGR00475 selB selenocysteine- 98.4 2.4E-06 5.1E-11 89.8 11.6 103 25-128 54-167 (581)
128 cd04160 Arfrp1 Arfrp1 subfamil 98.4 1E-06 2.2E-11 76.5 7.4 96 27-123 56-165 (167)
129 KOG1547 Septin CDC10 and relat 98.3 2.3E-06 4.9E-11 78.5 9.2 87 113-206 27-117 (336)
130 PRK00093 GTP-binding protein D 98.3 3.4E-06 7.4E-11 85.5 11.2 91 38-128 248-345 (435)
131 PRK05291 trmE tRNA modificatio 98.3 3.7E-06 8E-11 85.7 11.4 87 35-127 284-370 (449)
132 PRK12736 elongation factor Tu; 98.3 9.2E-06 2E-10 81.5 14.1 134 7-141 57-216 (394)
133 cd04154 Arl2 Arl2 subfamily. 98.3 1.6E-06 3.4E-11 76.3 7.5 96 27-123 64-171 (173)
134 cd00880 Era_like Era (E. coli 98.3 1.9E-06 4E-11 72.7 7.5 60 140-210 1-62 (163)
135 cd04124 RabL2 RabL2 subfamily. 98.3 3.3E-06 7.2E-11 73.4 9.3 99 27-127 55-158 (161)
136 cd01891 TypA_BipA TypA (tyrosi 98.3 4E-06 8.7E-11 75.4 9.9 91 26-117 70-172 (194)
137 cd04157 Arl6 Arl6 subfamily. 98.3 2.5E-06 5.5E-11 73.5 8.2 97 26-123 50-160 (162)
138 cd01850 CDC_Septin CDC/Septin. 98.3 1.9E-06 4E-11 82.4 8.0 24 134-157 3-26 (276)
139 KOG0462 Elongation factor-type 98.3 1.1E-06 2.3E-11 88.8 6.3 104 25-129 129-237 (650)
140 cd00154 Rab Rab family. Rab G 98.3 1.4E-06 3.1E-11 73.9 6.3 58 136-204 1-60 (159)
141 smart00178 SAR Sar1p-like memb 98.3 2.3E-06 4.9E-11 76.4 7.8 99 26-125 66-183 (184)
142 cd04149 Arf6 Arf6 subfamily. 98.3 2.5E-06 5.4E-11 75.0 7.9 96 27-123 59-166 (168)
143 cd01863 Rab18 Rab18 subfamily. 98.3 1.8E-06 3.9E-11 74.5 6.7 59 136-204 1-60 (161)
144 PRK05433 GTP-binding protein L 98.3 7.9E-06 1.7E-10 86.1 12.6 124 26-150 79-211 (600)
145 TIGR02034 CysN sulfate adenyly 98.3 9.7E-06 2.1E-10 81.6 12.7 110 7-117 62-187 (406)
146 cd01860 Rab5_related Rab5-rela 98.3 2.1E-06 4.6E-11 74.1 6.9 58 136-203 2-60 (163)
147 cd01897 NOG NOG1 is a nucleola 98.3 6.7E-06 1.4E-10 71.4 9.9 82 45-126 79-167 (168)
148 TIGR00437 feoB ferrous iron tr 98.2 2.3E-06 5.1E-11 89.9 8.1 54 142-207 1-55 (591)
149 COG2262 HflX GTPases [General 98.2 1.4E-06 3E-11 85.7 5.9 63 132-206 189-253 (411)
150 cd04155 Arl3 Arl3 subfamily. 98.2 2.3E-06 5E-11 74.8 6.8 58 133-204 12-69 (173)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 9.6E-06 2.1E-10 70.3 10.5 101 25-126 54-165 (168)
152 CHL00071 tufA elongation facto 98.2 1.1E-05 2.4E-10 81.4 12.3 133 9-142 59-227 (409)
153 TIGR01393 lepA GTP-binding pro 98.2 9.5E-06 2.1E-10 85.4 12.3 125 25-150 74-207 (595)
154 cd04158 ARD1 ARD1 subfamily. 98.2 2.7E-06 5.9E-11 74.6 7.0 101 27-128 49-162 (169)
155 cd04150 Arf1_5_like Arf1-Arf5- 98.2 4.1E-06 9E-11 72.8 8.1 95 28-123 51-157 (159)
156 cd04151 Arl1 Arl1 subfamily. 98.2 4.2E-06 9.2E-11 72.3 8.1 96 27-123 49-156 (158)
157 cd01866 Rab2 Rab2 subfamily. 98.2 2.7E-06 5.8E-11 74.4 6.9 58 135-203 4-63 (168)
158 cd04145 M_R_Ras_like M-Ras/R-R 98.2 4.9E-06 1.1E-10 71.8 8.4 98 27-125 56-162 (164)
159 PLN03118 Rab family protein; P 98.2 2.7E-06 5.9E-11 77.6 7.1 61 134-205 13-74 (211)
160 cd01879 FeoB Ferrous iron tran 98.2 4.1E-06 8.9E-11 71.7 7.9 81 44-125 73-155 (158)
161 smart00175 RAB Rab subfamily o 98.2 7.1E-06 1.5E-10 70.7 9.3 101 26-127 54-162 (164)
162 cd01862 Rab7 Rab7 subfamily. 98.2 7.6E-06 1.7E-10 71.2 9.6 101 27-128 55-168 (172)
163 cd04166 CysN_ATPS CysN_ATPS su 98.2 1.1E-06 2.4E-11 80.2 4.4 68 137-204 1-88 (208)
164 PRK12298 obgE GTPase CgtA; Rev 98.2 4.6E-06 1E-10 83.4 9.0 92 37-128 229-334 (390)
165 cd04119 RJL RJL (RabJ-Like) su 98.2 3E-06 6.5E-11 73.1 6.8 22 136-157 1-22 (168)
166 cd01868 Rab11_like Rab11-like. 98.2 3.8E-06 8.2E-11 72.9 7.3 60 135-204 3-63 (165)
167 cd04156 ARLTS1 ARLTS1 subfamil 98.2 4.6E-06 1E-10 71.9 7.7 96 27-123 50-158 (160)
168 PLN00223 ADP-ribosylation fact 98.2 6.5E-06 1.4E-10 73.4 8.8 99 28-127 68-178 (181)
169 cd04154 Arl2 Arl2 subfamily. 98.2 2.7E-06 5.8E-11 74.8 6.2 58 133-204 12-69 (173)
170 smart00175 RAB Rab subfamily o 98.2 4.4E-06 9.4E-11 72.0 7.2 22 136-157 1-22 (164)
171 cd04139 RalA_RalB RalA/RalB su 98.2 9.4E-06 2E-10 69.8 9.3 99 27-126 54-161 (164)
172 PRK12735 elongation factor Tu; 98.2 2.1E-05 4.5E-10 79.0 12.9 135 7-142 57-219 (396)
173 TIGR00485 EF-Tu translation el 98.2 2.3E-05 5E-10 78.6 13.0 120 6-126 56-200 (394)
174 TIGR00483 EF-1_alpha translati 98.2 1.4E-05 2.9E-10 81.1 11.5 109 8-117 68-197 (426)
175 KOG1489 Predicted GTP-binding 98.2 2.8E-06 6.1E-11 80.8 6.0 98 25-125 248-365 (366)
176 COG0481 LepA Membrane GTPase L 98.2 3.5E-06 7.6E-11 83.9 6.9 162 26-209 81-250 (603)
177 PRK13768 GTPase; Provisional 98.2 7.9E-06 1.7E-10 77.1 9.1 91 37-127 118-247 (253)
178 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 9.2E-06 2E-10 70.6 8.9 99 27-126 57-163 (166)
179 smart00177 ARF ARF-like small 98.2 5.9E-06 1.3E-10 73.1 7.8 99 27-126 63-173 (175)
180 cd01881 Obg_like The Obg-like 98.2 5.4E-06 1.2E-10 72.3 7.2 100 25-124 48-174 (176)
181 cd00879 Sar1 Sar1 subfamily. 98.2 6.8E-06 1.5E-10 73.2 7.9 98 27-125 69-189 (190)
182 PLN03127 Elongation factor Tu; 98.1 1.7E-05 3.6E-10 80.8 11.6 120 7-127 106-252 (447)
183 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.1 6.7E-06 1.5E-10 72.5 7.7 95 28-123 66-172 (174)
184 PRK12297 obgE GTPase CgtA; Rev 98.1 8.3E-06 1.8E-10 82.2 9.2 89 38-128 229-328 (424)
185 PRK00049 elongation factor Tu; 98.1 2.9E-05 6.4E-10 77.9 13.2 135 7-142 57-219 (396)
186 cd00878 Arf_Arl Arf (ADP-ribos 98.1 8.5E-06 1.8E-10 70.1 8.1 97 27-124 49-157 (158)
187 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 1E-05 2.2E-10 72.0 8.8 100 28-128 59-171 (183)
188 cd04112 Rab26 Rab26 subfamily. 98.1 1.3E-05 2.8E-10 71.9 9.3 101 27-128 56-164 (191)
189 PRK12317 elongation factor 1-a 98.1 1.4E-05 3E-10 80.9 10.7 109 8-117 67-195 (425)
190 cd04119 RJL RJL (RabJ-Like) su 98.1 1.2E-05 2.6E-10 69.3 8.9 99 27-126 55-166 (168)
191 cd01867 Rab8_Rab10_Rab13_like 98.1 6.4E-06 1.4E-10 71.9 7.1 60 135-204 3-63 (167)
192 cd04113 Rab4 Rab4 subfamily. 98.1 5.3E-06 1.1E-10 71.6 6.5 22 136-157 1-22 (161)
193 cd04159 Arl10_like Arl10-like 98.1 9.6E-06 2.1E-10 68.9 8.0 97 27-124 50-158 (159)
194 cd01865 Rab3 Rab3 subfamily. 98.1 1.7E-05 3.6E-10 69.1 9.6 98 27-127 56-163 (165)
195 PRK05124 cysN sulfate adenylyl 98.1 2.7E-05 5.9E-10 79.9 12.6 109 8-117 90-215 (474)
196 cd00881 GTP_translation_factor 98.1 3.5E-06 7.6E-11 74.3 5.3 21 137-157 1-21 (189)
197 cd04127 Rab27A Rab27a subfamil 98.1 1.4E-05 3.1E-10 70.3 9.2 99 27-126 69-176 (180)
198 cd01864 Rab19 Rab19 subfamily. 98.1 7.1E-06 1.5E-10 71.3 7.1 23 135-157 3-25 (165)
199 cd00154 Rab Rab family. Rab G 98.1 1.3E-05 2.7E-10 68.0 8.5 96 27-123 55-158 (159)
200 cd04145 M_R_Ras_like M-Ras/R-R 98.1 7E-06 1.5E-10 70.9 7.0 23 135-157 2-24 (164)
201 cd01883 EF1_alpha Eukaryotic e 98.1 2E-05 4.4E-10 72.5 10.3 91 25-116 81-194 (219)
202 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 8.1E-06 1.8E-10 70.9 7.2 22 136-157 3-24 (166)
203 cd01889 SelB_euk SelB subfamil 98.1 3.4E-06 7.4E-11 75.7 5.0 64 136-204 1-79 (192)
204 KOG2486 Predicted GTPase [Gene 98.1 4.9E-06 1.1E-10 77.9 6.0 63 133-207 134-197 (320)
205 cd04138 H_N_K_Ras_like H-Ras/N 98.1 1.3E-05 2.9E-10 68.6 8.4 98 27-125 55-160 (162)
206 COG0012 Predicted GTPase, prob 98.1 4.5E-06 9.7E-11 81.5 6.0 60 135-206 2-80 (372)
207 cd00877 Ran Ran (Ras-related n 98.1 1.1E-05 2.3E-10 70.7 7.9 87 41-127 68-159 (166)
208 PRK00454 engB GTP-binding prot 98.1 3.6E-05 7.9E-10 68.7 11.5 85 44-128 105-195 (196)
209 cd01861 Rab6 Rab6 subfamily. 98.1 1.1E-05 2.4E-10 69.4 7.9 98 27-125 55-160 (161)
210 cd04106 Rab23_lke Rab23-like s 98.1 1.6E-05 3.4E-10 68.6 8.7 95 27-124 57-160 (162)
211 PF00735 Septin: Septin; Inte 98.1 7.5E-06 1.6E-10 78.4 7.3 24 134-157 3-26 (281)
212 cd01864 Rab19 Rab19 subfamily. 98.1 2E-05 4.3E-10 68.5 9.4 99 26-125 57-164 (165)
213 smart00178 SAR Sar1p-like memb 98.1 1.1E-05 2.5E-10 71.9 8.0 58 133-204 15-72 (184)
214 PTZ00099 rab6; Provisional 98.1 1.5E-05 3.2E-10 71.0 8.6 101 27-128 35-143 (176)
215 cd04166 CysN_ATPS CysN_ATPS su 98.1 1.5E-05 3.2E-10 72.7 8.9 92 25-117 81-184 (208)
216 cd01862 Rab7 Rab7 subfamily. 98.1 7.5E-06 1.6E-10 71.2 6.6 22 136-157 1-22 (172)
217 smart00173 RAS Ras subfamily o 98.1 1.6E-05 3.5E-10 68.7 8.6 100 27-127 54-162 (164)
218 PLN00043 elongation factor 1-a 98.1 2.5E-05 5.5E-10 79.5 11.2 110 6-116 66-202 (447)
219 cd04110 Rab35 Rab35 subfamily. 98.1 1.7E-05 3.6E-10 71.7 8.9 101 26-127 60-167 (199)
220 TIGR01394 TypA_BipA GTP-bindin 98.1 3.3E-05 7.1E-10 81.3 12.3 123 26-149 69-217 (594)
221 PRK12317 elongation factor 1-a 98.1 5.3E-06 1.2E-10 84.0 6.2 72 133-204 4-95 (425)
222 KOG0460 Mitochondrial translat 98.1 1.1E-05 2.4E-10 77.5 7.8 121 7-128 99-246 (449)
223 cd04156 ARLTS1 ARLTS1 subfamil 98.1 6.8E-06 1.5E-10 70.8 6.0 55 137-204 1-55 (160)
224 cd04101 RabL4 RabL4 (Rab-like4 98.1 2.3E-05 5E-10 67.7 9.3 98 27-125 58-162 (164)
225 PTZ00133 ADP-ribosylation fact 98.1 2E-05 4.2E-10 70.3 9.0 100 28-128 68-179 (182)
226 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.9E-05 4.2E-10 71.3 9.1 101 27-128 56-169 (201)
227 PF00350 Dynamin_N: Dynamin fa 98.1 1E-05 2.2E-10 70.6 6.8 20 138-157 1-20 (168)
228 PF02421 FeoB_N: Ferrous iron 98.1 2.5E-06 5.4E-11 74.4 2.9 77 44-122 77-156 (156)
229 cd04160 Arfrp1 Arfrp1 subfamil 98.0 7E-06 1.5E-10 71.2 5.7 60 137-205 1-62 (167)
230 cd04138 H_N_K_Ras_like H-Ras/N 98.0 1.1E-05 2.4E-10 69.1 6.8 22 136-157 2-23 (162)
231 cd01860 Rab5_related Rab5-rela 98.0 2.7E-05 5.8E-10 67.2 9.2 99 27-126 56-162 (163)
232 cd04146 RERG_RasL11_like RERG/ 98.0 1E-05 2.2E-10 70.4 6.5 100 27-126 53-163 (165)
233 cd04113 Rab4 Rab4 subfamily. 98.0 2.3E-05 4.9E-10 67.6 8.7 97 27-124 55-159 (161)
234 COG4917 EutP Ethanolamine util 98.0 5.3E-05 1.1E-09 62.9 10.2 87 37-124 56-143 (148)
235 TIGR00092 GTP-binding protein 98.0 6.9E-06 1.5E-10 81.0 5.9 60 136-206 3-80 (368)
236 cd01867 Rab8_Rab10_Rab13_like 98.0 3.6E-05 7.7E-10 67.2 9.9 97 27-126 58-164 (167)
237 cd01865 Rab3 Rab3 subfamily. 98.0 1.2E-05 2.6E-10 70.0 6.8 22 136-157 2-23 (165)
238 cd04121 Rab40 Rab40 subfamily. 98.0 2.2E-05 4.7E-10 70.7 8.7 99 28-127 62-167 (189)
239 cd00878 Arf_Arl Arf (ADP-ribos 98.0 7.7E-06 1.7E-10 70.4 5.5 55 137-205 1-55 (158)
240 PRK15467 ethanolamine utilizat 98.0 6.9E-06 1.5E-10 71.7 5.2 21 137-157 3-23 (158)
241 cd01866 Rab2 Rab2 subfamily. 98.0 3.3E-05 7.2E-10 67.5 9.6 99 27-126 59-165 (168)
242 cd04123 Rab21 Rab21 subfamily. 98.0 3E-05 6.4E-10 66.4 9.1 98 27-125 55-160 (162)
243 cd04122 Rab14 Rab14 subfamily. 98.0 2.6E-05 5.6E-10 67.9 8.8 99 27-126 57-163 (166)
244 TIGR02836 spore_IV_A stage IV 98.0 1.7E-05 3.7E-10 78.7 8.4 75 133-207 15-105 (492)
245 cd04106 Rab23_lke Rab23-like s 98.0 1.3E-05 2.8E-10 69.1 6.8 22 136-157 1-22 (162)
246 cd04118 Rab24 Rab24 subfamily. 98.0 1.1E-05 2.4E-10 72.1 6.5 22 136-157 1-22 (193)
247 COG0050 TufB GTPases - transla 98.0 3.2E-05 7E-10 73.0 9.7 119 8-128 58-202 (394)
248 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.0 1.3E-05 2.9E-10 70.6 7.0 57 134-204 14-70 (174)
249 PF00025 Arf: ADP-ribosylation 98.0 6.6E-06 1.4E-10 73.0 5.0 85 41-125 77-174 (175)
250 TIGR03598 GTPase_YsxC ribosome 98.0 2.7E-05 5.9E-10 69.0 8.9 71 45-115 100-178 (179)
251 cd04109 Rab28 Rab28 subfamily. 98.0 2.9E-05 6.3E-10 71.0 9.3 102 26-128 55-167 (215)
252 cd04114 Rab30 Rab30 subfamily. 98.0 2.5E-05 5.5E-10 67.8 8.5 98 27-125 62-167 (169)
253 cd01893 Miro1 Miro1 subfamily. 98.0 1.9E-05 4.1E-10 68.9 7.7 99 27-126 53-163 (166)
254 cd04159 Arl10_like Arl10-like 98.0 1E-05 2.2E-10 68.8 5.8 20 138-157 2-21 (159)
255 cd01891 TypA_BipA TypA (tyrosi 98.0 1.1E-05 2.4E-10 72.5 6.2 69 137-205 4-77 (194)
256 cd01868 Rab11_like Rab11-like. 98.0 3.3E-05 7.2E-10 66.9 9.0 98 27-125 58-163 (165)
257 TIGR00450 mnmE_trmE_thdF tRNA 98.0 6.3E-05 1.4E-09 76.5 12.4 89 35-128 272-361 (442)
258 cd04157 Arl6 Arl6 subfamily. 98.0 9E-06 1.9E-10 70.0 5.3 56 137-204 1-56 (162)
259 cd01892 Miro2 Miro2 subfamily. 98.0 7.5E-06 1.6E-10 72.0 4.9 86 41-126 73-165 (169)
260 cd00876 Ras Ras family. The R 98.0 3.5E-05 7.7E-10 65.8 9.0 99 26-125 52-159 (160)
261 cd04116 Rab9 Rab9 subfamily. 98.0 1.6E-05 3.4E-10 69.4 6.9 24 134-157 4-27 (170)
262 smart00173 RAS Ras subfamily o 98.0 1.2E-05 2.6E-10 69.6 6.0 21 137-157 2-22 (164)
263 cd04142 RRP22 RRP22 subfamily. 98.0 1.2E-05 2.5E-10 73.0 6.2 58 136-205 1-61 (198)
264 cd04140 ARHI_like ARHI subfami 98.0 1.2E-05 2.7E-10 69.9 6.1 22 136-157 2-23 (165)
265 KOG1491 Predicted GTP-binding 98.0 9.4E-06 2E-10 77.9 5.6 61 134-206 19-97 (391)
266 PRK04213 GTP-binding protein; 98.0 4.5E-05 9.7E-10 68.7 9.9 86 42-128 87-193 (201)
267 cd01863 Rab18 Rab18 subfamily. 98.0 2.9E-05 6.3E-10 66.9 8.3 98 27-125 55-160 (161)
268 cd04123 Rab21 Rab21 subfamily. 98.0 1.9E-05 4E-10 67.7 7.0 22 136-157 1-22 (162)
269 cd01876 YihA_EngB The YihA (En 98.0 7.7E-05 1.7E-09 63.9 10.9 83 43-125 79-169 (170)
270 cd04124 RabL2 RabL2 subfamily. 98.0 1.5E-05 3.3E-10 69.2 6.5 22 136-157 1-22 (161)
271 PRK05506 bifunctional sulfate 98.0 7.4E-05 1.6E-09 79.5 12.9 92 25-117 108-211 (632)
272 cd00879 Sar1 Sar1 subfamily. 98.0 3E-05 6.5E-10 69.1 8.5 25 133-157 17-41 (190)
273 cd04175 Rap1 Rap1 subgroup. T 98.0 1.6E-05 3.4E-10 68.9 6.5 22 136-157 2-23 (164)
274 PTZ00141 elongation factor 1- 98.0 4.2E-05 9.1E-10 77.9 10.5 109 7-116 67-202 (446)
275 cd04147 Ras_dva Ras-dva subfam 98.0 3.6E-05 7.7E-10 69.5 8.9 98 27-126 53-162 (198)
276 cd00157 Rho Rho (Ras homology) 98.0 2E-05 4.4E-10 68.4 7.0 22 136-157 1-22 (171)
277 PTZ00369 Ras-like protein; Pro 98.0 3.1E-05 6.6E-10 69.3 8.1 101 27-128 59-168 (189)
278 cd04149 Arf6 Arf6 subfamily. 98.0 1.8E-05 3.9E-10 69.5 6.5 57 134-204 8-64 (168)
279 cd04112 Rab26 Rab26 subfamily. 98.0 1.9E-05 4.1E-10 70.8 6.7 22 136-157 1-22 (191)
280 cd04139 RalA_RalB RalA/RalB su 98.0 1.7E-05 3.6E-10 68.3 6.2 21 137-157 2-22 (164)
281 PRK10218 GTP-binding protein; 97.9 5.8E-05 1.3E-09 79.5 11.3 124 25-149 72-221 (607)
282 smart00176 RAN Ran (Ras-relate 97.9 3.1E-05 6.6E-10 70.5 8.1 100 27-127 50-154 (200)
283 cd04136 Rap_like Rap-like subf 97.9 1.9E-05 4.1E-10 68.1 6.4 22 136-157 2-23 (163)
284 COG0532 InfB Translation initi 97.9 4.4E-05 9.5E-10 77.5 9.7 98 25-125 59-168 (509)
285 cd04122 Rab14 Rab14 subfamily. 97.9 2.2E-05 4.8E-10 68.3 6.8 22 136-157 3-24 (166)
286 cd04115 Rab33B_Rab33A Rab33B/R 97.9 2.5E-05 5.4E-10 68.4 7.1 23 135-157 2-24 (170)
287 cd04161 Arl2l1_Arl13_like Arl2 97.9 2.7E-05 5.8E-10 68.2 7.3 97 26-123 48-165 (167)
288 cd04125 RabA_like RabA-like su 97.9 2E-05 4.3E-10 70.3 6.5 22 136-157 1-22 (188)
289 cd04144 Ras2 Ras2 subfamily. 97.9 5.1E-05 1.1E-09 67.9 9.1 100 28-128 54-164 (190)
290 cd01884 EF_Tu EF-Tu subfamily. 97.9 2.2E-05 4.7E-10 71.2 6.7 66 135-204 2-76 (195)
291 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 5.1E-05 1.1E-09 66.8 9.0 101 27-128 55-166 (170)
292 cd04177 RSR1 RSR1 subgroup. R 97.9 2.2E-05 4.7E-10 68.6 6.5 22 136-157 2-23 (168)
293 COG5257 GCD11 Translation init 97.9 5.6E-05 1.2E-09 72.3 9.5 102 27-129 92-204 (415)
294 cd04101 RabL4 RabL4 (Rab-like4 97.9 2.9E-05 6.3E-10 67.1 7.2 22 136-157 1-22 (164)
295 cd04137 RheB Rheb (Ras Homolog 97.9 2E-05 4.4E-10 69.5 6.3 22 136-157 2-23 (180)
296 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.9 2.9E-05 6.2E-10 69.2 7.1 23 135-157 3-25 (183)
297 cd04114 Rab30 Rab30 subfamily. 97.9 2.9E-05 6.2E-10 67.5 7.0 24 134-157 6-29 (169)
298 cd04132 Rho4_like Rho4-like su 97.9 4.6E-05 1E-09 67.6 8.3 101 27-128 55-168 (187)
299 CHL00071 tufA elongation facto 97.9 3E-05 6.6E-10 78.1 7.8 72 132-204 9-86 (409)
300 cd04128 Spg1 Spg1p. Spg1p (se 97.9 4.2E-05 9.2E-10 68.3 7.9 88 41-128 68-167 (182)
301 PLN03126 Elongation factor Tu; 97.9 0.00016 3.5E-09 74.2 13.2 106 6-112 125-247 (478)
302 cd04175 Rap1 Rap1 subgroup. T 97.9 4.1E-05 9E-10 66.3 7.6 99 27-126 55-162 (164)
303 cd04118 Rab24 Rab24 subfamily. 97.9 4.8E-05 1E-09 68.0 8.2 99 28-128 57-167 (193)
304 TIGR00487 IF-2 translation ini 97.9 2.4E-05 5.2E-10 82.1 7.2 61 133-205 85-147 (587)
305 cd04155 Arl3 Arl3 subfamily. 97.9 5E-05 1.1E-09 66.3 8.1 96 27-123 64-171 (173)
306 cd04127 Rab27A Rab27a subfamil 97.9 2.9E-05 6.3E-10 68.4 6.6 24 134-157 3-26 (180)
307 KOG2655 Septin family protein 97.9 2.9E-05 6.4E-10 75.9 7.2 70 132-206 18-92 (366)
308 cd01890 LepA LepA subfamily. 97.9 1.6E-05 3.5E-10 69.9 4.9 21 137-157 2-22 (179)
309 TIGR02528 EutP ethanolamine ut 97.9 1.5E-05 3.2E-10 67.5 4.5 21 137-157 2-22 (142)
310 COG2229 Predicted GTPase [Gene 97.9 0.00013 2.7E-09 64.6 10.3 97 28-125 75-176 (187)
311 cd04136 Rap_like Rap-like subf 97.9 4.4E-05 9.6E-10 65.7 7.5 85 41-125 68-161 (163)
312 cd04110 Rab35 Rab35 subfamily. 97.9 3.3E-05 7.2E-10 69.8 6.9 24 134-157 5-28 (199)
313 PTZ00133 ADP-ribosylation fact 97.9 4.8E-05 1E-09 67.8 7.8 25 133-157 15-39 (182)
314 KOG1486 GTP-binding protein DR 97.9 2.5E-05 5.5E-10 72.2 6.0 63 133-207 60-123 (364)
315 PLN03118 Rab family protein; P 97.9 7.5E-05 1.6E-09 68.0 9.3 102 26-128 67-178 (211)
316 cd00882 Ras_like_GTPase Ras-li 97.9 6.4E-05 1.4E-09 62.3 8.1 97 26-123 50-156 (157)
317 CHL00189 infB translation init 97.9 9.2E-05 2E-09 79.3 11.1 100 26-126 300-409 (742)
318 cd00876 Ras Ras family. The R 97.9 2.2E-05 4.8E-10 67.1 5.3 21 137-157 1-21 (160)
319 cd00877 Ran Ran (Ras-related n 97.9 3.5E-05 7.5E-10 67.5 6.6 22 136-157 1-22 (166)
320 COG0218 Predicted GTPase [Gene 97.9 0.00018 3.9E-09 64.7 11.2 83 45-127 106-197 (200)
321 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.8 9E-05 1.9E-09 65.3 9.2 89 40-128 68-165 (172)
322 cd04120 Rab12 Rab12 subfamily. 97.8 8E-05 1.7E-09 67.8 9.0 99 28-127 56-163 (202)
323 PLN03071 GTP-binding nuclear p 97.8 3.6E-05 7.8E-10 70.8 6.8 98 28-127 69-172 (219)
324 COG2895 CysN GTPases - Sulfate 97.8 4.5E-05 9.7E-10 73.7 7.5 110 5-115 66-191 (431)
325 COG5019 CDC3 Septin family pro 97.8 4.5E-05 9.8E-10 74.2 7.6 27 132-158 20-46 (373)
326 cd04158 ARD1 ARD1 subfamily. 97.8 2.8E-05 6.1E-10 68.1 5.7 21 137-157 1-21 (169)
327 cd04161 Arl2l1_Arl13_like Arl2 97.8 3E-05 6.5E-10 67.9 5.9 53 137-203 1-53 (167)
328 cd04176 Rap2 Rap2 subgroup. T 97.8 3.7E-05 8E-10 66.5 6.4 22 136-157 2-23 (163)
329 cd04111 Rab39 Rab39 subfamily. 97.8 4.9E-05 1.1E-09 69.5 7.4 23 135-157 2-24 (211)
330 cd04151 Arl1 Arl1 subfamily. 97.8 3E-05 6.5E-10 66.9 5.7 21 137-157 1-21 (158)
331 cd04142 RRP22 RRP22 subfamily. 97.8 0.00016 3.4E-09 65.6 10.5 87 40-126 75-173 (198)
332 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 4.4E-05 9.5E-10 69.0 6.8 22 136-157 1-22 (201)
333 cd04109 Rab28 Rab28 subfamily. 97.8 5.2E-05 1.1E-09 69.4 7.3 22 136-157 1-22 (215)
334 cd04140 ARHI_like ARHI subfami 97.8 7E-05 1.5E-09 65.2 7.8 85 41-125 68-163 (165)
335 PRK05306 infB translation init 97.8 8.6E-05 1.9E-09 80.2 9.9 100 25-125 341-450 (787)
336 cd04132 Rho4_like Rho4-like su 97.8 4.1E-05 9E-10 68.0 6.4 22 136-157 1-22 (187)
337 cd01886 EF-G Elongation factor 97.8 3.7E-05 8E-10 73.2 6.4 67 137-205 1-76 (270)
338 cd01893 Miro1 Miro1 subfamily. 97.8 3.9E-05 8.4E-10 66.9 6.0 21 137-157 2-22 (166)
339 TIGR00487 IF-2 translation ini 97.8 7.6E-05 1.6E-09 78.4 9.1 99 25-124 139-247 (587)
340 PLN03108 Rab family protein; P 97.8 0.00015 3.4E-09 66.1 10.1 99 27-126 61-167 (210)
341 cd04135 Tc10 TC10 subfamily. 97.8 4.8E-05 1E-09 66.5 6.5 22 136-157 1-22 (174)
342 PLN03071 GTP-binding nuclear p 97.8 6.3E-05 1.4E-09 69.2 7.4 63 133-205 11-74 (219)
343 KOG1145 Mitochondrial translat 97.8 0.00016 3.5E-09 73.4 10.5 110 14-126 191-315 (683)
344 PLN03110 Rab GTPase; Provision 97.8 7.5E-05 1.6E-09 68.5 7.7 24 134-157 11-34 (216)
345 smart00174 RHO Rho (Ras homolo 97.8 4.7E-05 1E-09 66.5 5.8 20 138-157 1-20 (174)
346 cd04111 Rab39 Rab39 subfamily. 97.8 0.00013 2.9E-09 66.6 8.9 101 27-128 58-167 (211)
347 TIGR00231 small_GTP small GTP- 97.7 2.6E-05 5.7E-10 65.6 3.9 97 26-123 55-160 (161)
348 cd04108 Rab36_Rab34 Rab34/Rab3 97.7 8.3E-05 1.8E-09 65.4 7.3 21 137-157 2-22 (170)
349 cd04146 RERG_RasL11_like RERG/ 97.7 3.5E-05 7.7E-10 66.9 4.8 21 137-157 1-21 (165)
350 smart00177 ARF ARF-like small 97.7 6.6E-05 1.4E-09 66.4 6.6 57 134-204 12-68 (175)
351 cd04115 Rab33B_Rab33A Rab33B/R 97.7 0.00018 3.8E-09 63.0 9.2 99 27-125 57-167 (170)
352 cd04117 Rab15 Rab15 subfamily. 97.7 8.5E-05 1.8E-09 64.5 7.1 21 137-157 2-22 (161)
353 cd04137 RheB Rheb (Ras Homolog 97.7 0.00021 4.6E-09 62.9 9.6 103 25-128 53-164 (180)
354 cd04144 Ras2 Ras2 subfamily. 97.7 4.8E-05 1E-09 68.1 5.5 21 137-157 1-21 (190)
355 TIGR00437 feoB ferrous iron tr 97.7 0.00014 3E-09 76.6 9.8 81 44-125 71-153 (591)
356 TIGR00491 aIF-2 translation in 97.7 0.00025 5.3E-09 74.6 11.5 99 26-125 74-214 (590)
357 cd04148 RGK RGK subfamily. Th 97.7 6E-05 1.3E-09 69.5 6.2 22 136-157 1-22 (221)
358 cd04148 RGK RGK subfamily. Th 97.7 0.00011 2.3E-09 67.8 7.9 98 28-128 57-164 (221)
359 PLN03108 Rab family protein; P 97.7 8.1E-05 1.8E-09 67.9 7.0 24 134-157 5-28 (210)
360 KOG1423 Ras-like GTPase ERA [C 97.7 0.00022 4.8E-09 67.8 9.8 114 15-128 121-272 (379)
361 TIGR00491 aIF-2 translation in 97.7 5.8E-05 1.3E-09 79.2 6.4 23 135-157 4-26 (590)
362 smart00174 RHO Rho (Ras homolo 97.7 9.8E-05 2.1E-09 64.5 6.9 86 41-126 65-171 (174)
363 COG0536 Obg Predicted GTPase [ 97.7 9.4E-05 2E-09 71.4 7.2 90 38-128 230-334 (369)
364 cd04150 Arf1_5_like Arf1-Arf5- 97.7 8E-05 1.7E-09 64.7 6.3 22 136-157 1-22 (159)
365 cd04130 Wrch_1 Wrch-1 subfamil 97.7 8.5E-05 1.8E-09 65.2 6.5 95 28-123 55-170 (173)
366 cd00157 Rho Rho (Ras homology) 97.7 7.7E-05 1.7E-09 64.7 6.1 97 27-124 54-170 (171)
367 PRK12735 elongation factor Tu; 97.7 7.2E-05 1.6E-09 75.1 6.7 69 132-204 9-86 (396)
368 cd04162 Arl9_Arfrp2_like Arl9/ 97.7 8.2E-05 1.8E-09 65.0 6.3 95 28-123 51-162 (164)
369 KOG0075 GTP-binding ADP-ribosy 97.7 0.00041 8.9E-09 59.2 10.1 113 14-128 54-183 (186)
370 cd04125 RabA_like RabA-like su 97.7 0.00022 4.8E-09 63.5 9.1 101 27-128 55-163 (188)
371 cd04176 Rap2 Rap2 subgroup. T 97.7 9.6E-05 2.1E-09 63.8 6.5 85 41-125 68-161 (163)
372 PF08477 Miro: Miro-like prote 97.7 0.0001 2.2E-09 60.4 6.3 21 137-157 1-21 (119)
373 PTZ00369 Ras-like protein; Pro 97.7 7.8E-05 1.7E-09 66.7 6.1 24 134-157 4-27 (189)
374 COG5256 TEF1 Translation elong 97.7 0.0002 4.4E-09 70.7 9.2 113 4-117 64-201 (428)
375 PF10662 PduV-EutP: Ethanolami 97.7 5.3E-05 1.1E-09 65.0 4.6 21 137-157 3-23 (143)
376 CHL00189 infB translation init 97.7 5.7E-05 1.2E-09 80.9 5.9 60 133-204 242-306 (742)
377 PRK05306 infB translation init 97.7 7.9E-05 1.7E-09 80.5 6.9 61 133-205 288-349 (787)
378 cd04116 Rab9 Rab9 subfamily. 97.7 0.0003 6.4E-09 61.3 9.4 97 27-124 60-168 (170)
379 cd01870 RhoA_like RhoA-like su 97.6 0.00011 2.3E-09 64.3 6.3 22 136-157 2-23 (175)
380 cd04126 Rab20 Rab20 subfamily. 97.6 0.00018 3.8E-09 66.5 8.0 100 28-128 51-191 (220)
381 PLN03127 Elongation factor Tu; 97.6 0.00012 2.5E-09 74.7 7.3 69 132-204 58-135 (447)
382 PRK14845 translation initiatio 97.6 0.00029 6.3E-09 78.0 10.6 101 25-126 530-672 (1049)
383 cd01873 RhoBTB RhoBTB subfamil 97.6 0.00015 3.3E-09 65.6 7.1 84 41-124 83-193 (195)
384 PLN00223 ADP-ribosylation fact 97.6 0.00014 3.1E-09 64.7 6.8 57 133-203 15-71 (181)
385 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.6 0.00015 3.2E-09 64.0 6.8 23 135-157 2-24 (172)
386 cd04105 SR_beta Signal recogni 97.6 0.00014 3E-09 66.2 6.8 56 137-205 2-60 (203)
387 PRK00049 elongation factor Tu; 97.6 0.00011 2.4E-09 73.8 6.6 69 132-204 9-86 (396)
388 PRK05506 bifunctional sulfate 97.6 6.5E-05 1.4E-09 79.9 5.1 25 133-157 22-46 (632)
389 cd04117 Rab15 Rab15 subfamily. 97.6 0.00027 5.8E-09 61.4 8.1 96 28-124 56-159 (161)
390 PRK04004 translation initiatio 97.6 0.00048 1E-08 72.5 11.3 98 26-124 76-215 (586)
391 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.00011 2.4E-09 64.1 5.6 20 138-157 2-21 (164)
392 cd04143 Rhes_like Rhes_like su 97.6 0.00034 7.3E-09 65.7 9.1 85 42-126 68-170 (247)
393 PLN03110 Rab GTPase; Provision 97.6 0.00034 7.3E-09 64.2 8.8 100 28-128 68-175 (216)
394 cd04170 EF-G_bact Elongation f 97.6 0.00013 2.9E-09 69.1 6.2 21 137-157 1-21 (268)
395 KOG0076 GTP-binding ADP-ribosy 97.6 0.00012 2.7E-09 64.0 5.4 119 10-128 56-188 (197)
396 smart00053 DYNc Dynamin, GTPas 97.6 0.00053 1.1E-08 64.1 10.0 100 113-224 2-156 (240)
397 cd01874 Cdc42 Cdc42 subfamily. 97.6 0.0002 4.3E-09 63.4 6.8 22 136-157 2-23 (175)
398 cd00882 Ras_like_GTPase Ras-li 97.6 7.1E-05 1.5E-09 62.0 3.8 18 140-157 1-18 (157)
399 cd04130 Wrch_1 Wrch-1 subfamil 97.6 0.00021 4.6E-09 62.6 7.0 22 136-157 1-22 (173)
400 cd04126 Rab20 Rab20 subfamily. 97.5 0.0002 4.3E-09 66.2 6.9 22 136-157 1-22 (220)
401 cd04133 Rop_like Rop subfamily 97.5 0.00023 4.9E-09 63.4 7.1 86 41-126 68-172 (176)
402 cd04177 RSR1 RSR1 subgroup. R 97.5 0.0003 6.6E-09 61.3 7.8 99 27-126 55-163 (168)
403 cd01871 Rac1_like Rac1-like su 97.5 0.00021 4.6E-09 63.1 6.7 84 41-124 68-172 (174)
404 cd04134 Rho3 Rho3 subfamily. 97.5 0.00021 4.5E-09 63.9 6.7 86 42-127 68-174 (189)
405 cd04135 Tc10 TC10 subfamily. 97.5 0.00023 5.1E-09 62.1 6.8 84 42-125 68-172 (174)
406 cd04168 TetM_like Tet(M)-like 97.5 0.00022 4.7E-09 66.6 6.9 21 137-157 1-21 (237)
407 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00025 5.5E-09 62.7 6.9 84 41-124 68-172 (175)
408 cd01886 EF-G Elongation factor 97.5 0.00039 8.4E-09 66.2 8.6 83 27-110 70-158 (270)
409 KOG0410 Predicted GTP binding 97.5 0.00019 4E-09 68.8 6.2 63 133-205 176-238 (410)
410 PRK09554 feoB ferrous iron tra 97.5 0.00033 7.2E-09 75.8 9.0 81 44-126 84-167 (772)
411 cd04147 Ras_dva Ras-dva subfam 97.5 0.00016 3.5E-09 65.2 5.5 21 137-157 1-21 (198)
412 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.5 0.00045 9.8E-09 64.3 8.6 86 41-126 80-187 (232)
413 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00024 5.3E-09 65.7 6.7 58 133-204 37-94 (225)
414 cd01871 Rac1_like Rac1-like su 97.5 0.00023 5.1E-09 62.8 6.2 22 136-157 2-23 (174)
415 PRK12736 elongation factor Tu; 97.5 0.00024 5.2E-09 71.3 7.0 69 132-204 9-86 (394)
416 COG3276 SelB Selenocysteine-sp 97.5 0.00069 1.5E-08 67.4 9.9 121 5-126 30-161 (447)
417 TIGR00485 EF-Tu translation el 97.5 0.00026 5.7E-09 71.0 7.1 73 132-204 9-86 (394)
418 cd04134 Rho3 Rho3 subfamily. 97.5 0.00028 6.1E-09 63.1 6.5 21 137-157 2-22 (189)
419 cd04131 Rnd Rnd subfamily. Th 97.5 0.00034 7.4E-09 62.2 7.0 22 136-157 2-23 (178)
420 PRK04004 translation initiatio 97.4 0.00025 5.5E-09 74.6 7.0 24 134-157 5-28 (586)
421 TIGR00484 EF-G translation elo 97.4 0.00022 4.7E-09 76.7 6.6 70 135-206 10-88 (689)
422 PF00009 GTP_EFTU: Elongation 97.4 0.00016 3.4E-09 64.7 4.7 70 135-204 3-81 (188)
423 cd01892 Miro2 Miro2 subfamily. 97.4 0.0004 8.8E-09 60.9 7.1 25 133-157 2-26 (169)
424 TIGR00475 selB selenocysteine- 97.4 0.00025 5.3E-09 74.7 6.6 59 136-203 1-60 (581)
425 cd01870 RhoA_like RhoA-like su 97.4 0.00047 1E-08 60.2 7.4 85 41-125 68-173 (175)
426 COG1100 GTPase SAR1 and relate 97.4 0.0003 6.5E-09 63.9 6.2 22 136-157 6-27 (219)
427 cd01875 RhoG RhoG subfamily. 97.4 0.00052 1.1E-08 61.6 7.6 98 28-127 58-177 (191)
428 COG1217 TypA Predicted membran 97.4 0.00094 2E-08 66.9 9.7 106 23-129 70-197 (603)
429 PF00071 Ras: Ras family; Int 97.4 0.00044 9.5E-09 59.5 6.7 21 137-157 1-21 (162)
430 cd04143 Rhes_like Rhes_like su 97.4 0.0003 6.4E-09 66.1 5.9 22 136-157 1-22 (247)
431 cd04169 RF3 RF3 subfamily. Pe 97.4 0.00042 9.1E-09 65.9 7.0 21 137-157 4-24 (267)
432 PTZ00132 GTP-binding nuclear p 97.4 0.00055 1.2E-08 62.5 7.4 25 133-157 7-31 (215)
433 PRK12739 elongation factor G; 97.4 0.0016 3.4E-08 70.2 11.9 79 8-87 56-140 (691)
434 PRK00007 elongation factor G; 97.4 0.00032 6.9E-09 75.4 6.5 69 135-205 10-87 (693)
435 cd04120 Rab12 Rab12 subfamily. 97.4 0.00044 9.6E-09 62.9 6.6 22 136-157 1-22 (202)
436 cd04131 Rnd Rnd subfamily. Th 97.3 0.00061 1.3E-08 60.6 7.1 84 41-124 68-173 (178)
437 cd01882 BMS1 Bms1. Bms1 is an 97.3 0.001 2.2E-08 61.5 8.9 83 26-112 88-181 (225)
438 PRK12739 elongation factor G; 97.3 0.00032 7E-09 75.4 6.2 65 134-205 7-85 (691)
439 cd04167 Snu114p Snu114p subfam 97.3 0.00084 1.8E-08 61.3 8.1 59 26-85 76-136 (213)
440 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.3 0.00074 1.6E-08 60.3 7.4 85 41-125 72-178 (182)
441 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.0006 1.3E-08 60.8 6.8 22 136-157 1-22 (182)
442 cd04169 RF3 RF3 subfamily. Pe 97.3 0.0017 3.7E-08 61.7 10.2 80 7-87 53-138 (267)
443 cd04103 Centaurin_gamma Centau 97.3 0.00068 1.5E-08 59.0 6.9 84 41-124 61-156 (158)
444 cd04121 Rab40 Rab40 subfamily. 97.3 0.00065 1.4E-08 61.1 6.9 24 134-157 5-28 (189)
445 cd01883 EF1_alpha Eukaryotic e 97.3 0.00023 5E-09 65.4 4.0 68 137-204 1-88 (219)
446 cd04168 TetM_like Tet(M)-like 97.3 0.0012 2.6E-08 61.6 8.5 59 27-86 70-130 (237)
447 PLN03126 Elongation factor Tu; 97.2 0.00079 1.7E-08 69.2 7.7 74 132-205 78-156 (478)
448 cd04129 Rho2 Rho2 subfamily. 97.2 0.00072 1.6E-08 60.3 6.5 22 136-157 2-23 (187)
449 cd01896 DRG The developmentall 97.2 0.0011 2.4E-08 61.7 7.8 49 73-126 177-225 (233)
450 KOG1191 Mitochondrial GTPase [ 97.2 0.00071 1.5E-08 68.2 6.6 95 32-126 335-449 (531)
451 cd04129 Rho2 Rho2 subfamily. 97.2 0.00076 1.6E-08 60.1 6.3 87 42-128 69-174 (187)
452 cd01885 EF2 EF2 (for archaea a 97.2 0.00084 1.8E-08 62.1 6.7 59 26-85 78-138 (222)
453 TIGR00483 EF-1_alpha translati 97.2 0.00072 1.6E-08 68.5 6.9 72 133-204 5-96 (426)
454 PRK10512 selenocysteinyl-tRNA- 97.2 0.00065 1.4E-08 71.9 6.5 58 137-203 2-61 (614)
455 KOG0461 Selenocysteine-specifi 97.2 0.004 8.7E-08 60.3 11.1 101 26-128 75-194 (522)
456 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.1 0.00089 1.9E-08 61.9 6.3 22 136-157 2-23 (222)
457 cd04167 Snu114p Snu114p subfam 97.1 0.00045 9.8E-09 63.1 4.3 21 137-157 2-22 (213)
458 cd04102 RabL3 RabL3 (Rab-like3 97.1 0.001 2.2E-08 60.6 6.4 22 136-157 1-22 (202)
459 PF00025 Arf: ADP-ribosylation 97.1 0.0011 2.5E-08 58.6 6.5 57 133-203 12-68 (175)
460 KOG1487 GTP-binding protein DR 97.1 0.00061 1.3E-08 63.5 4.6 60 136-207 60-120 (358)
461 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.1 0.0014 3.1E-08 58.5 6.9 25 133-157 3-27 (182)
462 PF09439 SRPRB: Signal recogni 97.1 0.00043 9.2E-09 61.9 3.4 58 136-205 4-61 (181)
463 PF00071 Ras: Ras family; Int 97.1 0.0013 2.8E-08 56.6 6.4 86 41-126 67-160 (162)
464 cd04133 Rop_like Rop subfamily 97.1 0.0013 2.9E-08 58.4 6.6 22 136-157 2-23 (176)
465 PRK05124 cysN sulfate adenylyl 97.1 0.00086 1.9E-08 68.9 5.9 25 133-157 25-49 (474)
466 PRK12740 elongation factor G; 97.1 0.0032 7E-08 67.5 10.5 60 26-86 65-126 (668)
467 PTZ00132 GTP-binding nuclear p 97.1 0.0028 6.1E-08 57.7 8.7 99 41-145 77-180 (215)
468 KOG0078 GTP-binding protein SE 97.1 0.0039 8.4E-08 56.4 9.2 102 26-127 65-174 (207)
469 PRK09435 membrane ATPase/prote 97.1 0.002 4.4E-08 63.0 8.1 84 42-128 166-261 (332)
470 PRK09866 hypothetical protein; 97.0 0.0012 2.7E-08 69.1 6.7 24 134-157 68-91 (741)
471 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.0 0.0015 3.2E-08 60.9 6.6 25 133-157 11-35 (232)
472 cd01875 RhoG RhoG subfamily. 97.0 0.002 4.3E-08 57.8 7.0 23 135-157 3-25 (191)
473 PRK00007 elongation factor G; 97.0 0.0024 5.2E-08 68.7 8.8 61 27-88 81-143 (693)
474 KOG0092 GTPase Rab5/YPT51 and 97.0 0.0012 2.6E-08 58.9 5.0 88 42-129 74-169 (200)
475 TIGR02034 CysN sulfate adenyly 96.9 0.001 2.3E-08 67.0 5.1 22 136-157 1-22 (406)
476 cd04170 EF-G_bact Elongation f 96.9 0.0084 1.8E-07 56.8 10.8 61 26-87 69-131 (268)
477 PRK00741 prfC peptide chain re 96.9 0.0042 9E-08 64.7 9.1 61 26-87 84-146 (526)
478 KOG0072 GTP-binding ADP-ribosy 96.9 0.0037 7.9E-08 53.4 7.0 88 41-128 81-180 (182)
479 cd01885 EF2 EF2 (for archaea a 96.9 0.0025 5.4E-08 58.9 6.5 21 137-157 2-22 (222)
480 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.8 0.0047 1E-07 57.1 8.1 85 41-125 68-174 (222)
481 PRK13351 elongation factor G; 96.8 0.0071 1.5E-07 65.1 10.5 60 27-87 79-140 (687)
482 COG0370 FeoB Fe2+ transport sy 96.8 0.00096 2.1E-08 69.8 3.6 82 44-127 80-164 (653)
483 cd04103 Centaurin_gamma Centau 96.8 0.0032 6.9E-08 54.7 6.3 22 136-157 1-22 (158)
484 TIGR01393 lepA GTP-binding pro 96.8 0.0026 5.7E-08 67.1 6.6 67 136-206 4-83 (595)
485 KOG0080 GTPase Rab18, small G 96.8 0.0045 9.7E-08 53.8 6.7 58 134-205 10-72 (209)
486 TIGR00484 EF-G translation elo 96.7 0.0039 8.4E-08 67.1 7.9 61 27-88 81-143 (689)
487 PF04670 Gtr1_RagA: Gtr1/RagA 96.7 0.0027 5.8E-08 59.1 5.7 59 137-206 1-61 (232)
488 cd01888 eIF2_gamma eIF2-gamma 96.7 0.0031 6.6E-08 57.2 6.0 23 136-158 1-23 (203)
489 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.7 0.0067 1.4E-07 54.4 7.5 90 39-128 88-186 (221)
490 KOG0410 Predicted GTP binding 96.7 0.0036 7.7E-08 60.3 6.2 105 16-128 228-342 (410)
491 TIGR00503 prfC peptide chain r 96.7 0.0071 1.5E-07 63.0 9.0 78 8-86 63-146 (527)
492 COG1084 Predicted GTPase [Gene 96.7 0.0026 5.6E-08 61.3 5.2 117 9-125 203-334 (346)
493 KOG1144 Translation initiation 96.7 0.01 2.2E-07 62.5 9.7 99 26-126 545-686 (1064)
494 PLN00023 GTP-binding protein; 96.7 0.0046 9.9E-08 60.2 6.9 25 133-157 19-43 (334)
495 TIGR00073 hypB hydrogenase acc 96.6 0.0066 1.4E-07 55.2 7.6 54 72-125 148-205 (207)
496 TIGR00101 ureG urease accessor 96.6 0.0064 1.4E-07 55.2 7.5 76 46-126 113-195 (199)
497 PRK10218 GTP-binding protein; 96.6 0.0051 1.1E-07 65.0 7.4 71 136-206 6-81 (607)
498 KOG0084 GTPase Rab1/YPT1, smal 96.6 0.011 2.5E-07 52.9 8.5 96 33-128 69-173 (205)
499 cd04105 SR_beta Signal recogni 96.6 0.0035 7.7E-08 56.9 5.4 63 26-89 53-126 (203)
500 KOG0073 GTP-binding ADP-ribosy 96.6 0.011 2.4E-07 51.6 8.0 101 27-127 65-178 (185)
No 1
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=3.2e-55 Score=408.22 Aligned_cols=313 Identities=42% Similarity=0.633 Sum_probs=257.2
Q ss_pred CchHHHHHhcccccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEE
Q 017187 1 MGLKRIIKKGLGLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALN 80 (375)
Q Consensus 1 ~~~~~~~~~~~~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlN 80 (375)
|..+|.+++++| +...+.....+++||||||++|++++++.++.+|+||||+|||+|++++|+.+.++...+|.|+|+|
T Consensus 3 ~~~~~s~~~~~~-~~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlN 81 (335)
T KOG2485|consen 3 TRKTWSIAREAG-DAVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLN 81 (335)
T ss_pred hhHHHHHHHHhh-hcccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEe
Confidence 457899999996 5555555567799999999999999999999999999999999999999999999988999999999
Q ss_pred cCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccC--HHHHHHHHHHHHhhh----hccCCceEEEEEcCCCCChHHHHH
Q 017187 81 KKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSS--VQKLLELVELKLKEV----ISREPTLLVMVVGVPNVGKSALIN 153 (375)
Q Consensus 81 K~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~g--vk~Ll~~L~~~l~~~----~~~~~~~~v~vvG~pnvGKSsliN 153 (375)
|+||+++...+..+++++..+. .++..+|....+ +..++..+.....++ +......++||+|.||||||||||
T Consensus 82 K~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLIN 161 (335)
T KOG2485|consen 82 KMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLIN 161 (335)
T ss_pred cccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHH
Confidence 9999998777888888874443 445556554332 555555444333332 335678999999999999999999
Q ss_pred HHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHH
Q 017187 154 SIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEER 232 (375)
Q Consensus 154 ~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~ 232 (375)
+++.. +.++.+.++||+.||+|+.++. +++...+.+|++||||+..|++.+.|.+++||+||+++++.++++.
T Consensus 162 a~r~~------~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~ 235 (335)
T KOG2485|consen 162 ALRNV------HLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEET 235 (335)
T ss_pred HHHHH------HhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHH
Confidence 99872 1234588999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCC
Q 017187 233 IAQYLLAVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGN 312 (375)
Q Consensus 233 ~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (375)
+|||+++++|.+..+.++..+... +.|+|+..+.+ ...++|+.+.++++.|+|+
T Consensus 236 ~adylL~~lN~~~~~~y~~~l~~~------------------------~~~~dd~~~nl--~~l~v~~~~~~k~s~fdg~ 289 (335)
T KOG2485|consen 236 IADYLLYLLNSHSDFSYVKDLKPG------------------------STPADDIEQNL--AVLAVRRTKNEKVSAFDGN 289 (335)
T ss_pred HHHHHHHHHhccCcchhHHHhccC------------------------CCccccHHHHH--HHHHHHHHhcceeeEecCC
Confidence 999999999999999877544332 12666665555 4789999999999999988
Q ss_pred --cCChhhHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccCCC
Q 017187 313 --VEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVPD 370 (375)
Q Consensus 313 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~~ 370 (375)
++.. .| .+..+|+.+++.||+|.+|.+.++..+.
T Consensus 290 ~~~ei~-------------------~~-----~~ln~~e~~l~~~rsg~l~~~~ln~~~~ 325 (335)
T KOG2485|consen 290 NKLEIE-------------------QP-----NLLNLARFFLATFRSGLLGPEELNYVIL 325 (335)
T ss_pred ceeEEe-------------------ch-----HHHHHHHHHHHHHHhccccceeecchhh
Confidence 4431 11 2678999999999999999887776543
No 2
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=2e-53 Score=407.26 Aligned_cols=276 Identities=38% Similarity=0.564 Sum_probs=234.0
Q ss_pred cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCc
Q 017187 24 NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQD 103 (375)
Q Consensus 24 ~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~ 103 (375)
+++||||||+++++++++.++++|+||+|+|+|.|.+++++.+.+...++|+++|+||+||+++...+.|.+++++.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 38999999999999999999999999999999999999998888876689999999999998776677899888655677
Q ss_pred EEEEecCCccCHHHHHHHHHHHHhhhhc-------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCC
Q 017187 104 YIAINAHSRSSVQKLLELVELKLKEVIS-------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP 176 (375)
Q Consensus 104 vi~iSa~~~~gvk~Ll~~L~~~l~~~~~-------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~ 176 (375)
++++|++++.|+++|++.+...+++... ....++++++|.||||||||||+|.+ .+.+.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~-----------~~~~~~~~ 151 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG-----------KKIAKTGN 151 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc-----------CCccccCC
Confidence 8999999999999999998887765311 24568999999999999999999997 46678999
Q ss_pred CCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187 177 LPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256 (375)
Q Consensus 177 ~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~ 256 (375)
.||+|++.+.+.+. .+++++||||+..|...+.+.+.++|++|+|+++.++.+++++|++++++.+.+.....
T Consensus 152 ~~g~T~~~~~~~~~--~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~----- 224 (287)
T PRK09563 152 RPGVTKAQQWIKLG--KGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKE----- 224 (287)
T ss_pred CCCeEEEEEEEEeC--CcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHH-----
Confidence 99999999987665 35999999999999999999999999999999999999999999999998754322111
Q ss_pred cccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCC
Q 017187 257 TEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKI 336 (375)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (375)
.+.+ | ....+..+|++.+++++|+++++| .
T Consensus 225 ~y~~----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~k~g-~ 254 (287)
T PRK09563 225 RYKL----------------------D---------------------------ELPEDILELLEAIARKRGALRKGG-E 254 (287)
T ss_pred HhCC----------------------C---------------------------CCCCCHHHHHHHHHHHhCccccCC-c
Confidence 1111 0 001256789999999999999876 4
Q ss_pred CCcchHHHHHHHHHHHHHhhCCCCCCeecccCCCCCC
Q 017187 337 PHKASEARLMVSKKFLTLFRTGKLGPFILDDVPDANS 373 (375)
Q Consensus 337 ~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~~~~~ 373 (375)
|| +++||+.||++||+|+||+|+||.+ +.+|
T Consensus 255 ~D-----~~~aa~~~l~d~~~Gklg~~~ld~~-~~~~ 285 (287)
T PRK09563 255 ID-----YERASELLLNEFRNGKLGKITLETP-EMAE 285 (287)
T ss_pred cC-----HHHHHHHHHHHHHcCCCCcEEccCC-cccc
Confidence 75 8999999999999999999999975 4443
No 3
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.2e-52 Score=399.72 Aligned_cols=269 Identities=39% Similarity=0.565 Sum_probs=230.0
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcE
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDY 104 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~v 104 (375)
++||||||+++++++++.++++|+||+|+|||.|.+++++.+.+...++|+|+|+||+||+++.....|.+++++.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999999999999999999988888777899999999999988766778888886556678
Q ss_pred EEEecCCccCHHHHHHHHHHHHhhhhc-------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187 105 IAINAHSRSSVQKLLELVELKLKEVIS-------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL 177 (375)
Q Consensus 105 i~iSa~~~~gvk~Ll~~L~~~l~~~~~-------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~ 177 (375)
+++|++++.|+++|++.+.+.+++... ....++++++|.||||||||||+|.+ .+.+.+++.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~-----------~~~~~~~~~ 149 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAG-----------KKVAKVGNR 149 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCccccCCC
Confidence 999999999999999999887765311 13568999999999999999999997 456788999
Q ss_pred CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccc
Q 017187 178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257 (375)
Q Consensus 178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~ 257 (375)
||+|+..+.+.+.. .++++||||+..|...+.+.+.++|++|+++++.++.+++++|++++++.+.+.. ....
T Consensus 150 ~g~T~~~~~~~~~~--~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~-----l~~~ 222 (276)
T TIGR03596 150 PGVTKGQQWIKLSD--GLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPER-----LKER 222 (276)
T ss_pred CCeecceEEEEeCC--CEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHH-----HHHH
Confidence 99999999877753 5999999999999999999999999999999999999999999999998754311 1111
Q ss_pred ccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCC
Q 017187 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIP 337 (375)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (375)
+.+ | ....+..+|++.+++++|+++++| .|
T Consensus 223 y~i----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~k~g-~~ 252 (276)
T TIGR03596 223 YKL----------------------D---------------------------ELPEDIVELLEAIAKKRGCLLKGG-EL 252 (276)
T ss_pred hCc----------------------C---------------------------CCCCCHHHHHHHHHHHhCccccCC-cc
Confidence 121 1 111256789999999999999966 47
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCCeecc
Q 017187 338 HKASEARLMVSKKFLTLFRTGKLGPFILD 366 (375)
Q Consensus 338 ~~~~~~~~~aa~~~l~~~r~G~lg~~~ld 366 (375)
| +++||+.||++||+|+||+||||
T Consensus 253 D-----~~~aa~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 253 D-----LDRAAEILLNDFRKGKLGRITLE 276 (276)
T ss_pred C-----HHHHHHHHHHHHHcCCCCceecC
Confidence 6 89999999999999999999997
No 4
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.3e-44 Score=346.50 Aligned_cols=278 Identities=35% Similarity=0.481 Sum_probs=227.0
Q ss_pred CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-C
Q 017187 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSC-K 101 (375)
Q Consensus 23 ~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g 101 (375)
..++||||||.++.+++.+.++.+|+|++|+|||+|.+++++.+.++..+++.++|+||+||++...+++|.+++.+. +
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 568999999999999999999999999999999999999999999998888999999999999999999999999765 6
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHH----hhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccccc
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKL----KEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV 174 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l----~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v 174 (375)
..+++++++++.+...+...+.... ... .......+++|||+||||||||||+|.+ .+.++|
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~-----------k~~~~~ 160 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLG-----------KKVAKT 160 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhc-----------ccceee
Confidence 6788999999888887775444332 211 2234568999999999999999999998 466999
Q ss_pred CCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC-hhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhh
Q 017187 175 GPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD-IETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253 (375)
Q Consensus 175 ~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~-~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~ 253 (375)
|+.||+|++.+++++... ++|+|||||.+|...+ ...+.+++.++++++...+...++.+++..+.. .+.+.+.+
T Consensus 161 s~~PG~Tk~~q~i~~~~~--i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~--~~~~~~~~ 236 (322)
T COG1161 161 SNRPGTTKGIQWIKLDDG--IYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLI--DEHYGEKL 236 (322)
T ss_pred CCCCceecceEEEEcCCC--eEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhhh--hhhhhHhh
Confidence 999999999999888755 9999999999999888 888899999999999999999888888766531 11111111
Q ss_pred hcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHH-HHHH
Q 017187 254 NNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFE-VLQR 332 (375)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 332 (375)
....+.. .| ..-.++.+++++++.++| .+++
T Consensus 237 ~~~~y~~---------------------~~---------------------------~~~~~~~~~l~~~a~~rg~~l~~ 268 (322)
T COG1161 237 NITRYES---------------------NP---------------------------IHRTDPEEFLELIAKKRGWLLLK 268 (322)
T ss_pred CCccccc---------------------cc---------------------------ccccCHHHHHHHHHHHhhhhhcC
Confidence 1100110 00 012357789999999999 6666
Q ss_pred hhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccCC
Q 017187 333 ALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDVP 369 (375)
Q Consensus 333 ~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~~ 369 (375)
+| .+| +.+||..+++||+.|+||+|+++..+
T Consensus 269 ~g-~~d-----~~~~~~~~~~d~~~gklg~~~~~~~~ 299 (322)
T COG1161 269 GG-EPD-----LERAAETILKDIRNGKLGWFSLEEPE 299 (322)
T ss_pred CC-Ccc-----HHHHHHHHHHHHHhCCcceeecCCcc
Confidence 55 454 89999999999999999999999753
No 5
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=310.92 Aligned_cols=263 Identities=24% Similarity=0.389 Sum_probs=204.8
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhC
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSC 100 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~ 100 (375)
..|.++|-....+.+++.++.+|+||+|+|||+|++++++..++.. ++|..|+|+||+||+|.+.+++|+.||+..
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE 205 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence 5789999888999999999999999999999999999999998883 559999999999999999999999999866
Q ss_pred CCcEEEEecCCcc-------------CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccc
Q 017187 101 KQDYIAINAHSRS-------------SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQE 167 (375)
Q Consensus 101 g~~vi~iSa~~~~-------------gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~ 167 (375)
+..+.+.++.... |.+.++..+..+... ..-...++++|+|+|||||||+||+|..
T Consensus 206 ~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~-~~lk~sIrvGViG~PNVGKSSvINsL~~---------- 274 (435)
T KOG2484|consen 206 GPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRK-GELKTSIRVGIIGYPNVGKSSVINSLKR---------- 274 (435)
T ss_pred CCcceeecccccccccccccccchhhhHHHHHHHhcCcccc-cccCcceEeeeecCCCCChhHHHHHHHH----------
Confidence 6555554432211 333333333332221 1225679999999999999999999997
Q ss_pred cccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhccccc-ccCHHHHHHHHHHHHhcCCC
Q 017187 168 KTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDS-VVGEERIAQYLLAVLNTRGT 246 (375)
Q Consensus 168 k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~-~~~~~~~a~~ll~~l~~~~~ 246 (375)
.+...||+.||+|+..++..++. ++.|+|+||+..+...+.+ .++|..++..+ ..++...+.+++..++...-
T Consensus 275 -~k~C~vg~~pGvT~smqeV~Ldk--~i~llDsPgiv~~~~~~~~---~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~ 348 (435)
T KOG2484|consen 275 -RKACNVGNVPGVTRSMQEVKLDK--KIRLLDSPGIVPPSIDEKD---ALALRNCIPIGKVADPVTPVSCILKRCSKESR 348 (435)
T ss_pred -hccccCCCCccchhhhhheeccC--CceeccCCceeecCCCccc---hhhhhcccccccccCccchHHHHHHHhhHHHH
Confidence 57789999999999999877764 5999999999998777654 67888888876 44455556666655544111
Q ss_pred CchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHH
Q 017187 247 PLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQ 326 (375)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (375)
...| .++ .+....+|+..++++
T Consensus 349 ~~~Y------------------------------------------------------~~~----~~~~~~~Fl~~~ar~ 370 (435)
T KOG2484|consen 349 SVLY------------------------------------------------------NIP----SIRATDDFLEKFARR 370 (435)
T ss_pred HHHh------------------------------------------------------cCC----CcchHHHHHHHHHHH
Confidence 1111 111 223566899999999
Q ss_pred HHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecccC
Q 017187 327 FEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILDDV 368 (375)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~ 368 (375)
+|.+.+|| +|| .+.||..+|+|||+||++|||+++.
T Consensus 371 ~G~~~kGG-~pd-----~~~AA~~vl~Dw~~Gki~y~~~pp~ 406 (435)
T KOG2484|consen 371 RGLLLKGG-IPD-----VNAAAFAVLNDWRTGKIGYYTLPPT 406 (435)
T ss_pred HhhhhcCC-CCc-----HHHHHHHHHHhhccCceeeeeCCCh
Confidence 99999976 686 8999999999999999999999853
No 6
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=272.00 Aligned_cols=256 Identities=27% Similarity=0.379 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187 30 GHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI 105 (375)
Q Consensus 30 gHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi 105 (375)
|.-.+.+..+..++..+|+||.|+|||+|+.+++..+++++ ..|..|+|+|||||++-.....|+..+. ..++++
T Consensus 198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lS-keyPTi 276 (572)
T KOG2423|consen 198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLS-KEYPTI 276 (572)
T ss_pred cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHh-hhCcce
Confidence 55556777888999999999999999999999999999883 4577899999999999999999999984 445555
Q ss_pred EE--ecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeee
Q 017187 106 AI--NAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD 183 (375)
Q Consensus 106 ~i--Sa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~ 183 (375)
.+ |-.+..|--.|++.+++.... ......+.|.+||+|||||||+||+|+. ++++.|.++||.|+-
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kL-h~dkkqISVGfiGYPNvGKSSiINTLR~-----------KkVCkvAPIpGETKV 344 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKL-HSDKKQISVGFIGYPNVGKSSIINTLRK-----------KKVCKVAPIPGETKV 344 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhh-ccCccceeeeeecCCCCchHHHHHHHhh-----------cccccccCCCCcchH
Confidence 44 444556777888877765443 4456789999999999999999999997 688999999999999
Q ss_pred eEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccC-HHHHHHHHHHHHhcCCCCchhhhhhcccccccc
Q 017187 184 IAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVG-EERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQS 262 (375)
Q Consensus 184 ~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~-~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 262 (375)
+|-+.+. ..|+|||+||+..|.-... -...+.|.++...+. +++ |+-.+|....+ .+....|+|
T Consensus 345 WQYItLm--krIfLIDcPGvVyps~dse---t~ivLkGvVRVenv~~pe~---yi~~vl~R~k~-----ehl~rtYkI-- 409 (572)
T KOG2423|consen 345 WQYITLM--KRIFLIDCPGVVYPSSDSE---TDIVLKGVVRVENVKNPED---YIDGVLERCKP-----EHLSRTYKI-- 409 (572)
T ss_pred HHHHHHH--hceeEecCCCccCCCCCch---HHHHhhceeeeeecCCHHH---HHHHHHHhhhH-----HHHHhhhCC--
Confidence 8854444 4599999999999876443 356788888866554 443 43333332111 011111222
Q ss_pred cccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchH
Q 017187 263 ETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASE 342 (375)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (375)
....|..+|++.+|.+.|.|.|||. ||
T Consensus 410 ------------------------------------------------~~w~d~~dfle~La~k~GkLlKGGE-Pd---- 436 (572)
T KOG2423|consen 410 ------------------------------------------------SGWNDSTDFLEKLAIKQGKLLKGGE-PD---- 436 (572)
T ss_pred ------------------------------------------------CccccHHHHHHHHHHHhCccccCCC-Cc----
Confidence 1456788999999999999999875 76
Q ss_pred HHHHHHHHHHHHhhCCCCCCeeccc
Q 017187 343 ARLMVSKKFLTLFRTGKLGPFILDD 367 (375)
Q Consensus 343 ~~~~aa~~~l~~~r~G~lg~~~ld~ 367 (375)
..-+|+++||||..||+.+|..++
T Consensus 437 -~~~vsKmvLnDwqRGkiP~FVpPp 460 (572)
T KOG2423|consen 437 -LVVVSKMVLNDWQRGKIPFFVPPP 460 (572)
T ss_pred -hhHHHHHHhhHhhcCCCceecCCC
Confidence 789999999999999999998753
No 7
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=267.50 Aligned_cols=266 Identities=23% Similarity=0.335 Sum_probs=187.6
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCc
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQD 103 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~ 103 (375)
|... -+.+|++|++++.+|+||.|||||.|+..+++.|+++. ..|..++++||+||++++....|.+||.+.+++
T Consensus 158 FErN-LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~ 236 (562)
T KOG1424|consen 158 FERN-LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIP 236 (562)
T ss_pred hhhC-HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCce
Confidence 4433 57899999999999999999999999999999999982 347789999999999999999999999888899
Q ss_pred EEEEecCCc----------------cCHHHHHH---------HHHHH---------Hhhh-----------h-ccCCceE
Q 017187 104 YIAINAHSR----------------SSVQKLLE---------LVELK---------LKEV-----------I-SREPTLL 137 (375)
Q Consensus 104 vi~iSa~~~----------------~gvk~Ll~---------~L~~~---------l~~~-----------~-~~~~~~~ 137 (375)
++++||... .++..... .+.+. +... . .....++
T Consensus 237 ~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vt 316 (562)
T KOG1424|consen 237 VVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVT 316 (562)
T ss_pred EEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeE
Confidence 999998651 11111111 00000 0000 0 0122489
Q ss_pred EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHH
Q 017187 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKL 217 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~l 217 (375)
|++||+|||||||+||+|.+ .+++.|+.+||.|+++|++.+.. .+.|+||||+.+|++..... .+
T Consensus 317 VG~VGYPNVGKSSTINaLvG-----------~KkVsVS~TPGkTKHFQTi~ls~--~v~LCDCPGLVfPSf~~~r~--em 381 (562)
T KOG1424|consen 317 VGFVGYPNVGKSSTINALVG-----------RKKVSVSSTPGKTKHFQTIFLSP--SVCLCDCPGLVFPSFSPTRA--EM 381 (562)
T ss_pred EEeecCCCCchhHHHHHHhc-----------CceeeeecCCCCcceeEEEEcCC--CceecCCCCccccCCCchHH--HH
Confidence 99999999999999999998 58899999999999999977764 59999999999999876322 23
Q ss_pred HHhhcccccccCHHHHHHHHH--HHHhcCCCCchhhhhhcccccccccccccccccccccCCCCCCCCCCchhhHHHHHH
Q 017187 218 ALSGSIKDSVVGEERIAQYLL--AVLNTRGTPLHWRHLNNRTEVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLV 295 (375)
Q Consensus 218 al~~~i~~~~~~~~~~a~~ll--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 295 (375)
.+.|.++ .+++.++.- .++..+.+......+-.. ..+.+|.
T Consensus 382 vl~GiLP-----IDQmrd~~~~~~llaerIP~~~Le~~Y~~---------------------k~~e~~~----------- 424 (562)
T KOG1424|consen 382 VLNGILP-----IDQLRDHYGAVGLLAERIPRHVLERLYGH---------------------KPREDPE----------- 424 (562)
T ss_pred HHhcCcc-----HHHhhcccchHHHHHHhcCHHHHHHHhCC---------------------CcccccC-----------
Confidence 3444433 444443321 112211111111000000 0011121
Q ss_pred HHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHhhCCCCCCeecc
Q 017187 296 TGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEARLMVSKKFLTLFRTGKLGPFILD 366 (375)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~aa~~~l~~~r~G~lg~~~ld 366 (375)
++..+...+++.+.+..+|++...+. || .-|||+.+|+||-+|||-++.-+
T Consensus 425 --------------~~~pp~A~ell~a~a~~RGfmts~~~-~D-----~~RAAr~ILKDyv~GKL~~~~~P 475 (562)
T KOG1424|consen 425 --------------DSRPPSAAELLNAYAYKRGFMTSKGL-PD-----EYRAARYILKDYVSGKLLYCFPP 475 (562)
T ss_pred --------------CCCCchHHHHHHHHHHhcchhhhccC-Cc-----chHHHHHHHHHHhCCeeeeeeCC
Confidence 24566778999999999999999775 66 56999999999999998777543
No 8
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=6.1e-32 Score=239.68 Aligned_cols=165 Identities=52% Similarity=0.808 Sum_probs=138.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEE
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIA 106 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~ 106 (375)
||||||.++++++++.++++|+|++|+|++.|....+..+.+...++|+++|+||+||.+++....|.++++..+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999998887666665555678999999999998766566787877655667899
Q ss_pred EecCCccCHHHHHHHHHHHHhhh------hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCe
Q 017187 107 INAHSRSSVQKLLELVELKLKEV------ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~~------~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~ 180 (375)
+|++++.|+++|.+.+...++.. ......++++++|.||||||||+|+|.+ .....+++.||+
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~ 149 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRG-----------KKVAKVGNKPGV 149 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCE
Confidence 99999999999999998875421 1123457899999999999999999997 344578899999
Q ss_pred eeeeEEEEEccCCcEEEEEcCCCC
Q 017187 181 TQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 181 T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
|+..+.+.+. ..++++||||++
T Consensus 150 T~~~~~~~~~--~~~~~iDtpG~~ 171 (171)
T cd01856 150 TKGIQWIKIS--PGIYLLDTPGIL 171 (171)
T ss_pred EeeeEEEEec--CCEEEEECCCCC
Confidence 9999887665 459999999985
No 9
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=6.6e-29 Score=217.06 Aligned_cols=151 Identities=28% Similarity=0.428 Sum_probs=124.6
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCC-CcEEEEecCCcc
Q 017187 39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCK-QDYIAINAHSRS 113 (375)
Q Consensus 39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g-~~vi~iSa~~~~ 113 (375)
+++.++++|+|++|+|++.|....+..+.++. .++|+|+|+||+||.+++....|.+++++.. ..++++|++++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 57889999999999999999888777777663 2489999999999998877778888886432 235778999999
Q ss_pred CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC
Q 017187 114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP 193 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~ 193 (375)
++++|++.+...... .......+++++|.||||||||||+|.+ .+.+.+++.||+|++.+.+.+. .
T Consensus 82 ~~~~L~~~l~~~~~~-~~~~~~~~v~~~G~~nvGKStliN~l~~-----------~~~~~~~~~~g~T~~~~~~~~~--~ 147 (157)
T cd01858 82 GKGSLIQLLRQFSKL-HSDKKQISVGFIGYPNVGKSSIINTLRS-----------KKVCKVAPIPGETKVWQYITLM--K 147 (157)
T ss_pred cHHHHHHHHHHHHhh-hccccceEEEEEeCCCCChHHHHHHHhc-----------CCceeeCCCCCeeEeEEEEEcC--C
Confidence 999999999876542 1123467899999999999999999997 4678999999999998876654 4
Q ss_pred cEEEEEcCCC
Q 017187 194 SIYVLDTPGV 203 (375)
Q Consensus 194 ~~~liDTPGi 203 (375)
+++++||||+
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5999999997
No 10
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=1.1e-26 Score=199.48 Aligned_cols=136 Identities=29% Similarity=0.481 Sum_probs=117.1
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCC
Q 017187 36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
++++++.++++|+|++|+|++.|.+..+..+.++. .++|+++|+||+||.+++....|.+++++.+.+++++|+.+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 46778999999999999999999988877777763 37899999999999887777788888877778899999987
Q ss_pred ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc
Q 017187 112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH 191 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~ 191 (375)
+.+ +++++|.||||||||+|+|.+ .+...++..||+|++.+.+.+..
T Consensus 82 ~~~----------------------~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 128 (141)
T cd01857 82 ENA----------------------TIGLVGYPNVGKSSLINALVG-----------KKKVSVSATPGKTKHFQTIFLTP 128 (141)
T ss_pred CCc----------------------EEEEECCCCCCHHHHHHHHhC-----------CCceeeCCCCCcccceEEEEeCC
Confidence 654 589999999999999999997 34457888999999998877754
Q ss_pred CCcEEEEEcCCCCCC
Q 017187 192 RPSIYVLDTPGVLVP 206 (375)
Q Consensus 192 ~~~~~liDTPGi~~~ 206 (375)
+++++||||+..|
T Consensus 129 --~~~i~DtpG~~~p 141 (141)
T cd01857 129 --TITLCDCPGLVFP 141 (141)
T ss_pred --CEEEEECCCcCCC
Confidence 5999999999876
No 11
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.94 E-value=3.3e-26 Score=203.09 Aligned_cols=143 Identities=31% Similarity=0.495 Sum_probs=109.6
Q ss_pred CeEEEEEeCCCCCCCCchhHhhc----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCC-----------
Q 017187 47 DLVIEVRDSRIPLSSAHPGLQPQ----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHS----------- 111 (375)
Q Consensus 47 DlVI~VvDar~p~s~~~~~l~~~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~----------- 111 (375)
|+|++|+|||.|+++.++.+.+. ..++|+|+|+||+||++++.+.+|.++|++....+.+.|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999888877 256999999999999999889999999965433333333321
Q ss_pred --------------ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187 112 --------------RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL 177 (375)
Q Consensus 112 --------------~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~ 177 (375)
..|.+++++.+.+.... ......++++++|.||||||||||+|.+ .+.+.+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~vG~pnvGKSslin~l~~-----------~~~~~~~~~ 148 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRN-KDIKTSITVGVVGFPNVGKSSLINSLKR-----------SRACNVGAT 148 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhc-cccccCcEEEEEcCCCCCHHHHHHHHhC-----------cccceecCC
Confidence 12233444444333222 2234468999999999999999999997 466799999
Q ss_pred CCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187 178 PGVTQDIAGFKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 178 pg~T~~~~~~~i~~~~~~~liDTPGi 203 (375)
||+|++.+++.+. .+++++||||+
T Consensus 149 pg~T~~~~~~~~~--~~~~l~DtPGi 172 (172)
T cd04178 149 PGVTKSMQEVHLD--KKVKLLDSPGI 172 (172)
T ss_pred CCeEcceEEEEeC--CCEEEEECcCC
Confidence 9999999987765 35999999997
No 12
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.93 E-value=5.4e-25 Score=191.96 Aligned_cols=144 Identities=30% Similarity=0.482 Sum_probs=116.3
Q ss_pred CeEEEEEeCCCCCCCCchhHh-hc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-CCcEEEEecCCccCHHHHHHHH
Q 017187 47 DLVIEVRDSRIPLSSAHPGLQ-PQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSC-KQDYIAINAHSRSSVQKLLELV 122 (375)
Q Consensus 47 DlVI~VvDar~p~s~~~~~l~-~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~~~gvk~Ll~~L 122 (375)
|+|++|+|++.|.++.+..+. .. ..++|+|+|+||+||++++....|+.++++. +..++++|++++.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 899999999999988887776 23 4579999999999999877667787666433 4578999999999999999988
Q ss_pred HHHHhhh-------hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcE
Q 017187 123 ELKLKEV-------ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195 (375)
Q Consensus 123 ~~~l~~~-------~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~ 195 (375)
.+...+. .......+++++|.||||||||+|+|.+ .....++..||+|++.+.+.+. .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~ 147 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLN-----------KLKLKVGNVPGTTTSQQEVKLD--NKI 147 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHc-----------cccccccCCCCcccceEEEEec--CCE
Confidence 6543211 1134578899999999999999999997 3446689999999999887664 469
Q ss_pred EEEEcCCC
Q 017187 196 YVLDTPGV 203 (375)
Q Consensus 196 ~liDTPGi 203 (375)
+++||||+
T Consensus 148 ~liDtPG~ 155 (155)
T cd01849 148 KLLDTPGI 155 (155)
T ss_pred EEEECCCC
Confidence 99999997
No 13
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.92 E-value=4.6e-25 Score=206.57 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=128.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhH-HHHHHHHhhCCCcEEEEecCCccC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNIL-NKWVRHFDSCKQDYIAINAHSRSS 114 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~~~~g~~vi~iSa~~~~g 114 (375)
..++++|.+++|+|++.|..+.+ .+.++ ..+.|+++|+||+||.+.... .+|.+.|.+.+++++.+|++++.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 36889999999999998876543 34444 257899999999999864433 367777777788899999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCC-------CCCeeeeeEEE
Q 017187 115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGP-------LPGVTQDIAGF 187 (375)
Q Consensus 115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~-------~pg~T~~~~~~ 187 (375)
++++.+.+.. ..++++|.||||||||||+|.+. ....++. -.+||++.+.+
T Consensus 111 i~eLf~~l~~-----------~~~~~~G~sgvGKStLiN~L~~~-----------~~~~t~~i~~~~~~G~hTT~~~~l~ 168 (245)
T TIGR00157 111 LKELIEALQN-----------RISVFAGQSGVGKSSLINALDPS-----------VKQQVNDISSKLGLGKHTTTHVELF 168 (245)
T ss_pred HHHHHhhhcC-----------CEEEEECCCCCCHHHHHHHHhhh-----------hhccccceeccCCCCCCcCCceEEE
Confidence 9998877642 26899999999999999999972 2222222 23489998887
Q ss_pred EEccCCcEEEEEcCCCCCCCCCChh-HHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhh
Q 017187 188 KIAHRPSIYVLDTPGVLVPSIPDIE-TGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHL 253 (375)
Q Consensus 188 ~i~~~~~~~liDTPGi~~~~~~~~~-~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~ 253 (375)
.+. +.+++||||+..+.+.+.+ .++ .++-.+.+.+|.+..|.-+...-++-+..-...+|+.|
T Consensus 169 ~l~---~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y 240 (245)
T TIGR00157 169 HFH---GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEISEWRYENY 240 (245)
T ss_pred EcC---CcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHH
Confidence 772 3699999999998876543 111 12223334455554444444444433333344444443
No 14
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.92 E-value=3.6e-24 Score=186.65 Aligned_cols=147 Identities=35% Similarity=0.450 Sum_probs=117.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L 118 (375)
..++++|++|+|+|++.|....+..+.++ ..++|+++|+||+|+.+....+.|..+.+..+.+++++|++++.|+++|
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKIL 87 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHH
Confidence 44567999999999999887776666554 3578999999999998765555555444344567899999999999999
Q ss_pred HHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEE
Q 017187 119 LELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVL 198 (375)
Q Consensus 119 l~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~li 198 (375)
.+.+.+.++. .....+++++|.|||||||++|.|.+ .....+++.+|+|++.+.+... ..++++
T Consensus 88 ~~~l~~~~~~---~~~~~~~~~ig~~~~Gkssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~~~ 151 (156)
T cd01859 88 RRTIKELAKI---DGKEGKVGVVGYPNVGKSSIINALKG-----------RHSASTSPSPGYTKGEQLVKIT--SKIYLL 151 (156)
T ss_pred HHHHHHHHhh---cCCCcEEEEECCCCCCHHHHHHHHhC-----------CCccccCCCCCeeeeeEEEEcC--CCEEEE
Confidence 9999888764 24567889999999999999999996 3456788899999887755443 359999
Q ss_pred EcCCC
Q 017187 199 DTPGV 203 (375)
Q Consensus 199 DTPGi 203 (375)
||||+
T Consensus 152 DtpGi 156 (156)
T cd01859 152 DTPGV 156 (156)
T ss_pred ECcCC
Confidence 99997
No 15
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.92 E-value=1.6e-24 Score=195.03 Aligned_cols=156 Identities=27% Similarity=0.319 Sum_probs=116.8
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhh----HHHHHHHH--hhCC---CcEEEE
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNI----LNKWVRHF--DSCK---QDYIAI 107 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~----~~~~~~~~--~~~g---~~vi~i 107 (375)
..+...++++|+|++|+|++.+.......+.....++|+++|+||+|+.+.+. .+.|.+.+ +..+ ..++++
T Consensus 26 ~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 105 (190)
T cd01855 26 NLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILI 105 (190)
T ss_pred HHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEE
Confidence 34456789999999999999887666666644455789999999999986433 22343111 2222 258899
Q ss_pred ecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE
Q 017187 108 NAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~ 187 (375)
|++++.|+++|++.+.+.++ ...+++++|.||||||||||+|++...... .+...+.++..||||++.+.+
T Consensus 106 SA~~~~gi~eL~~~l~~~l~------~~~~~~~~G~~nvGKStliN~l~~~~~~~~---~~~~~~~~~~~~gtT~~~~~~ 176 (190)
T cd01855 106 SAKKGWGVEELINAIKKLAK------KGGDVYVVGATNVGKSTLINALLKKDNGKK---KLKDLLTTSPIPGTTLDLIKI 176 (190)
T ss_pred ECCCCCCHHHHHHHHHHHhh------cCCcEEEEcCCCCCHHHHHHHHHHhccccc---ccccccccCCCCCeeeeeEEE
Confidence 99999999999999988774 345899999999999999999997321100 001346889999999999988
Q ss_pred EEccCCcEEEEEcCCC
Q 017187 188 KIAHRPSIYVLDTPGV 203 (375)
Q Consensus 188 ~i~~~~~~~liDTPGi 203 (375)
.+.. +++++||||+
T Consensus 177 ~~~~--~~~~~DtPG~ 190 (190)
T cd01855 177 PLGN--GKKLYDTPGI 190 (190)
T ss_pred ecCC--CCEEEeCcCC
Confidence 7754 5899999997
No 16
>PRK12289 GTPase RsgA; Reviewed
Probab=99.92 E-value=1.8e-24 Score=211.74 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=130.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..++++|+|++|+|+..|.... ..+.++ ..++|+++|+||+||++++..+.|.+.|+..++.++++|+.++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 4589999999999998764322 234444 2579999999999999877677888888777889999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeEEEE
Q 017187 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIAGFK 188 (375)
Q Consensus 116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~~~~ 188 (375)
++|++.+... .++|+|.||||||||||+|++ .....|+.++| ||++.+.+.
T Consensus 164 ~eL~~~L~~k-----------i~v~iG~SgVGKSSLIN~L~~-----------~~~~~t~~vs~~~~rGrHTT~~~~l~~ 221 (352)
T PRK12289 164 EALLEQLRNK-----------ITVVAGPSGVGKSSLINRLIP-----------DVELRVGKVSGKLGRGRHTTRHVELFE 221 (352)
T ss_pred HHHhhhhccc-----------eEEEEeCCCCCHHHHHHHHcC-----------ccccccccccCCCCCCCCcCceeEEEE
Confidence 9988887432 489999999999999999997 34567777888 899998877
Q ss_pred EccCCcEEEEEcCCCCCCCCCChhH-------HHH--HH-HhhcccccccCHHHHHHHH
Q 017187 189 IAHRPSIYVLDTPGVLVPSIPDIET-------GLK--LA-LSGSIKDSVVGEERIAQYL 237 (375)
Q Consensus 189 i~~~~~~~liDTPGi~~~~~~~~~~-------~~~--la-l~~~i~~~~~~~~~~a~~l 237 (375)
+..+ .+|+|||||..+.+..... ..+ ++ -.+.+.||.+..|.-+...
T Consensus 222 l~~g--~~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~~~~CrF~dC~H~~EPgCaV~ 278 (352)
T PRK12289 222 LPNG--GLLADTPGFNQPDLDCSPRELAHYFPEARQRLAQGNCQFNDCLHRDEPNCAVR 278 (352)
T ss_pred CCCC--cEEEeCCCccccccccCHHHHHhhHHHHHHhHhhCceEccCCccCCCCChhhh
Confidence 7543 6999999999988742111 111 11 2355778877766555444
No 17
>PRK12288 GTPase RsgA; Reviewed
Probab=99.91 E-value=8.3e-24 Score=206.93 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=131.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChh---hHHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPN---ILNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
-..+|+|.++.|.+.. |..+. ..+.++ ..++|.++|+||+||++.. ....|.+.|+..+++++.+|++++
T Consensus 116 ~iaANvD~vlIV~s~~-p~~s~-~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 116 PIAANIDQIVIVSAVL-PELSL-NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred eEEEEccEEEEEEeCC-CCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3468999999998864 33332 244444 3568999999999998754 245677777677889999999999
Q ss_pred cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeE
Q 017187 113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIA 185 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~ 185 (375)
.|+++|.+.+... .++|+|.||||||||||+|++ .....|+..++ ||+..+
T Consensus 194 ~GideL~~~L~~k-----------i~~~vG~sgVGKSTLiN~Ll~-----------~~~~~t~~is~~~~rGrHTT~~~~ 251 (347)
T PRK12288 194 EGLEELEAALTGR-----------ISIFVGQSGVGKSSLINALLP-----------EAEILVGDVSDNSGLGQHTTTAAR 251 (347)
T ss_pred cCHHHHHHHHhhC-----------CEEEECCCCCCHHHHHHHhcc-----------ccceeeccccCcCCCCcCceeeEE
Confidence 9999998887532 378999999999999999997 23345555554 788888
Q ss_pred EEEEccCCcEEEEEcCCCCCCCCCChh-HHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187 186 GFKIAHRPSIYVLDTPGVLVPSIPDIE-TGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256 (375)
Q Consensus 186 ~~~i~~~~~~~liDTPGi~~~~~~~~~-~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~ 256 (375)
.+.+..+ .+|+|||||....+.+.+ .++ .++-.+.+.||.+..|.-+...-++-+..-...+|+.|...
T Consensus 252 l~~l~~~--~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y~~l 329 (347)
T PRK12288 252 LYHFPHG--GDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKFRDCKHDDDPGCALREAVEEGKIAETRFENYHRI 329 (347)
T ss_pred EEEecCC--CEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHHH
Confidence 8877543 689999999998887522 112 12333445555555554444444444444444455554444
Q ss_pred c
Q 017187 257 T 257 (375)
Q Consensus 257 ~ 257 (375)
.
T Consensus 330 ~ 330 (347)
T PRK12288 330 L 330 (347)
T ss_pred H
Confidence 3
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=7.2e-23 Score=201.26 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=136.5
Q ss_pred cccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh
Q 017187 12 GLGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI 89 (375)
Q Consensus 12 ~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~ 89 (375)
+...++++.++-...-=-+-+..-.+|...+++.||+||+|+|++..++..+..+.++ ..++|+|+|+||+|-...
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-- 127 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-- 127 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--
Confidence 3445555555531111001222334677799999999999999999999988888887 456999999999997632
Q ss_pred HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHh-hh-hcc---CCceEEEEEcCCCCChHHHHHHHHhhhcccc
Q 017187 90 LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLK-EV-ISR---EPTLLVMVVGVPNVGKSALINSIHQIALSRF 163 (375)
Q Consensus 90 ~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~-~~-~~~---~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~ 163 (375)
.....+|| ..|. +++++||.++.|+.+|++.+...++ .. ... ...++++++|.||||||||+|+|++
T Consensus 128 e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilg------ 200 (444)
T COG1160 128 EELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG------ 200 (444)
T ss_pred hhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhcc------
Confidence 22334555 5565 7899999999999999999999873 21 111 2579999999999999999999998
Q ss_pred cccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 164 PVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 164 ~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
..++.|++.|||||+.....+. ++..+.++||.|++...
T Consensus 201 -----eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 201 -----EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred -----CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccc
Confidence 5789999999999998743332 34468999999998753
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=99.90 E-value=7.1e-23 Score=202.28 Aligned_cols=156 Identities=29% Similarity=0.361 Sum_probs=122.7
Q ss_pred HHHHHHHhhhcC-eEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHHHh-hCCC---cEEE
Q 017187 36 TRAIKHRLKISD-LVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRHFD-SCKQ---DYIA 106 (375)
Q Consensus 36 ~~~i~~~l~~~D-lVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~-~~g~---~vi~ 106 (375)
++++.+.+...| +|++|+|+.+...+..+.+.++..++|+++|+||+||.++. ...+|.+.+. ..+. .++.
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 455666677666 99999999998888888888877789999999999998643 3455665443 3454 5889
Q ss_pred EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187 107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~ 186 (375)
+|++++.|++++++.+.+.. .+.++++||.||||||||||+|++.. .+..+..+++..||||++.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~~-------~~~~v~vvG~~NvGKSTLiN~L~~~~------~~~~~~~~~s~~pGTT~~~~~ 205 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYR-------EGRDVYVVGVTNVGKSTLINRIIKEI------TGEKDVITTSRFPGTTLDKIE 205 (365)
T ss_pred EECCCCCCHHHHHHHHHHhc-------CCCeEEEEcCCCCcHHHHHHHHHhhc------cCccceEEecCCCCccceeEE
Confidence 99999999999999987653 23479999999999999999999621 012345779999999999988
Q ss_pred EEEccCCcEEEEEcCCCCCC
Q 017187 187 FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 187 ~~i~~~~~~~liDTPGi~~~ 206 (375)
+.+.. +.+++||||+..+
T Consensus 206 ~~l~~--~~~l~DTPGi~~~ 223 (365)
T PRK13796 206 IPLDD--GSFLYDTPGIIHR 223 (365)
T ss_pred EEcCC--CcEEEECCCcccc
Confidence 77754 4799999999754
No 20
>PRK00098 GTPase RsgA; Reviewed
Probab=99.89 E-value=4e-23 Score=198.91 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=110.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLA-NPNILNKWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
+..++++|++++|+|++.|.+..+ .+.++ ..++|+++|+||+||. +......|.+.+++.+++++++|++++.
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 345799999999999987754432 23333 3578999999999997 3344556777776678889999999999
Q ss_pred CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-------eeeeeEE
Q 017187 114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-------VTQDIAG 186 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-------~T~~~~~ 186 (375)
|+++|.+.+. +..++++|.||||||||||+|.+. ....++..++ ||+..+.
T Consensus 154 gi~~L~~~l~-----------gk~~~~~G~sgvGKStlin~l~~~-----------~~~~~g~v~~~~~~G~htT~~~~~ 211 (298)
T PRK00098 154 GLDELKPLLA-----------GKVTVLAGQSGVGKSTLLNALAPD-----------LELKTGEISEALGRGKHTTTHVEL 211 (298)
T ss_pred cHHHHHhhcc-----------CceEEEECCCCCCHHHHHHHHhCC-----------cCCCCcceeccCCCCCcccccEEE
Confidence 9999887763 236899999999999999999971 2233444433 7887777
Q ss_pred EEEccCCcEEEEEcCCCCCCCCCC
Q 017187 187 FKIAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 187 ~~i~~~~~~~liDTPGi~~~~~~~ 210 (375)
+.+.. ..+++||||+....+..
T Consensus 212 ~~~~~--~~~~~DtpG~~~~~~~~ 233 (298)
T PRK00098 212 YDLPG--GGLLIDTPGFSSFGLHD 233 (298)
T ss_pred EEcCC--CcEEEECCCcCccCCCC
Confidence 66653 47999999999766553
No 21
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.89 E-value=4.6e-22 Score=196.19 Aligned_cols=151 Identities=26% Similarity=0.342 Sum_probs=119.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHH-HHhhCCC---cEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVR-HFDSCKQ---DYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~-~~~~~g~---~vi~iSa~~~ 112 (375)
.....+|+|++|+|+.++..+..+.+.+...++|+++|+||+||+++. ...+|++ ++++.+. .++.+|++++
T Consensus 59 ~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g 138 (360)
T TIGR03597 59 SLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG 138 (360)
T ss_pred hcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC
Confidence 345788999999999988888888888877789999999999998653 3445553 3444554 4889999999
Q ss_pred cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC
Q 017187 113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR 192 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~ 192 (375)
.|++++++.+.+.. .+.++++||.||||||||||+|++... ++.+.++++..||||++.+.+.+.
T Consensus 139 ~gv~eL~~~l~~~~-------~~~~v~~vG~~nvGKStliN~l~~~~~------~~~~~~~~s~~pgtT~~~~~~~~~-- 203 (360)
T TIGR03597 139 NGIDELLDKIKKAR-------NKKDVYVVGVTNVGKSSLINKLLKQNN------GDKDVITTSPFPGTTLDLIEIPLD-- 203 (360)
T ss_pred CCHHHHHHHHHHHh-------CCCeEEEECCCCCCHHHHHHHHHhhcc------CCcceeeecCCCCeEeeEEEEEeC--
Confidence 99999999886652 235899999999999999999997211 112457899999999998877664
Q ss_pred CcEEEEEcCCCCCC
Q 017187 193 PSIYVLDTPGVLVP 206 (375)
Q Consensus 193 ~~~~liDTPGi~~~ 206 (375)
.+++++||||+..+
T Consensus 204 ~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 204 DGHSLYDTPGIINS 217 (360)
T ss_pred CCCEEEECCCCCCh
Confidence 34899999999865
No 22
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.88 E-value=2.6e-22 Score=192.26 Aligned_cols=197 Identities=19% Similarity=0.108 Sum_probs=131.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..++++|++++|+|++.|..+. ..+.++ ..++|+++|+||+||.++.....|..++.+.+++++++|++++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 4589999999999999887322 233443 3578999999999998764444566666567889999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcE
Q 017187 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSI 195 (375)
Q Consensus 116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~ 195 (375)
++|...+.. ..++++|.||||||||||+|.+...... | .-....+.-++||+..+.+++.. ..
T Consensus 153 ~~L~~~L~~-----------k~~~~~G~sg~GKSTlin~l~~~~~~~~---g-~v~~~~~~g~~tT~~~~~~~~~~--~~ 215 (287)
T cd01854 153 DELREYLKG-----------KTSVLVGQSGVGKSTLINALLPDLDLAT---G-EISEKLGRGRHTTTHRELFPLPG--GG 215 (287)
T ss_pred HHHHhhhcc-----------ceEEEECCCCCCHHHHHHHHhchhhccc---c-ceeccCCCCCcccceEEEEEcCC--CC
Confidence 998877642 3699999999999999999997211100 0 00011223345888888777753 36
Q ss_pred EEEEcCCCCCCCCCC---hh------HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhc
Q 017187 196 YVLDTPGVLVPSIPD---IE------TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNN 255 (375)
Q Consensus 196 ~liDTPGi~~~~~~~---~~------~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~ 255 (375)
+++||||+..+.+.. .+ .-..++-.+.+.+|.+..|.-+...-++-+..-...+|+.|..
T Consensus 216 ~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~ 284 (287)
T cd01854 216 LLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLK 284 (287)
T ss_pred EEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 899999997765322 11 1112344455666666666555555555454445555555443
No 23
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=6.4e-22 Score=186.84 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=135.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCcEEEEecCCcc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILN--KWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
..+.++|-+++|+.+-.|..+. ..+.++ ..+...++|+||+||++.+... ++...|++.|++++.+|++++.
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~ 153 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153 (301)
T ss_pred CcccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence 4567899999999998886654 355555 3677889999999999876655 5677777899999999999999
Q ss_pred CHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh-----hhcccccccccccccccCCCCCeeeeeEEEE
Q 017187 114 SVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ-----IALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~-----~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~ 188 (375)
++++|.+.+... ..+++|.||||||||||+|.+ +|.++.. .++++| ||+....+.
T Consensus 154 ~~~~l~~~l~~~-----------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~-~~rGkH--------TTt~~~l~~ 213 (301)
T COG1162 154 GLEELAELLAGK-----------ITVLLGQSGVGKSTLINALLPELNQKTGEISEK-LGRGRH--------TTTHVELFP 213 (301)
T ss_pred cHHHHHHHhcCC-----------eEEEECCCCCcHHHHHHhhCchhhhhhhhhccc-CCCCCC--------ccceEEEEE
Confidence 999988877532 588999999999999999986 4444422 233343 466666666
Q ss_pred EccCCcEEEEEcCCCCCCCCCChh-HHHH--------HHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcc
Q 017187 189 IAHRPSIYVLDTPGVLVPSIPDIE-TGLK--------LALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNR 256 (375)
Q Consensus 189 i~~~~~~~liDTPGi~~~~~~~~~-~~~~--------lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~ 256 (375)
+.. +.+++|||||.+..+...+ ..+. ++-.+.+++|.+..|.-+.....+-+......+|++|...
T Consensus 214 l~~--gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kl 288 (301)
T COG1162 214 LPG--GGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKL 288 (301)
T ss_pred cCC--CCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 643 4799999999999884321 1111 1223336666666555555555555555555555555554
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=1.2e-18 Score=175.74 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEec
Q 017187 33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINA 109 (375)
Q Consensus 33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa 109 (375)
....+++...++.+|+|++|+|++.+.+..+..+.++ ..++|+++|+||+|+.+.+.. ..+++ ..+. +++++||
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa 142 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISA 142 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeC
Confidence 3344667778999999999999998877766566555 357899999999999765432 12233 4555 7899999
Q ss_pred CCccCHHHHHHHHHHHHhhhh----ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187 110 HSRSSVQKLLELVELKLKEVI----SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~~~----~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~ 185 (375)
+++.|+.++++.+...++... .....++++++|.||||||||+|+|.+ .....+++.||||++..
T Consensus 143 ~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~-----------~~~~~~~~~~gtt~~~~ 211 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLG-----------EERVIVSDIAGTTRDSI 211 (429)
T ss_pred CcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHC-----------CCeeecCCCCCceECcE
Confidence 999999999999988775421 123458999999999999999999997 34466788999999876
Q ss_pred EEEEc-cCCcEEEEEcCCCCCCC
Q 017187 186 GFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 186 ~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
...+. .+..+.++||||+....
T Consensus 212 ~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 212 DIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred eEEEEECCcEEEEEECCCccccc
Confidence 43332 33468999999997643
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.8e-18 Score=176.75 Aligned_cols=156 Identities=25% Similarity=0.268 Sum_probs=114.8
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCc
Q 017187 36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSR 112 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~ 112 (375)
.+++...++.+|+||+|+|++.+.+.....+.++ ..++|+++|+||+|+..... ...+++ ..+. .++++||+++
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g 184 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHG 184 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCC
Confidence 3456667899999999999998766544445444 35789999999999965321 222233 2333 4679999999
Q ss_pred cCHHHHHHHHHHHHhhh-h---ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE
Q 017187 113 SSVQKLLELVELKLKEV-I---SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~-~---~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~ 188 (375)
.|+++|++++...+++. . ......+++++|.||||||||+|+|.+ .....+++.||+|++.....
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~-----------~~~~~~s~~~gtT~d~~~~~ 253 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAG-----------EERSVVDDVAGTTVDPVDSL 253 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCccCCcceEE
Confidence 99999999998777542 1 123468999999999999999999997 34456888999999875322
Q ss_pred E-ccCCcEEEEEcCCCCC
Q 017187 189 I-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 189 i-~~~~~~~liDTPGi~~ 205 (375)
+ ..+..+.++||||+..
T Consensus 254 ~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 254 IELGGKTWRFVDTAGLRR 271 (472)
T ss_pred EEECCEEEEEEECCCccc
Confidence 2 2234588999999864
No 26
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=5e-18 Score=171.70 Aligned_cols=158 Identities=23% Similarity=0.318 Sum_probs=117.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCcc
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRS 113 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~ 113 (375)
+++...+..+|++|+|+|++.+.+..+..+.++ ..++|+++|+||+|+.+.+ ....+++ ..+. .++++||+++.
T Consensus 72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 72 EQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHGR 148 (435)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCCC
Confidence 445567899999999999998777665555554 3478999999999976532 2223333 3454 47899999999
Q ss_pred CHHHHHHHHHHHHhhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-
Q 017187 114 SVQKLLELVELKLKEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI- 189 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i- 189 (375)
|+.++++.+....... ......++++++|.||||||||+|+|++ .....+++.||+|++.....+
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~-----------~~~~~~~~~~gtt~~~~~~~~~ 217 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLG-----------EERVIVSDIAGTTRDSIDTPFE 217 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCceEEEEEEEEE
Confidence 9999999887633221 1123578999999999999999999997 345778899999998864333
Q ss_pred ccCCcEEEEEcCCCCCCCC
Q 017187 190 AHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 190 ~~~~~~~liDTPGi~~~~~ 208 (375)
..+..+.++||||+.....
T Consensus 218 ~~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ECCeeEEEEECCCCCCCcc
Confidence 2334689999999976543
No 27
>PRK01889 GTPase RsgA; Reviewed
Probab=99.77 E-value=4e-18 Score=167.94 Aligned_cols=198 Identities=18% Similarity=0.122 Sum_probs=126.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
.++++|.|++|+++..++.. ..++++ ..+.+.++|+||+||++... ...+...+ ..+++++++|++++.|+
T Consensus 109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL 185 (356)
T ss_pred EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence 36899999999999633332 245555 35788899999999987521 22333333 46789999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCCc
Q 017187 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPS 194 (375)
Q Consensus 116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~~ 194 (375)
++|.+++. .+-+++++|.||||||||+|+|.+.-.... +.... .+....+|+..+.+.+.. +
T Consensus 186 ~~L~~~L~----------~g~~~~lvG~sgvGKStLin~L~g~~~~~~-----G~i~~~~~~g~~tt~~~~l~~l~~--~ 248 (356)
T PRK01889 186 DVLAAWLS----------GGKTVALLGSSGVGKSTLVNALLGEEVQKT-----GAVREDDSKGRHTTTHRELHPLPS--G 248 (356)
T ss_pred HHHHHHhh----------cCCEEEEECCCCccHHHHHHHHHHhcccce-----eeEEECCCCCcchhhhccEEEecC--C
Confidence 99888873 234799999999999999999997211100 00000 001112455545554543 3
Q ss_pred EEEEEcCCCCCCCCCChhHHH--------HHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccccc
Q 017187 195 IYVLDTPGVLVPSIPDIETGL--------KLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEV 259 (375)
Q Consensus 195 ~~liDTPGi~~~~~~~~~~~~--------~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~ 259 (375)
.+++||||+..+.+.+.+.++ .++-.+.+.+|....|.-+...-.+-...-+..+|+.|.....+
T Consensus 249 ~~l~DtpG~~~~~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e 321 (356)
T PRK01889 249 GLLIDTPGMRELQLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQRE 321 (356)
T ss_pred CeecCCCchhhhcccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 689999999888777654332 23333456676666555555544444444555667666665444
No 28
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=1.9e-17 Score=176.84 Aligned_cols=157 Identities=25% Similarity=0.287 Sum_probs=116.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCC
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHS 111 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~ 111 (375)
..+++...++.+|++|+|+|++..++..+..+.+. ..++|+++|+||+|+..... ...+++ ..+. .++++||++
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~ 420 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMH 420 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCC
Confidence 34566778999999999999998766655555554 46799999999999865322 122333 2332 468999999
Q ss_pred ccCHHHHHHHHHHHHhhhhc------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187 112 RSSVQKLLELVELKLKEVIS------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~~~~------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~ 185 (375)
+.|+.+|++++.+.++.... .....+|+++|.||||||||+|+|.+ .+...++..||||++..
T Consensus 421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~-----------~~~~~v~~~~gtT~d~~ 489 (712)
T PRK09518 421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH-----------EERAVVNDLAGTTRDPV 489 (712)
T ss_pred CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC-----------ccccccCCCCCCCcCcc
Confidence 99999999998877754211 23357999999999999999999997 34456788999999886
Q ss_pred EEEE-ccCCcEEEEEcCCCCC
Q 017187 186 GFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 186 ~~~i-~~~~~~~liDTPGi~~ 205 (375)
...+ ..+..+.++||||+..
T Consensus 490 ~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 490 DEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred eeEEEECCCEEEEEECCCccc
Confidence 3222 2334688999999865
No 29
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.69 E-value=3.5e-17 Score=142.73 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhh-----hcccccc
Q 017187 91 NKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQI-----ALSRFPV 165 (375)
Q Consensus 91 ~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~-----g~~~~~~ 165 (375)
++|.+.|++.|++++.+|++++.++++|.+.+.. -.++++|.+|||||||||+|.+. +.++.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~-----------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~-- 68 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG-----------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISE-- 68 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT-----------SEEEEECSTTSSHHHHHHHHHTSS----S------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC-----------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc--
Confidence 4688889899999999999999999998888753 36999999999999999999972 11211
Q ss_pred cccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187 166 QEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 166 ~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~ 210 (375)
..+.--.||+..+.+.+.. +.+||||||+..+.+..
T Consensus 69 -------~~~rGkHTTt~~~l~~l~~--g~~iIDTPGf~~~~l~~ 104 (161)
T PF03193_consen 69 -------KTGRGKHTTTHRELFPLPD--GGYIIDTPGFRSFGLWH 104 (161)
T ss_dssp -----------------SEEEEEETT--SEEEECSHHHHT--GCC
T ss_pred -------ccCCCcccCCCeeEEecCC--CcEEEECCCCCcccccc
Confidence 1111124567777776643 58999999999988774
No 30
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=2.3e-13 Score=118.49 Aligned_cols=65 Identities=31% Similarity=0.467 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCCChh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIPDIE 212 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~~~~ 212 (375)
++|+++|.||||||||+|+|.+ ....++++||+|.+.....+. .+..+.++||||+++......+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg------------~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e 66 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTG------------AKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE 66 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHT------------TSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC------------CCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH
Confidence 4799999999999999999997 347899999999998743333 2357999999999987655543
No 31
>COG1159 Era GTPase [General function prediction only]
Probab=99.43 E-value=6.1e-14 Score=131.79 Aligned_cols=97 Identities=30% Similarity=0.374 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE 212 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~ 212 (375)
+...|+++|.||||||||+|+|.+ .+.+.||+.|.|||+.. ++......++.++||||+..|.-.-.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G-----------~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~ 73 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGE 73 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhc-----------CceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHH
Confidence 345799999999999999999998 68899999999999876 455566678999999999998544433
Q ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchh
Q 017187 213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHW 250 (375)
Q Consensus 213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~ 250 (375)
.+.+.|. .++++ +|.++++.+..+.....
T Consensus 74 ~m~~~a~-~sl~d--------vDlilfvvd~~~~~~~~ 102 (298)
T COG1159 74 LMNKAAR-SALKD--------VDLILFVVDADEGWGPG 102 (298)
T ss_pred HHHHHHH-HHhcc--------CcEEEEEEeccccCCcc
Confidence 3333333 22221 34455555555544433
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.8e-13 Score=135.60 Aligned_cols=92 Identities=28% Similarity=0.409 Sum_probs=69.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~ 210 (375)
..+++++++|.||||||||+|+|.+ ..++.|++.|||||++.. +.+.+. ++.++||.|++.....-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~-----------~d~AIVTdI~GTTRDviee~i~i~G~-pv~l~DTAGiRet~d~V 282 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLG-----------RDRAIVTDIAGTTRDVIEEDINLNGI-PVRLVDTAGIRETDDVV 282 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhc-----------CCceEecCCCCCccceEEEEEEECCE-EEEEEecCCcccCccHH
Confidence 5689999999999999999999998 578999999999999975 334433 68999999999765555
Q ss_pred hhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCC
Q 017187 211 IETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 245 (375)
Q Consensus 211 ~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~ 245 (375)
+..|...|... ..-||.++++++.+.
T Consensus 283 E~iGIeRs~~~---------i~~ADlvL~v~D~~~ 308 (454)
T COG0486 283 ERIGIERAKKA---------IEEADLVLFVLDASQ 308 (454)
T ss_pred HHHHHHHHHHH---------HHhCCEEEEEEeCCC
Confidence 55566655442 222455555555554
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4.9e-13 Score=126.90 Aligned_cols=94 Identities=28% Similarity=0.382 Sum_probs=71.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE 212 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~ 212 (375)
...+++|.|+||||||||+++|.+ ....+.++|.||+.+. ++....+..+++|||||+++..+.+.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~------------AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTT------------AKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhc------------CCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 456899999999999999999996 5688999999999987 444445557999999999998888777
Q ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCC
Q 017187 213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTP 247 (375)
Q Consensus 213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~ 247 (375)
...+.|+.. -..+++.++|+++.++.+
T Consensus 235 ~IE~qAi~A--------L~hl~~~IlF~~D~Se~c 261 (346)
T COG1084 235 EIERQAILA--------LRHLAGVILFLFDPSETC 261 (346)
T ss_pred HHHHHHHHH--------HHHhcCeEEEEEcCcccc
Confidence 666666542 223455566666665544
No 34
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=109.88 Aligned_cols=66 Identities=30% Similarity=0.463 Sum_probs=54.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~ 210 (375)
....-|+++|.||||||||||+|.+ +..-+.+|..||.||.+..+.+... +.++|.||+.......
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~----------~k~LArtSktPGrTq~iNff~~~~~--~~lVDlPGYGyAkv~k 87 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTN----------QKNLARTSKTPGRTQLINFFEVDDE--LRLVDLPGYGYAKVPK 87 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhC----------CcceeecCCCCCccceeEEEEecCc--EEEEeCCCcccccCCH
Confidence 3455799999999999999999997 1235999999999999988777643 8999999998765544
No 35
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2e-11 Score=121.01 Aligned_cols=64 Identities=33% Similarity=0.586 Sum_probs=54.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~ 206 (375)
-..+++++++|.||||||||+|+|.+ ..++.|+++||||||.....+ ..+..++|+||.|++..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~-----------~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSR-----------EDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhc-----------CCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc
Confidence 35679999999999999999999997 578999999999999874333 23346999999999983
No 36
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.21 E-value=3.1e-11 Score=99.60 Aligned_cols=59 Identities=39% Similarity=0.613 Sum_probs=47.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~ 207 (375)
+|+|+|.||||||||+|+|.+ .+.+.++..|++|+.... +.+ ....+.++||||+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~-----------~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG-----------KKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT-----------STSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhc-----------cccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccc
Confidence 589999999999999999997 345788999999999853 223 33357899999998754
No 37
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.20 E-value=2.1e-11 Score=120.72 Aligned_cols=60 Identities=37% Similarity=0.467 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~ 207 (375)
..|++||.||||||||+|.|.+ .+.+.|+++||+||+... ..+... .+.+|||+|+..-.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g-----------~r~AIV~D~pGvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTG-----------RRIAIVSDTPGVTRDRIYGDAEWLGR-EFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhC-----------CeeeEeecCCCCccCCccceeEEcCc-eEEEEECCCCCcCC
Confidence 4699999999999999999998 578999999999999862 344443 59999999998644
No 38
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.09 E-value=2.1e-10 Score=109.00 Aligned_cols=59 Identities=34% Similarity=0.564 Sum_probs=48.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~ 206 (375)
+|+++|.||||||||+|+|.+ .+.+.+++.|+||++.. .+......++.++||||+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~-----------~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG-----------QKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 589999999999999999997 45677899999999865 333334446899999999875
No 39
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.05 E-value=4.9e-10 Score=101.30 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccC-CCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG-PLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~-~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~ 208 (375)
++|+++|.||||||||+|+|++ .+...++ ..+|+|+..+.... ..+..+.++||||+..+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILG-----------REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhC-----------CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 3799999999999999999997 2233333 25688888775332 2344699999999998754
No 40
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=1.4e-09 Score=102.13 Aligned_cols=65 Identities=28% Similarity=0.414 Sum_probs=51.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~ 207 (375)
....++|+|+|.+|||||||+|+|++ ...+.+++.+++|+..+.+.. ..+..+.++||||+.+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg-----------~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFG-----------ERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence 36678999999999999999999998 345667777778887775433 234468999999998753
No 41
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.99 E-value=6.3e-10 Score=104.74 Aligned_cols=68 Identities=29% Similarity=0.378 Sum_probs=55.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~ 210 (375)
..+-++|+|+|.||||||||+|.+.+ .+.+.|+..+.|||....-.+ ....++.++||||+..++.-.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig-----------~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r 137 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIG-----------QKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHR 137 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhC-----------CccccccccccceeeeeeEEEecCceEEEEecCCcccccchhh
Confidence 45678999999999999999999998 577888888999987764323 334579999999999876543
No 42
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.98 E-value=6.7e-10 Score=110.77 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=47.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi~~~~ 207 (375)
.|++||.||||||||+|+|.+ ....+++.|+||+...... ......+.++||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~------------~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSA------------AKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhC------------CcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 599999999999999999996 3358999999999987433 3333359999999998654
No 43
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.92 E-value=3.3e-09 Score=104.54 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
...+|+++|.||||||||+|+|.+ ..+.+.+.||+|++... +.+.++..+.++||||+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~------------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTG------------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 458999999999999999999997 22567788999998864 3343445799999999843
No 44
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.92 E-value=5.7e-09 Score=105.81 Aligned_cols=63 Identities=33% Similarity=0.517 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
..+++|+++|.||||||||+|+|.+ ...+.+++.||||++.....+. .+.++.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~-----------~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLK-----------QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 4678999999999999999999997 3456788999999997643322 2335889999999754
No 45
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.92 E-value=4.6e-09 Score=106.84 Aligned_cols=62 Identities=32% Similarity=0.549 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
..+++|+++|.||||||||+|+|.+ ...+.+++.||+|++... +.+. +..+.++||||+..+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~-g~~i~l~DT~G~~~~ 276 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLG-----------EERAIVTDIAGTTRDVIEEHINLD-GIPLRLIDTAGIRET 276 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcccccEEEEEEEC-CeEEEEEeCCCCCCC
Confidence 4568999999999999999999997 345678899999998764 3333 346899999999753
No 46
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4.6e-09 Score=108.64 Aligned_cols=65 Identities=34% Similarity=0.515 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCChh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPDIE 212 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~~~ 212 (375)
..+++++|.||||||||+|+|.+ ...+||+.||+|-+... ++.. +..+.++|.||+++....+.+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG------------~~q~VgNwpGvTVEkkeg~~~~~-~~~i~ivDLPG~YSL~~~S~D 69 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTG------------ANQKVGNWPGVTVEKKEGKLKYK-GHEIEIVDLPGTYSLTAYSED 69 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhc------------cCceecCCCCeeEEEEEEEEEec-CceEEEEeCCCcCCCCCCCch
Confidence 34699999999999999999997 56899999999988763 3333 335999999999987655544
No 47
>PTZ00258 GTP-binding protein; Provisional
Probab=98.88 E-value=3.7e-09 Score=104.89 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS 194 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~ 194 (375)
...++|++||.||||||||+|+|.+ ..+.+++.|+||+++.. ..+.. ..+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~------------~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aq 86 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCK------------QQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQ 86 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhc------------CcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCC
Confidence 5677999999999999999999985 44789999999988763 22221 124
Q ss_pred EEEEEcCCCCCCC
Q 017187 195 IYVLDTPGVLVPS 207 (375)
Q Consensus 195 ~~liDTPGi~~~~ 207 (375)
+.++||||+....
T Consensus 87 i~lvDtpGLv~ga 99 (390)
T PTZ00258 87 LDITDIAGLVKGA 99 (390)
T ss_pred eEEEECCCcCcCC
Confidence 8999999998643
No 48
>PRK00089 era GTPase Era; Reviewed
Probab=98.88 E-value=4.5e-09 Score=100.85 Aligned_cols=62 Identities=35% Similarity=0.551 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~ 207 (375)
...|+++|.||||||||+|+|.+ .+.+.+++.|+||+.... +......++.++||||+..+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g-----------~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhC-----------CceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 45799999999999999999997 456778889999987653 222233479999999998765
No 49
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.87 E-value=7.9e-09 Score=92.71 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=80.5
Q ss_pred HhcccccceEEeeC--C--C--cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEE
Q 017187 8 KKGLGLGEMGFTKG--G--G--NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIAL 79 (375)
Q Consensus 8 ~~~~~~g~~~~~~~--~--~--~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVl 79 (375)
.++++......... . . .+-..|||.. ..+.+...+..+|++|+|+|+..+........... ..+.|+++|+
T Consensus 51 ~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~-f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 51 ERGITIDLSFISFEKNENNRKITLIDTPGHED-FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp HCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEE
T ss_pred hcccccccccccccccccccceeecccccccc-eeecccceecccccceeeeecccccccccccccccccccccceEEee
Confidence 34555554444443 2 1 2456899964 66778888999999999999998765543333333 4578999999
Q ss_pred EcCCCCChhh---HHHHHHHH-hhC------CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 80 NKKDLANPNI---LNKWVRHF-DSC------KQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 80 NK~DL~~~~~---~~~~~~~~-~~~------g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
||+|+..... .+++.+.+ +.. ..+++++|+.++.|+..|++.+.+++|
T Consensus 130 NK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 130 NKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred eeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 9999983321 22233222 211 246999999999999999999988775
No 50
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.87 E-value=3.4e-09 Score=100.71 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=44.2
Q ss_pred EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEEEE
Q 017187 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYVLD 199 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~liD 199 (375)
+++||.||||||||+|+|.+ ....+++.|++|++... ..+... ..+.++|
T Consensus 1 igivG~PN~GKSTLfn~Lt~------------~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD 68 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhC------------CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence 47999999999999999997 33588999999988763 223221 1389999
Q ss_pred cCCCCCC
Q 017187 200 TPGVLVP 206 (375)
Q Consensus 200 TPGi~~~ 206 (375)
|||+...
T Consensus 69 ~pGl~~~ 75 (274)
T cd01900 69 IAGLVKG 75 (274)
T ss_pred CCCcCCC
Confidence 9999854
No 51
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.87 E-value=7.1e-09 Score=99.53 Aligned_cols=64 Identities=27% Similarity=0.365 Sum_probs=46.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE-EEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~-~i~~~~~~~liDTPGi~~~~ 207 (375)
...++|+++|.+||||||++|+|++ ...+.+++.+++|...... ....+..+.+|||||+.+..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG-----------~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~ 100 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIG-----------ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG 100 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH
Confidence 5678999999999999999999997 3445556665555443321 11234469999999998753
No 52
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.86 E-value=6e-09 Score=102.37 Aligned_cols=59 Identities=29% Similarity=0.416 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEE
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYV 197 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~l 197 (375)
+++++||.||||||||+|+|.+ ..+.+++.|+||++... +.+... ..+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~------------~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l 70 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF 70 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhC------------CCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence 5799999999999999999997 33788999999988762 233221 13899
Q ss_pred EEcCCCCCC
Q 017187 198 LDTPGVLVP 206 (375)
Q Consensus 198 iDTPGi~~~ 206 (375)
+||||+...
T Consensus 71 vD~pGL~~~ 79 (364)
T PRK09601 71 VDIAGLVKG 79 (364)
T ss_pred EECCCCCCC
Confidence 999999853
No 53
>PRK15494 era GTPase Era; Provisional
Probab=98.84 E-value=7.9e-09 Score=101.47 Aligned_cols=62 Identities=34% Similarity=0.555 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~ 207 (375)
...+|+++|.||||||||+|+|.+ .+.+.+++.|+||++... +.. .+.++.++||||+..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~-----------~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIG-----------EKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK 114 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhC-----------CceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc
Confidence 456899999999999999999997 355678889999988653 222 33468999999997643
No 54
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.84 E-value=4.7e-09 Score=102.75 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=47.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
.|++||+||||||||+|+|.+ ....++++|+||+.+.. +.+.....+.++||||+...
T Consensus 160 dVglVG~PNaGKSTLln~ls~------------a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHc------------CCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 589999999999999999996 33668999999999874 33434456999999999764
No 55
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.83 E-value=1e-08 Score=106.11 Aligned_cols=65 Identities=31% Similarity=0.355 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC-CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL-PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~-pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~ 209 (375)
..++|+++|.|||||||++|+|++ .+...++.. |+||+.........+..+.+|||||+......
T Consensus 117 fslrIvLVGKTGVGKSSLINSILG-----------ekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFG-----------EVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc-----------cccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc
Confidence 457899999999999999999997 234455544 67776543333334457999999999987543
No 56
>COG1159 Era GTPase [General function prediction only]
Probab=98.83 E-value=2.7e-08 Score=93.94 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=85.5
Q ss_pred ccceEEeeCCC---cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc-C-CCCEEEEEEcCCCCCh
Q 017187 13 LGEMGFTKGGG---NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-S-AKRRVIALNKKDLANP 87 (375)
Q Consensus 13 ~g~~~~~~~~~---~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-~-~kp~IiVlNK~DL~~~ 87 (375)
-.+++|-+.|+ +.+-+--+|+ +.+++.+..||+|++|+|+..++...+..+.+.+ . ..|+|+++||+|.+.+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~---~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMN---KAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHH---HHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 35778888884 1333334444 4455889999999999999998887766665553 2 4699999999999987
Q ss_pred hh-HHHHHHHHhhC--CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 88 NI-LNKWVRHFDSC--KQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 88 ~~-~~~~~~~~~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+. +....+++... ..+++++||.++.+++.|++.+..++++
T Consensus 130 ~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 130 KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 66 45666666432 2379999999999999999999999876
No 57
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.83 E-value=6.4e-09 Score=102.30 Aligned_cols=87 Identities=23% Similarity=0.428 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCc
Q 017187 115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPS 194 (375)
Q Consensus 115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~ 194 (375)
+.+....+++.+... ....++|+|+|.+|+|||||||+|++.|... ...+.||.. .||.....|.....++
T Consensus 17 ~~~~~s~i~~~l~~~--~~~~l~IaV~G~sGsGKSSfINalrGl~~~d------~~aA~tGv~-etT~~~~~Y~~p~~pn 87 (376)
T PF05049_consen 17 LQEVVSKIREALKDI--DNAPLNIAVTGESGSGKSSFINALRGLGHED------EGAAPTGVV-ETTMEPTPYPHPKFPN 87 (376)
T ss_dssp HHHHHHHHHHHHHHH--HH--EEEEEEESTTSSHHHHHHHHTT--TTS------TTS--SSSH-SCCTS-EEEE-SS-TT
T ss_pred HHHHHHHHHHHHHHh--hcCceEEEEECCCCCCHHHHHHHHhCCCCCC------cCcCCCCCC-cCCCCCeeCCCCCCCC
Confidence 444455555554432 2467899999999999999999999865422 345666654 5788888888888889
Q ss_pred EEEEEcCCCCCCCCCC
Q 017187 195 IYVLDTPGVLVPSIPD 210 (375)
Q Consensus 195 ~~liDTPGi~~~~~~~ 210 (375)
+.++|.||+..+.+..
T Consensus 88 v~lWDlPG~gt~~f~~ 103 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFPP 103 (376)
T ss_dssp EEEEEE--GGGSS--H
T ss_pred CeEEeCCCCCCCCCCH
Confidence 9999999998877644
No 58
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.81 E-value=1e-08 Score=91.18 Aligned_cols=63 Identities=32% Similarity=0.403 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~ 207 (375)
....+++++|.+|||||||+|+|.+. .....+++.+|+|++...+.+. +++.++||||+....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR----------KKLARTSKTPGRTQLINFFEVN--DGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC----------CCcccccCCCCcceEEEEEEeC--CcEEEEeCCCCcccc
Confidence 56679999999999999999999971 1245677889999988766554 369999999986543
No 59
>PRK04213 GTP-binding protein; Provisional
Probab=98.78 E-value=1.2e-08 Score=92.09 Aligned_cols=58 Identities=31% Similarity=0.511 Sum_probs=46.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
....+|+++|.+|||||||+|+|.+ ....++..||+|+....+... ++.++||||+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~ 64 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTG------------KKVRVGKRPGVTRKPNHYDWG---DFILTDLPGFGF 64 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCceeeCceEEeec---ceEEEeCCcccc
Confidence 3457899999999999999999986 224577889999987654433 589999999743
No 60
>COG2262 HflX GTPases [General function prediction only]
Probab=98.78 E-value=8.4e-08 Score=94.10 Aligned_cols=132 Identities=19% Similarity=0.166 Sum_probs=93.8
Q ss_pred eEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-cCCCCEEEEEEcCCCCChhh
Q 017187 16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-LSAKRRVIALNKKDLANPNI 89 (375)
Q Consensus 16 ~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-~~~kp~IiVlNK~DL~~~~~ 89 (375)
.+.++.-+=|+.+|.++..+++.+.+....+|++++|+|+.+|...+. ..+.++ ...+|.|+|+||+|+++...
T Consensus 242 vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 242 VLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred EEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 344444466899999999999999999999999999999999833221 112332 35689999999999887654
Q ss_pred HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 90 LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 90 ~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....+... .+ ..+++||+++.|++.|.+.|...+.. ......+.+.+...| ++-.|..
T Consensus 322 ~~~~~~~~--~~-~~v~iSA~~~~gl~~L~~~i~~~l~~----~~~~~~l~lp~~~~~---~~~~l~~ 379 (411)
T COG2262 322 ILAELERG--SP-NPVFISAKTGEGLDLLRERIIELLSG----LRTEVTLELPYTDAG---RLSWLHD 379 (411)
T ss_pred hhhhhhhc--CC-CeEEEEeccCcCHHHHHHHHHHHhhh----cccceEEEcCccccc---HHHHHHh
Confidence 22222111 12 58999999999999999999888765 233344556666666 5555554
No 61
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.78 E-value=7.3e-08 Score=84.21 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=73.1
Q ss_pred cccchh---HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC-
Q 017187 26 NWFPGH---MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCK- 101 (375)
Q Consensus 26 ~wfpgH---m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g- 101 (375)
-..||. ..+..+.+...++.+|++++|+|+..+.+.....+.+...++|+++++||+|+.+.+ ...+.+++.+.+
T Consensus 42 iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~ 120 (158)
T PRK15467 42 IDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-VAATRKLLLETGF 120 (158)
T ss_pred ccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-HHHHHHHHHHcCC
Confidence 346663 123445556678999999999999877655444444444468999999999996532 334444444444
Q ss_pred -CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 102 -QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 102 -~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+++++|++++.|++++++.+.+.+..
T Consensus 121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 121 EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 379999999999999999999887654
No 62
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.77 E-value=2.2e-08 Score=95.26 Aligned_cols=64 Identities=30% Similarity=0.461 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~ 208 (375)
....+|++||+|+||||||+|.|.+ ....++++|.||..+. ++--..+-+++++|+|||..-..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTn------------t~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTN------------TKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhC------------CCccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence 4457899999999999999999997 4578889999998876 33334455799999999987433
No 63
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.75 E-value=1.7e-08 Score=90.32 Aligned_cols=63 Identities=30% Similarity=0.399 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~ 207 (375)
....+|+++|.+|||||||+|+|.+. ...+.+++.+|+|+....+.+. .++.++||||+....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR----------KNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC----------CCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcC
Confidence 45678999999999999999999961 1246677889999988765442 469999999976543
No 64
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.75 E-value=1.9e-08 Score=85.92 Aligned_cols=62 Identities=34% Similarity=0.544 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
+++++++|.||+|||||+|+|.+ ...+.+++.||+|++....... ....+.++||||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAG-----------RDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHC-----------CceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc
Confidence 35799999999999999999997 2445677789999887642222 23368899999987543
No 65
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.75 E-value=1.2e-08 Score=89.05 Aligned_cols=57 Identities=30% Similarity=0.440 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
+|+++|.||||||||+|+|.+ ....++..|++|++... +.+.....+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~------------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc------------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 589999999999999999996 22467778888877652 2233223688999999854
No 66
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.75 E-value=1.5e-08 Score=101.96 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=46.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~~~~~liDTPGi~~ 205 (375)
.|++||.||||||||||+|.+ ...++++.|+||+.+... .+.....+.++||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~------------ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN------------AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc------------CCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 699999999999999999996 335678999999998743 333245699999999975
No 67
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.75 E-value=7.6e-08 Score=94.90 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=73.6
Q ss_pred eCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhHHHH
Q 017187 20 KGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNILNKW 93 (375)
Q Consensus 20 ~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~ 93 (375)
+.++-++.+|.++.++++.+.+.+.++|+||+|+|++.|.+.... .+... ..++|+++|+||+|+.+......
T Consensus 243 DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~- 321 (351)
T TIGR03156 243 DTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER- 321 (351)
T ss_pred ecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH-
Confidence 333434667888888888888899999999999999887654321 12222 23789999999999986543322
Q ss_pred HHHHhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+.....+++++||+++.|+++|.+.+.+.
T Consensus 322 ---~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 322 ---LEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---HHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 11222357899999999999999888653
No 68
>PRK11058 GTPase HflX; Provisional
Probab=98.74 E-value=2.5e-08 Score=100.72 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=45.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
..|+++|.||||||||+|+|.+ .+ ..+++.||+|++... +.+.....+.++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~-----------~~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITE-----------AR-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------Cc-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 5899999999999999999996 22 337788999998864 3344333688999999843
No 69
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.73 E-value=1.6e-08 Score=92.69 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccC-CCCCeeeeeEEEE-EccCCcEEEEEcCCCCCCCCCCh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVG-PLPGVTQDIAGFK-IAHRPSIYVLDTPGVLVPSIPDI 211 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~-~~pg~T~~~~~~~-i~~~~~~~liDTPGi~~~~~~~~ 211 (375)
++|+++|.+|+||||++|+|++ .....++ ...++|+..+... ...+..+.+|||||+..+...+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg-----------~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILG-----------KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT-----------SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc-----------ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 4799999999999999999997 2223332 2334566665432 23345799999999988766543
No 70
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.72 E-value=1.6e-08 Score=103.18 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
..|++||+||||||||||+|.+ ....++++|+||+.+..-.+. .+..++++||||+...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~------------akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSA------------AKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhc------------CCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 4699999999999999999996 335678999999987642222 2236899999999753
No 71
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.71 E-value=1.1e-08 Score=101.91 Aligned_cols=96 Identities=23% Similarity=0.218 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCCCCChh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPSIPDIE 212 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~~~~~~ 212 (375)
..-+++++|+|||||||++|.+.. ....|.++|.||+..- +..-...-..+++|||||+...+++.+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtr------------advevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN 234 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTR------------ADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN 234 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccc------------cccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence 356899999999999999999985 4577889999999764 211122224689999999999888888
Q ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCch
Q 017187 213 TGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLH 249 (375)
Q Consensus 213 ~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~ 249 (375)
....++++. -..+...+||+++.++.+.+
T Consensus 235 ~IEmqsITA--------LAHLraaVLYfmDLSe~CGy 263 (620)
T KOG1490|consen 235 IIEMQIITA--------LAHLRSAVLYFMDLSEMCGY 263 (620)
T ss_pred HHHHHHHHH--------HHHhhhhheeeeechhhhCC
Confidence 777777663 12344566777777765543
No 72
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.70 E-value=2e-08 Score=98.11 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
-.|++||.||||||||+|+|.+ ....++++|+||+.+.. +.+.....+.++||||+...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~------------~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhc------------CCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 3589999999999999999996 33568899999988763 33433346899999999753
No 73
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.70 E-value=1e-07 Score=81.66 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=67.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCCC-cEEEEecCCccCHHHH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLA-NPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKL 118 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gvk~L 118 (375)
....+||+|++|.||..+.+...|.+.... .+|+|=|+||+|+. +.+.++...++++..|. +++.+|+.+++|+++|
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL 137 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence 455699999999999999888888887765 58999999999998 44555666667766665 6789999999999999
Q ss_pred HHHHH
Q 017187 119 LELVE 123 (375)
Q Consensus 119 l~~L~ 123 (375)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 98875
No 74
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=8.5e-08 Score=89.61 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=46.3
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE-EccCCcEEEEEcCCCCCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK-IAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~-i~~~~~~~liDTPGi~~~~~~~ 210 (375)
...+++++++|.+|+|||||||+|++ +....++..+-.|+....+. -....++.++||||+......|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~-----------~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQ-----------GEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHh-----------ccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh
Confidence 36789999999999999999999996 23344444432333222111 1122579999999999866555
No 75
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.69 E-value=1.5e-07 Score=93.74 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=83.2
Q ss_pred cceEEeeCCCcccccchhH-HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-ccCCCCEEEEEEcCCCCChhhHH
Q 017187 14 GEMGFTKGGGNINWFPGHM-AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-QLSAKRRVIALNKKDLANPNILN 91 (375)
Q Consensus 14 g~~~~~~~~~~~~wfpgHm-~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~~~~kp~IiVlNK~DL~~~~~~~ 91 (375)
|.-+.-.+++-++-=.-.. +-|+++.++.+++||+|++|+|++.|.+..+..+.+ ...++|+++|+||+||.++....
T Consensus 264 G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 264 GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccc
Confidence 3334444444444333222 348899999999999999999999987777777766 46779999999999999865533
Q ss_pred HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 92 ~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.. .+ ..+...+.+|++++.|++.|.+.+.+.+..
T Consensus 344 ~~--~~-~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 344 SE--KL-ANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred hh--hc-cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 32 11 234468999999999999999999887654
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.69 E-value=1.4e-07 Score=85.84 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=70.8
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-CC-chhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-SA-HPGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-~~-~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~ 96 (375)
+-.-|||- +-.+.+...+..+|++++|+|++.|.. .. ...+..+ ...+|+++|+||+|+.+..... .+.+.
T Consensus 87 ~iDtPG~~-~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (203)
T cd01888 87 FVDCPGHE-ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKF 165 (203)
T ss_pred EEECCChH-HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence 44578984 456677788889999999999987522 11 1223222 2335789999999998754332 22233
Q ss_pred Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.. .+.+++++||+++.|+++|++++.+.+++
T Consensus 166 ~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 166 VKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 321 24578999999999999999999877654
No 77
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.69 E-value=2.4e-07 Score=88.03 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-CCC-cEEEEecCCc
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDS-CKQ-DYIAINAHSR 112 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~g~-~vi~iSa~~~ 112 (375)
+.+...+..+|++++|+|++.+.+.. ..+... ..++|+++|+||+|+.++.......+.+.. .+. +++++||+++
T Consensus 71 ~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 149 (270)
T TIGR00436 71 KEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTG 149 (270)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 44567889999999999998765443 233332 356899999999999865544433333322 222 7899999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 017187 113 SSVQKLLELVELKLKE 128 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~ 128 (375)
.|+++|++++.+.+++
T Consensus 150 ~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999888765
No 78
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.68 E-value=2.2e-07 Score=78.81 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=66.7
Q ss_pred ccccchhHH---HHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhh-HHHHHHHHhhC
Q 017187 25 INWFPGHMA---AATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNI-LNKWVRHFDSC 100 (375)
Q Consensus 25 ~~wfpgHm~---k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~ 100 (375)
+-..||... ...+.+...++++|++|+|+|+..+.+..+..+.+.. .+|.++|+||+||.+... .+...++++..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 117 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETA 117 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHc
Confidence 445677631 2234444568899999999999988776654444433 469999999999975322 22223334444
Q ss_pred CC-cEEEEecCCccCHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRSSVQKLLELV 122 (375)
Q Consensus 101 g~-~vi~iSa~~~~gvk~Ll~~L 122 (375)
+. +++.+|++++.|++++++++
T Consensus 118 ~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 118 GAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCCcEEEEecCCCCCHHHHHHHH
Confidence 44 68899999999999998876
No 79
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=4.7e-09 Score=99.41 Aligned_cols=103 Identities=25% Similarity=0.310 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCCCChhH
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSIPDIET 213 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~~~~~~ 213 (375)
-.+.+||+||+|||||+|+|.+ .+.+|+.++.||-.+.. .......++.+.|-|||..-.- .+.
T Consensus 197 advGLVG~PNAGKSTLL~als~------------AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nk 262 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSR------------AKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNK 262 (366)
T ss_pred cccceecCCCCcHHHHHHHhhc------------cCCcccccceeeeccccceeeccccceeEeccCcccccccc--ccC
Confidence 3578999999999999999996 44689999999988762 3334444589999999987433 334
Q ss_pred HHHHHHhhcccccccCHHHHHHHHHHHHhcCCC--Cchhhhhhcccccc
Q 017187 214 GLKLALSGSIKDSVVGEERIAQYLLAVLNTRGT--PLHWRHLNNRTEVS 260 (375)
Q Consensus 214 ~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~--~~~~~~~~~~~~~~ 260 (375)
++...+.. ..+-+..++++++.+.. ...|+.+.....++
T Consensus 263 GlG~~FLr--------HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL 303 (366)
T KOG1489|consen 263 GLGYKFLR--------HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL 303 (366)
T ss_pred cccHHHHH--------HHHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55555544 33345566666665543 13354444444343
No 80
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.66 E-value=4.3e-08 Score=85.34 Aligned_cols=57 Identities=33% Similarity=0.534 Sum_probs=42.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
+++++|.||||||||+|+|.+ ....++..|++|+....-... ....+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR------------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999996 123455678888876632222 223689999999864
No 81
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.66 E-value=3.3e-07 Score=82.95 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI 105 (375)
Q Consensus 32 m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi 105 (375)
+.+....+...+..+|++++|+|++.+.+..+. .+... ..++|+++|+||+|+.+..... ..+...+.+++
T Consensus 107 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~ 183 (204)
T cd01878 107 LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAV 183 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceE
Confidence 445555555667899999999999987654331 12222 2468999999999998765433 22333455789
Q ss_pred EEecCCccCHHHHHHHHHHH
Q 017187 106 AINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.+||+++.|++++.++|...
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 184 FISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhh
Confidence 99999999999999988654
No 82
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.65 E-value=2.1e-07 Score=83.66 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHh-
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFD- 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~- 98 (375)
-..|||. .-++.+...+..+|++++|+|++............+ ..++|+++|+||+|+..... .+++.+.+.
T Consensus 73 ~DtpG~~-~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 73 VDCPGHA-SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred EECCCcH-HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 4489984 445666677888999999999987543322111111 34679999999999985432 222222221
Q ss_pred ------hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 ------SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++++|++++.|+++|++++...++
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13467999999999999999999987764
No 83
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.65 E-value=5e-08 Score=105.02 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
..+|+++|.||||||||+|+|.+ .+..+++.||+|.+.....+. .+..+.++||||+.+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg------------~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG------------ARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 46799999999999999999986 234789999999987643332 23368999999998753
No 84
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.64 E-value=1e-07 Score=86.22 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=43.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
....+|+++|.+|||||||+|.|.+ ....+...+++|.+... +.+.....+.++||||+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTG------------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhc------------chhccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 4457999999999999999999997 11234445566665542 3333333689999999865
No 85
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.63 E-value=1.8e-07 Score=86.69 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=70.1
Q ss_pred ccccchhHHHHHHHHHHHhh--hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHH----HH
Q 017187 25 INWFPGHMAAATRAIKHRLK--ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWV----RH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~--~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~----~~ 96 (375)
+-..||| .+-.+.+...+. .+|++++|+|++.+.......+..+ ..++|+++|+||+|++++....... +.
T Consensus 88 liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~ 166 (224)
T cd04165 88 FIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRI 166 (224)
T ss_pred EEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHH
Confidence 4568999 445555666564 7999999999988776554444444 4578999999999998765443322 33
Q ss_pred HhhC--------------------------CCcEEEEecCCccCHHHHHHHHHH
Q 017187 97 FDSC--------------------------KQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 97 ~~~~--------------------------g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+... ..+++.+|+.++.|++.|.+.|..
T Consensus 167 L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 167 LKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred hcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3210 126888999999999999888754
No 86
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.63 E-value=2e-07 Score=80.39 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=66.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~ 98 (375)
-..|||. +..+.+...+..+|++++|+|++......... +... ...+|+++|+||+|+.+... .+++.+.++
T Consensus 56 ~DtpG~~-~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 134 (164)
T cd04171 56 IDVPGHE-KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA 134 (164)
T ss_pred EECCChH-HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH
Confidence 3468884 34455667788999999999998643222111 1111 23359999999999986532 234445554
Q ss_pred h---CCCcEEEEecCCccCHHHHHHHHHH
Q 017187 99 S---CKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 99 ~---~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
. .+.+++++|++++.|++++++.+..
T Consensus 135 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 135 GTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred hcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 3 3468999999999999999887753
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.62 E-value=2.8e-07 Score=81.19 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=67.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g 101 (375)
..|||. +....+...+..+|++|+|+|++.+.+..... +... ..++|+++|+||+|+.+... .+++.+.+.-..
T Consensus 73 Dt~G~~-~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 73 DTPGHV-DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDP 151 (179)
T ss_pred ECCCCh-hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCc
Confidence 368884 34455667789999999999998765433222 2222 35789999999999964321 122322221111
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..++.+||+++.|++++++++.+.++
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 24889999999999999999876653
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.62 E-value=7.1e-07 Score=76.22 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccC
Q 017187 38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSS 114 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~g 114 (375)
.....+..+|++++|+|++.+.+..+..+.++ ..+.|+++|+||+|+.+.... ...+.+.+. +++.+|++++.|
T Consensus 69 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 69 QAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred HHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCC
Confidence 44567899999999999998777666555554 346899999999999876543 222223444 689999999999
Q ss_pred HHHHHHHHHHH
Q 017187 115 VQKLLELVELK 125 (375)
Q Consensus 115 vk~Ll~~L~~~ 125 (375)
++++++++.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 89
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.62 E-value=9.4e-08 Score=81.92 Aligned_cols=62 Identities=35% Similarity=0.523 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~ 207 (375)
..+++++|.||+|||||+|+|.+ ...+.++..+++|+....... .....+.++||||+..+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC-----------CceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 45799999999999999999997 233445556667766543222 222458899999987654
No 90
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.62 E-value=1e-07 Score=95.78 Aligned_cols=167 Identities=22% Similarity=0.204 Sum_probs=113.1
Q ss_pred EeeCCCcccccchhHHHHH----------HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCCh
Q 017187 18 FTKGGGNINWFPGHMAAAT----------RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANP 87 (375)
Q Consensus 18 ~~~~~~~~~wfpgHm~k~~----------~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~ 87 (375)
.....-+.+||.-||+.+. +...+..++--++..|+|..+...+..+.+......+..+++.||+||.+.
T Consensus 73 ~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~ 152 (572)
T KOG1249|consen 73 LAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPK 152 (572)
T ss_pred cccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccc
Confidence 4444556799999999876 334445556567778888776555666667666655567999999999976
Q ss_pred hhHHHHHHHHh---h------C-C---C------cEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCCh
Q 017187 88 NILNKWVRHFD---S------C-K---Q------DYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGK 148 (375)
Q Consensus 88 ~~~~~~~~~~~---~------~-g---~------~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGK 148 (375)
+...-..+.+. . . + . .+..++++++.|+++|+-.+..... ....+..+|..||||
T Consensus 153 d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d------f~Gdf~lvg~tnvgk 226 (572)
T KOG1249|consen 153 DSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD------FRGDFYLVGATNVGK 226 (572)
T ss_pred cccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee------ccCceeeeeecccch
Confidence 54211111111 0 0 0 1 2345678889999999888876552 345689999999999
Q ss_pred HHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc
Q 017187 149 SALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA 190 (375)
Q Consensus 149 SsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~ 190 (375)
||++|+|++...++.....--..+++++.||||.....+.+.
T Consensus 227 s~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~ 268 (572)
T KOG1249|consen 227 STLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVL 268 (572)
T ss_pred hhHHHHHhhhccccccccceeeeeecccCCccccchhhCccc
Confidence 999999998544432222223568899999999987665544
No 91
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.61 E-value=8e-08 Score=83.24 Aligned_cols=61 Identities=28% Similarity=0.491 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~ 206 (375)
.++|+++|.||+|||||+|+|.+ .....++..|++|+......+ ..+..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG-----------EERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC-----------ccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 46899999999999999999997 233455677888887753222 23345889999999765
No 92
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.60 E-value=7e-08 Score=98.93 Aligned_cols=59 Identities=41% Similarity=0.565 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
..+|+++|.||||||||+|+|.+ ...+.+++.||+|++.....+. .+..+.++||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~-----------~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILG-----------RREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC-----------cCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 45899999999999999999997 3446788999999987654332 23358899999986
No 93
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.60 E-value=8.4e-08 Score=82.35 Aligned_cols=56 Identities=41% Similarity=0.656 Sum_probs=42.8
Q ss_pred EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCCC
Q 017187 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~~ 208 (375)
++|.+|||||||+|++.+ ....++..||+|++... +.+.. .++.++||||+.....
T Consensus 1 l~G~~~~GKssl~~~~~~------------~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~ 58 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG------------ARQKVGNWPGVTVEKKEGRFKLGG-KEIEIVDLPGTYSLSP 58 (158)
T ss_pred CCCCCCCCHHHHHHHHhc------------CcccccCCCCcccccceEEEeeCC-eEEEEEECCCccccCC
Confidence 589999999999999986 22566778899988753 44433 4689999999976443
No 94
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.59 E-value=3.9e-07 Score=92.77 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=73.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCC-CCCCc-hhH--hhccCCCCEEEEEEcCCCCChhhHHH----HHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIP-LSSAH-PGL--QPQLSAKRRVIALNKKDLANPNILNK----WVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p-~s~~~-~~l--~~~~~~kp~IiVlNK~DL~~~~~~~~----~~~~ 96 (375)
+-.-||| .+-++.+...+..+|++++|+||..+ ...+. +.+ .+...-+++|+|+||+|+++.+...+ +.++
T Consensus 121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 4568999 46678888999999999999999864 22211 122 22234456889999999987554333 2233
Q ss_pred Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.. ...+++++|+.++.|++.|++.|.+.++.
T Consensus 200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 200 VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 221 34689999999999999999999876654
No 95
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.59 E-value=6.2e-08 Score=82.84 Aligned_cols=57 Identities=35% Similarity=0.461 Sum_probs=42.3
Q ss_pred EEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 139 MVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 139 ~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
+++|.+|||||||+|+|.+ .....++..|++|++....... .+..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTG-----------RRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhC-----------CcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4799999999999999997 2334566778899876643222 2235889999999764
No 96
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.59 E-value=8.8e-08 Score=89.19 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=44.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~ 206 (375)
+++++|.||||||||+|+|.+ ....++..|++|.+...-.+ ..+..+.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg------------~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN------------TKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC------------CCccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 689999999999999999997 23457788899977653212 23346889999998754
No 97
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.56 E-value=1.4e-07 Score=85.49 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~ 208 (375)
+++++++|.+|||||||+|+|++.+... .....++ ...+|+....+.....+++.++||||+.....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~------~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEE------EGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCC------CCccccC-ccccccCceeeecCCCCCceEEeCCCCCcccC
Confidence 3679999999999999999999732110 0111122 12245444444333345799999999986543
No 98
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.55 E-value=7.3e-08 Score=84.25 Aligned_cols=54 Identities=35% Similarity=0.565 Sum_probs=40.7
Q ss_pred EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
++|.+|||||||+|+|.+ .. ..++..|++|++... +.+..+..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN-----------AK-PKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhc-----------CC-ccccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999997 12 256777888887753 3333245789999999854
No 99
>PRK09866 hypothetical protein; Provisional
Probab=98.54 E-value=9.5e-07 Score=91.62 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=76.1
Q ss_pred ccceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCC--CCEEEEEEcCCCCCh-
Q 017187 13 LGEMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSA--KRRVIALNKKDLANP- 87 (375)
Q Consensus 13 ~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~--kp~IiVlNK~DL~~~- 87 (375)
.++.+|.++|+--..--.|+.+.+. +.+..+|+|++|+|++.+.+..+..+.+. ..+ .|+++|+||+|+.+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 4788898888733222234454444 57999999999999987666666555554 233 499999999999752
Q ss_pred ----hhHHHHHH-HHhhC---CCcEEEEecCCccCHHHHHHHHHHH
Q 017187 88 ----NILNKWVR-HFDSC---KQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 88 ----~~~~~~~~-~~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+.+.+.+. ++.+. ...++++||+.+.+++.|++.+...
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 23333332 22222 2369999999999999999988763
No 100
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.54 E-value=1.3e-07 Score=94.58 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc-----------------------
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA----------------------- 190 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~----------------------- 190 (375)
++|++||.||||||||+|+|.+ ..+.+++.|++|+++.. ..+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~------------~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~ 69 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT 69 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhC------------CcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence 4799999999999999999996 33577888999987763 1110
Q ss_pred cCCcEEEEEcCCCCCC
Q 017187 191 HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 191 ~~~~~~liDTPGi~~~ 206 (375)
..-++.++||||+...
T Consensus 70 ~~~~i~i~D~aGl~~g 85 (396)
T PRK09602 70 RFIPVELIDVAGLVPG 85 (396)
T ss_pred ceeeEEEEEcCCcCCC
Confidence 0123779999999753
No 101
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.53 E-value=1.4e-07 Score=101.30 Aligned_cols=59 Identities=37% Similarity=0.530 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
.+|+++|.||||||||+|+|.+ .+.+.+++.||+|++....... .+..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~-----------~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILG-----------RREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999997 3457788999999987754332 233688999999864
No 102
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.52 E-value=1.1e-06 Score=74.98 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS 114 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g 114 (375)
..++....+.++|++++|+|++.+.+..+..+......+|+++|+||+|+.+.... .....+.+++.+|++++.|
T Consensus 70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 70 GIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCC
Confidence 34556677889999999999998776665554444567999999999999875543 1223456899999999999
Q ss_pred HHHHHHHHHHHH
Q 017187 115 VQKLLELVELKL 126 (375)
Q Consensus 115 vk~Ll~~L~~~l 126 (375)
++++.+++...+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 103
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.52 E-value=7.7e-07 Score=78.56 Aligned_cols=101 Identities=20% Similarity=0.125 Sum_probs=70.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS 99 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~ 99 (375)
-..||+.. ........+..+|.+++|+|+..+.......+... ..++|+++|+||+|+..++.... ..+.++.
T Consensus 67 iDtpG~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (189)
T cd00881 67 IDTPGHED-FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGL 145 (189)
T ss_pred EeCCCcHH-HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcc
Confidence 34788743 33445577889999999999987765433333222 35799999999999986433222 2223322
Q ss_pred --------------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 100 --------------CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 100 --------------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
...+++++|++++.|++++++++...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 146 IGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2457899999999999999999877653
No 104
>PRK15494 era GTPase Era; Provisional
Probab=98.51 E-value=1.1e-06 Score=86.35 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC--CcEEEEecCCc
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCK--QDYIAINAHSR 112 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g--~~vi~iSa~~~ 112 (375)
+..+..+..+|++|+|+|++.++......+.+. ..+.|.++|+||+|+.+. ......+++.... ..++++||+++
T Consensus 123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg 201 (339)
T PRK15494 123 RCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSG 201 (339)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 445567899999999999987665543333332 235788999999999754 3344455554332 46899999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 017187 113 SSVQKLLELVELKLKE 128 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~ 128 (375)
.|++++++++...+++
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999888765
No 105
>PRK00089 era GTPase Era; Reviewed
Probab=98.51 E-value=1.5e-06 Score=83.29 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=69.5
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--CCCCEEEEEEcCCCC-ChhhHHHHHHHHhh--CCCcEEEEecCC
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--SAKRRVIALNKKDLA-NPNILNKWVRHFDS--CKQDYIAINAHS 111 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~--~g~~vi~iSa~~ 111 (375)
+.+...+..+|++++|+|+..+++.....+.+.. .++|+++|+||+|+. +........+.+.+ ...+++++||++
T Consensus 76 ~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 76 KAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 4455678999999999999886665544554442 357999999999998 44555555555543 224789999999
Q ss_pred ccCHHHHHHHHHHHHhh
Q 017187 112 RSSVQKLLELVELKLKE 128 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~ 128 (375)
+.|++++++++.+.+++
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999888764
No 106
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.49 E-value=3.2e-07 Score=84.98 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec--cCCcEEEEEcCCCCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA--HRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~--~~~~~~liDTPGi~~~~~~ 209 (375)
.-..|.|+|.+++|||||+|.|++.. .........+.+|+.+.... +. ....+.++||||+..+...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~---------~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~ 76 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTL---------SGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG 76 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCC---------CCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence 34578999999999999999999831 01122223366777765221 11 2346999999999987654
Q ss_pred C
Q 017187 210 D 210 (375)
Q Consensus 210 ~ 210 (375)
.
T Consensus 77 ~ 77 (224)
T cd01851 77 E 77 (224)
T ss_pred c
Confidence 4
No 107
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.49 E-value=1.5e-06 Score=78.72 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=70.7
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEE
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALN 80 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlN 80 (375)
.||+++......+...+ +-.-|||. +-+..+...+..+|++++|+|+..+.......+... ..++| +|+|+|
T Consensus 48 ~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 48 ARGITINTAHVEYETANRHYAHVDCPGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred hcCccEEeeeeEecCCCeEEEEEECcCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEe
Confidence 56666665555554433 34589995 456778888999999999999987655444333333 34566 678899
Q ss_pred cCCCCChhhH-H----HHHHHHhhCC-----CcEEEEecCCccCH
Q 017187 81 KKDLANPNIL-N----KWVRHFDSCK-----QDYIAINAHSRSSV 115 (375)
Q Consensus 81 K~DL~~~~~~-~----~~~~~~~~~g-----~~vi~iSa~~~~gv 115 (375)
|+|+++.+.. + +..+++...+ .+++++|+.++.+.
T Consensus 127 K~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 127 KADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 9999753322 1 2333333333 47899999998763
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.48 E-value=5.1e-07 Score=78.60 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=67.2
Q ss_pred ccccchhHH------HHHHHHHHHhhhcCeEEEEEeCCCC-CCCC--chh---Hhhc---cCCCCEEEEEEcCCCCChhh
Q 017187 25 INWFPGHMA------AATRAIKHRLKISDLVIEVRDSRIP-LSSA--HPG---LQPQ---LSAKRRVIALNKKDLANPNI 89 (375)
Q Consensus 25 ~~wfpgHm~------k~~~~i~~~l~~~DlVI~VvDar~p-~s~~--~~~---l~~~---~~~kp~IiVlNK~DL~~~~~ 89 (375)
+-..||+.. .-.....+.+..+|++++|+|++.+ .+.. ... +.+. ...+|+++|+||+|+.++..
T Consensus 52 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 52 VADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 345688631 1123344556789999999999876 2211 111 2111 13689999999999987666
Q ss_pred HHHHHHHHhhC--CCcEEEEecCCccCHHHHHHHHHHH
Q 017187 90 LNKWVRHFDSC--KQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 90 ~~~~~~~~~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
...+.+.+... +.+++.+|++++.|++++++++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 132 LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 55555444322 5678999999999999999888654
No 109
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.48 E-value=2.7e-07 Score=79.54 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=38.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi 203 (375)
.++++|.||||||||+|+|.+.. .........+++|.+... +.+.....+.++||||.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~ 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence 68999999999999999998610 011111234567766543 33332346899999996
No 110
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.46 E-value=3.4e-07 Score=79.46 Aligned_cols=56 Identities=36% Similarity=0.628 Sum_probs=39.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc----CCcEEEEEcCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH----RPSIYVLDTPGVL 204 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~----~~~~~liDTPGi~ 204 (375)
.++++|.+|||||||+|+|.+ .. ......+++|++.....+.. ...+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK-----------TN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh-----------cc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 489999999999999999986 11 22234467777665333322 3468999999974
No 111
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.46 E-value=3.4e-06 Score=72.10 Aligned_cols=88 Identities=25% Similarity=0.237 Sum_probs=67.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhhCC--CcEEEEecCCc
Q 017187 38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFDSCK--QDYIAINAHSR 112 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~~g--~~vi~iSa~~~ 112 (375)
.....+..+|++++|+|+..+.+.....+.+. ..+.|.++|+||+|+. .......+.+.+.... .+++.+|++++
T Consensus 75 ~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 75 AAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred HHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence 44567899999999999998865555455444 2358999999999998 4555666666665433 57899999999
Q ss_pred cCHHHHHHHHHHH
Q 017187 113 SSVQKLLELVELK 125 (375)
Q Consensus 113 ~gvk~Ll~~L~~~ 125 (375)
.+++++.+.+.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999988654
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.46 E-value=1.6e-06 Score=74.93 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=64.1
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHHhh-C----CCcEEEEec
Q 017187 39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHFDS-C----KQDYIAINA 109 (375)
Q Consensus 39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~~~-~----g~~vi~iSa 109 (375)
....+..+|++++|+|+..+.+.....+... ..++|+++|+||+|+.+. .....+.+.+.+ . ..+++++|+
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 4456789999999999998877655444443 357899999999999876 334444444432 1 247899999
Q ss_pred CCccCHHHHHHHHHHH
Q 017187 110 HSRSSVQKLLELVELK 125 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~ 125 (375)
+++.|++++.+.+.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999887653
No 113
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.45 E-value=9.2e-07 Score=90.49 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=70.4
Q ss_pred ccccchh-----HHHHH-HHHHHHhhhcCeEEEEEeCCC------CCCCCc---hhHhhc------------cCCCCEEE
Q 017187 25 INWFPGH-----MAAAT-RAIKHRLKISDLVIEVRDSRI------PLSSAH---PGLQPQ------------LSAKRRVI 77 (375)
Q Consensus 25 ~~wfpgH-----m~k~~-~~i~~~l~~~DlVI~VvDar~------p~s~~~---~~l~~~------------~~~kp~Ii 77 (375)
+-..||- ..+++ .+..+.+++||+||+|+|+.. |+.... .+|..+ +..+|+|+
T Consensus 210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV 289 (500)
T PRK12296 210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLV 289 (500)
T ss_pred EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence 3457773 23333 345567899999999999964 222211 122222 23689999
Q ss_pred EEEcCCCCChhhHHH-HHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 78 ALNKKDLANPNILNK-WVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 78 VlNK~DL~~~~~~~~-~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
|+||+|+.+.....+ +...+.+.+.+++++||+++.|+++|+.++.+.+..
T Consensus 290 VlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 290 VLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999975543333 333454557789999999999999999999887755
No 114
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.45 E-value=3e-07 Score=79.07 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=44.0
Q ss_pred EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~ 206 (375)
|+++|.+|+|||||+|+|.+. .....++..+|+|+....+.+.. .++++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~~--~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNR----------KKLARTSKTPGKTQLINFFNVND--KFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcC----------CceeeecCCCCcceeEEEEEccC--eEEEecCCCcccc
Confidence 789999999999999999941 23355667788888776654443 6999999998664
No 115
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.45 E-value=1.4e-06 Score=91.98 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=74.1
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCChhhHH----HHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANPNILN----KWVRHF 97 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~~~~~----~~~~~~ 97 (375)
+-.-||| .+..+.+...+..+|++++|+|++.+..........+ ..+.| +|+|+||+|+++++... ++.+++
T Consensus 55 ~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l 133 (614)
T PRK10512 55 FIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL 133 (614)
T ss_pred EEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 5579999 4566788888999999999999987655433322222 23456 57999999998754432 233344
Q ss_pred hhCC---CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCK---QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g---~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
...+ .+++++|++++.|++.|++.|......
T Consensus 134 ~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 134 REYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 3333 478999999999999999999876544
No 116
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.45 E-value=2.5e-07 Score=89.91 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=43.0
Q ss_pred EEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEE---------------------c--cC
Q 017187 138 VMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKI---------------------A--HR 192 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i---------------------~--~~ 192 (375)
++++|.||||||||+|+|.+ ..+.+++.|++|+++.. ... . ..
T Consensus 1 i~ivG~pnvGKStLfn~lt~------------~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhC------------CCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence 47999999999999999996 33678899999987652 111 0 11
Q ss_pred CcEEEEEcCCCCCC
Q 017187 193 PSIYVLDTPGVLVP 206 (375)
Q Consensus 193 ~~~~liDTPGi~~~ 206 (375)
-++.++||||+...
T Consensus 69 v~i~l~D~aGlv~g 82 (318)
T cd01899 69 VPVELIDVAGLVPG 82 (318)
T ss_pred ceEEEEECCCCCCC
Confidence 24889999999753
No 117
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.45 E-value=5.2e-07 Score=76.17 Aligned_cols=57 Identities=32% Similarity=0.447 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccC-CcEEEEEcCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~-~~~~liDTPGi~ 204 (375)
++|+++|.+|+|||||+|+|.+ .. ......|++|++.... ..... ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLG-----------NK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhC-----------CC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 5899999999999999999996 22 5556667888877653 23221 247789999943
No 118
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.44 E-value=2.2e-07 Score=89.21 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=49.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCCcEEEEEcCCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~~~~liDTPGi~~~~ 207 (375)
.|.+||+||+|||||||++.. .+.+++++|.||..+. .+++.....+++.|-||+.+-.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~------------AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSA------------AKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhh------------cCCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence 478999999999999999996 5688999999999886 3555556679999999998743
No 119
>PRK11058 GTPase HflX; Provisional
Probab=98.41 E-value=2.7e-06 Score=86.04 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=75.7
Q ss_pred ceEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChh
Q 017187 15 EMGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPN 88 (375)
Q Consensus 15 ~~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~ 88 (375)
...+.+.++-++-.|.++..+++.+.+.+.++|++|+|+|+..|.+..+. .+... ..++|+++|+||+|+.+..
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 33444444444555777777788888889999999999999887543321 12222 2368999999999997542
Q ss_pred hHHHHHHHHhhCCCc-EEEEecCCccCHHHHHHHHHHHHhh
Q 017187 89 ILNKWVRHFDSCKQD-YIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 89 ~~~~~~~~~~~~g~~-vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.. . .... ..+.+ ++.+||+++.|+++|++++.+.+..
T Consensus 326 ~~-~-~~~~-~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 326 EP-R-IDRD-EENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred hH-H-HHHH-hcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 21 1 1111 22333 4789999999999999999887743
No 120
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.41 E-value=3.3e-06 Score=85.06 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=76.5
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCc-hhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAH-PGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~ 96 (375)
+-..|||. +-.+.+...+..+|++++|+|++.+. .... ..+..+ ...+++++|+||+|+++.+... +..++
T Consensus 84 liDtPGh~-~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 84 FVDAPGHE-TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEECCCHH-HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 45589994 45677778888999999999999764 2221 122222 3346789999999998754322 22222
Q ss_pred Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEE
Q 017187 97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVV 141 (375)
Q Consensus 97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vv 141 (375)
+.. .+.+++++|++++.|++.|+++|...++.. .....+++..|.
T Consensus 163 l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~ 211 (406)
T TIGR03680 163 VKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVA 211 (406)
T ss_pred hhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEE
Confidence 222 145789999999999999999998866532 122344444444
No 121
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.39 E-value=2.9e-06 Score=85.56 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=75.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCch-hHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAHP-GLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~ 96 (375)
+-.-|||. +-...+...+..+|++++|+|++.+. ..... .+..+ ...+|+++|+||+|+.+.+... ++..+
T Consensus 89 liDtPG~~-~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 89 FVDAPGHE-TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 44579995 45566777788899999999999765 22211 22222 2335789999999998754322 22233
Q ss_pred Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEE
Q 017187 97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVV 141 (375)
Q Consensus 97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vv 141 (375)
+.. .+.+++++|++++.|++.|++.|...++.. .....+++..|.
T Consensus 168 l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~ 216 (411)
T PRK04000 168 VKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVA 216 (411)
T ss_pred hccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEE
Confidence 321 245789999999999999999998876542 122344454444
No 122
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.39 E-value=8.1e-07 Score=76.62 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=37.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGV 203 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi 203 (375)
+++++|.||||||||+|++++ .....+..|++|.+... +.+... -.+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY------------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc------------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 689999999999999999996 11222445666665432 222221 13779999994
No 123
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.39 E-value=1.9e-06 Score=87.02 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=68.3
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHhh-----CCCcEEEEe
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFDS-----CKQDYIAIN 108 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~~-----~g~~vi~iS 108 (375)
.+....++.+|++|+|+|+..+.+..+..+.+. ..++|+++|+||+||+ +.+..+...+.+++ ...+++++|
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 344567899999999999998877665554444 3579999999999998 44333343333321 135789999
Q ss_pred cCCccCHHHHHHHHHHHHhh
Q 017187 109 AHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~~l~~ 128 (375)
|+++.|++++++++.+....
T Consensus 326 A~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 124
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.38 E-value=1.1e-06 Score=85.91 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=69.5
Q ss_pred ccccchhHH-----HHH-HHHHHHhhhcCeEEEEEeCCCCC-----CCCc---hhHhhc---cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMA-----AAT-RAIKHRLKISDLVIEVRDSRIPL-----SSAH---PGLQPQ---LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~-----k~~-~~i~~~l~~~DlVI~VvDar~p~-----s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~ 87 (375)
+-..||... +++ .+..+.++++|++|+|+|+..+- .... .++..+ ...+|+++|+||+|+.+.
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 345777632 222 34456688999999999987541 1111 112222 246899999999999876
Q ss_pred hhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 88 NILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 88 ~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
...+++.+.+. ..+.+++++||+++.|++++++++.+.+
T Consensus 289 ~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 289 EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 55555555554 3356899999999999999999987654
No 125
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.38 E-value=4e-06 Score=70.65 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=66.2
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHH---H--HhhCCCcEEEEec
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVR---H--FDSCKQDYIAINA 109 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~---~--~~~~g~~vi~iSa 109 (375)
..+...+..+|++++|+|+..+....... +... ..+.|.++|+||+|+........+.+ . ....+.+++.+|+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA 146 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence 45567889999999999999876665443 2222 46789999999999998766555432 1 1123557899999
Q ss_pred CCccCHHHHHHHHHHH
Q 017187 110 HSRSSVQKLLELVELK 125 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~ 125 (375)
.++.|++++++++.+.
T Consensus 147 ~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 147 LTGEGIDELREALIEA 162 (163)
T ss_pred eccCCHHHHHHHHHhh
Confidence 9999999999988654
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.38 E-value=1.7e-06 Score=84.78 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=63.7
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc---cCCCCEEEEEEcCCCCChhhHH-HHHH-HHhhCCCcEEE
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ---LSAKRRVIALNKKDLANPNILN-KWVR-HFDSCKQDYIA 106 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~---~~~kp~IiVlNK~DL~~~~~~~-~~~~-~~~~~g~~vi~ 106 (375)
.+..+.++++|++|+|+|+..+.+..+ .++..+ +.++|+++|+||+|+.+..... ...+ ++...+.++++
T Consensus 228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~ 307 (335)
T PRK12299 228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFL 307 (335)
T ss_pred HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEE
Confidence 355567889999999999975432111 112222 2468999999999998654322 2222 23344568999
Q ss_pred EecCCccCHHHHHHHHHHHHhh
Q 017187 107 INAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+||+++.|++++++++.+.+.+
T Consensus 308 iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887754
No 127
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.38 E-value=2.4e-06 Score=89.76 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=72.4
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCChhhHH----HHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANPNILN----KWVRHF 97 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~~~~~----~~~~~~ 97 (375)
+-..||| .+..+.+...+.++|++++|+|++.+..........+ ..+.| +++|+||+|+++.+..+ +..+++
T Consensus 54 ~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l 132 (581)
T TIGR00475 54 FIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL 132 (581)
T ss_pred EEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4568999 4566777888899999999999987543222111111 34567 99999999998765332 222223
Q ss_pred hhC----CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSC----KQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
... +.+++++|++++.|++++.+.+...+..
T Consensus 133 ~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 133 NSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 222 4679999999999999999988776654
No 128
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.37 E-value=1e-06 Score=76.52 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=63.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 99 (375)
..|||.. ........++.+|++++|+|+..+.+-. ...+..+ ..+.|+++|+||+|+.+.....+..++++.
T Consensus 56 Dt~G~~~-~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~ 134 (167)
T cd04160 56 DLGGQES-LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQD 134 (167)
T ss_pred ECCCChh-hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcc
Confidence 4788843 2233456689999999999997653211 0112222 246899999999999765433333333321
Q ss_pred -------CCCcEEEEecCCccCHHHHHHHHH
Q 017187 100 -------CKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 100 -------~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.+.+++.+||+++.|+++++++|.
T Consensus 135 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 135 KAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 234789999999999999998874
No 129
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=2.3e-06 Score=78.50 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEcc
Q 017187 113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAH 191 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~ 191 (375)
-|++.+++.+....-. ....++|||||.+|.|||||+|+|+........ ......-+.|.||.-.. ..-+..
T Consensus 27 vGidtI~~Qm~~k~mk---~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s----~~~~~~~p~pkT~eik~~thvieE 99 (336)
T KOG1547|consen 27 VGIDTIIEQMRKKTMK---TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSS----SSDNSAEPIPKTTEIKSITHVIEE 99 (336)
T ss_pred ccHHHHHHHHHHHHHh---ccCceEEEEEecCCCCchhhHHHHHHHHHhhcc----CCCcccCcccceEEEEeeeeeeee
Confidence 4888888888766533 467899999999999999999999972111000 00111114444443221 111222
Q ss_pred CC---cEEEEEcCCCCCC
Q 017187 192 RP---SIYVLDTPGVLVP 206 (375)
Q Consensus 192 ~~---~~~liDTPGi~~~ 206 (375)
.. ++.++||||+...
T Consensus 100 ~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred cceEEEEEEecCCCcccc
Confidence 11 3789999999864
No 130
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.33 E-value=3.4e-06 Score=85.46 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=69.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-----CCCcEEEEecC
Q 017187 38 AIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDS-----CKQDYIAINAH 110 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~g~~vi~iSa~ 110 (375)
+..+.++.+|++|+|+|+..+.+..+..+... ..++|+++|+||+|+.+.+..+++.+.+.. ...+++++||+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 44567899999999999998877766555554 357999999999999865544444444321 13578999999
Q ss_pred CccCHHHHHHHHHHHHhh
Q 017187 111 SRSSVQKLLELVELKLKE 128 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~~ 128 (375)
++.|++++++.+.+....
T Consensus 328 ~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998776654
No 131
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.33 E-value=3.7e-06 Score=85.72 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS 114 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g 114 (375)
++++..+.+.++|++++|+|+..+.+..+..+.....++|+++|+||+|+.+..... ...+.+++.+|++++.|
T Consensus 284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCC
Confidence 456677889999999999999887654432222224578999999999997654322 12345789999999999
Q ss_pred HHHHHHHHHHHHh
Q 017187 115 VQKLLELVELKLK 127 (375)
Q Consensus 115 vk~Ll~~L~~~l~ 127 (375)
+++|++++.+.+.
T Consensus 358 I~~L~~~L~~~l~ 370 (449)
T PRK05291 358 IDELREAIKELAF 370 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987764
No 132
>PRK12736 elongation factor Tu; Reviewed
Probab=98.33 E-value=9.2e-06 Score=81.49 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=85.7
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVl 79 (375)
..||+++......+...+ +-.-|||. +.+..+...+..+|++++|+|++.+..........+ ..++| .|+++
T Consensus 57 ~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~Ivvi 135 (394)
T PRK12736 57 KERGITINTAHVEYETEKRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFL 135 (394)
T ss_pred HhcCccEEEEeeEecCCCcEEEEEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEE
Confidence 467777666655554433 34689985 556777788899999999999987655443333333 34677 56889
Q ss_pred EcCCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc--------CHHHHHHHHHHHHhhh-hccCCceEEEE
Q 017187 80 NKKDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS--------SVQKLLELVELKLKEV-ISREPTLLVMV 140 (375)
Q Consensus 80 NK~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~--------gvk~Ll~~L~~~l~~~-~~~~~~~~v~v 140 (375)
||+|+++.+... +..+++...+ .+++++|+.++. ++..|++.+.+.++.. .....++++.|
T Consensus 136 NK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I 215 (394)
T PRK12736 136 NKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPV 215 (394)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 999998543221 2333333333 478999999872 5788888888776532 22234455444
Q ss_pred E
Q 017187 141 V 141 (375)
Q Consensus 141 v 141 (375)
-
T Consensus 216 ~ 216 (394)
T PRK12736 216 E 216 (394)
T ss_pred E
Confidence 3
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.33 E-value=1.6e-06 Score=76.34 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
.+||+-. ........++.+|++++|+|+..+.+-.+ ..+..+ ..+.|+++|+||+|+......++..+.+.
T Consensus 64 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 142 (173)
T cd04154 64 DVGGQKT-LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALEL 142 (173)
T ss_pred ECCCCHH-HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCc
Confidence 4788742 12233456889999999999987532111 122222 25689999999999975433333333332
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
....+++.+||+++.|++++++++.
T Consensus 143 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 143 DKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred cccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 2345789999999999999988874
No 134
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.31 E-value=1.9e-06 Score=72.74 Aligned_cols=60 Identities=30% Similarity=0.462 Sum_probs=43.9
Q ss_pred EEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc--CCcEEEEEcCCCCCCCCCC
Q 017187 140 VVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH--RPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 140 vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~--~~~~~liDTPGi~~~~~~~ 210 (375)
++|.+|+|||||+|+|.+ ......+..+++|.......... ...+.++||||+.......
T Consensus 1 i~G~~gsGKstl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~ 62 (163)
T cd00880 1 LFGRTNAGKSSLLNALLG-----------QEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG 62 (163)
T ss_pred CcCCCCCCHHHHHHHHhC-----------ccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch
Confidence 589999999999999997 23344666777887776543332 4579999999998765433
No 135
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.31 E-value=3.3e-06 Score=73.38 Aligned_cols=99 Identities=13% Similarity=-0.002 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g 101 (375)
..||+..- .......++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+.. ..+..++.+..+
T Consensus 55 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~ 132 (161)
T cd04124 55 DTAGQERF-QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHN 132 (161)
T ss_pred eCCCchhh-hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcC
Confidence 36887432 2233456899999999999876544221 112222 2468999999999996432 223333333445
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+++.+|++++.|++++++.+.+.+.
T Consensus 133 ~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 133 LPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998876553
No 136
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.31 E-value=4e-06 Score=75.38 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=59.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c-cCCCCEEEEEEcCCCCChh---hHHHHHHHHh--
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q-LSAKRRVIALNKKDLANPN---ILNKWVRHFD-- 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~-~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~-- 98 (375)
-.-|||.. -...+...++.+|++++|+|+..........+.. . ..++|+++|+||+|+.... ..+++.+++.
T Consensus 70 ~DtpG~~~-~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 148 (194)
T cd01891 70 VDTPGHAD-FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIEL 148 (194)
T ss_pred EECCCcHH-HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 44788843 3345667789999999999998643222122222 1 3578999999999997432 2334445442
Q ss_pred -----hCCCcEEEEecCCccCHHH
Q 017187 99 -----SCKQDYIAINAHSRSSVQK 117 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~ 117 (375)
+.+.+++++|++++.|+.+
T Consensus 149 ~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 149 GATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCccccCccCEEEeehhccccccc
Confidence 2256789999999866533
No 137
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.30 E-value=2.5e-06 Score=73.47 Aligned_cols=97 Identities=18% Similarity=0.036 Sum_probs=63.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-------LSAKRRVIALNKKDLANPNILNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~~ 96 (375)
-..||+.. ........++.+|++|+|+|++.+.+... ..+..+ ..++|+++|+||+|+.+.....++.+.
T Consensus 50 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 128 (162)
T cd04157 50 FDMSGQGK-YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQL 128 (162)
T ss_pred EECCCCHh-hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHH
Confidence 44788853 22233456899999999999987643211 122211 136899999999999764333333333
Q ss_pred Hh-----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 97 FD-----SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 97 ~~-----~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
+. .....++.+||+++.|+++++++|.
T Consensus 129 l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 129 LGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred hCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 31 1122478899999999999999874
No 138
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.30 E-value=1.9e-06 Score=82.35 Aligned_cols=24 Identities=38% Similarity=0.611 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|+|||||+|+|++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~ 26 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFN 26 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHc
Confidence 457899999999999999999997
No 139
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.1e-06 Score=88.80 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=75.4
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhccCCCCEEEEEEcCCCCCh--hhHH-HHHHHHhh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQLSAKRRVIALNKKDLANP--NILN-KWVRHFDS 99 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~~~~kp~IiVlNK~DL~~~--~~~~-~~~~~~~~ 99 (375)
.-.=|||..-+- +..+.+..||-+|+||||......+-. ....+..+-.+|.|+||+|+... +... ...+.|..
T Consensus 129 LIDTPGHvDFs~-EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 129 LIDTPGHVDFSG-EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred eecCCCcccccc-eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 345699976554 466789999999999999876544311 11122467789999999999643 3333 34455545
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKEV 129 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~ 129 (375)
.+.+++.+|+++|.++.++++++.+.++..
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 566899999999999999999999888754
No 140
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.29 E-value=1.4e-06 Score=73.94 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
++|+++|.||||||||+|.|.+. +... ..+..|.+.....+..... -.+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG-----------KFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC-----------cCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 47999999999999999999861 1111 1223334443333333221 247899999973
No 141
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.29 E-value=2.3e-06 Score=76.42 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=65.1
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|.+|+|+|+..+.+- ....+.++ ..++|+++|+||+|+......++..+.+.
T Consensus 66 ~D~~G~~~-~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~ 144 (184)
T smart00178 66 FDLGGHQQ-ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG 144 (184)
T ss_pred EECCCCHH-HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcC
Confidence 34688743 233345678999999999999875321 11122222 25789999999999864322333333431
Q ss_pred --h----------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 --S----------CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 --~----------~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+ ....++.+||+++.|+++++++|.+.
T Consensus 145 l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 145 LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1 12258899999999999999998653
No 142
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.29 E-value=2.5e-06 Score=75.03 Aligned_cols=96 Identities=15% Similarity=0.010 Sum_probs=61.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+... .......++++|++|+|+|+..+.+-. ...+.+. ..+.|+++|.||+|+......++..+++.
T Consensus 59 Dt~G~~~~-~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~ 137 (168)
T cd04149 59 DVGGQDKI-RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL 137 (168)
T ss_pred ECCCCHHH-HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC
Confidence 36888432 222345679999999999998763321 1122222 24589999999999964322223333321
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.....++.+||+++.|+++++++|.
T Consensus 138 ~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 138 TRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1223578899999999999998875
No 143
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.27 E-value=1.8e-06 Score=74.50 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
++++++|.+|||||||+|+|.+. .......+.+|.+.....+.+... -.+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD----------TFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC----------CCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999961 111234455555554444434321 147889999964
No 144
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.27 E-value=7.9e-06 Score=86.08 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=79.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhC
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDSC 100 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~ 100 (375)
-.-|||.. ....+...++.+|.+|+|+|++.+....... +... ..+.|+++|+||+|+..... .+++.+.+.-.
T Consensus 79 iDTPGh~d-F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 79 IDTPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID 157 (600)
T ss_pred EECCCcHH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC
Confidence 34699965 4455778899999999999998765543221 1111 35789999999999964322 12232322111
Q ss_pred CCcEEEEecCCccCHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChHH
Q 017187 101 KQDYIAINAHSRSSVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKSA 150 (375)
Q Consensus 101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKSs 150 (375)
..+++++||+++.|+++|++++.+.++... ....+++..++- -|++|+-+
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~ 211 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVV 211 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEE
Confidence 124899999999999999999988877542 223344444432 24555543
No 145
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.27 E-value=9.7e-06 Score=81.64 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=68.2
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVl 79 (375)
..||+++..........+ +-.-|||. +-.+.+...+..+|++|+|+|+..+..........+ ...+++++|+
T Consensus 62 ~~rgiTid~~~~~~~~~~~~~~liDtPGh~-~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivvi 140 (406)
T TIGR02034 62 REQGITIDVAYRYFSTDKRKFIVADTPGHE-QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAV 140 (406)
T ss_pred hcCCcCeEeeeEEEccCCeEEEEEeCCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEE
Confidence 345554443333333322 33469995 455667788999999999999988765544322222 3445678899
Q ss_pred EcCCCCChh--hHHH----HHHHHhhCC---CcEEEEecCCccCHHH
Q 017187 80 NKKDLANPN--ILNK----WVRHFDSCK---QDYIAINAHSRSSVQK 117 (375)
Q Consensus 80 NK~DL~~~~--~~~~----~~~~~~~~g---~~vi~iSa~~~~gvk~ 117 (375)
||+|+.+.. ..+. +.++++..+ .+++++|+.++.|+.+
T Consensus 141 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 141 NKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred EecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 999997532 2222 222222223 3689999999988764
No 146
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.27 E-value=2.1e-06 Score=74.14 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV 203 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi 203 (375)
++++++|.+|||||||+|+|.+. .......+..|.+.....+.+.... .+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN----------EFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 58999999999999999999971 1111233444443322233333221 3678999995
No 147
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.26 E-value=6.7e-06 Score=71.44 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=56.2
Q ss_pred hcCeEEEEEeCCCCCCCC-ch---hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHH
Q 017187 45 ISDLVIEVRDSRIPLSSA-HP---GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQK 117 (375)
Q Consensus 45 ~~DlVI~VvDar~p~s~~-~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~ 117 (375)
.+|++|+|+|+..+.+.. .. .+... ..+.|+++|+||+|+.+........++....+.+++.+||+++.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 369999999998654321 11 11122 237899999999999865544332233323356789999999999999
Q ss_pred HHHHHHHHH
Q 017187 118 LLELVELKL 126 (375)
Q Consensus 118 Ll~~L~~~l 126 (375)
+++++.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999887653
No 148
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.25 E-value=2.3e-06 Score=89.93 Aligned_cols=54 Identities=39% Similarity=0.608 Sum_probs=42.4
Q ss_pred cCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 142 GVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 142 G~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
|.||||||||+|+|.+ ....+++.||+|.+.....+. ++..+.++||||.....
T Consensus 1 G~pNvGKSSL~N~Ltg------------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~ 55 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG------------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT 55 (591)
T ss_pred CCCCCCHHHHHHHHhC------------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC
Confidence 8999999999999996 335788999999987643222 23468899999997654
No 149
>COG2262 HflX GTPases [General function prediction only]
Probab=98.25 E-value=1.4e-06 Score=85.66 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=44.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
...-..|.+||++|+|||||+|+|.+. ...+.+....|-+... +.+..+..+.+-||-||...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~------------~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGA------------DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhcc------------CeeccccccccccCceeEEEeCCCceEEEecCccCccc
Confidence 345678999999999999999999962 2333333444444432 33555567999999999863
No 150
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.25 E-value=2.3e-06 Score=74.81 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
....+++++|.+|||||||+|.|.+. ......+..|.+... +... +..+.++||||..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~-----------~~~~~~~t~g~~~~~--i~~~-~~~~~~~D~~G~~ 69 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE-----------DISHITPTQGFNIKT--VQSD-GFKLNVWDIGGQR 69 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC-----------CCcccCCCCCcceEE--EEEC-CEEEEEEECCCCH
Confidence 45789999999999999999999971 222333444543322 2222 2357889999964
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.24 E-value=9.6e-06 Score=70.27 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=65.1
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHh--
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFD-- 98 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~-- 98 (375)
+-..|||... .......+..+|++++|+|+..+........... ..++|+++|+||+|+.... .....+..+.
T Consensus 54 iiDtpG~~~~-~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 132 (168)
T cd01887 54 FIDTPGHEAF-TNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ 132 (168)
T ss_pred EEeCCCcHHH-HHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc
Confidence 3447898542 1222346789999999999986543222111111 3578999999999997532 1112222111
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
....+++.+|++++.|++++++++.++.
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1134789999999999999999987764
No 152
>CHL00071 tufA elongation factor Tu
Probab=98.24 E-value=1.1e-05 Score=81.36 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=82.1
Q ss_pred hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEc
Q 017187 9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNK 81 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK 81 (375)
||+++....+.+...+ +-.-|||. +-++.+...+..+|++++|+|++.+.......+..+ ..++| +|+++||
T Consensus 59 rg~T~~~~~~~~~~~~~~~~~iDtPGh~-~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 59 RGITINTAHVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCEeEEccEEEEccCCeEEEEEECCChH-HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 6666554444444332 45689985 667778888999999999999987665443333333 35678 6688999
Q ss_pred CCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc------------------CHHHHHHHHHHHHhhh-hcc
Q 017187 82 KDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS------------------SVQKLLELVELKLKEV-ISR 132 (375)
Q Consensus 82 ~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~------------------gvk~Ll~~L~~~l~~~-~~~ 132 (375)
+|+++.+... +..++++..+ .+++++|+.++. ++..|++.+...++.. ...
T Consensus 138 ~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~ 217 (409)
T CHL00071 138 EDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDT 217 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCC
Confidence 9998754321 2334443333 468899988764 2456666666554321 122
Q ss_pred CCceEEEEEc
Q 017187 133 EPTLLVMVVG 142 (375)
Q Consensus 133 ~~~~~v~vvG 142 (375)
..++++.|-.
T Consensus 218 ~~p~r~~I~~ 227 (409)
T CHL00071 218 DKPFLMAIED 227 (409)
T ss_pred CCCEEEEEEE
Confidence 3445554444
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.24 E-value=9.5e-06 Score=85.41 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhh---HHHHHHHHhh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNI---LNKWVRHFDS 99 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~ 99 (375)
+-.-|||.. ....+...++.||.+|+|+|+..+.+..... +... ..+.|+++|+||+|+..... .+++.+.+.-
T Consensus 74 liDTPG~~d-F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~ 152 (595)
T TIGR01393 74 LIDTPGHVD-FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL 152 (595)
T ss_pred EEECCCcHH-HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC
Confidence 345799964 4456778899999999999998765543221 2111 35689999999999964321 1233333311
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChHH
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKSA 150 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKSs 150 (375)
...+++++||+++.|+++|++.+.+.++... ....+++..|.- -|+.|+-+
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~ 207 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVA 207 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEE
Confidence 1124789999999999999999988877541 223344444433 24555533
No 154
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.23 E-value=2.7e-06 Score=74.62 Aligned_cols=101 Identities=20% Similarity=0.099 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+. +........+..+|++++|+|+..+.+- ....+..+ ..+.|+++|.||+||.+....+...+++.
T Consensus 49 Dt~G~~-~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 127 (169)
T cd04158 49 DVGGKH-KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL 127 (169)
T ss_pred ECCCCh-hcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCC
Confidence 467763 2223344667999999999999765322 11122222 23479999999999975433333333332
Q ss_pred -hC----CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 -SC----KQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 -~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+. ...++.+||+++.|+++++++|.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 128 HKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred ccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 11 1246678999999999999999776654
No 155
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.23 E-value=4.1e-06 Score=72.82 Aligned_cols=95 Identities=20% Similarity=0.104 Sum_probs=60.1
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-- 98 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 98 (375)
.||+- +........++.+|++|+|+|+..+.+- ....+.+. ....|+++|.||+||.+.....+....+.
T Consensus 51 ~~G~~-~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 129 (159)
T cd04150 51 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLH 129 (159)
T ss_pred CCCCH-hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 58873 2223334568999999999999764321 11122222 23589999999999965422223222221
Q ss_pred ---hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 ---SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.....++.+||+++.|+++++++|.
T Consensus 130 ~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 130 SLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred ccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1223466799999999999998874
No 156
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.23 E-value=4.2e-06 Score=72.27 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=61.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+-.. .......++.+|++|+|+|+..+.+.. ...+... ..++|+++|+||+|+.+.....+....+.
T Consensus 49 Dt~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~ 127 (158)
T cd04151 49 DLGGQTSI-RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL 127 (158)
T ss_pred ECCCCHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc
Confidence 37887321 122235688999999999997653211 1122221 24689999999999975432233333331
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
..+.+++++||+++.|++++++++.
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 128 SELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred cccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 1224689999999999999998874
No 157
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.23 E-value=2.7e-06 Score=74.43 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV 203 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi 203 (375)
.++++++|.||||||||+|.+.+ .+... ..+..|.+.....+.+.... .+.++||||.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD-----------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc-----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 47899999999999999999986 11111 12223443333333343322 4789999994
No 158
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.23 E-value=4.9e-06 Score=71.83 Aligned_cols=98 Identities=14% Similarity=-0.009 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..|||.. ...-....++.+|.+++|+|+..+.+-.. ..+..+ ..+.|+++|+||+|+.+... .+...++.
T Consensus 56 Dt~G~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~ 134 (164)
T cd04145 56 DTAGQEE-FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA 134 (164)
T ss_pred ECCCCcc-hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH
Confidence 4688742 22234466889999999999976533211 111111 24679999999999975422 12222333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+..+.+++.+||+++.|++++++.+.+.
T Consensus 135 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 135 RKLKIPYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred HHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence 3446688999999999999999888654
No 159
>PLN03118 Rab family protein; Provisional
Probab=98.23 E-value=2.7e-06 Score=77.58 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
..++++|+|.+|||||||+|+|.. .......+..|++.....+.+... -.+.++||||...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFIS-----------SSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHh-----------CCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 457899999999999999999996 122233344444443334444322 2478999999643
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.23 E-value=4.1e-06 Score=71.73 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=57.7
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLEL 121 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~ 121 (375)
+.+|++|+|+|++.+.... ..+... ..++|+++|+||+|+.+......+.+.+. ..+.+++.+|+.++.|++++++.
T Consensus 73 ~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 73 EKPDLIVNVVDATNLERNL-YLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred CCCcEEEEEeeCCcchhHH-HHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 5999999999998653221 122222 35789999999999986543333333332 34668999999999999999988
Q ss_pred HHHH
Q 017187 122 VELK 125 (375)
Q Consensus 122 L~~~ 125 (375)
+...
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8664
No 161
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.22 E-value=7.1e-06 Score=70.71 Aligned_cols=101 Identities=12% Similarity=-0.004 Sum_probs=68.6
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc---c-CCCCEEEEEEcCCCCChh--hHHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ---L-SAKRRVIALNKKDLANPN--ILNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~---~-~~kp~IiVlNK~DL~~~~--~~~~~~~~~ 97 (375)
-..||+- +........++.+|++|+|+|++.+.+.... .+... . .+.|+++|.||+|+.... ..+...++.
T Consensus 54 ~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~ 132 (164)
T smart00175 54 WDTAGQE-RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA 132 (164)
T ss_pred EECCChH-HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence 3478863 2234445678899999999999876443211 11121 1 468999999999987532 122233333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+..+.+++.+|+.++.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 133 EEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 445678999999999999999999887654
No 162
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.22 E-value=7.6e-06 Score=71.18 Aligned_cols=101 Identities=19% Similarity=0.043 Sum_probs=66.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-h-Hhhc---c-----CCCCEEEEEEcCCCCChh--hHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-G-LQPQ---L-----SAKRRVIALNKKDLANPN--ILNKWV 94 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~-l~~~---~-----~~kp~IiVlNK~DL~~~~--~~~~~~ 94 (375)
..|||.. ........++++|++|+|+|+..+.+..+. . ...+ . .++|+++|+||+|+.++. ..+...
T Consensus 55 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (172)
T cd01862 55 DTAGQER-FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ 133 (172)
T ss_pred eCCChHH-HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence 5788753 223344678899999999999876432111 1 1111 1 268999999999998322 122333
Q ss_pred HHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 RHFDSCK-QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+.+..+ .+++.+|++++.|++++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 134 QWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444444 578999999999999999998766543
No 163
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.22 E-value=1.1e-06 Score=80.17 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=41.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhh-hccccccccc--------c----------cccccCCCCCeeeeeEEEEE-ccCCcEE
Q 017187 137 LVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK--------T----------KRATVGPLPGVTQDIAGFKI-AHRPSIY 196 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k--------~----------~~~~v~~~pg~T~~~~~~~i-~~~~~~~ 196 (375)
+|+++|.+|+|||||+|+|+.. +.+.....++ . ........+|+|++.....+ ..+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999762 2222100000 0 00111123688888764322 2334689
Q ss_pred EEEcCCCC
Q 017187 197 VLDTPGVL 204 (375)
Q Consensus 197 liDTPGi~ 204 (375)
++||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999973
No 164
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.22 E-value=4.6e-06 Score=83.41 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHhhhcCeEEEEEeCCCC-----CCCCchhHhhc------cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCC--C
Q 017187 37 RAIKHRLKISDLVIEVRDSRIP-----LSSAHPGLQPQ------LSAKRRVIALNKKDLANPNILNKWVRHFD-SCK--Q 102 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p-----~s~~~~~l~~~------~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g--~ 102 (375)
.++.+.++++|++++|+|+... .......+.++ +..+|.++|+||+|+.+.....+.++.+. ..+ .
T Consensus 229 ~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 229 IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEG 308 (390)
T ss_pred HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCC
Confidence 3556789999999999998621 11111111111 13689999999999987654444444432 222 3
Q ss_pred cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 103 DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++++||+++.++++|++.+.+.+++
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 68999999999999999999887765
No 165
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.22 E-value=3e-06 Score=73.14 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|++.+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999997
No 166
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.21 E-value=3.8e-06 Score=72.88 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
.++++++|.||||||||+|++.+. .......+..|++-....+.+... -.+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRN----------EFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 368999999999999999999861 111122222232222222323321 147799999964
No 167
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.20 E-value=4.6e-06 Score=71.87 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+-. ........+..+|++|+|+|++.+.+-. ...+.+. ..+.|+++|+||+|+.......+....+.
T Consensus 50 D~~G~~~-~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 128 (160)
T cd04156 50 DVGGQEK-MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKL 128 (160)
T ss_pred ECCCCHh-HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCC
Confidence 3677632 2222334688999999999998764211 1122222 25789999999999964322223322221
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
..+.+++.+||+++.|+++++++|.
T Consensus 129 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 129 KKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 1233578899999999999988874
No 168
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.20 E-value=6.5e-06 Score=73.42 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDSC 100 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~ 100 (375)
.||+- +........++++|++|+|+|+.++.+-.+ ..+.++ ..+.|+++|.||+|+......++..+.+.-.
T Consensus 68 ~~Gq~-~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~ 146 (181)
T PLN00223 68 VGGQD-KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 146 (181)
T ss_pred CCCCH-HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 68872 222223445899999999999986532211 122222 2468999999999997654444444443211
Q ss_pred -----CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 101 -----KQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 101 -----g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
...++.+||++++|+++++++|.+.+.
T Consensus 147 ~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 147 SLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 113456899999999999999977654
No 169
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.20 E-value=2.7e-06 Score=74.81 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...++++++|.+|||||||+|+|.+. ....+.+..|.... .+.+. .-.+.++||||..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~-----------~~~~~~~t~g~~~~--~~~~~-~~~l~l~D~~G~~ 69 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE-----------DIDTISPTLGFQIK--TLEYE-GYKLNIWDVGGQK 69 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC-----------CCCCcCCccccceE--EEEEC-CEEEEEEECCCCH
Confidence 55689999999999999999999861 11223333332221 22232 2357899999964
No 170
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.19 E-value=4.4e-06 Score=72.04 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|++.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 171
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.19 E-value=9.4e-06 Score=69.84 Aligned_cols=99 Identities=12% Similarity=-0.040 Sum_probs=66.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCCh--hhHHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANP--NILNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~--~~~~~~~~~~ 97 (375)
+.||+-. ........++.+|.+++|+|...+.+-. ...+..+ ..++|+++|+||+|+.+. .......+..
T Consensus 54 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~ 132 (164)
T cd04139 54 DTAGQED-YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA 132 (164)
T ss_pred ECCChhh-hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH
Confidence 4677643 2233445788999999999987653211 1122222 146899999999999762 1222333333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.+.+.+++.+|++++.|++++++.+.+.+
T Consensus 133 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 133 RQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred HHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999887655
No 172
>PRK12735 elongation factor Tu; Reviewed
Probab=98.18 E-value=2.1e-05 Score=79.01 Aligned_cols=135 Identities=14% Similarity=0.078 Sum_probs=83.8
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVl 79 (375)
..||+++....+.+...+ +-.-|||. +-++.+...+..+|++++|+|+.............. ..++|.+ +++
T Consensus 57 ~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvv 135 (396)
T PRK12735 57 KARGITINTSHVEYETANRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL 135 (396)
T ss_pred HhcCceEEEeeeEEcCCCcEEEEEECCCHH-HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 467776665555554443 34689994 566778888999999999999987544332222222 3467866 579
Q ss_pred EcCCCCChhhHH-----HHHHHHhhC-----CCcEEEEecCCc----------cCHHHHHHHHHHHHhhh-hccCCceEE
Q 017187 80 NKKDLANPNILN-----KWVRHFDSC-----KQDYIAINAHSR----------SSVQKLLELVELKLKEV-ISREPTLLV 138 (375)
Q Consensus 80 NK~DL~~~~~~~-----~~~~~~~~~-----g~~vi~iSa~~~----------~gvk~Ll~~L~~~l~~~-~~~~~~~~v 138 (375)
||+|+++.+... +..+++... ..+++++|+.++ .++..|++.+...++.. .....++++
T Consensus 136 NK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~ 215 (396)
T PRK12735 136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLM 215 (396)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEE
Confidence 999998543221 222333322 256889999887 36788888887765422 222334554
Q ss_pred EEEc
Q 017187 139 MVVG 142 (375)
Q Consensus 139 ~vvG 142 (375)
.|-.
T Consensus 216 ~I~~ 219 (396)
T PRK12735 216 PIED 219 (396)
T ss_pred EEEE
Confidence 4443
No 173
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.17 E-value=2.3e-05 Score=78.61 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=75.5
Q ss_pred HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EE
Q 017187 6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IA 78 (375)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iV 78 (375)
-..||+++....+.+...+ +-.-|||. +.+..+...+..+|++++|+|++.+..........+ ..+.|.+ +|
T Consensus 56 E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvv 134 (394)
T TIGR00485 56 EKARGITINTAHVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVF 134 (394)
T ss_pred HHhcCcceeeEEEEEcCCCEEEEEEECCchH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 3457887776666665443 34689995 456777777889999999999987544332222222 3467765 68
Q ss_pred EEcCCCCChhhHH-----HHHHHHhhCC-----CcEEEEecCCcc--------CHHHHHHHHHHHH
Q 017187 79 LNKKDLANPNILN-----KWVRHFDSCK-----QDYIAINAHSRS--------SVQKLLELVELKL 126 (375)
Q Consensus 79 lNK~DL~~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~~~--------gvk~Ll~~L~~~l 126 (375)
+||+|+++.+... +..++++..+ .+++++|+.++. ++..+++.+...+
T Consensus 135 vNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 135 LNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred EEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 9999998643221 2333343322 578999998763 2345555555443
No 174
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.17 E-value=1.4e-05 Score=81.06 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=67.8
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh------HhhccCCCCEEE
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG------LQPQLSAKRRVI 77 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~------l~~~~~~kp~Ii 77 (375)
.||+++......+...+ +-.-|||. +-++.+...+..+|++|+|+|++.+.+...+. +.+.....++|+
T Consensus 68 ~rg~Tid~~~~~~~~~~~~i~iiDtpGh~-~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIV 146 (426)
T TIGR00483 68 ERGVTIDVAHWKFETDKYEVTIVDCPGHR-DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIV 146 (426)
T ss_pred hcCceEEEEEEEEccCCeEEEEEECCCHH-HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEE
Confidence 34555444444444433 34589984 45566777789999999999998763222221 111133356888
Q ss_pred EEEcCCCCC--hhhH----HHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187 78 ALNKKDLAN--PNIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQK 117 (375)
Q Consensus 78 VlNK~DL~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk~ 117 (375)
|+||+|+.+ ++.. +++.++++..+ .+++++||+++.|+.+
T Consensus 147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999999974 2221 23334443333 4689999999998875
No 175
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.17 E-value=2.8e-06 Score=80.82 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=68.1
Q ss_pred ccccch-----hHHHHH-HHHHHHhhhcCeEEEEEeCCCCCCCCch---------hHhhc---cCCCCEEEEEEcCCCCC
Q 017187 25 INWFPG-----HMAAAT-RAIKHRLKISDLVIEVRDSRIPLSSAHP---------GLQPQ---LSAKRRVIALNKKDLAN 86 (375)
Q Consensus 25 ~~wfpg-----Hm~k~~-~~i~~~l~~~DlVI~VvDar~p~s~~~~---------~l~~~---~~~kp~IiVlNK~DL~~ 86 (375)
+-..|| ||++++ -+..+-+++|+.+++|+|...+.. +++ +++-+ +..+|.++|+||+|+.+
T Consensus 248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 445665 888877 467788999999999999875421 111 11112 46799999999999953
Q ss_pred hhh--HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 87 PNI--LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 87 ~~~--~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.+. ++++.++++ +..++++||++++++.+|++.++..
T Consensus 327 ae~~~l~~L~~~lq--~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 327 AEKNLLSSLAKRLQ--NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HHHHHHHHHHHHcC--CCcEEEeeeccccchHHHHHHHhhc
Confidence 322 133333332 2358999999999999999887653
No 176
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=3.5e-06 Score=83.92 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=102.4
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc----cCCCCEEEEEEcCCCCCh--hhHHH-HHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ----LSAKRRVIALNKKDLANP--NILNK-WVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~----~~~kp~IiVlNK~DL~~~--~~~~~-~~~~~~ 98 (375)
-.=|||..-.-+ ..+.++.|.-.++|+||......+ -+.+. ..+-.+|-|+||+||... +.... ..+.+.
T Consensus 81 IDTPGHVDFsYE-VSRSLAACEGalLvVDAsQGveAQ--TlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG 157 (603)
T COG0481 81 IDTPGHVDFSYE-VSRSLAACEGALLVVDASQGVEAQ--TLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG 157 (603)
T ss_pred cCCCCccceEEE-ehhhHhhCCCcEEEEECccchHHH--HHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC
Confidence 346999766544 446789999999999998765443 23332 457789999999999643 33322 222221
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL 177 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~ 177 (375)
=....++.+||++|.|++++++.+.+.++.. +....+++.+++ -|...+.++ ..+-+.-.
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALif-------DS~yD~Y~G------------Vv~~vRi~ 218 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIF-------DSWYDNYLG------------VVVLVRIF 218 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEE-------eccccccce------------EEEEEEEe
Confidence 0112578999999999999999999988765 445667777776 233444443 12222223
Q ss_pred CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187 178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~ 209 (375)
.|+-+....+++.....-+-++--|++.|...
T Consensus 219 dG~ik~gdki~~m~tg~~y~V~evGvftP~~~ 250 (603)
T COG0481 219 DGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMV 250 (603)
T ss_pred eceecCCCEEEEEecCCEEEEEEEeeccCCcc
Confidence 34444444444444445667777777777543
No 177
>PRK13768 GTPase; Provisional
Probab=98.17 E-value=7.9e-06 Score=77.06 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHhhh--cCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHHHHh---------
Q 017187 37 RAIKHRLKI--SDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNILNKWVRHFD--------- 98 (375)
Q Consensus 37 ~~i~~~l~~--~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~~~~--------- 98 (375)
+.+.+.+.. .+++++|+|++.+....+.....+ ..++|+++|+||+|+.+....+...+++.
T Consensus 118 ~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l 197 (253)
T PRK13768 118 RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEEL 197 (253)
T ss_pred HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHH
Confidence 344445554 899999999986544333222111 35789999999999987654433332221
Q ss_pred -------------------hCC--CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 -------------------SCK--QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 -------------------~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+.+ .+++++|++++.|+++|++++.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 198 KLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 223 47889999999999999999988764
No 178
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.17 E-value=9.2e-06 Score=70.57 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPNIL--NKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~~~--~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+... . .+.|+++|.||+|+...... +...++.+
T Consensus 57 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 135 (166)
T cd01869 57 DTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD 135 (166)
T ss_pred ECCCcHh-HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH
Confidence 4788753 33334567889999999999976432211 111111 1 46799999999998654321 22223333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
..+.+++.+|++++.|++++++.+.+.+
T Consensus 136 ~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 4466889999999999999999887655
No 179
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.17 E-value=5.9e-06 Score=73.06 Aligned_cols=99 Identities=17% Similarity=0.048 Sum_probs=62.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+- +........++++|++|+|+|+..+.+- ....+.+. ..+.|+++|.||+||.+.....+..+.+.
T Consensus 63 D~~G~~-~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~ 141 (175)
T smart00177 63 DVGGQD-KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL 141 (175)
T ss_pred ECCCCh-hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc
Confidence 367763 2222234557999999999998765321 11122222 23579999999999965322223222221
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.....++.+||+++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 142 HSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1122456799999999999999987654
No 180
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.16 E-value=5.4e-06 Score=72.33 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=65.8
Q ss_pred ccccchhHHHH------HHHHHHHhhhcCeEEEEEeCCCCC-----CCCc--h----hHhhc--------cCCCCEEEEE
Q 017187 25 INWFPGHMAAA------TRAIKHRLKISDLVIEVRDSRIPL-----SSAH--P----GLQPQ--------LSAKRRVIAL 79 (375)
Q Consensus 25 ~~wfpgHm~k~------~~~i~~~l~~~DlVI~VvDar~p~-----s~~~--~----~l~~~--------~~~kp~IiVl 79 (375)
+-..||+.... .+++...+..+|+|++|+|+..+. .... . .+... ..++|+++|+
T Consensus 48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 34467863221 224556788999999999998763 1111 0 11111 1368999999
Q ss_pred EcCCCCChhhHHHHH--HHHhhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 80 NKKDLANPNILNKWV--RHFDSCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 80 NK~DL~~~~~~~~~~--~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
||+|+.+......+. ......+..++.+|++++.|++++++.+..
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 128 NKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 999998766555441 222234557899999999999999888754
No 181
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.16 E-value=6.8e-06 Score=73.21 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=63.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 99 (375)
..|||... .+.....++.+|.+++|+|+..+.+- ....+... ..+.|+++|+||+|+......+...+++..
T Consensus 69 D~~G~~~~-~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~ 147 (190)
T cd00879 69 DLGGHEQA-RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL 147 (190)
T ss_pred ECCCCHHH-HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc
Confidence 36887543 23334568999999999999764221 11122222 245899999999999743333333333321
Q ss_pred ----------------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 100 ----------------CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 100 ----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
....++.+||+++.|++++++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11357889999999999999998654
No 182
>PLN03127 Elongation factor Tu; Provisional
Probab=98.15 E-value=1.7e-05 Score=80.83 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=78.1
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCE-EEEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRR-VIAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~-IiVl 79 (375)
..||+++....+.+...+ +-.-|||. +-+..+...+..+|++++|+|++.+..........+ ..++|. |+|+
T Consensus 106 ~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~-~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvvi 184 (447)
T PLN03127 106 KARGITIATAHVEYETAKRHYAHVDCPGHA-DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFL 184 (447)
T ss_pred hhcCceeeeeEEEEcCCCeEEEEEECCCcc-chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 357777777666666543 45689994 566777778889999999999987765544333333 356785 6789
Q ss_pred EcCCCCChhhHHH-----HHHHHhhC-----CCcEEEEecC---CccC-------HHHHHHHHHHHHh
Q 017187 80 NKKDLANPNILNK-----WVRHFDSC-----KQDYIAINAH---SRSS-------VQKLLELVELKLK 127 (375)
Q Consensus 80 NK~DL~~~~~~~~-----~~~~~~~~-----g~~vi~iSa~---~~~g-------vk~Ll~~L~~~l~ 127 (375)
||+|+++.+...+ +.+++... ..+++++|+. ++.+ +..|++.+.+.++
T Consensus 185 NKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 185 NKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 9999986433221 22222211 2457777765 3333 6788888877665
No 183
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.15 E-value=6.7e-06 Score=72.53 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=61.1
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-- 98 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 98 (375)
.||+-. ..+.....++.+|++++|+|+..+.+.. ...+.+. ..++|+++|+||+|+......++..+.+.
T Consensus 66 ~~G~~~-~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~ 144 (174)
T cd04153 66 IGGQES-LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLT 144 (174)
T ss_pred CCCCHH-HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 688732 2222335588999999999997653211 1112222 23589999999999965322223333331
Q ss_pred ---hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 ---SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
+...+++.+||+++.|+++++++|.
T Consensus 145 ~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 145 SIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cccCCceEEEecccCCCCCHHHHHHHHh
Confidence 2234678999999999999998874
No 184
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.15 E-value=8.3e-06 Score=82.24 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred HHHHHhhhcCeEEEEEeCCCC-----CCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEE
Q 017187 38 AIKHRLKISDLVIEVRDSRIP-----LSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIA 106 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p-----~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~ 106 (375)
+..+.++++|++|+|+|+... ...... ++..+ ..++|.++|+||+||.... +.+.++.+..+.++++
T Consensus 229 ~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~ 306 (424)
T PRK12297 229 QFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFP 306 (424)
T ss_pred HHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEE
Confidence 445667889999999998542 111111 12222 2478999999999985332 1222222223367899
Q ss_pred EecCCccCHHHHHHHHHHHHhh
Q 017187 107 INAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+||+++.|+++|++++.+.+.+
T Consensus 307 iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 307 ISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999877654
No 185
>PRK00049 elongation factor Tu; Reviewed
Probab=98.15 E-value=2.9e-05 Score=77.90 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVl 79 (375)
..||+++....+.....+ +-.-||| .+-++.+...+..+|++++|+|++.+.......+..+ ..++|.+ +++
T Consensus 57 ~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvv 135 (396)
T PRK00049 57 KARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFL 135 (396)
T ss_pred HhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEE
Confidence 456776666555554433 3468999 4667778888999999999999987765544333333 3568876 579
Q ss_pred EcCCCCChhhH-H----HHHHHHhhC-----CCcEEEEecCCcc----------CHHHHHHHHHHHHhhh-hccCCceEE
Q 017187 80 NKKDLANPNIL-N----KWVRHFDSC-----KQDYIAINAHSRS----------SVQKLLELVELKLKEV-ISREPTLLV 138 (375)
Q Consensus 80 NK~DL~~~~~~-~----~~~~~~~~~-----g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~-~~~~~~~~v 138 (375)
||+|+++.+.. + +..+++... ..+++++|+.++. ++..|++.|...++.. .....++++
T Consensus 136 NK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~ 215 (396)
T PRK00049 136 NKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLM 215 (396)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEE
Confidence 99999854321 1 233334332 2468899998753 4677888777655321 222345554
Q ss_pred EEEc
Q 017187 139 MVVG 142 (375)
Q Consensus 139 ~vvG 142 (375)
.|..
T Consensus 216 ~I~~ 219 (396)
T PRK00049 216 PIED 219 (396)
T ss_pred EEEE
Confidence 4443
No 186
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.14 E-value=8.5e-06 Score=70.11 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
.+||+... .......+..+|++++|+|+..+.+... ..+... ..+.|+++|+||+|+.......+..+.+.
T Consensus 49 D~~G~~~~-~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 127 (158)
T cd00878 49 DVGGQDKI-RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGL 127 (158)
T ss_pred ECCCChhh-HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhCh
Confidence 37888542 2234456799999999999987532111 122222 24689999999999986543333333332
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
....+++.+|++++.|+++++++|..
T Consensus 128 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 128 EKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred hhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 12346889999999999999888753
No 187
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.14 E-value=1e-05 Score=72.04 Aligned_cols=100 Identities=16% Similarity=0.037 Sum_probs=62.3
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-- 98 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 98 (375)
.||+-. ........++++|++|+|+|+..+.+-.. ..+.++ ..++|+++|+||+|+............+.
T Consensus 59 t~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~ 137 (183)
T cd04152 59 VGGQEK-LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALH 137 (183)
T ss_pred CCCcHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCcc
Confidence 578621 11122345788999999999976532111 122222 24689999999999864322222222221
Q ss_pred h----CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 S----CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~----~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
. .+.+++++||+++.|++++++++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 138 ELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 1 12357889999999999999998876644
No 188
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.13 E-value=1.3e-05 Score=71.87 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=66.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+..- .......+..+|++|+|+|+..+.+-.+ ..+.+. ..+.|+++|+||+|+..+.. .+......+
T Consensus 56 Dt~G~~~~-~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~ 134 (191)
T cd04112 56 DTAGQERF-RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAK 134 (191)
T ss_pred eCCCcHHH-HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHH
Confidence 57887432 2223456788999999999976532211 111111 23679999999999964321 122222223
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+|++++.|+++++.++.+.+..
T Consensus 135 ~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 135 EYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 445688999999999999999999877755
No 189
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.13 E-value=1.4e-05 Score=80.90 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=66.5
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCC--CCCCCchhHhhc---cCCCCEEEE
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRI--PLSSAHPGLQPQ---LSAKRRVIA 78 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~--p~s~~~~~l~~~---~~~kp~IiV 78 (375)
.+|++.......+...+ +-.-||| .+-++.+...+..+|++|+|+|+.. +..........+ ....++++|
T Consensus 67 ~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivv 145 (425)
T PRK12317 67 ERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVA 145 (425)
T ss_pred hcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEE
Confidence 45665544444443332 3347998 3444556667889999999999987 433332222222 233468899
Q ss_pred EEcCCCCCh--hhH----HHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187 79 LNKKDLANP--NIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQK 117 (375)
Q Consensus 79 lNK~DL~~~--~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk~ 117 (375)
+||+|+.+. +.. ++..+++...+ .+++++||+++.|+.+
T Consensus 146 iNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 146 INKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 999999752 111 22333333333 3689999999999875
No 190
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.13 E-value=1.2e-05 Score=69.33 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=64.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chh---Hhhcc------CCCCEEEEEEcCCCCChh--hHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPG---LQPQL------SAKRRVIALNKKDLANPN--ILNKW 93 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~---l~~~~------~~kp~IiVlNK~DL~~~~--~~~~~ 93 (375)
..||+- +........+..+|++|+|+|.+.+.+-. ... +.+.. .+.|+++|.||+|+.++. .....
T Consensus 55 Dt~G~~-~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 133 (168)
T cd04119 55 DLSGHP-EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEG 133 (168)
T ss_pred ECCccH-HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHH
Confidence 467763 22233445678999999999998753311 111 11211 357899999999997322 12223
Q ss_pred HHHHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
..+.++.+.+++.+||+++.|++++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 134 RLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 333334567889999999999999999987653
No 191
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.13 E-value=6.4e-06 Score=71.88 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
.++|+++|.||||||||+|++.+. . -.....+..|++.....+.+... -.+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~-~---------f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED-S---------FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC-c---------CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 478999999999999999999861 0 01111222233332223333322 146789999953
No 192
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.13 E-value=5.3e-06 Score=71.64 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.||||||||+|.|.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999986
No 193
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.13 E-value=9.6e-06 Score=68.87 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
.+||+- +........+..+|++++|+|++.+.+... ..+.+. ..++|+++|+||+|+.+......+...+.
T Consensus 50 D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 128 (159)
T cd04159 50 DLGGQP-RFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL 128 (159)
T ss_pred ECCCCH-hHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc
Confidence 378873 222334567899999999999976432110 112222 24689999999999976544433333331
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
....+++.+|++++.|++++++++.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 129 KSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 12346789999999999999988754
No 194
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.12 E-value=1.7e-05 Score=69.10 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=65.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
..||+... .......++.+|++++|+|...+.+-. .+.++ ....|+++|.||+||.+... .+...++
T Consensus 56 Dt~g~~~~-~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 132 (165)
T cd01865 56 DTAGQERY-RTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQL 132 (165)
T ss_pred ECCChHHH-HHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 47777432 222345689999999999987543211 12221 13578999999999975422 2222333
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+..+.+++.+||+++.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 133 ADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345668899999999999999999877653
No 195
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.12 E-value=2.7e-05 Score=79.88 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=67.4
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhccCCCCEEEEEE
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQLSAKRRVIALN 80 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~~~~kp~IiVlN 80 (375)
.||+++.-....+.... +-.-|||. +-.+.+...+..+|++++|+|+..+...... .+......+++|+|+|
T Consensus 90 ~rgiTid~~~~~~~~~~~~i~~iDTPGh~-~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvN 168 (474)
T PRK05124 90 EQGITIDVAYRYFSTEKRKFIIADTPGHE-QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVN 168 (474)
T ss_pred hcCCCeEeeEEEeccCCcEEEEEECCCcH-HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEE
Confidence 45555443333333322 33479985 4455667778999999999999876544322 2222244467889999
Q ss_pred cCCCCCh--hhHHHHHHH----HhhC----CCcEEEEecCCccCHHH
Q 017187 81 KKDLANP--NILNKWVRH----FDSC----KQDYIAINAHSRSSVQK 117 (375)
Q Consensus 81 K~DL~~~--~~~~~~~~~----~~~~----g~~vi~iSa~~~~gvk~ 117 (375)
|+|+++. +...+..+. +... ..+++++|++++.|+..
T Consensus 169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 9999842 222222222 2222 35789999999998765
No 196
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.12 E-value=3.5e-06 Score=74.29 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|+|||||+|+|.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~ 21 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLY 21 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 197
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.12 E-value=1.4e-05 Score=70.34 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=65.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. ........++++|++|+|+|+..+.+-.+. .+..+ ..+.|+++|.||+||.+... .+...++.
T Consensus 69 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~ 147 (180)
T cd04127 69 DTAGQER-FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA 147 (180)
T ss_pred eCCChHH-HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence 4788743 333445678999999999999765432211 11111 13578999999999975321 12222333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
++.+.+++.+||+++.|++++++.+.+.+
T Consensus 148 ~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34466889999999999999999987654
No 198
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.12 E-value=7.1e-06 Score=71.29 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++++|.+|||||||+|++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999985
No 199
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.12 E-value=1.3e-05 Score=68.04 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=64.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCC-Chh-hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLA-NPN-ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~-~~~-~~~~~~~~~~ 98 (375)
..||+..- .......++++|++++|+|+..+.+... ..+..+ ....|+++|+||+|+. +.. ..+...++..
T Consensus 55 D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 133 (159)
T cd00154 55 DTAGQERF-RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK 133 (159)
T ss_pred ecCChHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH
Confidence 57887432 2345677899999999999976432111 111111 1358999999999996 322 2233444444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
..+.+++.+|++++.|++++++++.
T Consensus 134 ~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 134 ENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HcCCeEEEEecCCCCCHHHHHHHHh
Confidence 4567899999999999999988764
No 200
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.12 E-value=7e-06 Score=70.85 Aligned_cols=23 Identities=48% Similarity=0.476 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++++|.||||||||+|++.+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh
Confidence 46899999999999999999986
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.11 E-value=2e-05 Score=72.45 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=57.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC----CCchhHh---hc---cCCCCEEEEEEcCCCCC----hhhH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS----SAHPGLQ---PQ---LSAKRRVIALNKKDLAN----PNIL 90 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s----~~~~~l~---~~---~~~kp~IiVlNK~DL~~----~~~~ 90 (375)
+-..|||.. -...+...+..+|++|+|+|+..+.. ....+.. .. ...+|+++|+||+|+.. +...
T Consensus 81 liDtpG~~~-~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRD-FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHH-HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 345899954 34566677889999999999987421 1111111 11 23467888999999983 2222
Q ss_pred HHHH----HHHhhC-----CCcEEEEecCCccCHH
Q 017187 91 NKWV----RHFDSC-----KQDYIAINAHSRSSVQ 116 (375)
Q Consensus 91 ~~~~----~~~~~~-----g~~vi~iSa~~~~gvk 116 (375)
.... ..+... ..+++++||+++.|++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2222 233332 2468999999999976
No 202
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.11 E-value=8.1e-06 Score=70.93 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 203
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.10 E-value=3.4e-06 Score=75.69 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc-------------cCCcEEEEEc
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA-------------HRPSIYVLDT 200 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~-------------~~~~~~liDT 200 (375)
++|+++|.+|||||||+|+|.+.+... .-........+|+|.+... +.+. ....+.++||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~-----~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 75 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTA-----AFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC 75 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchh-----hhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEEC
Confidence 479999999999999999998621100 0011222334577776642 2222 1335889999
Q ss_pred CCCC
Q 017187 201 PGVL 204 (375)
Q Consensus 201 PGi~ 204 (375)
||..
T Consensus 76 pG~~ 79 (192)
T cd01889 76 PGHA 79 (192)
T ss_pred CCcH
Confidence 9973
No 204
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.10 E-value=4.9e-06 Score=77.91 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~ 207 (375)
.....++++|.+|||||||||.+... ...+. +++.||-|+.++.+.+... .+++|.||+...+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~----------k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRV----------KNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhh----------hhhhhhcCCCCccceeeeeeeccce--EEEEecCCccccc
Confidence 55678999999999999999999973 12233 3348999999998877654 8999999965433
No 205
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.10 E-value=1.3e-05 Score=68.64 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=63.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~ 98 (375)
..||+- +...-....++.+|.+++|+|...+.+-.+ .. +.+. ..+.|+++|.||+|+..... .....++.+
T Consensus 55 Dt~G~~-~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 133 (162)
T cd04138 55 DTAGQE-EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK 133 (162)
T ss_pred ECCCCc-chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH
Confidence 356652 222223356789999999999875432111 11 1121 24689999999999976432 223333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
..+.+++.+||+++.|++++++++.+.
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 134 SYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred HhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 456688999999999999999888654
No 206
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=4.5e-06 Score=81.47 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEE-----------cc-C-----CcE
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKI-----------AH-R-----PSI 195 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i-----------~~-~-----~~~ 195 (375)
.+++++||.||||||||+|+|.. ..+..+++|.+|.++.. ..+ .. . -.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~------------~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~v 69 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTK------------AGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPV 69 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHc------------CCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeee
Confidence 35799999999999999999996 23778899999988752 111 11 1 137
Q ss_pred EEEEcCCCCCC
Q 017187 196 YVLDTPGVLVP 206 (375)
Q Consensus 196 ~liDTPGi~~~ 206 (375)
.++|.+|+..-
T Consensus 70 e~vDIAGLV~G 80 (372)
T COG0012 70 EFVDIAGLVKG 80 (372)
T ss_pred EEEEecccCCC
Confidence 89999999753
No 207
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.10 E-value=1.1e-05 Score=70.73 Aligned_cols=87 Identities=16% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch--hHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP--GLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..+..+|++|+|+|...+.+-.+. .+..+ ..+.|+++|.||+|+..........++.+..+.+++.+||+++.|+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 456789999999999865433211 11111 3379999999999997433222222333344567899999999999
Q ss_pred HHHHHHHHHHHh
Q 017187 116 QKLLELVELKLK 127 (375)
Q Consensus 116 k~Ll~~L~~~l~ 127 (375)
+++++++.+.+.
T Consensus 148 ~~~f~~l~~~~~ 159 (166)
T cd00877 148 EKPFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999977654
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.10 E-value=3.6e-05 Score=68.69 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=60.6
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQK 117 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~ 117 (375)
..++++++|+|+..+.+.....+.++ ..+.|+++|+||+|+.+....+. +.+.+......++++|++++.|+++
T Consensus 105 ~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 105 ENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDE 184 (196)
T ss_pred ccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHH
Confidence 34578999999887765543333333 34688999999999987544332 2233332246789999999999999
Q ss_pred HHHHHHHHHhh
Q 017187 118 LLELVELKLKE 128 (375)
Q Consensus 118 Ll~~L~~~l~~ 128 (375)
+.+.+.+.+++
T Consensus 185 l~~~i~~~~~~ 195 (196)
T PRK00454 185 LRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHhcC
Confidence 99999877643
No 209
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.10 E-value=1.1e-05 Score=69.39 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=65.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChh-hHHH-HHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPN-ILNK-WVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~-~~~~-~~~~~~ 98 (375)
..||+.. ....+...+..+|++++|+|+..+.+-.+ ..+..+ . .+.|+++|+||+|+.... ...+ .....+
T Consensus 55 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd01861 55 DTAGQER-FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK 133 (161)
T ss_pred ECCCcHH-HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH
Confidence 3788743 33445667899999999999976533211 122222 1 248999999999995332 2222 223333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
..+..++.+|++++.|++++.+++.+.
T Consensus 134 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 134 ELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 446788999999999999999988653
No 210
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.09 E-value=1.6e-05 Score=68.58 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. -..-....++.+|.+++|+|+..+.+.. .+..+ ..+.|+++|+||+|+..... .++...+.
T Consensus 57 D~~G~~~-~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~ 133 (162)
T cd04106 57 DTAGQEE-FDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA 133 (162)
T ss_pred eCCchHH-HHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH
Confidence 4688632 2223345689999999999987654321 12221 34789999999999975432 12233334
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+..+.+++.+|++++.|++++++++..
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445678899999999999999888764
No 211
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.09 E-value=7.5e-06 Score=78.35 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
-.+++||+|.+|+|||||||+|++
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~ 26 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFN 26 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999998
No 212
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.09 E-value=2e-05 Score=68.47 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=64.4
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
-..|||.. .....+..+..+|++++|+|+..+.+-.. ..+..+ ..+.|+++|.||+|+..... .+...+..
T Consensus 57 ~D~~G~~~-~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01864 57 WDTAGQER-FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLA 135 (165)
T ss_pred EECCChHH-HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 36899843 23334567889999999999987643211 122222 23578999999999975421 12222222
Q ss_pred hhCC-CcEEEEecCCccCHHHHHHHHHHH
Q 017187 98 DSCK-QDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 98 ~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+..+ ..++.+||+++.|++++++.+.+.
T Consensus 136 ~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 136 EKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 2333 357899999999999999887653
No 213
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.09 E-value=1.1e-05 Score=71.88 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
....+++++|.+|||||||+|.+.+ .+.+.+.+..+.+. ..+.+. +..+.++||||..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~~~D~~G~~ 72 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN-----------DRLAQHQPTQHPTS--EELAIG-NIKFTTFDLGGHQ 72 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccccce--EEEEEC-CEEEEEEECCCCH
Confidence 4568899999999999999999986 12222222222222 122222 2357899999974
No 214
>PTZ00099 rab6; Provisional
Probab=98.09 E-value=1.5e-05 Score=70.99 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=66.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+-.+ ..+... ....|+++|.||+||.... ...+...+..
T Consensus 35 Dt~G~e~-~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~ 113 (176)
T PTZ00099 35 DTAGQER-FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ 113 (176)
T ss_pred ECCChHH-hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence 3677743 33334457899999999999876533211 222222 1356789999999996421 1222233333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+..++.+||+++.|++++++++.+.+++
T Consensus 114 ~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 114 EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345567889999999999999999888765
No 215
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.09 E-value=1.5e-05 Score=72.74 Aligned_cols=92 Identities=24% Similarity=0.253 Sum_probs=58.4
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCC-CCEEEEEEcCCCCChhh--H----HHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSA-KRRVIALNKKDLANPNI--L----NKWVR 95 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~-kp~IiVlNK~DL~~~~~--~----~~~~~ 95 (375)
+-.-|||.. ....+...+..+|++|+|+|+..+..........+ ..+ +++|+|+||+|+..... . .+..+
T Consensus 81 liDTpG~~~-~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 81 IADTPGHEQ-YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred EEECCcHHH-HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 345899853 33456677899999999999987754433222222 223 45677899999974221 1 12222
Q ss_pred HHhhCC---CcEEEEecCCccCHHH
Q 017187 96 HFDSCK---QDYIAINAHSRSSVQK 117 (375)
Q Consensus 96 ~~~~~g---~~vi~iSa~~~~gvk~ 117 (375)
.+...+ .+++++||+++.|+.+
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCcc
Confidence 222333 3589999999998765
No 216
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.09 E-value=7.5e-06 Score=71.23 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|+|.+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999986
No 217
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.08 E-value=1.6e-05 Score=68.71 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+..- .......++.+|.+++|+|+..+.+-.+ ..+.+. ..+.|+++|.||+|+.+... .+...++.
T Consensus 54 Dt~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~ 132 (164)
T smart00173 54 DTAGQEEF-SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA 132 (164)
T ss_pred ECCCcccc-hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH
Confidence 36776432 1222356789999999999986533211 111111 23679999999999975321 12222233
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+..+.+++.+||+++.|++++++.+.+.+.
T Consensus 133 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 133 RQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 344567899999999999999999876553
No 218
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.08 E-value=2.5e-05 Score=79.51 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCC-CC---CCchhHhhc-----cCC
Q 017187 6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIP-LS---SAHPGLQPQ-----LSA 72 (375)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p-~s---~~~~~l~~~-----~~~ 72 (375)
-..||+++......+...+ +-.-||| .+.++.+...+..+|.+|+|+|+... +. ....+..+. ..+
T Consensus 66 Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g 144 (447)
T PLN00043 66 ERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144 (447)
T ss_pred HHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC
Confidence 3467777666666655544 3458999 45667788889999999999999863 11 011222222 235
Q ss_pred CC-EEEEEEcCCCCChh--------hHHHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187 73 KR-RVIALNKKDLANPN--------ILNKWVRHFDSCK-----QDYIAINAHSRSSVQ 116 (375)
Q Consensus 73 kp-~IiVlNK~DL~~~~--------~~~~~~~~~~~~g-----~~vi~iSa~~~~gvk 116 (375)
.| +|+++||+|+.+.. ..++..+++++.| .+++++|+.++.++.
T Consensus 145 i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 145 VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 64 67789999987321 1233444554444 468999999998864
No 219
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.08 E-value=1.7e-05 Score=71.70 Aligned_cols=101 Identities=14% Similarity=0.017 Sum_probs=67.7
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
-.+||+... .......+..+|.+++|+|+..+.+-.. ..+..+ ....|+++|.||+|+.+... .+...++.+
T Consensus 60 ~D~~G~~~~-~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~ 138 (199)
T cd04110 60 WDTAGQERF-RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG 138 (199)
T ss_pred EeCCCchhH-HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 358887532 2223456789999999999976543211 112211 34578999999999975422 223333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+..++.+|++++.|++++++++...+.
T Consensus 139 ~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 139 QMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 45678899999999999999999877653
No 220
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.08 E-value=3.3e-05 Score=81.27 Aligned_cols=123 Identities=12% Similarity=0.133 Sum_probs=80.5
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh---hHHHHHHHHh--
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN---ILNKWVRHFD-- 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~-- 98 (375)
-.-|||.. -...+...++.+|.+++|+|+..........+... ..+.|+|+|+||+|+.... ...+..+.+.
T Consensus 69 IDTPGh~D-F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 69 VDTPGHAD-FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL 147 (594)
T ss_pred EECCCHHH-HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence 34799954 44567788999999999999986543322222222 3578999999999996432 2334444442
Q ss_pred -----hCCCcEEEEecCCcc----------CHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChH
Q 017187 99 -----SCKQDYIAINAHSRS----------SVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKS 149 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKS 149 (375)
+..++++++|++++. ++..|++.+.+.++... ....++++.|.- .+.+|+-
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv 217 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRI 217 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceE
Confidence 123578899999885 79999999988887541 223455555543 2556653
No 221
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.07 E-value=5.3e-06 Score=83.96 Aligned_cols=72 Identities=29% Similarity=0.330 Sum_probs=45.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh-hhcccccc----------cccc--ccccc------CCCCCeeeeeEEEEEc-cC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ-IALSRFPV----------QEKT--KRATV------GPLPGVTQDIAGFKIA-HR 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~----------~~k~--~~~~v------~~~pg~T~~~~~~~i~-~~ 192 (375)
...++++++|.+|+|||||+|+|+. .|.+.... .|+. +-+.+ ...+|+|++.....+. .+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 5678999999999999999999985 22221100 0110 00001 1268999998754443 23
Q ss_pred CcEEEEEcCCCC
Q 017187 193 PSIYVLDTPGVL 204 (375)
Q Consensus 193 ~~~~liDTPGi~ 204 (375)
..+.++||||..
T Consensus 84 ~~i~liDtpG~~ 95 (425)
T PRK12317 84 YYFTIVDCPGHR 95 (425)
T ss_pred eEEEEEECCCcc
Confidence 368899999964
No 222
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.1e-05 Score=77.48 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=80.5
Q ss_pred HHhcccccceEEeeCCCcccc----cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC---CCCchhHhhccCCCCEEEEE
Q 017187 7 IKKGLGLGEMGFTKGGGNINW----FPGHMAAATRAIKHRLKISDLVIEVRDSRIPL---SSAHPGLQPQLSAKRRVIAL 79 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~~w----fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~---s~~~~~l~~~~~~kp~IiVl 79 (375)
=+|||+++.+++.+..++++| .||| +..++.|.--.++-|..|+|+.|.+.. +.+...|.+..+-+.+++.+
T Consensus 99 kaRGITIn~aHveYeTa~RhYaH~DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfi 177 (449)
T KOG0460|consen 99 KARGITINAAHVEYETAKRHYAHTDCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFI 177 (449)
T ss_pred hhccceEeeeeeeeeccccccccCCCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEE
Confidence 479999999999999999877 9999 677888888889999999999987633 32323344434444556667
Q ss_pred EcCCCCC-hhhHH----HHHHHHhhCC-----CcEEEEecC---Cc-------cCHHHHHHHHHHHHhh
Q 017187 80 NKKDLAN-PNILN----KWVRHFDSCK-----QDYIAINAH---SR-------SSVQKLLELVELKLKE 128 (375)
Q Consensus 80 NK~DL~~-~~~~~----~~~~~~~~~g-----~~vi~iSa~---~~-------~gvk~Ll~~L~~~l~~ 128 (375)
||.|+++ ++.++ +..+.+.+.| .+++.-||. .+ ..+.+|++.+..+++.
T Consensus 178 NKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 178 NKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 9999994 44322 1222232222 266665653 22 2356677777666654
No 223
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.07 E-value=6.8e-06 Score=70.81 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
+++++|.+|||||||+|.+.+ .......+..|.+.. .........+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~-----------~~~~~~~~t~~~~~~--~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH-----------AELVTTIPTVGFNVE--MLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc-----------CCcccccCccCcceE--EEEeCCceEEEEEECCCCH
Confidence 478999999999999999996 122222333333322 2223333358899999974
No 224
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.07 E-value=2.3e-05 Score=67.72 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=63.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc---cCCCCEEEEEEcCCCCChhhHH--HHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---LSAKRRVIALNKKDLANPNILN--KWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~ 99 (375)
..||+.. ...-....++++|++++|+|...+.+-. ...+..+ ..+.|+++|.||+|+.+..... ....+-..
T Consensus 58 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (164)
T cd04101 58 DSAGQEL-YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA 136 (164)
T ss_pred ECCCHHH-HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence 4677632 2233456789999999999987653221 1112222 2358999999999997543221 11122223
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.+.+++.+|++++.|++++++.+.+.
T Consensus 137 ~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 137 NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 45678899999999999999888654
No 225
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.06 E-value=2e-05 Score=70.34 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=62.7
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh--
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-- 98 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-- 98 (375)
.||+- +........+..+|++|+|+|+..+.+- ....+.+. ....|+++|.||+|+.......+....+.
T Consensus 68 ~~G~~-~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~ 146 (182)
T PTZ00133 68 VGGQD-KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH 146 (182)
T ss_pred CCCCH-hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC
Confidence 68873 2222334568999999999999754321 11122222 23579999999999965332223333331
Q ss_pred ---hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 ---SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.....++.+||+++.|++++++++.+.+..
T Consensus 147 ~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 147 SVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred cccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 111234568999999999999999876543
No 226
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.06 E-value=1.9e-05 Score=71.30 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=66.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc-----cCCCCEEEEEEcCCCCCh--hhHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ-----LSAKRRVIALNKKDLANP--NILNKWV 94 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~-----~~~kp~IiVlNK~DL~~~--~~~~~~~ 94 (375)
..||+.. ........++++|++|+|+|...+.+-.+ ..+.+. ....|+++|.||+||.+. ...++..
T Consensus 56 Dt~G~~~-~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 134 (201)
T cd04107 56 DIAGQER-FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMD 134 (201)
T ss_pred ECCCchh-hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHH
Confidence 3788732 22223456899999999999987644221 112111 145799999999999732 2222333
Q ss_pred HHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 RHFDSCK-QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+..+ ..++.+||+++.|++++++++.+.+..
T Consensus 135 ~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 135 QFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444445 478999999999999999998776543
No 227
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.05 E-value=1e-05 Score=70.61 Aligned_cols=20 Identities=50% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
|+|+|..++|||||||+|++
T Consensus 1 V~v~G~~ssGKSTliNaLlG 20 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLG 20 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999997
No 228
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.05 E-value=2.5e-06 Score=74.42 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
.+.|+||.|+||+.. .++..+ .++ ..++|+++|+||+|++.+....-..+.+ +..+.+++++|++++.|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 689999999999753 222222 222 4689999999999998664432112222 23478999999999999999987
Q ss_pred HH
Q 017187 121 LV 122 (375)
Q Consensus 121 ~L 122 (375)
.+
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 229
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.05 E-value=7e-06 Score=71.23 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeee--eEEEEEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQD--IAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~--~~~~~i~~~~~~~liDTPGi~~ 205 (375)
+|+++|.+|||||||+|.|.+.-. .........+..|.. ...+.+. +..+.++||||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~--------~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFS--------KYKGLPPSKITPTVGLNIGTIEVG-NARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcc--------cccCCcccccCCccccceEEEEEC-CEEEEEEECCCChh
Confidence 488999999999999999985100 000011111122322 2233333 34588999999753
No 230
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.05 E-value=1.1e-05 Score=69.13 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999996
No 231
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.04 E-value=2.7e-05 Score=67.20 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=65.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~ 98 (375)
..||+... .......++.+|++++|+|+..+.+-.. ..+..+ ....|+++|.||+|+.+.. ..+...++.+
T Consensus 56 D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 134 (163)
T cd01860 56 DTAGQERY-RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD 134 (163)
T ss_pred eCCchHHH-HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH
Confidence 48887532 2223356788999999999986532211 111222 1357899999999987422 2223334444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
..+..++.+|++++.|++++++++.+.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 135 ENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999987654
No 232
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.04 E-value=1e-05 Score=70.38 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhcc---CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQL---SAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~---~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
..||+...........+..+|++|+|+|+..+.+-.+ ..+.+.. .+.|+++|.||+|+..... .+...++
T Consensus 53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 132 (165)
T cd04146 53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL 132 (165)
T ss_pred ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH
Confidence 3688763222234567889999999999976533211 1112211 2689999999999864321 1222223
Q ss_pred HhhCCCcEEEEecCCc-cCHHHHHHHHHHHH
Q 017187 97 FDSCKQDYIAINAHSR-SSVQKLLELVELKL 126 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~-~gvk~Ll~~L~~~l 126 (375)
.+..+.+++.+|++++ .|++++++.+.+.+
T Consensus 133 ~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 133 ASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 3344567889999998 48999998887654
No 233
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.04 E-value=2.3e-05 Score=67.64 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=66.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..|||- +........++++|.+|+|+|+..+.+..+ ..+... ..+.|+++|.||+|+..... .+....+.+
T Consensus 55 D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 133 (161)
T cd04113 55 DTAGQE-RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ 133 (161)
T ss_pred ECcchH-HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH
Confidence 588883 333344566889999999999987543221 112211 24689999999999975322 223333444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
..+..++.+|++++.|++++++.+.+
T Consensus 134 ~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 134 ENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999999988764
No 234
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.04 E-value=5.3e-05 Score=62.94 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=69.0
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccCH
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSV 115 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gv 115 (375)
..+.-...++|++++|..+.+|.+...+.+.... .+|+|-|++|+||+....+....+++.+.|. +++.+|+.+..|+
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 4455667899999999999999888777776644 4669999999999966566555556665564 6788899999999
Q ss_pred HHHHHHHHH
Q 017187 116 QKLLELVEL 124 (375)
Q Consensus 116 k~Ll~~L~~ 124 (375)
++|+.+|..
T Consensus 135 ~~l~~~L~~ 143 (148)
T COG4917 135 EELVDYLAS 143 (148)
T ss_pred HHHHHHHHh
Confidence 999888754
No 235
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.03 E-value=6.9e-06 Score=80.98 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC----------------CcEEE
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR----------------PSIYV 197 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~----------------~~~~l 197 (375)
+++++||.||||||||+|+|.+ .+...+++.|.+|.++.. +.+... ..+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~-----------~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTN-----------LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhC-----------CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 5789999999999999999997 222277788888887752 322221 14789
Q ss_pred EEcCCCCCC
Q 017187 198 LDTPGVLVP 206 (375)
Q Consensus 198 iDTPGi~~~ 206 (375)
+|.||+..-
T Consensus 72 ~DiaGlv~g 80 (368)
T TIGR00092 72 VDIAGLVGG 80 (368)
T ss_pred Eeccccccc
Confidence 999999763
No 236
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.03 E-value=3.6e-05 Score=67.16 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=66.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--------cCCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--------LSAKRRVIALNKKDLANPN--ILNKWVRH 96 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--------~~~kp~IiVlNK~DL~~~~--~~~~~~~~ 96 (375)
..||+.. ........++++|++|+|+|+..+.+- ..+.++ ..+.|+++|.||+|+.+.. ..+...++
T Consensus 58 D~~g~~~-~~~~~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 134 (167)
T cd01867 58 DTAGQER-FRTITTAYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL 134 (167)
T ss_pred eCCchHH-HHHHHHHHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence 4688753 223344678999999999998765331 122222 2357999999999997432 22233333
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.+..+.+++.+||+++.|++++++.+.+.+
T Consensus 135 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 135 ADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 334456789999999999999999887765
No 237
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.03 E-value=1.2e-05 Score=70.05 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~ 23 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999996
No 238
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.03 E-value=2.2e-05 Score=70.74 Aligned_cols=99 Identities=8% Similarity=-0.009 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--h---HhhccCCCCEEEEEEcCCCCChh--hHHHHHHHHhhC
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--G---LQPQLSAKRRVIALNKKDLANPN--ILNKWVRHFDSC 100 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~---l~~~~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~ 100 (375)
.+|+- +...-....+..+|++|+|+|...+.+-.+- . +.+...+.|+|+|.||+||.... ..++..++.+..
T Consensus 62 t~G~~-~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~ 140 (189)
T cd04121 62 TSGQG-RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN 140 (189)
T ss_pred CCCcH-HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc
Confidence 46653 2222233557899999999999876543221 1 22223568999999999996421 122333333445
Q ss_pred CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 101 KQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+..++.+||+++.|++++++++.+.+.
T Consensus 141 ~~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 141 GMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999876554
No 239
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.03 E-value=7.7e-06 Score=70.38 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=35.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
+++++|.+|||||||+|++.+. ......+..|.+.. .+.+. ...+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~-----------~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG-----------EVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-----------CCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChh
Confidence 4789999999999999999972 11222233333332 22222 23589999999654
No 240
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.02 E-value=6.9e-06 Score=71.70 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.||||||||+|+|.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~ 23 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG 23 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 699999999999999999986
No 241
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.02 E-value=3.3e-05 Score=67.46 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+-. -.......++++|++++|+|+..+.+-.+ ..+.+. ..+.|+++|.||+|+.++.. .+...++..
T Consensus 59 Dt~G~~~-~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T cd01866 59 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAK 137 (168)
T ss_pred ECCCcHH-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 4688632 22224567789999999999986433211 112111 24689999999999974322 222333444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+.+..++.+|++++.|+++++..+.+.+
T Consensus 138 ~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5567889999999999999998887655
No 242
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.02 E-value=3e-05 Score=66.45 Aligned_cols=98 Identities=16% Similarity=0.011 Sum_probs=63.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+-. -.......+.++|.+++|+|+..+.+-.. . .+... ..++|+++|+||+|+..... .+...++.+
T Consensus 55 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 133 (162)
T cd04123 55 DTAGQER-YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK 133 (162)
T ss_pred ECCchHH-HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence 3666522 11222345689999999999876532111 1 11122 23589999999999975332 223334444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
..+..++.+|++++.|++++++++.+.
T Consensus 134 ~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 134 SVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 456778999999999999999998654
No 243
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.02 E-value=2.6e-05 Score=67.91 Aligned_cols=99 Identities=13% Similarity=0.021 Sum_probs=64.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+... .......++++|.+|+|+|...+.+-.+ ..+... ..+.|+++|.||+|+..... .+...++.+
T Consensus 57 Dt~G~~~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~ 135 (166)
T cd04122 57 DTAGQERF-RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD 135 (166)
T ss_pred ECCCcHHH-HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHH
Confidence 47887542 2233567899999999999987643211 111111 23578999999999975422 122223333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+.+..++.+||+++.|+++++..+...+
T Consensus 136 ~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999887776543
No 244
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.02 E-value=1.7e-05 Score=78.67 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhh---ccccc-ccccccccccCCCCC---eeeeeEE-----EEEccC----CcEE
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIA---LSRFP-VQEKTKRATVGPLPG---VTQDIAG-----FKIAHR----PSIY 196 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g---~~~~~-~~~k~~~~~v~~~pg---~T~~~~~-----~~i~~~----~~~~ 196 (375)
...+.++|+|..|+|||||||++.+.- .++.. .+.+.+---+++.+| +|.++.. +.+... .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 567899999999999999999999831 11100 011112225788899 8877642 333322 4699
Q ss_pred EEEcCCCCCCC
Q 017187 197 VLDTPGVLVPS 207 (375)
Q Consensus 197 liDTPGi~~~~ 207 (375)
++||+|+...+
T Consensus 95 lIDcvG~~v~G 105 (492)
T TIGR02836 95 LVDCVGYTVKG 105 (492)
T ss_pred EEECCCcccCC
Confidence 99999997754
No 245
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.02 E-value=1.3e-05 Score=69.07 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|.+.+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 246
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.02 E-value=1.1e-05 Score=72.13 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|++..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999986
No 247
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3.2e-05 Score=73.02 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=78.2
Q ss_pred HhcccccceEEeeCCCcccc----cchhHHHHHHHHHHHhhhcCeEEEEEeCCCC---CCCCchhHhhccCCCCE-EEEE
Q 017187 8 KKGLGLGEMGFTKGGGNINW----FPGHMAAATRAIKHRLKISDLVIEVRDSRIP---LSSAHPGLQPQLSAKRR-VIAL 79 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~~w----fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p---~s~~~~~l~~~~~~kp~-IiVl 79 (375)
.|||+++.++..+...+++| .||| +..++.|.--..+.|-.|+|+.|.+. .+.+...+.+ .-+.|. ++++
T Consensus 58 ~rGITIntahveyet~~rhyahVDcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlar-qvGvp~ivvfl 135 (394)
T COG0050 58 ARGITINTAHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLAR-QVGVPYIVVFL 135 (394)
T ss_pred hcCceeccceeEEecCCceEEeccCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhh-hcCCcEEEEEE
Confidence 68999999999999999877 9999 67888888999999999999998763 2223223333 335655 5557
Q ss_pred EcCCCCChhhHHH-----HHHHHhhCCC-----cEEEEecCCc--------cCHHHHHHHHHHHHhh
Q 017187 80 NKKDLANPNILNK-----WVRHFDSCKQ-----DYIAINAHSR--------SSVQKLLELVELKLKE 128 (375)
Q Consensus 80 NK~DL~~~~~~~~-----~~~~~~~~g~-----~vi~iSa~~~--------~gvk~Ll~~L~~~l~~ 128 (375)
||+|+++...+.+ ..+.+...++ +++.-|+... ..+.+|++.+..+++.
T Consensus 136 nK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 136 NKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred ecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 9999997433222 2223322222 4555555321 1245666666666554
No 248
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.02 E-value=1.3e-05 Score=70.59 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...+++++|.+|||||||+|.|.. ++.....+..|.+. ..+... .-.+.++||||..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~D~~G~~ 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL-----------GEVVHTSPTIGSNV--EEIVYK-NIRFLMWDIGGQE 70 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CeEEEEEECCCCH
Confidence 457899999999999999999985 11122333334332 223332 2358899999974
No 249
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.02 E-value=6.6e-06 Score=73.00 Aligned_cols=85 Identities=21% Similarity=0.148 Sum_probs=59.4
Q ss_pred HHhhhcCeEEEEEeCCCCCC--CCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh------hCCCcEEEE
Q 017187 41 HRLKISDLVIEVRDSRIPLS--SAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD------SCKQDYIAI 107 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s--~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~------~~g~~vi~i 107 (375)
..++++|.||+|+|+.++.. .....+.++ ..++|+++++||+|+.+.....+....+. .....++.+
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 45789999999999976421 111122222 35689999999999876544444444442 233467889
Q ss_pred ecCCccCHHHHHHHHHHH
Q 017187 108 NAHSRSSVQKLLELVELK 125 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~ 125 (375)
|+.++.|+.+.++||.+.
T Consensus 157 sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp BTTTTBTHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHhc
Confidence 999999999999999765
No 250
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.01 E-value=2.7e-05 Score=68.99 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=51.1
Q ss_pred hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHHhhCC--CcEEEEecCCccCH
Q 017187 45 ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHFDSCK--QDYIAINAHSRSSV 115 (375)
Q Consensus 45 ~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g--~~vi~iSa~~~~gv 115 (375)
.+|.+++|+|++.+++..+..+.+. ..++|+++|+||+|+.+... .+++.+.+...+ .+++++||+++.|+
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 5689999999988777655444343 35689999999999986543 233444554332 37999999999986
No 251
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.01 E-value=2.9e-05 Score=71.05 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=65.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhcc----CCCCEEEEEEcCCCCChh-hH-HHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQL----SAKRRVIALNKKDLANPN-IL-NKWV 94 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~----~~kp~IiVlNK~DL~~~~-~~-~~~~ 94 (375)
-..||+- ....-....+..+|++|+|+|+..+.+-.+ ..+.+.. ...|+++|.||+||.... .. +...
T Consensus 55 ~Dt~G~~-~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~ 133 (215)
T cd04109 55 WDIGGQS-IGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA 133 (215)
T ss_pred EECCCcH-HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence 3467763 333334456889999999999987643221 1111211 124688999999997432 11 1222
Q ss_pred HHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 RHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+..+...+.+||+++.|++++++++.+.+..
T Consensus 134 ~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 134 RFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2223345678899999999999999998776643
No 252
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.01 E-value=2.5e-05 Score=67.83 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc-cCCCCEEEEEEcCCCCChhh-HHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ-LSAKRRVIALNKKDLANPNI-LNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~-~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~- 98 (375)
.+|||.. ........+..+|++++|+|++.+.+... ..+ ... ..+.|.++|.||+|+.++.. .....+.+.
T Consensus 62 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~ 140 (169)
T cd04114 62 DTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD 140 (169)
T ss_pred ECCCcHH-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 5788743 33334678899999999999876533211 111 111 23578899999999975432 223333332
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.....++.+|++++.|++++++.+.+.
T Consensus 141 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 141 AQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 233568899999999999999988654
No 253
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.01 E-value=1.9e-05 Score=68.89 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH----hhccCCCCEEEEEEcCCCCChhhH---HHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL----QPQLSAKRRVIALNKKDLANPNIL---NKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l----~~~~~~kp~IiVlNK~DL~~~~~~---~~~~~~~ 97 (375)
..||+-. ....+...+..+|++++|+|+..+.+-.. ..+ .....+.|+++|.||+|+.+.... +.....+
T Consensus 53 Dt~G~~~-~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 131 (166)
T cd01893 53 DTSSRPQ-DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI 131 (166)
T ss_pred eCCCchh-hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH
Confidence 4577642 23344566799999999999987654332 111 111346899999999999764321 2222111
Q ss_pred -hhC-C-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 -DSC-K-QDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 -~~~-g-~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.+. . ..++.+||+++.|++++.+.+.+.+
T Consensus 132 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 132 MNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 111 1 3688999999999999999887654
No 254
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.01 E-value=1e-05 Score=68.76 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
|+++|.+|||||||+|+|.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 78999999999999999997
No 255
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.00 E-value=1.1e-05 Score=72.52 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEcCCCCChHHHHHHHHhh-hccccccccccccc---ccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTKRA---TVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~~~---~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
+|+++|.+|||||||+|+|... +.......-..... ......|+|.......+. ....+.++||||...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 7999999999999999999862 11110000000000 001224566554432232 223588999999854
No 256
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.00 E-value=3.3e-05 Score=66.90 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=63.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-CCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-SAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+-. -.......++.+|.+|+|+|+..+.+..+ ..+..+ . .+.|+++|.||+|+..... .+...++..
T Consensus 58 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01868 58 DTAGQER-YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE 136 (165)
T ss_pred eCCChHH-HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH
Confidence 4677632 22223456789999999999986543221 111211 1 2579999999999975321 223333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
..+..++.+||+++.|++++++.+...
T Consensus 137 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 137 KNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 446678999999999999999988654
No 257
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.00 E-value=6.3e-05 Score=76.51 Aligned_cols=89 Identities=25% Similarity=0.263 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
++++....++++|++++|+|+..+.+..+..+... ..++|+++|+||+|+.+.+ .+.+ .+..+.+++.+|+++ .
T Consensus 272 gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~-~~~~---~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 272 GIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINS-LEFF---VSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcc-hhhh---hhhcCCceEEEEEec-C
Confidence 44556678899999999999988765443333333 2478999999999997542 2222 123345678899997 5
Q ss_pred CHHHHHHHHHHHHhh
Q 017187 114 SVQKLLELVELKLKE 128 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~ 128 (375)
|++++++.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888877766543
No 258
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.00 E-value=9e-06 Score=70.01 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
+|+++|.+|||||||+|.|.+.. .......+..|.+.. .+. ...-.+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~---------~~~~~~~~t~g~~~~--~~~-~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPEN---------AQSQIIVPTVGFNVE--SFE-KGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccC---------CCcceecCccccceE--EEE-ECCEEEEEEECCCCH
Confidence 48899999999999999998610 012233344454332 121 122247899999975
No 259
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.99 E-value=7.5e-06 Score=72.00 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=55.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCC-cEEEEecCCcc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQ-DYIAINAHSRS 113 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~-~vi~iSa~~~~ 113 (375)
..++++|++|+|+|+..+.+-.+ ..+... ..+.|+++|+||+||.+.... ....++.+..+. .++.+||+++.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 45789999999999977633221 111112 236899999999999643211 111122222333 35889999999
Q ss_pred CHHHHHHHHHHHH
Q 017187 114 SVQKLLELVELKL 126 (375)
Q Consensus 114 gvk~Ll~~L~~~l 126 (375)
|++++++.+.+.+
T Consensus 153 ~v~~lf~~l~~~~ 165 (169)
T cd01892 153 SSNELFTKLATAA 165 (169)
T ss_pred cHHHHHHHHHHHh
Confidence 9999998887654
No 260
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.99 E-value=3.5e-05 Score=65.83 Aligned_cols=99 Identities=14% Similarity=0.008 Sum_probs=65.8
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhcc--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQL--SAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~~--~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-.+|||... .......++.+|++++|+|...+.+..+ . .+.+.. ...|+++|+||+|+.+... .+...++
T Consensus 52 ~D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 130 (160)
T cd00876 52 LDTAGQEEF-SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKAL 130 (160)
T ss_pred EECCChHHH-HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHH
Confidence 348888642 2234467889999999999876432211 1 111111 3689999999999986321 2233333
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
....+.+++.+|++++.|++++++++.+.
T Consensus 131 ~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 131 AKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 33445688999999999999999988653
No 261
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.99 E-value=1.6e-05 Score=69.38 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|||||||+|.+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999999985
No 262
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.99 E-value=1.2e-05 Score=69.55 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.||||||||+|++.+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 263
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.99 E-value=1.2e-05 Score=72.97 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
++|+|+|.||||||||+|.+.+ ..... ...|.++.+.. .+.+.+. -.+.++||||...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~-----------~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA-----------QEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc-----------CCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 3799999999999999999986 11111 12333333322 2222221 1367999999854
No 264
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.99 E-value=1.2e-05 Score=69.94 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|++.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 265
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.99 E-value=9.4e-06 Score=77.94 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-------------cC-----CcE
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-------------HR-----PSI 195 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-------------~~-----~~~ 195 (375)
..+.+.+||.|||||||++|+|.. ..+..++.|-+|.++...++. .. -.+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~------------~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l 86 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTK------------SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFL 86 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhc------------CCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeE
Confidence 456899999999999999999996 335588999999988643321 11 137
Q ss_pred EEEEcCCCCCC
Q 017187 196 YVLDTPGVLVP 206 (375)
Q Consensus 196 ~liDTPGi~~~ 206 (375)
.++|..|+..-
T Consensus 87 ~v~DIAGLvkG 97 (391)
T KOG1491|consen 87 TVYDIAGLVKG 97 (391)
T ss_pred EEEeecccccC
Confidence 89999999753
No 266
>PRK04213 GTP-binding protein; Provisional
Probab=97.98 E-value=4.5e-05 Score=68.68 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=56.1
Q ss_pred HhhhcCeEEEEEeCCCCCCCC-----------chhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhC------
Q 017187 42 RLKISDLVIEVRDSRIPLSSA-----------HPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDSC------ 100 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~-----------~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~------ 100 (375)
.+..+|+|++|+|+....... +..+... ..++|+++|+||+|+.+.. ..+++.+.+.-.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 345678999999986432110 0112222 3478999999999997644 233344433210
Q ss_pred CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 101 KQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 101 g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+++++||+++ |+++++++|.+.+.+
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 125789999999 999999999877654
No 267
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.98 E-value=2.9e-05 Score=66.90 Aligned_cols=98 Identities=17% Similarity=0.074 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChh-hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPN-ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~-~~~~~~~~~~ 98 (375)
..||+.. ........++.+|++++|+|+..+.+-.. ..+.++ ..+.|+++|.||+|+.... ..+...++..
T Consensus 55 D~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~ 133 (161)
T cd01863 55 DTAGQER-FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR 133 (161)
T ss_pred ECCCchh-hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH
Confidence 4677532 22333456789999999999876543211 011122 2467899999999997332 2223333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+.+.+++.+|++++.|++++++.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 134 KHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 456779999999999999999887653
No 268
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.98 E-value=1.9e-05 Score=67.73 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|++.+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999996
No 269
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=7.7e-05 Score=63.88 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=57.8
Q ss_pred hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHH----HHHh--hCCCcEEEEecCCccC
Q 017187 43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWV----RHFD--SCKQDYIAINAHSRSS 114 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~----~~~~--~~g~~vi~iSa~~~~g 114 (375)
-++++.+++|+|+..+.+.....+.++ ..+.|+++|+||+|+..+....... ..++ ....+++++|++++.+
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 356789999999987655444444444 3457999999999997654433222 2221 1234788999999999
Q ss_pred HHHHHHHHHHH
Q 017187 115 VQKLLELVELK 125 (375)
Q Consensus 115 vk~Ll~~L~~~ 125 (375)
++++++++.+.
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 270
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.98 E-value=1.5e-05 Score=69.21 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999986
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.98 E-value=7.4e-05 Score=79.49 Aligned_cols=92 Identities=23% Similarity=0.264 Sum_probs=60.8
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCC--hhhHHHH----HH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLAN--PNILNKW----VR 95 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~--~~~~~~~----~~ 95 (375)
+-.-|||. +-.+.+...+..+|++++|+|+..+..........+ ...+++|+|+||+|+++ ++..++. .+
T Consensus 108 liDtPG~~-~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~ 186 (632)
T PRK05506 108 VADTPGHE-QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRA 186 (632)
T ss_pred EEECCChH-HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHH
Confidence 34569995 445667778999999999999987765443322222 33467888999999984 2222222 22
Q ss_pred HHhhCC---CcEEEEecCCccCHHH
Q 017187 96 HFDSCK---QDYIAINAHSRSSVQK 117 (375)
Q Consensus 96 ~~~~~g---~~vi~iSa~~~~gvk~ 117 (375)
++...+ .+++++||+++.|+.+
T Consensus 187 ~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 187 FAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHcCCCCccEEEEecccCCCccc
Confidence 222333 3589999999998763
No 272
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.98 E-value=3e-05 Score=69.05 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....+++++|.+|||||||+|.|.+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999986
No 273
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.98 E-value=1.6e-05 Score=68.94 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|++..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999985
No 274
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.97 E-value=4.2e-05 Score=77.95 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=68.4
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCchhHhhc--cCCC
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAHPGLQPQ--LSAK 73 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~~~l~~~--~~~k 73 (375)
..||+.+......+.... +-.-|||. +-.+.+...+..+|++++|+|+..+.. ..-.....+ ..++
T Consensus 67 r~rGiTid~~~~~~~~~~~~i~lIDtPGh~-~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi 145 (446)
T PTZ00141 67 RERGITIDIALWKFETPKYYFTIIDAPGHR-DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGV 145 (446)
T ss_pred HhcCEeEEeeeEEEccCCeEEEEEECCChH-HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCC
Confidence 456666555555555443 34579995 557788888999999999999987542 111111111 3456
Q ss_pred C-EEEEEEcCCC--CC--hhhH----HHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187 74 R-RVIALNKKDL--AN--PNIL----NKWVRHFDSCK-----QDYIAINAHSRSSVQ 116 (375)
Q Consensus 74 p-~IiVlNK~DL--~~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~~~gvk 116 (375)
| +|+++||+|. ++ ++.. ++..+++...+ .+++++|+.++.|+.
T Consensus 146 ~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 146 KQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMI 202 (446)
T ss_pred CeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcc
Confidence 6 5689999994 32 2222 23334443333 468999999998875
No 275
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.97 E-value=3.6e-05 Score=69.45 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=62.8
Q ss_pred ccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhh---HHHHHH
Q 017187 27 WFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNI---LNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~---~~~~~~ 95 (375)
..|||... +.+ ...+..+|++|+|+|+..+.+-... .+.+. ..++|+++|+||+|+.+... .+...+
T Consensus 53 D~~G~~~~--~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~ 130 (198)
T cd04147 53 DTSGSYSF--PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALS 130 (198)
T ss_pred ECCCchhh--hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHH
Confidence 46776432 222 2457899999999998765332211 11111 14689999999999975311 112222
Q ss_pred HHh-hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
... ..+..++.+|++++.|++++++++.+.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 131 TVELDWNCGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred HHHhhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 222 2345678999999999999999987765
No 276
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.96 E-value=2e-05 Score=68.39 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|+|.+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999997
No 277
>PTZ00369 Ras-like protein; Provisional
Probab=97.95 E-value=3.1e-05 Score=69.31 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=64.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+-. ...-....++.+|++|+|+|+..+.+-.+ . .+.+. ..+.|+++|.||+|+.+... .....++.
T Consensus 59 Dt~G~~~-~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~ 137 (189)
T PTZ00369 59 DTAGQEE-YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA 137 (189)
T ss_pred eCCCCcc-chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 3677643 22223456789999999999976543111 1 11121 23679999999999864321 11222222
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+.+++.+||+++.|++++++++.+.+..
T Consensus 138 ~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 138 KSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 3345678999999999999999988765543
No 278
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.95 E-value=1.8e-05 Score=69.53 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
..++|+++|.+|||||||++.|.. ...... .|.++.+...+.. ..-.+.++||||..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~-----------~~~~~~--~~t~g~~~~~~~~-~~~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL-----------GQSVTT--IPTVGFNVETVTY-KNVKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc-----------CCCccc--cCCcccceEEEEE-CCEEEEEEECCCCH
Confidence 457899999999999999999975 111111 2222222222222 22358899999974
No 279
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.95 E-value=1.9e-05 Score=70.82 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~ 22 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD 22 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 280
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.95 E-value=1.7e-05 Score=68.28 Aligned_cols=21 Identities=48% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.||||||||+|++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 281
>PRK10218 GTP-binding protein; Provisional
Probab=97.95 E-value=5.8e-05 Score=79.50 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh---hhHHHHHHHHhh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP---NILNKWVRHFDS 99 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~ 99 (375)
+-..|||.. ....+...++.+|.+|+|+|+..........+... ..++|.++|+||+|+... ..+++..+.|..
T Consensus 72 liDTPG~~d-f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~ 150 (607)
T PRK10218 72 IVDTPGHAD-FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVN 150 (607)
T ss_pred EEECCCcch-hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhc
Confidence 345799954 34556788999999999999986544333222222 457899999999998642 233445555422
Q ss_pred -------CCCcEEEEecCCcc----------CHHHHHHHHHHHHhhhh-ccCCceEEEEEc---CCCCChH
Q 017187 100 -------CKQDYIAINAHSRS----------SVQKLLELVELKLKEVI-SREPTLLVMVVG---VPNVGKS 149 (375)
Q Consensus 100 -------~g~~vi~iSa~~~~----------gvk~Ll~~L~~~l~~~~-~~~~~~~v~vvG---~pnvGKS 149 (375)
...+++++|+.++. ++..|++.+...++... ....+++..|.- .|.+|+-
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i 221 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVI 221 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEE
Confidence 23568999999987 58889988888887542 223344444432 2566663
No 282
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.95 E-value=3.1e-05 Score=70.45 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=65.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---HhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g 101 (375)
..+|+-.. ..-....+..+|++|+|+|...+.+..+ .+ +.+...+.|+++|.||+||.......+..++.+..+
T Consensus 50 Dt~G~e~~-~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~ 128 (200)
T smart00176 50 DTAGQEKF-GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKN 128 (200)
T ss_pred ECCCchhh-hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcC
Confidence 36777332 1222346789999999999986543221 11 222235689999999999864322222233333456
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..++.+||+++.|++++++++.+.+.
T Consensus 129 ~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 129 LQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999876653
No 283
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.94 E-value=1.9e-05 Score=68.06 Aligned_cols=22 Identities=45% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.||||||||+|.+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 284
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=4.4e-05 Score=77.48 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=66.5
Q ss_pred ccccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187 25 INWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g 101 (375)
+-.=|||. |+..|+.+ .+-+|++|+|+|+.+....+-.+ +... ..+.|+++.+||+|..+.... .....+.+.|
T Consensus 59 FiDTPGHe--AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~g 135 (509)
T COG0532 59 FIDTPGHE--AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYG 135 (509)
T ss_pred EEcCCcHH--HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcC
Confidence 34569996 44455554 57889999999998866544322 2222 468999999999999754321 2222222222
Q ss_pred ---------CcEEEEecCCccCHHHHHHHHHHH
Q 017187 102 ---------QDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 102 ---------~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
..++++||+++.|+++|+..+.-.
T Consensus 136 l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 136 LVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 257899999999999999987543
No 285
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.94 E-value=2.2e-05 Score=68.30 Aligned_cols=22 Identities=27% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~ 24 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999986
No 286
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.94 E-value=2.5e-05 Score=68.42 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||++.+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 287
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.93 E-value=2.7e-05 Score=68.24 Aligned_cols=97 Identities=15% Similarity=-0.005 Sum_probs=62.8
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..|||.. ........++++|++|+|+|+..+.+-.+ ..+..+ ..++|+++|+||+|+.......+..+.+.
T Consensus 48 ~D~~G~~~-~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~ 126 (167)
T cd04161 48 FDLGGGAN-FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS 126 (167)
T ss_pred EECCCcHH-HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC
Confidence 44788743 22233567899999999999987532211 122222 24689999999999976543333443331
Q ss_pred ------hCC--CcEEEEecCCc------cCHHHHHHHHH
Q 017187 99 ------SCK--QDYIAINAHSR------SSVQKLLELVE 123 (375)
Q Consensus 99 ------~~g--~~vi~iSa~~~------~gvk~Ll~~L~ 123 (375)
+.+ ..++.+||+++ .|+.+-++||.
T Consensus 127 l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 127 LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred cccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 112 35667899998 78999999885
No 288
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.93 E-value=2e-05 Score=70.27 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|.+.+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 289
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.93 E-value=5.1e-05 Score=67.95 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCChhhH--HHHHHH
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLANPNIL--NKWVRH 96 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~~~~~--~~~~~~ 96 (375)
.||+.. ...-....++.+|++|+|+|...+.+-.. ..+..+ . .+.|+++|.||+|+.+...+ ....++
T Consensus 54 t~G~~~-~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~ 132 (190)
T cd04144 54 TAGQEE-YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL 132 (190)
T ss_pred CCCchh-hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence 577633 22223356889999999999876533211 111111 1 35799999999999643221 122222
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+..+..++.+||+++.|++++++++.+.+..
T Consensus 133 ~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 133 ARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred HHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 23345678999999999999999998776543
No 290
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.93 E-value=2.2e-05 Score=71.18 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
.++++++|.+|+|||||+++|+..... .|+.. ........|+|.+.....+. .+..+.++||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~----~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAK----KGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh----cccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 468999999999999999999862100 01000 01111256888877643332 23468899999984
No 291
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.93 E-value=5.1e-05 Score=66.81 Aligned_cols=101 Identities=18% Similarity=0.084 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc----c-CCCCEEEEEEcCCCCChhhH---H-HHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ----L-SAKRRVIALNKKDLANPNIL---N-KWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~----~-~~kp~IiVlNK~DL~~~~~~---~-~~~~ 95 (375)
..||...- .......++.+|++++|+|+..+.+.. ...+..+ . ...|+++|.||+||.+.... + ...+
T Consensus 55 Dt~G~~~~-~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~ 133 (170)
T cd04108 55 DTAGQERF-KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIK 133 (170)
T ss_pred eCCChHHH-HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHH
Confidence 46776432 222345588999999999997642221 1122222 1 12458999999999754321 1 1112
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.++.+.+++.+||+++.|++++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 134 LAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 223345678899999999999999998877654
No 292
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.93 E-value=2.2e-05 Score=68.59 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.||||||||+|++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 293
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=5.6e-05 Score=72.26 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=74.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC--CchhHhh--ccCCCCEEEEEEcCCCCChhhHH----HHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS--AHPGLQP--QLSAKRRVIALNKKDLANPNILN----KWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~--~~~~l~~--~~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~ 98 (375)
.-||| .--+.-|..-.+-.|-.++|++|..|... -.+.|.. ...-+.+|+|-||+||++++... ++.+|.+
T Consensus 92 DaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk 170 (415)
T COG5257 92 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK 170 (415)
T ss_pred eCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhc
Confidence 47999 34556666677788999999999875332 1122322 25668899999999999876532 3334443
Q ss_pred ---hCCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187 99 ---SCKQDYIAINAHSRSSVQKLLELVELKLKEV 129 (375)
Q Consensus 99 ---~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~ 129 (375)
..+.+++++||..+.+++.|++++.+.++..
T Consensus 171 Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 171 GTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 2245899999999999999999999998764
No 294
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.92 E-value=2.9e-05 Score=67.09 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+++|..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999985
No 295
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.92 E-value=2e-05 Score=69.46 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+|+++|.||||||||+|.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999996
No 296
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.91 E-value=2.9e-05 Score=69.19 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||+|++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999985
No 297
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.91 E-value=2.9e-05 Score=67.50 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...+++++|.+|||||||++++..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999985
No 298
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.90 E-value=4.6e-05 Score=67.63 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=64.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh------hHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN------ILNKWV 94 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~------~~~~~~ 94 (375)
..||+-. ...-....++.+|++|+|+|...+.+-.+. .+... ..+.|+++|.||+||.+.. ......
T Consensus 55 Dt~G~~~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~ 133 (187)
T cd04132 55 DTAGQEE-YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE 133 (187)
T ss_pred ECCCchh-HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHH
Confidence 3577532 112222357899999999999765433221 11111 2468999999999996532 111222
Q ss_pred HHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 RHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++....+. +++.+||+++.|++++++.+...+..
T Consensus 134 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 134 SVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 22234455 78999999999999999988776544
No 299
>CHL00071 tufA elongation factor Tu
Probab=97.89 E-value=3e-05 Score=78.14 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc----ccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK----TKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k----~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
....++++++|.+|+|||||+|+|++. +.+... ... .........+|+|++.....+. ++.++.++||||..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA-KAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc-cccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 466789999999999999999999972 111100 000 0111222347899887643332 33468899999954
No 300
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.89 E-value=4.2e-05 Score=68.25 Aligned_cols=88 Identities=13% Similarity=-0.002 Sum_probs=57.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCCh----h--h-HHHHHHHHhhCCCcEEEEe
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANP----N--I-LNKWVRHFDSCKQDYIAIN 108 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~----~--~-~~~~~~~~~~~g~~vi~iS 108 (375)
..++++|++++|+|...+.+-.+ ..+... ....+.|+|.||+||... . . .+...++.+..+..++.+|
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S 147 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS 147 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence 46789999999999977644322 122222 122344789999999621 1 1 1112222234456789999
Q ss_pred cCCccCHHHHHHHHHHHHhh
Q 017187 109 AHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~~l~~ 128 (375)
|+++.|++++++++.+.+.+
T Consensus 148 Ak~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998776644
No 301
>PLN03126 Elongation factor Tu; Provisional
Probab=97.89 E-value=0.00016 Score=74.18 Aligned_cols=106 Identities=16% Similarity=0.027 Sum_probs=66.8
Q ss_pred HHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEE
Q 017187 6 IIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIA 78 (375)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiV 78 (375)
-..||+++......+...+ +-.-|||. +.++.+...+..+|++++|+|+.............. ..++| +|++
T Consensus 125 Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~-~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvv 203 (478)
T PLN03126 125 ERARGITINTATVEYETENRHYAHVDCPGHA-DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF 203 (478)
T ss_pred HHhCCeeEEEEEEEEecCCcEEEEEECCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEE
Confidence 4456665544443333322 44689995 566778888999999999999987654433222222 34677 6678
Q ss_pred EEcCCCCChhhH-H----HHHHHHhhC-----CCcEEEEecCCc
Q 017187 79 LNKKDLANPNIL-N----KWVRHFDSC-----KQDYIAINAHSR 112 (375)
Q Consensus 79 lNK~DL~~~~~~-~----~~~~~~~~~-----g~~vi~iSa~~~ 112 (375)
+||+|+++.+.. + +..+++... ..+++++|+.++
T Consensus 204 vNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g 247 (478)
T PLN03126 204 LNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLA 247 (478)
T ss_pred EecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccc
Confidence 999999874322 1 233344332 346788898765
No 302
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.89 E-value=4.1e-05 Score=66.30 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=63.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~ 97 (375)
..||+... .......++.+|.+++|+|...+.+..+ ..+..+ ..+.|+++|.||+||.+.... ....++.
T Consensus 55 Dt~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 133 (164)
T cd04175 55 DTAGTEQF-TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA 133 (164)
T ss_pred ECCCcccc-hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH
Confidence 36776432 1222346789999999999865433211 111111 246899999999999753211 1111222
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+..+.+++.+||+++.|+++++.++.+.+
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 134 RQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 33456889999999999999999987654
No 303
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.89 E-value=4.8e-05 Score=67.96 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=64.2
Q ss_pred cchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh------HHHHHH
Q 017187 28 FPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI------LNKWVR 95 (375)
Q Consensus 28 fpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~------~~~~~~ 95 (375)
.||... .+.+ ...+.++|++++|+|...+.+-.+ ..+..+ ..+.|+++|.||+|+.+... ..+..+
T Consensus 57 ~~G~~~--~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (193)
T cd04118 57 TAGSER--YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD 134 (193)
T ss_pred CCCchh--hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH
Confidence 677632 2222 235679999999999976533211 112222 23689999999999974321 112223
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+....+.+++.+|++++.|++++++.+.+.+..
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 135 FADEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 333445678899999999999999998876643
No 304
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.89 E-value=2.4e-05 Score=82.13 Aligned_cols=61 Identities=31% Similarity=0.528 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc--cCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA--HRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~--~~~~~~liDTPGi~~ 205 (375)
.+...|+++|.+|+|||||+|+|++. ....+..+|+|++...+.+. ....+.++||||-..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~------------~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~ 147 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT------------KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA 147 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC------------CcccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence 35578999999999999999999961 12234457888887654332 233699999999754
No 305
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.88 E-value=5e-05 Score=66.29 Aligned_cols=96 Identities=19% Similarity=0.103 Sum_probs=61.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 99 (375)
..||+.. ........++.+|.+++|+|+..+.+-. ...+... ..++|+++++||+|+......+...+.+.-
T Consensus 64 D~~G~~~-~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~ 142 (173)
T cd04155 64 DIGGQRA-IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNL 142 (173)
T ss_pred ECCCCHH-HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCC
Confidence 3667632 2223345678999999999997542111 1111111 246899999999999765444444444421
Q ss_pred -----CCCcEEEEecCCccCHHHHHHHHH
Q 017187 100 -----CKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 100 -----~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
....++.+||+++.|++++++++.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 143 HDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred cccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 112467899999999999999874
No 306
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.88 E-value=2.9e-05 Score=68.35 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|||||||+|.+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999986
No 307
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=2.9e-05 Score=75.86 Aligned_cols=70 Identities=29% Similarity=0.338 Sum_probs=42.2
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC---CcEEEEEcCCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR---PSIYVLDTPGVLVP 206 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~---~~~~liDTPGi~~~ 206 (375)
++-.+++|++|.+|.|||||||+|+....... .........|-.|..+.. ..+..+ -++.++||||+.+.
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-----~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGN-----REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCC-----cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 46679999999999999999999997421110 011112222222333332 222221 14789999999764
No 308
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.88 E-value=1.6e-05 Score=69.87 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|+|.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~ 22 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLE 22 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHH
Confidence 589999999999999999986
No 309
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.88 E-value=1.5e-05 Score=67.53 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.||||||||+|+|.+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~ 22 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG 22 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999986
No 310
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.88 E-value=0.00013 Score=64.59 Aligned_cols=97 Identities=20% Similarity=0.126 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC--CC
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSC--KQ 102 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~--g~ 102 (375)
+|||- +..-.+.-..+.++-+|+++|++.|.......+.++ ....|+++.+||.||.+....++..+++... ..
T Consensus 75 tPGq~-RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQE-RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCcH-HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 89994 333333345678999999999998877644455554 2337999999999998766566666666533 67
Q ss_pred cEEEEecCCccCHHHHHHHHHHH
Q 017187 103 DYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 103 ~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+++..++..+++..+.+..+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 89999999999888877766544
No 311
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.87 E-value=4.4e-05 Score=65.71 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=56.7
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..++.+|.+++|+|...+.+-.+. .+.+. ..+.|+++|.||+|+.+.... +...++.+..+.+++.+||++
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKS 147 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence 457899999999998765332111 11111 236899999999999753221 112222223356789999999
Q ss_pred ccCHHHHHHHHHHH
Q 017187 112 RSSVQKLLELVELK 125 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~ 125 (375)
+.|++++++++.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd04136 148 KINVDEVFADLVRQ 161 (163)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988654
No 312
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.87 E-value=3.3e-05 Score=69.78 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||++.+.+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999986
No 313
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.87 E-value=4.8e-05 Score=67.83 Aligned_cols=25 Identities=16% Similarity=0.488 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||++.+..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Confidence 4568999999999999999999974
No 314
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.87 E-value=2.5e-05 Score=72.18 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=44.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~ 207 (375)
...-+|+++|+|.||||||+..|..+ +.....+..||-... +..-..+.+++++|.|||.+-.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T------------~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITST------------HSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcc------------hhhhhceeeeEEEeecceEEecCceEEEecCccccccc
Confidence 45678999999999999999999973 233333444554443 2222344579999999998743
No 315
>PLN03118 Rab family protein; Provisional
Probab=97.87 E-value=7.5e-05 Score=68.03 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=66.4
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hH----hhc--cCCCCEEEEEEcCCCCChhhH--HHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GL----QPQ--LSAKRRVIALNKKDLANPNIL--NKWVR 95 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l----~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~ 95 (375)
-..||+-. ........++.+|++|+|+|+..+.+..+. .+ ..+ ..+.|+++|.||+|+...... +...+
T Consensus 67 ~Dt~G~~~-~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~ 145 (211)
T PLN03118 67 WDTAGQER-FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA 145 (211)
T ss_pred EECCCchh-hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 35777632 222234668899999999999765332211 01 111 134689999999999753222 22233
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+.+..++.+|++++.|++++++.+...+.+
T Consensus 146 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 146 LAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 333456678899999999999999999877654
No 316
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.87 E-value=6.4e-05 Score=62.26 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=66.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhH------hh-ccCCCCEEEEEEcCCCCChhhHHHH---HH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL------QP-QLSAKRRVIALNKKDLANPNILNKW---VR 95 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l------~~-~~~~kp~IiVlNK~DL~~~~~~~~~---~~ 95 (375)
-.+||+... .......+..+|.+++|+|+..+.+..+... .. ...++|+++|+||+|+.+....... ..
T Consensus 50 ~D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~ 128 (157)
T cd00882 50 WDTAGQERF-RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ 128 (157)
T ss_pred EecCChHHH-HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH
Confidence 347887543 3334667899999999999987654332211 11 1457899999999999866543332 12
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHH
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.......+++.+|+.++.+++++++++.
T Consensus 129 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 129 LAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 2223456889999999999999988864
No 317
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.86 E-value=9.2e-05 Score=79.34 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-hHhhc-cCCCCEEEEEEcCCCCChh--hHHHHHHHH----
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-GLQPQ-LSAKRRVIALNKKDLANPN--ILNKWVRHF---- 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~l~~~-~~~kp~IiVlNK~DL~~~~--~~~~~~~~~---- 97 (375)
-..|||-.. .......+..+|++|+|+|+......... .+... ..+.|+|+|+||+|+.+.. .....+..+
T Consensus 300 iDTPGhe~F-~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~ 378 (742)
T CHL00189 300 LDTPGHEAF-SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIP 378 (742)
T ss_pred EECCcHHHH-HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccch
Confidence 457999432 23334578999999999999875433221 22222 3578999999999997532 222222211
Q ss_pred hhCC--CcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 DSCK--QDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 ~~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
...+ .+++++||+++.|+++|++++....
T Consensus 379 e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 379 EKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 1112 4789999999999999999887654
No 318
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.86 E-value=2.2e-05 Score=67.12 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|||||||+|+|.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 319
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.86 E-value=3.5e-05 Score=67.48 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999985
No 320
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.86 E-value=0.00018 Score=64.73 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=62.7
Q ss_pred hcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCc--EEEEecCCccCH
Q 017187 45 ISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQD--YIAINAHSRSSV 115 (375)
Q Consensus 45 ~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~--vi~iSa~~~~gv 115 (375)
+...++.++|+|.++...+.++.++ ..+.|+++|+||+|.++.....+.+.... ..... ++.+|+.++.|+
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCH
Confidence 4667999999999998877777776 46899999999999998755443332222 11222 788899999999
Q ss_pred HHHHHHHHHHHh
Q 017187 116 QKLLELVELKLK 127 (375)
Q Consensus 116 k~Ll~~L~~~l~ 127 (375)
+++.+.|.+.+.
T Consensus 186 ~~l~~~i~~~~~ 197 (200)
T COG0218 186 DELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHHhh
Confidence 999998887664
No 321
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.85 E-value=9e-05 Score=65.33 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=61.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecC
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAH 110 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~ 110 (375)
...+..+|.+|+|+|..++.+-.+. .+.+. ..+.|+++|.||+|+.....+ +...++.++.+.+++.+||+
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 147 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAA 147 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecC
Confidence 3567899999999999876543321 12222 246899999999998643211 12222223446788999999
Q ss_pred CccCHHHHHHHHHHHHhh
Q 017187 111 SRSSVQKLLELVELKLKE 128 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~~ 128 (375)
++.|++++++++...+..
T Consensus 148 ~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 148 LRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999988765543
No 322
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.84 E-value=8e-05 Score=67.82 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHHhh
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHFDS 99 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 99 (375)
.+|+- +...-....++++|++|+|+|...+.+-.+. .+.+. ..+.|+++|.||+||.+...+ ....++.++
T Consensus 56 taGqe-~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~ 134 (202)
T cd04120 56 TAGQE-RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ 134 (202)
T ss_pred CCCch-hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 56652 2222234568899999999999876443221 11111 246899999999999643221 112222222
Q ss_pred -CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 100 -CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 100 -~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+..++.+||+++.|++++++++.+.+.
T Consensus 135 ~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 135 ITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2567889999999999999988876553
No 323
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.84 E-value=3.6e-05 Score=70.84 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=64.2
Q ss_pred cchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---ccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187 28 FPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQP---QLSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101 (375)
Q Consensus 28 fpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g 101 (375)
.||+.. .+.+ ...+..+|++|+|+|...+.+-.+ ..+.. ...+.|+++|.||+||.+.....+..++.+..+
T Consensus 69 t~G~~~--~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~ 146 (219)
T PLN03071 69 TAGQEK--FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (219)
T ss_pred CCCchh--hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcC
Confidence 566532 2223 345789999999999876533221 11111 235689999999999964332222223333456
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..++.+||+++.|++++++++.+.+.
T Consensus 147 ~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998876553
No 324
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.5e-05 Score=73.73 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=77.2
Q ss_pred HHHHhcccccceEEeeCCCcc----cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC---CchhHhhccCCCCEEE
Q 017187 5 RIIKKGLGLGEMGFTKGGGNI----NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS---AHPGLQPQLSAKRRVI 77 (375)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~----~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~---~~~~l~~~~~~kp~Ii 77 (375)
.-=..||++.-+-+-++..|+ -.-|||- ...|.|---.+.||+.|.++|||..... +...+..+++-+.+++
T Consensus 66 AEREQGITIDVAYRyFsT~KRkFIiADTPGHe-QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvv 144 (431)
T COG2895 66 AEREQGITIDVAYRYFSTEKRKFIIADTPGHE-QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVV 144 (431)
T ss_pred HHHhcCceEEEEeeecccccceEEEecCCcHH-HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEE
Confidence 334467888888888888875 4579994 4556677778999999999999975433 3344555566677888
Q ss_pred EEEcCCCCChh--hHHHHH----HHHhhCCC---cEEEEecCCccCH
Q 017187 78 ALNKKDLANPN--ILNKWV----RHFDSCKQ---DYIAINAHSRSSV 115 (375)
Q Consensus 78 VlNK~DL~~~~--~~~~~~----~~~~~~g~---~vi~iSa~~~~gv 115 (375)
.+||+||++-+ ..+.+. .+..+.+. .++++||..|.++
T Consensus 145 AVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 145 AVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred EEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 89999999643 222333 33334443 6889999887654
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.84 E-value=4.5e-05 Score=74.17 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=24.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
++-.+++|++|.+|.||||+||+|++.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 367899999999999999999999984
No 326
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.84 E-value=2.8e-05 Score=68.15 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|++.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~ 21 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ 21 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 327
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.84 E-value=3e-05 Score=67.94 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=35.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi 203 (375)
+++++|.+|||||||+|.+.+. ......+..|.++. .+... ...+.++||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-----------~~~~~~~t~g~~~~--~~~~~-~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-----------IPKKVAPTVGFTPT--KLRLD-KYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-----------CCccccCcccceEE--EEEEC-CEEEEEEECCCc
Confidence 3789999999999999999861 11223344454432 23232 235789999995
No 328
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.84 E-value=3.7e-05 Score=66.47 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.||||||||++.+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999986
No 329
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.83 E-value=4.9e-05 Score=69.52 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||+|.+.+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~ 24 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE 24 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999996
No 330
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.83 E-value=3e-05 Score=66.92 Aligned_cols=21 Identities=19% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|+|..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~ 21 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL 21 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999999975
No 331
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.82 E-value=0.00016 Score=65.59 Aligned_cols=87 Identities=18% Similarity=0.053 Sum_probs=57.4
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCch-h----Hhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHh-hCCCcEEEE
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHP-G----LQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFD-SCKQDYIAI 107 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~-~----l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~-~~g~~vi~i 107 (375)
...++.+|++|+|+|+..+.+-.+. . +.+. ..+.|+++|.||+|+...... +...++.. ..+.+++.+
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3457899999999999876433211 1 1111 145799999999999653211 11112222 235678999
Q ss_pred ecCCccCHHHHHHHHHHHH
Q 017187 108 NAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~l 126 (375)
||+++.|++++++.+...+
T Consensus 155 Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 155 SAKYNWHILLLFKELLISA 173 (198)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999988876554
No 332
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.82 E-value=4.4e-05 Score=68.98 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|.+.+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~ 22 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH 22 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999986
No 333
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.81 E-value=5.2e-05 Score=69.39 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+.+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~ 22 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK 22 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 334
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.81 E-value=7e-05 Score=65.15 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc-hh----Hhhcc----CCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEec
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH-PG----LQPQL----SAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINA 109 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~-~~----l~~~~----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa 109 (375)
..+..+|.+|+|+|...+.+..+ .. +.+.. .+.|+++|.||+|+.+.... +....+....+..++.+||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 45679999999999876543221 11 11111 46899999999999753221 1222222234557889999
Q ss_pred CCccCHHHHHHHHHHH
Q 017187 110 HSRSSVQKLLELVELK 125 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~ 125 (375)
+++.|++++++++.++
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999999988643
No 335
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.81 E-value=8.6e-05 Score=80.20 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=64.6
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHH---
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHF--- 97 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~--- 97 (375)
+-..|||-.. .......+..+|++|+|+|+.+............ ..+.|+|+++||+|+... +.....+..+
T Consensus 341 fiDTPGhe~F-~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~ 419 (787)
T PRK05306 341 FLDTPGHEAF-TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLV 419 (787)
T ss_pred EEECCCCccc-hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhccc
Confidence 3357999543 2233346788999999999987543332222222 357899999999999643 2222211111
Q ss_pred -hhC--CCcEEEEecCCccCHHHHHHHHHHH
Q 017187 98 -DSC--KQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 98 -~~~--g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
... ..+++++||+++.|+++|++++...
T Consensus 420 ~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 420 PEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 111 2578999999999999999988643
No 336
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.81 E-value=4.1e-05 Score=67.95 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|.+.+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~ 22 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ 22 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999986
No 337
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.81 E-value=3.7e-05 Score=73.22 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh-hhccccccccc--cccccc-----CCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQ-IALSRFPVQEK--TKRATV-----GPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k--~~~~~v-----~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~ 205 (375)
+|+++|.+|+|||||+|+|+. .|.+.. .++ ...+.+ ....|+|.+.....+ +.+..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHK--IGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcc--cccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 488999999999999999975 222110 000 001111 123477776553222 2234688999999764
No 338
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.81 E-value=3.9e-05 Score=66.92 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|||||||+|++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 339
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.80 E-value=7.6e-05 Score=78.41 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=64.1
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh--hhHHHHHHHHh--
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP--NILNKWVRHFD-- 98 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~--~~~~~~~~~~~-- 98 (375)
+-..|||.... ......+..+|++|+|+|+............+. ..+.|+++++||+|+... +....++..+.
T Consensus 139 ~iDTPGhe~F~-~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~ 217 (587)
T TIGR00487 139 FLDTPGHEAFT-SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLV 217 (587)
T ss_pred EEECCCCcchh-hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhh
Confidence 34579996432 222345789999999999986543332222222 357899999999999642 22222222110
Q ss_pred --hC--CCcEEEEecCCccCHHHHHHHHHH
Q 017187 99 --SC--KQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 99 --~~--g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
.. ..+++++||+++.|++++++++..
T Consensus 218 ~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 11 136899999999999999998854
No 340
>PLN03108 Rab family protein; Provisional
Probab=97.80 E-value=0.00015 Score=66.09 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=64.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~ 98 (375)
..||+.. ........+..+|++|+|+|+..+.+..+ ..+... ....|+++|.||+||.... ..+...++.+
T Consensus 61 Dt~G~~~-~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~ 139 (210)
T PLN03108 61 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK 139 (210)
T ss_pred eCCCcHH-HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH
Confidence 4677643 22233466789999999999976543221 112111 2468999999999997532 1222233334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+.+..++.+|++++.+++++++++.+.+
T Consensus 140 ~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999887765544
No 341
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.79 E-value=4.8e-05 Score=66.46 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|.+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999986
No 342
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.79 E-value=6.3e-05 Score=69.24 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++++++|.+|||||||++.+.. +. -.....+..|++.....+..... -.+.++||||...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~-~~---------f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GE---------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh-CC---------CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 4568999999999999999999875 11 11222333444433322322221 2478999999754
No 343
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00016 Score=73.45 Aligned_cols=110 Identities=24% Similarity=0.246 Sum_probs=70.8
Q ss_pred cceEEeeCC-Ccccc--cchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 14 GEMGFTKGG-GNINW--FPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 14 g~~~~~~~~-~~~~w--fpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
|.-...... .+++. =|||++ +..|+.+ ..-+|+|++|+.|.+....+-.+-... ..+.|+++.+||||....
T Consensus 191 GAF~V~~p~G~~iTFLDTPGHaA--F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 191 GAFTVTLPSGKSITFLDTPGHAA--FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred ceEEEecCCCCEEEEecCCcHHH--HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 444444433 33443 589975 4556565 566799999999987655433222222 467999999999997533
Q ss_pred hhHHHHHHHHh-------hCC--CcEEEEecCCccCHHHHHHHHHHHH
Q 017187 88 NILNKWVRHFD-------SCK--QDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 88 ~~~~~~~~~~~-------~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
. .++..+.+- +.| .+++++|++++.|++.|.+.+.-..
T Consensus 269 ~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 269 N-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred C-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 2 222222221 222 3789999999999999988775443
No 344
>PLN03110 Rab GTPase; Provisional
Probab=97.77 E-value=7.5e-05 Score=68.49 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|||||||++.|.+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~ 34 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999986
No 345
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.76 E-value=4.7e-05 Score=66.52 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+|.+|||||||+|.+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~ 20 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT 20 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999986
No 346
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.75 E-value=0.00013 Score=66.65 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=65.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+... ..-....+.++|++|+|+|...+.+-.+ ..+.+. . ...|+++|.||+|+.+... .+...++.
T Consensus 58 Dt~G~~~~-~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~ 136 (211)
T cd04111 58 DTAGQERF-RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA 136 (211)
T ss_pred eCCcchhH-HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence 46887432 2223456789999999999987533211 111211 1 2356788999999975322 11222222
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+..++.+|++++.|++++++.+.+.+.+
T Consensus 137 ~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 137 KDLGMKYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred HHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3445778999999999999999999876654
No 347
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.75 E-value=2.6e-05 Score=65.57 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=57.7
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC-------chhHhhccC-CCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA-------HPGLQPQLS-AKRRVIALNKKDLANPNILNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~-------~~~l~~~~~-~kp~IiVlNK~DL~~~~~~~~~~~~~ 97 (375)
-..|||.... .......++++.++.++|......+. ...+.+... +.|+++|+||+|+............+
T Consensus 55 ~D~~G~~~~~-~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 133 (161)
T TIGR00231 55 LDTAGQEDYR-AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLF 133 (161)
T ss_pred EECCCcccch-HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHH
Confidence 3477764431 11223355666666666654431111 112222222 78999999999998754333333333
Q ss_pred hhC-CCcEEEEecCCccCHHHHHHHHH
Q 017187 98 DSC-KQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 98 ~~~-g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
... ..+++++||.++.|+.++.++|.
T Consensus 134 ~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 134 AKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhccCCceEEeecCCCCCHHHHHHHhh
Confidence 322 34689999999999999988764
No 348
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.75 E-value=8.3e-05 Score=65.42 Aligned_cols=21 Identities=48% Similarity=0.649 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|.+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~ 22 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK 22 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999996
No 349
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.75 E-value=3.5e-05 Score=66.88 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.||||||||++++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 378999999999999999985
No 350
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.75 E-value=6.6e-05 Score=66.35 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
..++++++|.+|||||||++.+.. + ... ...|.+..+...+.. ..-.+.++||||..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~-~----------~~~--~~~~t~~~~~~~~~~-~~~~l~l~D~~G~~ 68 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL-G----------ESV--TTIPTIGFNVETVTY-KNISFTVWDVGGQD 68 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc-C----------CCC--CcCCccccceEEEEE-CCEEEEEEECCCCh
Confidence 468999999999999999999964 1 111 122322222222322 22357899999964
No 351
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.74 E-value=0.00018 Score=62.97 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=60.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc-----cCCCCEEEEEEcCCCCChhhH-HHHH-HHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ-----LSAKRRVIALNKKDLANPNIL-NKWV-RHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~-----~~~kp~IiVlNK~DL~~~~~~-~~~~-~~~ 97 (375)
..||+......-....++++|++++|+|+..+.+..+. .+... ..+.|+++|.||+|+...... .... ++.
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 136 (170)
T cd04115 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA 136 (170)
T ss_pred eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH
Confidence 35776432212234557899999999999865433221 11111 245899999999998643221 1222 222
Q ss_pred hhCCCcEEEEecCC---ccCHHHHHHHHHHH
Q 017187 98 DSCKQDYIAINAHS---RSSVQKLLELVELK 125 (375)
Q Consensus 98 ~~~g~~vi~iSa~~---~~gvk~Ll~~L~~~ 125 (375)
+....+++.+||++ +.++++++..+.+.
T Consensus 137 ~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 137 DAHSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred HHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 23446788999998 67788877766544
No 352
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.74 E-value=8.5e-05 Score=64.52 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|||||||++.+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 353
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.73 E-value=0.00021 Score=62.88 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=65.8
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--h---hHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--P---GLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVR 95 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~---~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~ 95 (375)
+-+.||+.... ......+..+|.+++|+|.....+-.. . .+.+. ..+.|+++|.||+|+..... ......
T Consensus 53 l~D~~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 131 (180)
T cd04137 53 IVDTAGQDEYS-ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE 131 (180)
T ss_pred EEECCChHhhH-HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence 34678874321 222346778999999999875322110 0 11111 24579999999999974321 122223
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+..+.+++.+|++++.|+.++++++.+.+..
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 132 LAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 333445678999999999999999999877654
No 354
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.73 E-value=4.8e-05 Score=68.10 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|.+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~ 21 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL 21 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999985
No 355
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.73 E-value=0.00014 Score=76.64 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=56.4
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLEL 121 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~~ 121 (375)
..+|+|+.|+|+..... ......+. ..++|+++|+||+|+.++.......+.+ +..+.+++++||+++.|++++.+.
T Consensus 71 ~~aDvvI~VvDat~ler-~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 71 EKPDLVVNVVDASNLER-NLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCCEEEEEecCCcchh-hHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 47999999999976321 11122222 3578999999999997543322222233 245678999999999999999999
Q ss_pred HHHH
Q 017187 122 VELK 125 (375)
Q Consensus 122 L~~~ 125 (375)
+.+.
T Consensus 150 i~~~ 153 (591)
T TIGR00437 150 IRKA 153 (591)
T ss_pred HHHH
Confidence 8764
No 356
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.73 E-value=0.00025 Score=74.58 Aligned_cols=99 Identities=21% Similarity=0.133 Sum_probs=62.6
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh--------------
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI-------------- 89 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~-------------- 89 (375)
-.-|||-.. .......+..+|++++|+|++...........+. ..++|+++|+||+|+.+...
T Consensus 74 iDTpG~e~f-~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 74 IDTPGHEAF-TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred EECCCcHhH-HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 346898432 2223345789999999999987544332222222 35789999999999974210
Q ss_pred ---H-HHH-------HHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHHH
Q 017187 90 ---L-NKW-------VRHFDSC---------------KQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 90 ---~-~~~-------~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+ ..+ ...+.+. ..+++++||+++.|+++|+.++...
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0 000 0111111 2478999999999999999987543
No 357
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.72 E-value=6e-05 Score=69.48 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||++.+..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~ 22 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTS 22 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3699999999999999999975
No 358
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.72 E-value=0.00011 Score=67.79 Aligned_cols=98 Identities=16% Similarity=0.057 Sum_probs=63.3
Q ss_pred cchhHHHHHHHHHHHhh-hcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187 28 FPGHMAAATRAIKHRLK-ISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHF 97 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~-~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~ 97 (375)
.||+- ..++ ...+. .+|++++|+|+.++.+-.+ ..+..+ ..+.|+|+|.||+|+.+.... +...++.
T Consensus 57 t~G~~-~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a 133 (221)
T cd04148 57 HWEQE-MWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA 133 (221)
T ss_pred CCCcc-hHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH
Confidence 57764 1222 12345 8999999999987643221 111111 146899999999999754321 1122222
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
...+.+++.+||+++.|++++++++.+.+..
T Consensus 134 ~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 134 VVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 2345678999999999999999998877653
No 359
>PLN03108 Rab family protein; Provisional
Probab=97.72 E-value=8.1e-05 Score=67.95 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|||||||+|.|.+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~ 28 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 360
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.72 E-value=0.00022 Score=67.85 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=75.2
Q ss_pred ceEEeeCCCccc---ccchhHHHH-HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCCh
Q 017187 15 EMGFTKGGGNIN---WFPGHMAAA-TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 15 ~~~~~~~~~~~~---wfpgHm~k~-~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~ 87 (375)
+.+|-++|+-+. -.-.||... +...+..+.++|+|+.|+|+..+-...++.+.+. ....|-|+|+||+|....
T Consensus 121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ 200 (379)
T ss_pred EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh
Confidence 456666664321 122233332 3567788999999999999987666556644333 356889999999997643
Q ss_pred hh-----------------HHHHHHHHhh----------CCC----cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 88 NI-----------------LNKWVRHFDS----------CKQ----DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 88 ~~-----------------~~~~~~~~~~----------~g~----~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.. ..+|.+.|.. +|. ++|++|+.+|+|++++.++|....+.
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 21 1134444321 111 58999999999999999999877654
No 361
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.70 E-value=5.8e-05 Score=79.24 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...|+++|.+|+|||||+|+|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~ 26 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRG 26 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999997
No 362
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.70 E-value=9.8e-05 Score=64.51 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=57.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhh-H-------------HHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNI-L-------------NKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~-~-------------~~~~~~~~~~ 100 (375)
..++.+|++|+|+|...+.+-.+. .+..+ ..++|+++|.||+|+.+... . ++..++.++.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 357899999999999765332211 11111 34789999999999975321 0 1111222234
Q ss_pred CC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 101 g~-~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+. .++.+||+++.|++++++.+.+.+
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 43 788999999999999998886553
No 363
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.70 E-value=9.4e-05 Score=71.36 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=63.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCch---------hHhhc---cCCCCEEEEEEcCCC-CChhhHHHHHHHHhh-CCCc
Q 017187 38 AIKHRLKISDLVIEVRDSRIPLSSAHP---------GLQPQ---LSAKRRVIALNKKDL-ANPNILNKWVRHFDS-CKQD 103 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p~s~~~~---------~l~~~---~~~kp~IiVlNK~DL-~~~~~~~~~~~~~~~-~g~~ 103 (375)
+..+-+++|-++++|+|... ....+| +|..+ +.+||.++|+||+|+ .+.+..+...+++.+ .+..
T Consensus 230 ~FLrHIERt~vL~hviD~s~-~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSP-IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE 308 (369)
T ss_pred HHHHHHHhhheeEEEEecCc-ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence 44556889999999999752 111111 23333 568999999999995 455667777777753 3433
Q ss_pred EE-EEecCCccCHHHHHHHHHHHHhh
Q 017187 104 YI-AINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 104 vi-~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.. ++|+.++.|++.|+..+.+.+..
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHH
Confidence 22 39999999999999998887765
No 364
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.70 E-value=8e-05 Score=64.67 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||++.+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999964
No 365
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.70 E-value=8.5e-05 Score=65.21 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=60.3
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh------------
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI------------ 89 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~------------ 89 (375)
.||+.... ......++++|++|+|+|...+.+-.+ ..+..+ ..+.|+++|.||+||.+...
T Consensus 55 t~G~~~~~-~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 133 (173)
T cd04130 55 TAGQDEFD-KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKP 133 (173)
T ss_pred CCCChhhc-cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCC
Confidence 67763321 111235689999999999987644322 112222 24689999999999975321
Q ss_pred --HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHH
Q 017187 90 --LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 90 --~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.++...+.++.+. .++.+||+++.|++++.+.+.
T Consensus 134 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 134 VSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred cCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1122233333444 789999999999999987653
No 366
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.69 E-value=7.7e-05 Score=64.74 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=61.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..||+... ..-....++.+|++++|+|+..+.+.... .+.. ...++|+++|+||+|+.+....
T Consensus 54 D~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (171)
T cd00157 54 DTAGQEEY-DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEP 132 (171)
T ss_pred eCCCcccc-cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence 36776532 11112345789999999999765332111 1111 1346999999999999765422
Q ss_pred ---HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHH
Q 017187 91 ---NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 91 ---~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+...++....+. .++.+|++++.|++++++.+.+
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 133 ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 112222233344 7899999999999999888753
No 367
>PRK12735 elongation factor Tu; Reviewed
Probab=97.69 E-value=7.2e-05 Score=75.09 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=45.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG 202 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG 202 (375)
..+.++++++|.+|+|||||+|+|++.-.. .++.+ ........|+|.+.....+. .+.++.++||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK----KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhh----cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence 466789999999999999999999862100 01111 01112256888887644442 234688999999
Q ss_pred CC
Q 017187 203 VL 204 (375)
Q Consensus 203 i~ 204 (375)
..
T Consensus 85 h~ 86 (396)
T PRK12735 85 HA 86 (396)
T ss_pred HH
Confidence 73
No 368
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.69 E-value=8.2e-05 Score=65.01 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHH-----
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHF----- 97 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~----- 97 (375)
.||+.. ........++++|.+|+|+|+..+.+-.+ ..+.++ ..++|+++|.||+|+..........+.+
T Consensus 51 t~G~~~-~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~ 129 (164)
T cd04162 51 IGGSQN-LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPI 129 (164)
T ss_pred CCCCcc-hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh
Confidence 577632 22223356899999999999877542111 122222 2578999999999997543333322222
Q ss_pred -hhCCCcEEEEecCC------ccCHHHHHHHHH
Q 017187 98 -DSCKQDYIAINAHS------RSSVQKLLELVE 123 (375)
Q Consensus 98 -~~~g~~vi~iSa~~------~~gvk~Ll~~L~ 123 (375)
++.+..++.+||++ ++|++++++.+.
T Consensus 130 ~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 130 ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred cCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 23355677788877 788888777653
No 369
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.69 E-value=0.00041 Score=59.21 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred cceEEeeCCCcc---cc-cchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCC--CCchhHhhc-----cCCCCEEEEEEc
Q 017187 14 GEMGFTKGGGNI---NW-FPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLS--SAHPGLQPQ-----LSAKRRVIALNK 81 (375)
Q Consensus 14 g~~~~~~~~~~~---~w-fpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s--~~~~~l~~~-----~~~kp~IiVlNK 81 (375)
|.-+.++..++. -| .||. .-.+.++++ -+.+|+|++|+||.+|-. ..-.++.++ ..+.|.+++-||
T Consensus 54 Gfnmrk~tkgnvtiklwD~gGq--~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 54 GFNMRKVTKGNVTIKLWDLGGQ--PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred cceeEEeccCceEEEEEecCCC--ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 444555555442 34 4554 344555554 689999999999987532 122234333 467999999999
Q ss_pred CCCCChhhHHHHHHHHh-----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 82 KDLANPNILNKWVRHFD-----SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 82 ~DL~~~~~~~~~~~~~~-----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.|+.+.-.-...+..+. ...+-++.+||+...+++.+++|+.++.+.
T Consensus 132 ~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 132 IDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred ccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 99976543334444331 222357889999999999999999887654
No 370
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.68 E-value=0.00022 Score=63.48 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~ 98 (375)
..||+- +........++.+|.+|+|+|...+.+-.+ ..+ ... ....|+++|.||+|+.+.... .....+.+
T Consensus 55 Dt~g~~-~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~ 133 (188)
T cd04125 55 DTNGQE-RFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCD 133 (188)
T ss_pred ECCCcH-HHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHH
Confidence 356652 222234567889999999999976533211 111 111 234789999999999743211 11122223
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++.+.+.+..
T Consensus 134 ~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 134 SLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 346688999999999999999988766543
No 371
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.68 E-value=9.6e-05 Score=63.84 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..+.++|.+++|+|..++.+-.+ .. +.+. ..++|+++|.||+|+.+.... .....+-+..+.+++.+||++
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKS 147 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCC
Confidence 45789999999999876543211 11 1111 146899999999999653221 111222223456789999999
Q ss_pred ccCHHHHHHHHHHH
Q 017187 112 RSSVQKLLELVELK 125 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~ 125 (375)
+.|+.+++.++.+.
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd04176 148 KTMVNELFAEIVRQ 161 (163)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999887653
No 372
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.68 E-value=0.0001 Score=60.38 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+|+|.+||||||||++|.+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999997
No 373
>PTZ00369 Ras-like protein; Provisional
Probab=97.68 E-value=7.8e-05 Score=66.67 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++++|.+|||||||++.+..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999986
No 374
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0002 Score=70.70 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=76.8
Q ss_pred HHHHHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CC---CchhHhhc
Q 017187 4 KRIIKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SS---AHPGLQPQ 69 (375)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~---~~~~l~~~ 69 (375)
++.-.||+++..++..+...+ |-.-||| +.-.+.|..-+.++|+.|+|+||+.+- .. +...|.+.
T Consensus 64 keERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t 142 (428)
T COG5256 64 KEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART 142 (428)
T ss_pred hhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh
Confidence 445567887777777777755 4568997 677788888899999999999998761 11 22234444
Q ss_pred cCCCCEEEEEEcCCCCCh--hhHHH----HHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187 70 LSAKRRVIALNKKDLANP--NILNK----WVRHFDSCK-----QDYIAINAHSRSSVQK 117 (375)
Q Consensus 70 ~~~kp~IiVlNK~DL~~~--~~~~~----~~~~~~~~g-----~~vi~iSa~~~~gvk~ 117 (375)
++-..+|+++||+|+++- +..++ ...+.+..| .+++++|+.+|.++.+
T Consensus 143 lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 143 LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 666778999999999853 22222 222222334 3589999998877643
No 375
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.67 E-value=5.3e-05 Score=64.99 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+||.+++|||||+++|.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 699999999999999999997
No 376
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.67 E-value=5.7e-05 Score=80.93 Aligned_cols=60 Identities=27% Similarity=0.474 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec---cCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA---HRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~---~~~~~~liDTPGi~ 204 (375)
.+...|+++|.+|+|||||+++|+.. ....+..+|+|++...+. +. ....+.++||||..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~------------~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKT------------QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhc------------cCccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 45678999999999999999999861 112233467777655332 21 12468999999964
No 377
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.66 E-value=7.9e-05 Score=80.48 Aligned_cols=61 Identities=28% Similarity=0.510 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
.+...|+++|.+|+|||||+++|++. . ...+..+|+|++...+.+. .+..+.++||||...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~-----------~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~ 349 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT-----------N-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA 349 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-----------C-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence 45678999999999999999999861 1 2233456888877654432 134689999999754
No 378
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.66 E-value=0.0003 Score=61.25 Aligned_cols=97 Identities=12% Similarity=-0.039 Sum_probs=62.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--------cCCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--------LSAKRRVIALNKKDLANPNI-LNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--------~~~kp~IiVlNK~DL~~~~~-~~~~~~ 95 (375)
..||+... .......++.+|++++|+|...+.+... ..+..+ ..+.|+++|.||+|+..... .++..+
T Consensus 60 D~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (170)
T cd04116 60 DTAGQERF-RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA 138 (170)
T ss_pred eCCChHHH-HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH
Confidence 47887532 2223456789999999999876532221 111111 13479999999999964322 223333
Q ss_pred HHhhCC-CcEEEEecCCccCHHHHHHHHHH
Q 017187 96 HFDSCK-QDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 96 ~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+.++.+ ..++.+||+++.|+.++++.+.+
T Consensus 139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 139 WCRENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 333444 36889999999999999888754
No 379
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.64 E-value=0.00011 Score=64.34 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+++++|.+|||||||++.+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999986
No 380
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.64 E-value=0.00018 Score=66.49 Aligned_cols=100 Identities=14% Similarity=-0.008 Sum_probs=62.4
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCCh--------------
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANP-------------- 87 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~-------------- 87 (375)
.||+... ..-....+..+|++|+|+|+..+.+-.+. .+..+ ..+.|+|+|.||+||.+.
T Consensus 51 t~G~e~~-~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~ 129 (220)
T cd04126 51 TAGREQF-HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRV 129 (220)
T ss_pred CCCcccc-hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccc
Confidence 4666322 12223457899999999999875432221 12111 235789999999999751
Q ss_pred -----h--hHHHHHHHHhhCC--------------CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 88 -----N--ILNKWVRHFDSCK--------------QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 88 -----~--~~~~~~~~~~~~g--------------~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
. ..++..++.++.+ ..++.+||+++.|+++++..+.+.+..
T Consensus 130 ~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 130 SPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0 1122323322222 467899999999999999888766543
No 381
>PLN03127 Elongation factor Tu; Provisional
Probab=97.64 E-value=0.00012 Score=74.69 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=46.1
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccc--------cccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKT--------KRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPG 202 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPG 202 (375)
....++++++|.+|+|||||+++|.+.... .|+. ........+|+|++.....+.. +.++.++||||
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE----EGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHH----hhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence 366789999999999999999999752100 0111 0111223479999987544433 23688999999
Q ss_pred CC
Q 017187 203 VL 204 (375)
Q Consensus 203 i~ 204 (375)
..
T Consensus 134 h~ 135 (447)
T PLN03127 134 HA 135 (447)
T ss_pred cc
Confidence 85
No 382
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.62 E-value=0.00029 Score=78.01 Aligned_cols=101 Identities=20% Similarity=0.131 Sum_probs=64.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh-------------
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI------------- 89 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~------------- 89 (375)
+-.-|||..... ........+|++++|+|+...+........+. ..++|+++|+||+|+.+...
T Consensus 530 fiDTPGhe~F~~-lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~ 608 (1049)
T PRK14845 530 FIDTPGHEAFTS-LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE 608 (1049)
T ss_pred EEECCCcHHHHH-HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh
Confidence 345799854422 22335677999999999987554433322222 34689999999999974211
Q ss_pred -----HHHH-------HHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 90 -----LNKW-------VRHFDSC---------------KQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 90 -----~~~~-------~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.++. ...+.+. ..+++++||++|.|+++|+.++....
T Consensus 609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0011 0111111 23689999999999999998876543
No 383
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.61 E-value=0.00015 Score=65.55 Aligned_cols=84 Identities=12% Similarity=-0.047 Sum_probs=57.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCCh--------------------h-hHHHH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANP--------------------N-ILNKW 93 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~--------------------~-~~~~~ 93 (375)
..++++|++|+|.|...+.+-.+. ++... ..+.|+++|.||+||.+. . ..++.
T Consensus 83 ~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~ 162 (195)
T cd01873 83 FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETG 162 (195)
T ss_pred ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHH
Confidence 357899999999999876543321 11222 246799999999999631 0 11222
Q ss_pred HHHHhhCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 94 VRHFDSCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
.++-++.+..++.+||+++.|++++++.+.+
T Consensus 163 ~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 163 RAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 2333345677889999999999999887754
No 384
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.61 E-value=0.00014 Score=64.73 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi 203 (375)
...++|+++|.+|||||||++.+.. + ......+..|. +...+... .-.+.++||||-
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~-~----------~~~~~~pt~g~--~~~~~~~~-~~~~~i~D~~Gq 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL-G----------EIVTTIPTIGF--NVETVEYK-NISFTVWDVGGQ 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc-C----------CCccccCCcce--eEEEEEEC-CEEEEEEECCCC
Confidence 4557999999999999999999974 1 11222222232 22222222 224789999995
No 385
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.61 E-value=0.00015 Score=63.95 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++++|.+|||||||++.+..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~ 24 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS 24 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh
Confidence 36899999999999999999986
No 386
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.61 E-value=0.00014 Score=66.21 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc---cCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA---HRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~---~~~~~~liDTPGi~~ 205 (375)
+|+++|.+|||||||++.|.. .+...+ .+.++.....+... ....+.++||||...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~-----------~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT-----------GKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhc-----------CCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence 589999999999999999986 111111 12222222222221 233588999999653
No 387
>PRK00049 elongation factor Tu; Reviewed
Probab=97.61 E-value=0.00011 Score=73.76 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=45.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG 202 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG 202 (375)
....++++++|.+|+|||||+++|++.... .++.. ........|+|.+.....+. .+.++.++||||
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK----KGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhh----ccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 466789999999999999999999862100 00000 00111256899888754442 233688999999
Q ss_pred CC
Q 017187 203 VL 204 (375)
Q Consensus 203 i~ 204 (375)
..
T Consensus 85 ~~ 86 (396)
T PRK00049 85 HA 86 (396)
T ss_pred HH
Confidence 74
No 388
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.60 E-value=6.5e-05 Score=79.88 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|+|||||+|.|+.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHH
Confidence 5568999999999999999999986
No 389
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.59 E-value=0.00027 Score=61.38 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhh---c-cCCCCEEEEEEcCCCCChhhH--HHHHHHHhh
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQP---Q-LSAKRRVIALNKKDLANPNIL--NKWVRHFDS 99 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~---~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~ 99 (375)
.+|.. +........+..+|++++|+|...+-+-.+ ..+.+ . ....|+++|.||+||...... ++...+.+.
T Consensus 56 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~ 134 (161)
T cd04117 56 TAGQE-RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE 134 (161)
T ss_pred CCCcH-hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence 45543 222334456789999999999876533211 11111 1 235789999999999654321 222222223
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHH
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
.+.+++.+||+++.|+++++.+|.+
T Consensus 135 ~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 135 YGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 4567899999999999999988754
No 390
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.59 E-value=0.00048 Score=72.49 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=62.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhh--------------
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNI-------------- 89 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~-------------- 89 (375)
-.-|||-.. .......+..+|++++|+|++............+ ..+.|+++++||+|+.+...
T Consensus 76 iDTPG~e~f-~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 76 IDTPGHEAF-TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred EECCChHHH-HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 346898543 2333346788999999999987543322222222 35789999999999863210
Q ss_pred ---H--------HHHHHHHhhC---------------CCcEEEEecCCccCHHHHHHHHHH
Q 017187 90 ---L--------NKWVRHFDSC---------------KQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 90 ---~--------~~~~~~~~~~---------------g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
. .+...++.+. ..+++++|+.++.|+++|++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 0111222211 136799999999999999887754
No 391
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.58 E-value=0.00011 Score=64.14 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
|+++|.+|||||||++.+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~ 21 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999996
No 392
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.58 E-value=0.00034 Score=65.75 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=57.1
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--hhHhhc-------------cCCCCEEEEEEcCCCCChh--hHHHHHHHHh-hCCCc
Q 017187 42 RLKISDLVIEVRDSRIPLSSAH--PGLQPQ-------------LSAKRRVIALNKKDLANPN--ILNKWVRHFD-SCKQD 103 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~--~~l~~~-------------~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~-~~g~~ 103 (375)
.+..+|++|+|+|...+.+-.+ ..+.++ ..++|+|+|.||+|+.... ..++..+++. ..+..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 4678999999999876532111 111111 1368999999999997421 2233333332 22457
Q ss_pred EEEEecCCccCHHHHHHHHHHHH
Q 017187 104 YIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 104 vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
++.+||+++.|++++++.+....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999987755
No 393
>PLN03110 Rab GTPase; Provisional
Probab=97.57 E-value=0.00034 Score=64.17 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH-HHHHHHH-hh
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL-NKWVRHF-DS 99 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~-~~ 99 (375)
.||+.. ........++.+|.+|+|+|.+.+.+..+ ..+..+ ..+.|+++|.||+||...... .+..+.+ ..
T Consensus 68 t~G~~~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~ 146 (216)
T PLN03110 68 TAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK 146 (216)
T ss_pred CCCcHH-HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH
Confidence 577632 22334456889999999999986543221 112111 136899999999999643221 1122222 23
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+.+++.+||+++.|++++++.+...+.+
T Consensus 147 ~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 147 EGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999998776654
No 394
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.56 E-value=0.00013 Score=69.13 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|+|||||+|+|+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 395
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00012 Score=64.01 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=86.8
Q ss_pred cccccceEEeeCCCcccccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCC--CchhHhhc-----cCCCCEEEEEEc
Q 017187 10 GLGLGEMGFTKGGGNINWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSS--AHPGLQPQ-----LSAKRRVIALNK 81 (375)
Q Consensus 10 ~~~~g~~~~~~~~~~~~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~--~~~~l~~~-----~~~kp~IiVlNK 81 (375)
-.|++...+.+...+.+.+-+.-++.++.+++. ...|+.||+|+||.++--- ....+... ..+.|+++.+||
T Consensus 56 tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 56 TVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 347788888888777766666668888888875 6899999999999763111 11112221 568999999999
Q ss_pred CCCCChhhHHHHHHHHh------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 82 KDLANPNILNKWVRHFD------SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 82 ~DL~~~~~~~~~~~~~~------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.|+.+....++....+. +....+.++|+..++|+++-+.|+...++.
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 99987665555554443 223468899999999999999998877654
No 396
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.56 E-value=0.00053 Score=64.13 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc
Q 017187 113 SSVQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA 190 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~ 190 (375)
..+..|++.+.+..... ...-...+++++|.+|+||||++|+|.+ .........-.|+....+.+.
T Consensus 2 ~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g------------~~~~~~~~g~~t~~p~~i~l~ 69 (240)
T smart00053 2 EKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVG------------RDFLPRGSGIVTRRPLILQLI 69 (240)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhC------------CCccccCCCcccccceEEEcc
Q ss_pred cC-----------------------------------------------------CcEEEEEcCCCCCCCCCChhHHHHH
Q 017187 191 HR-----------------------------------------------------PSIYVLDTPGVLVPSIPDIETGLKL 217 (375)
Q Consensus 191 ~~-----------------------------------------------------~~~~liDTPGi~~~~~~~~~~~~~l 217 (375)
.. ++++++||||+......+.......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~ 149 (240)
T smart00053 70 NSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE 149 (240)
T ss_pred CCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH
Q ss_pred HHhhccc
Q 017187 218 ALSGSIK 224 (375)
Q Consensus 218 al~~~i~ 224 (375)
.+...+.
T Consensus 150 ~i~~lv~ 156 (240)
T smart00053 150 QIKDMIK 156 (240)
T ss_pred HHHHHHH
No 397
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.56 E-value=0.0002 Score=63.37 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||++.+..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~ 23 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT 23 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999985
No 398
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.55 E-value=7.1e-05 Score=61.97 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=16.9
Q ss_pred EEcCCCCChHHHHHHHHh
Q 017187 140 VVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 140 vvG~pnvGKSsliN~L~~ 157 (375)
++|.+|+|||||+|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~ 18 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG 18 (157)
T ss_pred CCCcCCCcHHHHHHHHHh
Confidence 589999999999999997
No 399
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.55 E-value=0.00021 Score=62.65 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||++++..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 400
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.55 E-value=0.0002 Score=66.16 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||++.+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~ 22 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME 22 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999986
No 401
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.55 E-value=0.00023 Score=63.36 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=58.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh------------hHHHHHHHHhhCCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN------------ILNKWVRHFDSCKQ 102 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~g~ 102 (375)
..++++|.+|+|.|...+.+-.+. ++..+ ..+.|+++|.||+||.+.. ..++..++-+..+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 467899999999999876553321 12222 3468999999999996431 11222223334455
Q ss_pred -cEEEEecCCccCHHHHHHHHHHHH
Q 017187 103 -DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 103 -~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.++.+||+++.+++++++.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 478999999999999999887654
No 402
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.55 E-value=0.0003 Score=61.29 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=62.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc-----hhHhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH-----PGLQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..|||... ..-....+..+|.+++|+|...+.+-.. ..+.+. ..+.|+++|.||+|+.+... .+...+..
T Consensus 55 Dt~G~~~~-~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 133 (168)
T cd04177 55 DTAGTEQF-TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS 133 (168)
T ss_pred eCCCcccc-hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH
Confidence 46787542 1223345789999999999876432211 112121 24689999999999975432 11222222
Q ss_pred hhCC-CcEEEEecCCccCHHHHHHHHHHHH
Q 017187 98 DSCK-QDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 98 ~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
++.+ .+++.+||+++.|++++++++...+
T Consensus 134 ~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 134 QQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2334 5789999999999999998886543
No 403
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.54 E-value=0.00021 Score=63.13 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=55.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhh--------------HHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNI--------------LNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~ 100 (375)
..++.+|++|+|+|...+.+-.+. .+..+ ..+.|+++|.||+||.+... .++..++.++.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 467899999999999876433221 11111 24689999999999964211 11111222233
Q ss_pred C-CcEEEEecCCccCHHHHHHHHHH
Q 017187 101 K-QDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 101 g-~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+ ..++.+||+++.|++++++.+.+
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHH
Confidence 4 36789999999999999887754
No 404
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.53 E-value=0.00021 Score=63.94 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=57.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHH--------------HHHHHHhhCC
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILN--------------KWVRHFDSCK 101 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~--------------~~~~~~~~~g 101 (375)
.+..+|++|+|.|...+.+-.+. .+..+ ..+.|+++|.||+||....... +-.+..++.+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46789999999998776433211 12222 3468999999999997543211 1112222223
Q ss_pred -CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 102 -QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 102 -~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..++.+||+++.|++++++++.+.+.
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 46889999999999999999877654
No 405
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.53 E-value=0.00023 Score=62.09 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=54.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChhhH--------------HHHHHHHhhCC
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPNIL--------------NKWVRHFDSCK 101 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~~~--------------~~~~~~~~~~g 101 (375)
.+..+|++++|+|...+-+..+. .+.....+.|+++|.||+||.+.... +...++.++.+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46799999999998766432111 11112357899999999998643211 11111222334
Q ss_pred C-cEEEEecCCccCHHHHHHHHHHH
Q 017187 102 Q-DYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 102 ~-~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
. .++.+||+++.|++++++.+...
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 3 57889999999999998877543
No 406
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.52 E-value=0.00022 Score=66.62 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|+|||||+|+|+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~ 21 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLY 21 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 407
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.51 E-value=0.00025 Score=62.66 Aligned_cols=84 Identities=11% Similarity=0.039 Sum_probs=55.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhHH-------------HHHH-HHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNILN-------------KWVR-HFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~~-------------~~~~-~~~~~ 100 (375)
..+.++|++|+|+|...+.+-.+. .+... ..+.|+++|.||+||.+..... +..+ +.++.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 367899999999999776443221 11111 3468999999999996532111 1111 11223
Q ss_pred C-CcEEEEecCCccCHHHHHHHHHH
Q 017187 101 K-QDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 101 g-~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+ ..++.+||+++.|++++++.+..
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 3 46899999999999999887754
No 408
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.51 E-value=0.00039 Score=66.22 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--h-HHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--I-LNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~-~~~~~~~~~~~g 101 (375)
.-|||.. -...+...+..+|++|+|+|+..........+.+. ..++|+++++||+|+...+ . .+...+.+....
T Consensus 70 DTPG~~d-f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~ 148 (270)
T cd01886 70 DTPGHVD-FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANP 148 (270)
T ss_pred ECCCcHH-HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCc
Confidence 4699964 33557789999999999999987655443333333 4578999999999997532 1 233333332111
Q ss_pred C-cEEEEecC
Q 017187 102 Q-DYIAINAH 110 (375)
Q Consensus 102 ~-~vi~iSa~ 110 (375)
. .++++|+.
T Consensus 149 ~~~~~Pisa~ 158 (270)
T cd01886 149 VPLQLPIGEE 158 (270)
T ss_pred eEEEeccccC
Confidence 1 35666664
No 409
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.51 E-value=0.00019 Score=68.83 Aligned_cols=63 Identities=29% Similarity=0.360 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
.....|.+||++|+|||||||+|....... . . +-.++- -+|++. ..+.++..+.+.||-||.+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~--d-rLFATL----DpT~h~--a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-N--D-RLFATL----DPTLHS--AHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-c--c-hhheec----cchhhh--ccCCCCcEEEEeechhhhh
Confidence 445689999999999999999999622111 0 0 011211 123332 2355666688899999986
No 410
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.50 E-value=0.00033 Score=75.83 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=58.1
Q ss_pred hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCccCHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
..+|+|+.|+|+.... ++..+ .+. ..++|+++|+||+|+.++.......+.+. ..+.+++++|+.++.|++++.+
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 4899999999997632 22222 222 45799999999999975433332233332 4578899999999999999999
Q ss_pred HHHHHH
Q 017187 121 LVELKL 126 (375)
Q Consensus 121 ~L~~~l 126 (375)
.+....
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 887654
No 411
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.50 E-value=0.00016 Score=65.16 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||+|.+..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~ 21 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999986
No 412
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.49 E-value=0.00045 Score=64.29 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=58.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc---hh---HhhccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH---PG---LQPQLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~---~~---l~~~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~ 100 (375)
..+..+|++|+|.|...+.+-.+ .+ +.+...+.|+++|.||+||.+. ...++..++.++.
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~ 159 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL 159 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence 45789999999999987654332 11 2222346799999999999531 1122333333445
Q ss_pred CC-cEEEEecCCcc-CHHHHHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRS-SVQKLLELVELKL 126 (375)
Q Consensus 101 g~-~vi~iSa~~~~-gvk~Ll~~L~~~l 126 (375)
+. .++.+||+++. ++++++..+...+
T Consensus 160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 66 47889999997 7999988876654
No 413
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.49 E-value=0.00024 Score=65.70 Aligned_cols=58 Identities=26% Similarity=0.495 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
..+..++++|.||+|||||+|+|.+. .....++...|+.. +.......+.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~----------~~~~~~~~~~g~i~----i~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN----------YTKQNISDIKGPIT----VVTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh----------cccCccccccccEE----EEecCCceEEEEeCCchH
Confidence 55678999999999999999999862 11233334455311 111234468999999853
No 414
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.48 E-value=0.00023 Score=62.85 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+..+..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~ 23 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT 23 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999885
No 415
>PRK12736 elongation factor Tu; Reviewed
Probab=97.47 E-value=0.00024 Score=71.32 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=45.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPG 202 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPG 202 (375)
....++++++|.+++|||||+++|++.... .|+.. .....-..|+|.+.....+.. ...+.++||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE----RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG 84 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh----hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence 466789999999999999999999862100 01100 001112568898886544432 33688999999
Q ss_pred CC
Q 017187 203 VL 204 (375)
Q Consensus 203 i~ 204 (375)
..
T Consensus 85 h~ 86 (394)
T PRK12736 85 HA 86 (394)
T ss_pred HH
Confidence 54
No 416
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00069 Score=67.44 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=81.6
Q ss_pred HHHHhccc--ccceEEeeCCCc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC---chhHhhccCCCCEEE
Q 017187 5 RIIKKGLG--LGEMGFTKGGGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA---HPGLQPQLSAKRRVI 77 (375)
Q Consensus 5 ~~~~~~~~--~g~~~~~~~~~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~---~~~l~~~~~~kp~Ii 77 (375)
+--+||++ +|..-++..... +-.-||| .+-++.|...+.-+|..++|+|+.+.+..+ .-.+.+.++.+..++
T Consensus 30 EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~gii 108 (447)
T COG3276 30 EEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGII 108 (447)
T ss_pred hhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEE
Confidence 44456653 233334443333 4567999 566677778888999999999997544432 223333355556699
Q ss_pred EEEcCCCCChhhHHHHHHHHh-h---CCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 78 ALNKKDLANPNILNKWVRHFD-S---CKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 78 VlNK~DL~~~~~~~~~~~~~~-~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
|+||+|.+++..++...+.+. . ...+++.+|+.++.|+++|.+.|.+..
T Consensus 109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 999999998765544333331 1 123678899999999999999998887
No 417
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.46 E-value=0.00026 Score=71.00 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhh----hcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQI----ALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL 204 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~----g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~ 204 (375)
....++++++|.+++|||||+++|++. |.......---.........|+|.+.....+.. +..+.++||||..
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 466789999999999999999999852 111000000000001112368898876554433 2358899999975
No 418
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.45 E-value=0.00028 Score=63.11 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|||||||++.+.+
T Consensus 2 kivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 419
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.45 E-value=0.00034 Score=62.21 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||++.+.+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~ 23 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK 23 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 420
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.44 E-value=0.00025 Score=74.57 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+...|.++|.+|+|||||+|+|++
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~ 28 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRG 28 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999986
No 421
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.44 E-value=0.00022 Score=76.67 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhh-hccccccccccc-ccccC------CCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTK-RATVG------PLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~-~~~v~------~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~ 205 (375)
-.+|+++|.+|+|||||+|+|+.. |.+.. .++.. -..+. ...|+|.+.....+ ..+..+.++||||...
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 348999999999999999999852 21110 00000 00111 14577877653222 2334689999999975
Q ss_pred C
Q 017187 206 P 206 (375)
Q Consensus 206 ~ 206 (375)
.
T Consensus 88 ~ 88 (689)
T TIGR00484 88 F 88 (689)
T ss_pred h
Confidence 3
No 422
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.44 E-value=0.00016 Score=64.72 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhccccccccc------ccccccCCCCCeeeeeEEEEEc---cCCcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK------TKRATVGPLPGVTQDIAGFKIA---HRPSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k------~~~~~v~~~pg~T~~~~~~~i~---~~~~~~liDTPGi~ 204 (375)
..+|+++|..++|||||+++|............. ..........|.|.+....... ....+.++||||-.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999998622111000000 0001111223555555443333 33468999999963
No 423
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.43 E-value=0.0004 Score=60.91 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..++++++|.+|||||||++.+.+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC
Confidence 3567899999999999999999986
No 424
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.42 E-value=0.00025 Score=74.68 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGV 203 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi 203 (375)
+.|+++|.+|+|||||+|+|.+... ........+|+|.+.....+.. +..+.++||||.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~---------d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAA---------DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccC---------cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 3689999999999999999986210 0111122468888775322221 235789999995
No 425
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.42 E-value=0.00047 Score=60.21 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=54.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCChhhHHH-----------H---HHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANPNILNK-----------W---VRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~~~~~~-----------~---~~~~~~~ 100 (375)
..+.++|++++|.|...+.+-.+. . +.+...+.|+++|.||+|+.+...... + .++....
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 356899999999998765321111 1 111124789999999999875432111 1 1111122
Q ss_pred C-CcEEEEecCCccCHHHHHHHHHHH
Q 017187 101 K-QDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 101 g-~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+ ..++.+||+++.|++++++++.+.
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 3 368899999999999999988654
No 426
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.41 E-value=0.0003 Score=63.94 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||+|+|.+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhc
Confidence 7899999999999999999997
No 427
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.40 E-value=0.00052 Score=61.57 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHH-HHhhhcCeEEEEEeCCCCCCCCch--hHhh-c---cCCCCEEEEEEcCCCCChhh-----------
Q 017187 28 FPGHMAAATRAIK-HRLKISDLVIEVRDSRIPLSSAHP--GLQP-Q---LSAKRRVIALNKKDLANPNI----------- 89 (375)
Q Consensus 28 fpgHm~k~~~~i~-~~l~~~DlVI~VvDar~p~s~~~~--~l~~-~---~~~kp~IiVlNK~DL~~~~~----------- 89 (375)
.+|+..- +.++ ..+.++|++|+|.|...+.+-.+- .+.. . ..+.|+++|.||+||.+...
T Consensus 58 t~G~e~~--~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 58 TAGQEEY--DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred CCCchhh--hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 5777432 2333 357899999999999876443221 1111 1 35689999999999964321
Q ss_pred ---HHHHHHHHhhCC-CcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 90 ---LNKWVRHFDSCK-QDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 90 ---~~~~~~~~~~~g-~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.++..++.++.+ ..++.+||+++.|++++++.+.+.+.
T Consensus 136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 136 PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 011111222334 46889999999999999998876553
No 428
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.39 E-value=0.00094 Score=66.86 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=74.5
Q ss_pred CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh---hhHHHHHHHH
Q 017187 23 GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP---NILNKWVRHF 97 (375)
Q Consensus 23 ~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~---~~~~~~~~~~ 97 (375)
.+|-.-|||...+- +.++.++.+|-|++++||...+..+-..+... ..+-+.|+|+||+|-.+. +.+.+..+.|
T Consensus 70 INIvDTPGHADFGG-EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf 148 (603)
T COG1217 70 INIVDTPGHADFGG-EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLF 148 (603)
T ss_pred EEEecCCCcCCccc-hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 34556899966554 47788999999999999987544443333332 456778999999998642 3344444555
Q ss_pred h-------hCCCcEEEEecCCc----------cCHHHHHHHHHHHHhhh
Q 017187 98 D-------SCKQDYIAINAHSR----------SSVQKLLELVELKLKEV 129 (375)
Q Consensus 98 ~-------~~g~~vi~iSa~~~----------~gvk~Ll~~L~~~l~~~ 129 (375)
- ++..++++.|+.+| .++..|.+.|.++++..
T Consensus 149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 2 34568889998775 35788899999888765
No 429
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.38 E-value=0.00044 Score=59.52 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.++||||||++.+.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~ 21 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN 21 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 430
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.38 E-value=0.0003 Score=66.12 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||+|.+.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~ 22 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG 22 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999985
No 431
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.38 E-value=0.00042 Score=65.89 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.+|+|||||+|+|+.
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999985
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.36 E-value=0.00055 Score=62.47 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|||||||++.+..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~ 31 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLT 31 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999986653
No 433
>PRK12739 elongation factor G; Reviewed
Probab=97.36 E-value=0.0016 Score=70.17 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=54.9
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK 81 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK 81 (375)
.||+++..........+ +-.-|||.. -...+...+..+|++|+|+|+..+.......+.+. ..++|.|+++||
T Consensus 56 ~rgiti~~~~~~~~~~~~~i~liDTPG~~~-f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK 134 (691)
T PRK12739 56 ERGITITSAATTCFWKGHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNK 134 (691)
T ss_pred hcCCCccceeEEEEECCEEEEEEcCCCHHH-HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 56665554443332222 335699975 44468889999999999999988765544444443 457899999999
Q ss_pred CCCCCh
Q 017187 82 KDLANP 87 (375)
Q Consensus 82 ~DL~~~ 87 (375)
+|+...
T Consensus 135 ~D~~~~ 140 (691)
T PRK12739 135 MDRIGA 140 (691)
T ss_pred CCCCCC
Confidence 999854
No 434
>PRK00007 elongation factor G; Reviewed
Probab=97.35 E-value=0.00032 Score=75.42 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh-hhccccccccccc----c---cccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTK----R---ATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~----~---~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~ 205 (375)
-.+|+++|.+|+|||||+|+|+. .|.+.. .|+.. . ...-...|+|.+.....+ ..+..+.++||||...
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHK--IGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 45899999999999999999974 221110 00000 0 000125678877653222 2344689999999754
No 435
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.35 E-value=0.00044 Score=62.94 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||++.+..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~ 22 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD 22 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 436
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.34 E-value=0.00061 Score=60.58 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~ 100 (375)
..+..+|++|+|+|...+.+-.+. . +.+.....|+++|.||+||.+. -..++..++-++.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 357899999999999776543321 1 1111356899999999999531 0112222333344
Q ss_pred CC-cEEEEecCCccC-HHHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRSS-VQKLLELVEL 124 (375)
Q Consensus 101 g~-~vi~iSa~~~~g-vk~Ll~~L~~ 124 (375)
+. .++.+||+++.+ ++++...+.+
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 54 678999999985 9998887765
No 437
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.33 E-value=0.001 Score=61.51 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=54.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEE-EEEEcCCCCChhh-HHH----HHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRV-IALNKKDLANPNI-LNK----WVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~I-iVlNK~DL~~~~~-~~~----~~~~~ 97 (375)
-..||++ ..+.+.++.+|+|++|+|++.+.......+... ..++|.+ +|+||+|+.++.. .++ ..+.+
T Consensus 88 vDtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~ 163 (225)
T cd01882 88 IECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF 163 (225)
T ss_pred EeCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH
Confidence 3578876 445566789999999999987766555444444 2457754 5999999974321 222 22212
Q ss_pred h---hCCCcEEEEecCCc
Q 017187 98 D---SCKQDYIAINAHSR 112 (375)
Q Consensus 98 ~---~~g~~vi~iSa~~~ 112 (375)
. -.+.+++++|+++.
T Consensus 164 ~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 164 WTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHhhCCCCcEEEEeeccC
Confidence 1 12458999998876
No 438
>PRK12739 elongation factor G; Reviewed
Probab=97.33 E-value=0.00032 Score=75.36 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh-hhcccccccccccccccC------------CCCCeeeeeEEEEE-ccCCcEEEEE
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTKRATVG------------PLPGVTQDIAGFKI-AHRPSIYVLD 199 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~~~~v~------------~~pg~T~~~~~~~i-~~~~~~~liD 199 (375)
.-.+|+++|.+|+|||||+|+|+. .|.+. +...+. ...|+|.+.....+ ..+..+.++|
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~-------~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liD 79 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSH-------KIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIID 79 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcc-------ccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEc
Confidence 345799999999999999999975 22211 001111 25577877653222 2344688999
Q ss_pred cCCCCC
Q 017187 200 TPGVLV 205 (375)
Q Consensus 200 TPGi~~ 205 (375)
|||...
T Consensus 80 TPG~~~ 85 (691)
T PRK12739 80 TPGHVD 85 (691)
T ss_pred CCCHHH
Confidence 999753
No 439
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.32 E-value=0.00084 Score=61.34 Aligned_cols=59 Identities=27% Similarity=0.252 Sum_probs=41.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA 85 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~ 85 (375)
-.-|||.. ....+...+..+|++|+|+|+....+.....+.+. ..++|.++|+||+|++
T Consensus 76 iDtpG~~~-f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 76 IDTPGHVN-FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EECCCCcc-hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 34699853 34556678899999999999976654432222222 3468999999999986
No 440
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.31 E-value=0.00074 Score=60.34 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~ 100 (375)
..++++|++|+|+|...+.+-.+- .+.. .....|+++|.||+||.+. -..++..++-++.
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 357899999999998776443221 1111 1346899999999999531 1112233333345
Q ss_pred CC-cEEEEecCCccC-HHHHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRSS-VQKLLELVELK 125 (375)
Q Consensus 101 g~-~vi~iSa~~~~g-vk~Ll~~L~~~ 125 (375)
+. .++.+||+++.+ ++++...+.+.
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 64 788999999998 99988876553
No 441
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.31 E-value=0.0006 Score=60.79 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+|||||||++.+..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~ 22 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE 22 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 442
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.30 E-value=0.0017 Score=61.72 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEE
Q 017187 7 IKKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALN 80 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlN 80 (375)
.+|++.+...+......+ +-..|||-.. ...++..+..+|.+|+|+|+..........+.+. ..++|+++++|
T Consensus 53 ~~rg~si~~~~~~~~~~~~~i~liDTPG~~df-~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvN 131 (267)
T cd04169 53 KQRGISVTSSVMQFEYRDCVINLLDTPGHEDF-SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFIN 131 (267)
T ss_pred HhCCCCeEEEEEEEeeCCEEEEEEECCCchHH-HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEE
Confidence 345554444433333333 2337998543 3456778899999999999986544332233333 35789999999
Q ss_pred cCCCCCh
Q 017187 81 KKDLANP 87 (375)
Q Consensus 81 K~DL~~~ 87 (375)
|+|+...
T Consensus 132 K~D~~~a 138 (267)
T cd04169 132 KLDREGR 138 (267)
T ss_pred CCccCCC
Confidence 9998654
No 443
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.30 E-value=0.00068 Score=58.95 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCC--hh-hHHHHHHHH-hhC-CCcEEEEe
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLAN--PN-ILNKWVRHF-DSC-KQDYIAIN 108 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~--~~-~~~~~~~~~-~~~-g~~vi~iS 108 (375)
...+.+|++++|.|...+.+-.+ ..+... ..+.|+++|.||+||.. +. ...+..+.+ ++. +..++.+|
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 34578999999999887644332 111222 14579999999999842 11 112222222 232 36789999
Q ss_pred cCCccCHHHHHHHHHH
Q 017187 109 AHSRSSVQKLLELVEL 124 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~ 124 (375)
|+++.|++++++.+.+
T Consensus 141 Ak~~~~i~~~f~~~~~ 156 (158)
T cd04103 141 ATYGLNVERVFQEAAQ 156 (158)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999887754
No 444
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.29 E-value=0.00065 Score=61.13 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||++.+..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999986
No 445
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.29 E-value=0.00023 Score=65.44 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=42.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh-hhcccccc----------cccc--------cccccCCCCCeeeeeEEEEE-ccCCcEE
Q 017187 137 LVMVVGVPNVGKSALINSIHQ-IALSRFPV----------QEKT--------KRATVGPLPGVTQDIAGFKI-AHRPSIY 196 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~----------~~k~--------~~~~v~~~pg~T~~~~~~~i-~~~~~~~ 196 (375)
+|+++|.+++|||||+.+|+. .|.+.... .|+. .........|+|++...+.+ ..+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 478999999999999999875 22221100 0000 01112235688988875443 2344689
Q ss_pred EEEcCCCC
Q 017187 197 VLDTPGVL 204 (375)
Q Consensus 197 liDTPGi~ 204 (375)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 446
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.26 E-value=0.0012 Score=61.62 Aligned_cols=59 Identities=24% Similarity=0.150 Sum_probs=43.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLAN 86 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~ 86 (375)
.-|||.. ....+...++.+|.+++|+|+..........+.+. ..++|+++++||+|+..
T Consensus 70 DTPG~~~-f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 70 DTPGHMD-FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred eCCCccc-hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 3599953 44567788999999999999987654332233332 35789999999999874
No 447
>PLN03126 Elongation factor Tu; Provisional
Probab=97.24 E-value=0.00079 Score=69.16 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=44.9
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhh-hcccccccccc---cccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKT---KRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~---~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~ 205 (375)
....++++++|.+|+|||||+++|+.. +.+......+. .........|+|.+.....+ ..+..+.++||||...
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 366789999999999999999999851 11110000000 00112233578877654333 2334688999999743
No 448
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.23 E-value=0.00072 Score=60.28 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+++++|.+|||||||+|.+..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999984
No 449
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.22 E-value=0.0011 Score=61.71 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 73 KRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 73 kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+|.++|+||+|+++.+..+.+. ....++++||+++.|++++.+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLA-----RQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 5889999999998766554321 123578999999999999999887765
No 450
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00071 Score=68.15 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--------------CCCCEEEEEEcCCCCChhhHHHH--HH
Q 017187 32 MAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--------------SAKRRVIALNKKDLANPNILNKW--VR 95 (375)
Q Consensus 32 m~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--------------~~kp~IiVlNK~DL~~~~~~~~~--~~ 95 (375)
-.-++++.++.+.++|+|++|+||....++.+..+.+.+ ..++.|++.||+|++++-....| +.
T Consensus 335 E~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~ 414 (531)
T KOG1191|consen 335 EALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV 414 (531)
T ss_pred HHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence 345889999999999999999999665555544433331 23789999999999976221122 22
Q ss_pred HHhhC---CCcE-EEEecCCccCHHHHHHHHHHHH
Q 017187 96 HFDSC---KQDY-IAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 96 ~~~~~---g~~v-i~iSa~~~~gvk~Ll~~L~~~l 126 (375)
|.... ..++ .++||.+++|++.|...+.+.+
T Consensus 415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 22221 2234 4589999999999888876654
No 451
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.21 E-value=0.00076 Score=60.13 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=56.2
Q ss_pred HhhhcCeEEEEEeCCCCCCCCch---hHhh---ccCCCCEEEEEEcCCCCChhh------------HHHHHHHHhhCCC-
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHP---GLQP---QLSAKRRVIALNKKDLANPNI------------LNKWVRHFDSCKQ- 102 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~---~l~~---~~~~kp~IiVlNK~DL~~~~~------------~~~~~~~~~~~g~- 102 (375)
.+..+|++++|.|...+.+..+. .+.. .....|+++|.||+|+.+... .+....+.++.+.
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 46799999999998654322110 1111 134689999999999854210 1111112223343
Q ss_pred cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 103 DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++.+||+++.|++++++.+.+.+..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 68899999999999999999876543
No 452
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.20 E-value=0.00084 Score=62.10 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=44.5
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA 85 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~ 85 (375)
-.-|||.. -...+...+..+|.+++|+|+..+.......+.+. ..++|+++|+||+|+.
T Consensus 78 iDTPG~~~-f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 78 IDSPGHVD-FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ECCCCccc-cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 35799964 45667888999999999999987665443333333 3468999999999986
No 453
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.20 E-value=0.00072 Score=68.51 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh-hhccccc----------ccccc--------cccccCCCCCeeeeeEEEEEcc-C
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ-IALSRFP----------VQEKT--------KRATVGPLPGVTQDIAGFKIAH-R 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~----------~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~ 192 (375)
...++++++|.+++|||||+++|+. .|.+... ..|+. .........|+|.+.....+.. .
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 5678999999999999999999985 1222100 00000 0001112458898887544432 2
Q ss_pred CcEEEEEcCCCC
Q 017187 193 PSIYVLDTPGVL 204 (375)
Q Consensus 193 ~~~~liDTPGi~ 204 (375)
..+.++||||..
T Consensus 85 ~~i~iiDtpGh~ 96 (426)
T TIGR00483 85 YEVTIVDCPGHR 96 (426)
T ss_pred eEEEEEECCCHH
Confidence 358899999953
No 454
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.18 E-value=0.00065 Score=71.91 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGV 203 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi 203 (375)
.|+++|.+|+|||||+|+|.+... .........|.|.+..... ..++..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~---------dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNA---------DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 588999999999999999986210 1112223357887765322 223345789999997
No 455
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.004 Score=60.32 Aligned_cols=101 Identities=27% Similarity=0.297 Sum_probs=67.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC---CCCchhHhhccCCCCEEEEEEcCCCCChhhH----HHHH----
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL---SSAHPGLQPQLSAKRRVIALNKKDLANPNIL----NKWV---- 94 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~---s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~----~~~~---- 94 (375)
-..||| +.-+|.+.....-.|+.++|+|+.... +.++-.+.+ +.-++.++|+||+|+.++... ++..
T Consensus 75 vDCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-~~c~klvvvinkid~lpE~qr~ski~k~~kk~~ 152 (522)
T KOG0461|consen 75 VDCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-LLCKKLVVVINKIDVLPENQRASKIEKSAKKVR 152 (522)
T ss_pred EeCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhh-hhccceEEEEeccccccchhhhhHHHHHHHHHH
Confidence 468999 455666666677789999999987543 333333333 334678999999999876432 2222
Q ss_pred HHHhhC----CCcEEEEecCCc----cCHHHHHHHHHHHHhh
Q 017187 95 RHFDSC----KQDYIAINAHSR----SSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~----g~~vi~iSa~~~----~gvk~Ll~~L~~~l~~ 128 (375)
+-++.. +.+++.+|+..| +.+.+|.+.+...+.+
T Consensus 153 KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 153 KTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 223222 247899999998 6778888877776644
No 456
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.15 E-value=0.00089 Score=61.91 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+|+|.+|||||||++.+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~ 23 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK 23 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999986
No 457
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.14 E-value=0.00045 Score=63.12 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|+|||||+++|..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~ 22 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIE 22 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 458
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.13 E-value=0.001 Score=60.60 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.++||||||++.+.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~ 22 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999996
No 459
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.12 E-value=0.0011 Score=58.59 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi 203 (375)
....+|+++|.+|+||||+++.|.. .....+.++-|.. ...+...+ -.+.++|.+|=
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~-----------~~~~~~~pT~g~~--~~~i~~~~-~~~~~~d~gG~ 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN-----------GEISETIPTIGFN--IEEIKYKG-YSLTIWDLGGQ 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS-----------SSEEEEEEESSEE--EEEEEETT-EEEEEEEESSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh-----------ccccccCcccccc--cceeeeCc-EEEEEEecccc
Confidence 6789999999999999999999985 1112222222222 22333332 35889999995
No 460
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.10 E-value=0.00061 Score=63.51 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE-EEEEccCCcEEEEEcCCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA-GFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~-~~~i~~~~~~~liDTPGi~~~~ 207 (375)
-++.++|+|.|||||+++.|.+ ..+.|.+.-+||-... +..-.+.+.+.+.|.|||.+-.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g------------~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiega 120 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTG------------TFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGA 120 (358)
T ss_pred eeeeEEecCccchhhhhhhhcC------------CCCccccccceeEEEecceEeccccceeeecCcchhccc
Confidence 3789999999999999999996 3355556666664332 3322455679999999998753
No 461
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.09 E-value=0.0014 Score=58.48 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|||||||++.+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~ 27 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK 27 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999986
No 462
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.09 E-value=0.00043 Score=61.89 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
-.|+++|.+|+||++|+..|.. + +...+.+|-.|..+-.. .-.....+.+||+||-.-
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~-~--------~~~~T~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~r 61 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVN-G--------KTVPTVTSMENNIAYNV---NNSKGKKLRLVDIPGHPR 61 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHH-S--------S---B---SSEEEECCG---SSTCGTCECEEEETT-HC
T ss_pred ceEEEEcCCCCCHHHHHHHHhc-C--------CcCCeeccccCCceEEe---ecCCCCEEEEEECCCcHH
Confidence 4699999999999999999996 1 11112222222111111 012334689999999754
No 463
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.08 E-value=0.0013 Score=56.57 Aligned_cols=86 Identities=19% Similarity=0.136 Sum_probs=58.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhH---hhccC-CCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGL---QPQLS-AKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~~~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
..+.++|.+|+|.|...+.+-.+ ..+ ..... ..|+++|.||+|+.+... .++..++.++.+..++.+|++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 45889999999999876432211 111 11123 578999999999986322 22333344455678899999999
Q ss_pred cCHHHHHHHHHHHH
Q 017187 113 SSVQKLLELVELKL 126 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l 126 (375)
.++.+++..+.+.+
T Consensus 147 ~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 147 ENVKEIFQELIRKI 160 (162)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888776543
No 464
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.08 E-value=0.0013 Score=58.39 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.++||||||++.+..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~ 23 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS 23 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999986
No 465
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.06 E-value=0.00086 Score=68.92 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|+|||||++.|+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~ 49 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLH 49 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHH
Confidence 5678999999999999999999875
No 466
>PRK12740 elongation factor G; Reviewed
Probab=97.06 E-value=0.0032 Score=67.47 Aligned_cols=60 Identities=23% Similarity=0.183 Sum_probs=43.1
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCC
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLAN 86 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~ 86 (375)
-.-|||.. ....+...+..+|++++|+|+..........+.+. ..++|.++|+||+|+..
T Consensus 65 iDtPG~~~-~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 65 IDTPGHVD-FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EECCCcHH-HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 45799964 33456678899999999999987654333222222 35789999999999874
No 467
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.06 E-value=0.0028 Score=57.74 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=66.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc-----hhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH-----PGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~-----~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..+..+|.+++|+|.....+-.+ ..+.+...+.|+++|.||+|+.+.....+..++.+..+..++.+|++++.|+
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 45678999999999875433211 0111123467899999999997543323334444455667889999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceEEEEEcCCC
Q 017187 116 QKLLELVELKLKEVISREPTLLVMVVGVPN 145 (375)
Q Consensus 116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pn 145 (375)
++.+.++.+.+.. ...+.++.-|=
T Consensus 157 ~~~f~~ia~~l~~------~p~~~~ldEp~ 180 (215)
T PTZ00132 157 EKPFLWLARRLTN------DPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHHhh------cccceecCCcc
Confidence 9988877665532 33577777665
No 468
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0039 Score=56.38 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=73.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hH---hhc-cCCCCEEEEEEcCCCCChhhH--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GL---QPQ-LSAKRRVIALNKKDLANPNIL--NKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l---~~~-~~~kp~IiVlNK~DL~~~~~~--~~~~~~~ 97 (375)
-|--.-+.+...-+..++..|+.|++|.|.....+.+|. ++ .+. ..+.|.++|-||+|+..+-.+ +.-.++-
T Consensus 65 iWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA 144 (207)
T KOG0078|consen 65 IWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALA 144 (207)
T ss_pred EEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHH
Confidence 687777788888888999999999999998765554431 11 111 246899999999999863222 2222333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+.|...+.+||+++.++.+..-.|...+.
T Consensus 145 ~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 145 REYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 466889999999999999887766655544
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.05 E-value=0.002 Score=63.03 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=52.7
Q ss_pred HhhhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHHHHH----HHhh-------CCCcEEEEec
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNKWVR----HFDS-------CKQDYIAINA 109 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~----~~~~-------~g~~vi~iSa 109 (375)
....+|++++|++. .+..+.+.... .....-++|+||+|+.+......... .+.- ...+++++||
T Consensus 166 i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA 242 (332)
T PRK09435 166 VAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSA 242 (332)
T ss_pred HHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEEC
Confidence 46689999998762 22222111111 11223489999999986543322222 2211 1137899999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++.|+++|.+.+.++.+.
T Consensus 243 ~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 243 LEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 470
>PRK09866 hypothetical protein; Provisional
Probab=97.04 E-value=0.0012 Score=69.05 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+.++++|.+|+|||||+|+|.+
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G 91 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVG 91 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 448999999999999999999997
No 471
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.03 E-value=0.0015 Score=60.86 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||++.+..
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~ 35 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK 35 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc
Confidence 3467899999999999999999986
No 472
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.01 E-value=0.002 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++++|.+|||||||++.+..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~ 25 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT 25 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999885
No 473
>PRK00007 elongation factor G; Reviewed
Probab=97.00 E-value=0.0024 Score=68.75 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN 88 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~ 88 (375)
.-|||..... .+...+..+|++|+|+|+..........+.+. ..++|+|+++||+|+.+..
T Consensus 81 DTPG~~~f~~-ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 81 DTPGHVDFTI-EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred eCCCcHHHHH-HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 4599975444 68889999999999999988766655555444 4578999999999998654
No 474
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0012 Score=58.86 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCC--chhHhhc--cCCCCE--EEEEEcCCCCCh--hhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187 42 RLKISDLVIEVRDSRIPLSSA--HPGLQPQ--LSAKRR--VIALNKKDLANP--NILNKWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~--~~~l~~~--~~~kp~--IiVlNK~DL~~~--~~~~~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
+.++++.+|.|.|....-+-. ...+.++ .....+ -+|.||+||... ...++...|.+..|..++.+||+++.
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGE 153 (200)
T ss_pred eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEeccccc
Confidence 467999999999987643211 1122222 122223 447799999973 23455666766778889999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 017187 114 SVQKLLELVELKLKEV 129 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~~ 129 (375)
++++|...|.+.++..
T Consensus 154 Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCS 169 (200)
T ss_pred CHHHHHHHHHHhccCc
Confidence 9999999998888764
No 475
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.94 E-value=0.001 Score=66.99 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++++|.+++|||||++.|+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~ 22 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLH 22 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHH
Confidence 4799999999999999999875
No 476
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.91 E-value=0.0084 Score=56.78 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=43.8
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
-..|||.. -...+...+..+|.+++|+|+..+.......+.+. ..++|.++|+||+|+...
T Consensus 69 iDtPG~~~-f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 69 IDTPGYAD-FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred EECcCHHH-HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 34699953 34556788999999999999987654432222222 357899999999998764
No 477
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.88 E-value=0.0042 Score=64.68 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=43.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
-.-|||.. ....+...+..+|.+|+|+|+..........+.+. ..+.|+++++||+|+...
T Consensus 84 iDTPG~~d-f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 84 LDTPGHED-FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred EECCCchh-hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 34799954 34556778999999999999986554332233332 357999999999998754
No 478
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0037 Score=53.36 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHhhhcCeEEEEEeCCC--CCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHH-----HHHhhCCCcEEEEe
Q 017187 41 HRLKISDLVIEVRDSRI--PLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWV-----RHFDSCKQDYIAIN 108 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~--p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~-----~~~~~~g~~vi~iS 108 (375)
...+++|.||+|||..+ -.+....++... +.+..+++++||.|........+.. +.++++-..++..|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 67899999999999753 222211222221 3456788889999986443322222 22333445788899
Q ss_pred cCCccCHHHHHHHHHHHHhh
Q 017187 109 AHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~~l~~ 128 (375)
|.++.|++...+|+.+-+++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred cccccCCcHHHHHHHHHHhc
Confidence 99999999999999887654
No 479
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.86 E-value=0.0025 Score=58.95 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+|+++|.++.|||||+++|+.
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~ 22 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLA 22 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 480
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.83 E-value=0.0047 Score=57.10 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch--hHh----hccCCCCEEEEEEcCCCCChhh--------------HHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP--GLQ----PQLSAKRRVIALNKKDLANPNI--------------LNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~--~l~----~~~~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~ 100 (375)
..+..+|++|+|+|...+.+-.+. .+. ....+.|+++|.||+||.+... .++-.++-++.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 357899999999999876432221 111 1135689999999999964210 01111122234
Q ss_pred CC-cEEEEecCCcc-CHHHHHHHHHHH
Q 017187 101 KQ-DYIAINAHSRS-SVQKLLELVELK 125 (375)
Q Consensus 101 g~-~vi~iSa~~~~-gvk~Ll~~L~~~ 125 (375)
+. .++.+||+++. |+++++..+...
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 53 68889999887 599988876553
No 481
>PRK13351 elongation factor G; Reviewed
Probab=96.81 E-value=0.0071 Score=65.10 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=43.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
.-|||.. ....+...++.+|.+|+|+|+..+.......+.+. ..++|+++|+||+|+...
T Consensus 79 DtPG~~d-f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 79 DTPGHID-FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ECCCcHH-HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 4699954 34556788999999999999987655433322222 357899999999998753
No 482
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.00096 Score=69.80 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=58.6
Q ss_pred hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
.+.|+|+-|+||... .+|-.+ .++ ..++|.++++|++|.+.+...+--.+.+ +..|.++++++|+++.|++++++
T Consensus 80 ~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 80 GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 467999999999743 222221 222 4689999999999998664433222222 24689999999999999999999
Q ss_pred HHHHHHh
Q 017187 121 LVELKLK 127 (375)
Q Consensus 121 ~L~~~l~ 127 (375)
.+.+...
T Consensus 158 ~i~~~~~ 164 (653)
T COG0370 158 AIIELAE 164 (653)
T ss_pred HHHHhcc
Confidence 8876544
No 483
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.78 E-value=0.0032 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.+|||||||++.+..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999998875
No 484
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.76 E-value=0.0026 Score=67.15 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh-hcccccccccccccccC------CCCCeeeeeEEEEE--c--cC--CcEEEEEcCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTKRATVG------PLPGVTQDIAGFKI--A--HR--PSIYVLDTPG 202 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~~~~v~------~~pg~T~~~~~~~i--~--~~--~~~~liDTPG 202 (375)
-+++++|.+|+|||||+++|+.. |.+... .....+. ...|.|.......+ . ++ -.+.++||||
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~----~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG 79 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISER----EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 79 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccc----cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCC
Confidence 37999999999999999999862 222110 0011111 22477766543222 1 11 2478999999
Q ss_pred CCCC
Q 017187 203 VLVP 206 (375)
Q Consensus 203 i~~~ 206 (375)
....
T Consensus 80 ~~dF 83 (595)
T TIGR01393 80 HVDF 83 (595)
T ss_pred cHHH
Confidence 9753
No 485
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=96.75 E-value=0.0045 Score=53.77 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE----EEEEccCC-cEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA----GFKIAHRP-SIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~----~~~i~~~~-~~~liDTPGi~~ 205 (375)
..++++++|-+|||||||+-.... .+..+...+|..+. .+.+.+.. .+.++||.|-.-
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~--------------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVS--------------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHh--------------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 357899999999999999988775 11222222333332 23333322 478899999643
No 486
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.74 E-value=0.0039 Score=67.11 Aligned_cols=61 Identities=23% Similarity=0.229 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN 88 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~ 88 (375)
.-|||... ...+...+..+|++|+|+|+..........+.+. ..++|+++|+||+|+....
T Consensus 81 DTPG~~~~-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 81 DTPGHVDF-TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred ECCCCcch-hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 46899643 3467788999999999999987665544344333 3578999999999998643
No 487
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.73 E-value=0.0027 Score=59.08 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE--ccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI--AHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i--~~~~~~~liDTPGi~~~ 206 (375)
+|+++|.+++||||..+.++.- -....+. .-|.|.++....+ .+.-.+.++|+||-...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~----------~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~ 61 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK----------YSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF 61 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-------------GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCST
T ss_pred CEEEEcCCCCChhhHHHHHHcC----------CCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCcccc
Confidence 5899999999999999999961 1111221 2245666554333 33336889999998654
No 488
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.73 E-value=0.0031 Score=57.23 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
++++++|..++|||||+.+|.++
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999763
No 489
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.0067 Score=54.37 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=60.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cC--CCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCcEEEEec
Q 017187 39 IKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LS--AKRRVIALNKKDLANPNILN--KWVRHFDSCKQDYIAINA 109 (375)
Q Consensus 39 i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~--~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~vi~iSa 109 (375)
+-.++++++++|.|.|...-.+-++ .++.+. .. +.-+++|.||.||+++.... +-...-++.+..++.+|+
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsa 167 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSA 167 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecc
Confidence 3456889999999999875443322 344444 12 23456677999999875432 111222345667888999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+.+++++...+...+++
T Consensus 168 k~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPG 186 (221)
T ss_pred cCCCCHHHHHHHHHHhccC
Confidence 9999999998887766654
No 490
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.68 E-value=0.0036 Score=60.25 Aligned_cols=105 Identities=22% Similarity=0.218 Sum_probs=73.6
Q ss_pred eEEeeCCCcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhcc-----CCCC----EEEEEEcCCCC
Q 017187 16 MGFTKGGGNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQL-----SAKR----RVIALNKKDLA 85 (375)
Q Consensus 16 ~~~~~~~~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~~-----~~kp----~IiVlNK~DL~ 85 (375)
.++.+.-+=++.+|.|..++++.+.+-+..+|++++|+|...|....... +...+ ...| .|=|-||+|..
T Consensus 228 vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 228 VLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred EEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 34455556689999999999999999999999999999999886543211 11111 1112 45677888876
Q ss_pred ChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 86 NPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..... .....+.+||.+|.|++++++.+......
T Consensus 308 ~~~~e~--------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 308 EDEVEE--------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCcc--------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 532211 11226789999999999999998877654
No 491
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.68 E-value=0.0071 Score=63.00 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=50.6
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK 81 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK 81 (375)
.||+.+...+....... +-.-|||. .-...++..+..+|++|+|+|+..........+.+. ..++|+++++||
T Consensus 63 ~rgisi~~~~~~~~~~~~~inliDTPG~~-df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNK 141 (527)
T TIGR00503 63 QRGISITTSVMQFPYRDCLVNLLDTPGHE-DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNK 141 (527)
T ss_pred hcCCcEEEEEEEEeeCCeEEEEEECCChh-hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEC
Confidence 45554443333333322 33479993 444567788999999999999976543322233332 357899999999
Q ss_pred CCCCC
Q 017187 82 KDLAN 86 (375)
Q Consensus 82 ~DL~~ 86 (375)
+|+..
T Consensus 142 iD~~~ 146 (527)
T TIGR00503 142 LDRDI 146 (527)
T ss_pred ccccC
Confidence 99963
No 492
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.67 E-value=0.0026 Score=61.30 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=70.6
Q ss_pred hcccccceEEeeCCCcccccchhHHHHH-------HHHHHHhh-hcCeEEEEEeCCCC----CCCCchhHhhc--cCCCC
Q 017187 9 KGLGLGEMGFTKGGGNINWFPGHMAAAT-------RAIKHRLK-ISDLVIEVRDSRIP----LSSAHPGLQPQ--LSAKR 74 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~~~~wfpgHm~k~~-------~~i~~~l~-~~DlVI~VvDar~p----~s~~~~~l~~~--~~~kp 74 (375)
|+|-+|+.-.....-.+-.=||=..+-+ ++.--+++ -.++|++++|++.- +..+...+.+. .-..|
T Consensus 203 K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p 282 (346)
T COG1084 203 KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP 282 (346)
T ss_pred cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC
Confidence 5665665554444444444566544322 22222333 35799999998742 11122233333 23489
Q ss_pred EEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187 75 RVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 75 ~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+++|+||+|+.+.+..++...++...+. ..+.+++..+.+.+.+...+...
T Consensus 283 ~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 283 IVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred eEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 9999999999988877776666644443 46677887787887777666554
No 493
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.01 Score=62.55 Aligned_cols=99 Identities=23% Similarity=0.189 Sum_probs=61.4
Q ss_pred cccchhHHHHHHHHHHH-hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC------Chhh-------
Q 017187 26 NWFPGHMAAATRAIKHR-LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA------NPNI------- 89 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~-l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~------~~~~------- 89 (375)
-.-|||-. +..++.+ ...||++|+|+|.-..+...-..-.++ ....|+|+.+||+|-+ +...
T Consensus 545 IdtpghEs--FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 545 IDTPGHES--FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred ecCCCchh--hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 45678843 3334443 578999999999876544332222222 3568999999999954 1110
Q ss_pred ------------HHHHHHHHhhCCC---------------cEEEEecCCccCHHHHHHHHHHHH
Q 017187 90 ------------LNKWVRHFDSCKQ---------------DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 90 ------------~~~~~~~~~~~g~---------------~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+..++..|.+.|. .++++||.+|.|+.+|+-+|.+..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1112222222321 467899999999999998876554
No 494
>PLN00023 GTP-binding protein; Provisional
Probab=96.65 E-value=0.0046 Score=60.23 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||++.+.+
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~ 43 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVK 43 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Confidence 4568999999999999999999986
No 495
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.65 E-value=0.0066 Score=55.24 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 72 AKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 72 ~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.++.++|+||+|+.+.. ...+..+.+++ ...+++.+|++++.|++++++++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45779999999998642 23344444432 23679999999999999999998764
No 496
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.65 E-value=0.0064 Score=55.21 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=48.6
Q ss_pred cCeEEEEEeCCCCCCCCchhHhhccCCCCE--EEEEEcCCCCCh--hhH---HHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187 46 SDLVIEVRDSRIPLSSAHPGLQPQLSAKRR--VIALNKKDLANP--NIL---NKWVRHFDSCKQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 46 ~DlVI~VvDar~p~s~~~~~l~~~~~~kp~--IiVlNK~DL~~~--~~~---~~~~~~~~~~g~~vi~iSa~~~~gvk~L 118 (375)
+|.+|.|+|+....... ......... ++|+||+|+.+. ... .++.+.+ +.+.+++.+|++++.|++++
T Consensus 113 ~~~~i~vvD~~~~~~~~----~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIP----RKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKM-RGEKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred hCcEEEEEEcchhhhhh----hhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHh-CCCCCEEEEECCCCCCHHHH
Confidence 46677888875422211 011112223 899999999852 222 2333333 34568999999999999999
Q ss_pred HHHHHHHH
Q 017187 119 LELVELKL 126 (375)
Q Consensus 119 l~~L~~~l 126 (375)
.+++.+.+
T Consensus 188 ~~~i~~~~ 195 (199)
T TIGR00101 188 IDWIEHYA 195 (199)
T ss_pred HHHHHhhc
Confidence 99998654
No 497
>PRK10218 GTP-binding protein; Provisional
Probab=96.61 E-value=0.0051 Score=65.04 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhh-hccccccccccc---ccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEKTK---RATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k~~---~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~~ 206 (375)
.+|+++|.+++|||||+++|+.. |........... ........|+|.......+ ..+..+.++||||....
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence 47999999999999999999862 221100000000 0011123466665543222 22335889999998653
No 498
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.011 Score=52.89 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhHH--HHHHHHhhCCCc-
Q 017187 33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNILN--KWVRHFDSCKQD- 103 (375)
Q Consensus 33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~~--~~~~~~~~~g~~- 103 (375)
.+-...+..+.++|+-||+|.|...--+-.+ ..+.+. ..+.|.++|.||||+.+..... ....+-.+.+.+
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPI 148 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence 3444556678899999999999875322211 222222 3457999999999997653321 222333355666
Q ss_pred EEEEecCCccCHHHHHHHHHHHHhh
Q 017187 104 YIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 104 vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+||++..++++.+..+...+..
T Consensus 149 f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 149 FLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred eeecccCCccCHHHHHHHHHHHHHH
Confidence 7889999999999988877666554
No 499
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.59 E-value=0.0035 Score=56.91 Aligned_cols=63 Identities=25% Similarity=0.129 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHHHhhhc-CeEEEEEeCCCCCCCCc---hhHhhc-------cCCCCEEEEEEcCCCCChhh
Q 017187 26 NWFPGHMAAATRAIKHRLKIS-DLVIEVRDSRIPLSSAH---PGLQPQ-------LSAKRRVIALNKKDLANPNI 89 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~-DlVI~VvDar~p~s~~~---~~l~~~-------~~~kp~IiVlNK~DL~~~~~ 89 (375)
-.+|||.. ....+...++.+ +.||+|+|+........ ..+..+ ..+.|+++|.||+|+.....
T Consensus 53 ~D~pG~~~-~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 53 VDVPGHPK-LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred EECCCCHH-HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 35899964 345556778888 99999999976532111 112111 14789999999999875433
No 500
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.59 E-value=0.011 Score=51.57 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=64.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHH------H
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNK------W 93 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~------~ 93 (375)
|=-|-.....+--+.+.+++|.+|+|+|..++..-+. ..+.+. ..+.|++++.||.|+.+.-..+. .
T Consensus 65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L 144 (185)
T KOG0073|consen 65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL 144 (185)
T ss_pred EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCH
Confidence 4444433333333467899999999999976543221 112222 46799999999999974322222 2
Q ss_pred HHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 94 VRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 94 ~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+.++....+++.+|+.+++++.+=+.|+...+.
T Consensus 145 ~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 145 EELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred HHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 2222445568889999999888777777765543
Done!