Query 017187
Match_columns 375
No_of_seqs 360 out of 3149
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2.3E-52 8E-57 397.7 26.2 271 25-368 3-280 (282)
2 3cnl_A YLQF, putative uncharac 100.0 1E-46 3.5E-51 355.2 8.7 247 26-369 2-249 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 4.1E-23 1.4E-27 203.2 15.9 157 36-207 61-226 (369)
4 3h2y_A GTPase family protein; 99.9 1.4E-22 4.8E-27 199.3 14.4 157 36-207 59-225 (368)
5 1mky_A Probable GTP-binding pr 99.8 1.1E-19 3.8E-24 182.5 14.0 157 36-205 72-240 (439)
6 1t9h_A YLOQ, probable GTPase E 99.8 6.7E-21 2.3E-25 182.5 4.7 143 41-209 82-240 (307)
7 2hjg_A GTP-binding protein ENG 99.8 5.2E-20 1.8E-24 184.8 8.8 160 34-207 71-237 (436)
8 2rcn_A Probable GTPase ENGC; Y 99.8 1.5E-18 5.2E-23 169.3 12.8 146 39-209 124-284 (358)
9 2yv5_A YJEQ protein; hydrolase 99.8 2.6E-18 9E-23 164.4 11.8 148 41-208 75-231 (302)
10 4dcu_A GTP-binding protein ENG 99.8 1.8E-18 6.3E-23 174.5 10.9 159 33-206 90-256 (456)
11 1u0l_A Probable GTPase ENGC; p 99.7 3E-17 1E-21 157.0 10.1 149 41-209 80-237 (301)
12 2e87_A Hypothetical protein PH 99.4 1.4E-14 4.6E-19 141.6 -3.8 153 47-211 59-232 (357)
13 4a9a_A Ribosome-interacting GT 99.1 1.9E-10 6.7E-15 112.7 8.2 59 135-206 72-132 (376)
14 1wf3_A GTP-binding protein; GT 98.9 1.6E-09 5.5E-14 103.2 7.3 62 135-207 7-69 (301)
15 3lxw_A GTPase IMAP family memb 98.9 2E-09 6.9E-14 99.4 7.1 64 133-207 19-84 (247)
16 3iev_A GTP-binding protein ERA 98.9 3E-09 1E-13 101.5 7.2 64 133-207 8-73 (308)
17 3iby_A Ferrous iron transport 98.8 4.8E-09 1.6E-13 97.6 7.8 60 137-208 3-63 (256)
18 3i8s_A Ferrous iron transport 98.8 3.8E-09 1.3E-13 99.1 7.2 61 135-207 3-64 (274)
19 1h65_A Chloroplast outer envel 98.8 1E-08 3.4E-13 95.8 9.7 64 133-207 37-101 (270)
20 1x3s_A RAS-related protein RAB 98.8 6.6E-09 2.3E-13 90.7 7.9 117 27-150 70-194 (195)
21 2gj8_A MNME, tRNA modification 98.8 6E-09 2E-13 90.3 7.3 61 134-206 3-65 (172)
22 3b1v_A Ferrous iron uptake tra 98.8 1E-08 3.5E-13 96.3 9.3 62 135-208 3-64 (272)
23 1mky_A Probable GTP-binding pr 98.8 2.9E-09 9.9E-14 106.5 5.9 58 137-205 3-61 (439)
24 3gee_A MNME, tRNA modification 98.8 2.1E-09 7.3E-14 108.7 4.9 63 133-207 231-295 (476)
25 3lxx_A GTPase IMAP family memb 98.8 8.5E-09 2.9E-13 94.2 8.2 67 133-211 27-96 (239)
26 1xzp_A Probable tRNA modificat 98.8 3.1E-09 1E-13 107.7 5.2 61 134-206 242-305 (482)
27 1svi_A GTP-binding protein YSX 98.8 1.1E-08 3.8E-13 89.4 8.1 65 133-209 21-85 (195)
28 3a1s_A Iron(II) transport prot 98.8 9.3E-09 3.2E-13 95.7 7.9 66 134-211 4-70 (258)
29 4dhe_A Probable GTP-binding pr 98.8 7.9E-09 2.7E-13 92.6 6.9 68 133-210 27-96 (223)
30 3def_A T7I23.11 protein; chlor 98.8 2.1E-08 7E-13 93.3 9.8 65 133-208 34-99 (262)
31 3pqc_A Probable GTP-binding pr 98.8 2.3E-08 7.9E-13 87.1 9.0 62 133-207 21-82 (195)
32 1f5n_A Interferon-induced guan 98.7 8.1E-09 2.8E-13 106.7 6.5 63 133-208 36-106 (592)
33 2cxx_A Probable GTP-binding pr 98.7 2.3E-08 7.8E-13 86.9 8.2 60 136-210 2-61 (190)
34 3geh_A MNME, tRNA modification 98.7 5E-09 1.7E-13 105.6 4.1 62 133-206 222-285 (462)
35 1ega_A Protein (GTP-binding pr 98.7 8.7E-09 3E-13 98.0 5.6 59 135-204 8-67 (301)
36 3k53_A Ferrous iron transport 98.7 2.6E-08 8.9E-13 93.0 8.4 65 135-211 3-68 (271)
37 2wji_A Ferrous iron transport 98.7 3.4E-08 1.2E-12 84.6 8.2 60 135-207 3-64 (165)
38 3t5d_A Septin-7; GTP-binding p 98.7 1.8E-08 6.3E-13 94.2 6.3 70 133-206 6-78 (274)
39 2xtp_A GTPase IMAP family memb 98.7 2.6E-08 8.8E-13 92.1 7.1 67 133-210 20-88 (260)
40 2hjg_A GTP-binding protein ENG 98.7 9E-09 3.1E-13 102.9 4.3 59 136-205 4-63 (436)
41 4dhe_A Probable GTP-binding pr 98.7 8.2E-08 2.8E-12 85.9 10.1 86 43-128 113-211 (223)
42 3sjy_A Translation initiation 98.6 6.1E-08 2.1E-12 95.8 8.6 117 25-142 79-207 (403)
43 2wjg_A FEOB, ferrous iron tran 98.6 1E-07 3.4E-12 82.8 8.8 62 134-207 6-68 (188)
44 3cb4_D GTP-binding protein LEP 98.6 3.1E-08 1.1E-12 102.7 6.5 132 25-157 75-215 (599)
45 2aka_B Dynamin-1; fusion prote 98.6 8.7E-08 3E-12 90.0 8.9 41 117-157 6-48 (299)
46 2nzj_A GTP-binding protein REM 98.6 4.2E-08 1.4E-12 83.8 6.2 62 133-205 2-64 (175)
47 1jal_A YCHF protein; nucleotid 98.6 2.7E-08 9.4E-13 97.0 5.4 59 135-205 2-78 (363)
48 1jwy_B Dynamin A GTPase domain 98.6 1.1E-07 3.7E-12 90.2 9.3 41 117-157 5-46 (315)
49 1wxq_A GTP-binding protein; st 98.6 2.4E-08 8E-13 98.8 4.4 58 136-205 1-83 (397)
50 2dyk_A GTP-binding protein; GT 98.6 5.3E-08 1.8E-12 82.0 6.0 60 136-206 2-62 (161)
51 2qu8_A Putative nucleolar GTP- 98.6 7.5E-08 2.6E-12 87.1 6.5 62 133-206 27-89 (228)
52 1z0j_A RAB-22, RAS-related pro 98.5 1.1E-07 3.6E-12 80.8 6.9 61 134-204 5-66 (170)
53 1pui_A ENGB, probable GTP-bind 98.5 4.5E-08 1.5E-12 86.8 4.7 62 133-206 24-85 (210)
54 3q72_A GTP-binding protein RAD 98.5 4.8E-08 1.7E-12 82.8 4.7 59 135-205 2-61 (166)
55 1svi_A GTP-binding protein YSX 98.5 3.5E-07 1.2E-11 79.8 10.1 88 40-127 97-194 (195)
56 3t5g_A GTP-binding protein RHE 98.5 4.4E-08 1.5E-12 84.5 4.1 99 41-150 73-180 (181)
57 2x2e_A Dynamin-1; nitration, h 98.5 1.3E-07 4.6E-12 91.7 7.8 43 115-157 9-53 (353)
58 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 8.2E-08 2.8E-12 94.6 5.9 63 133-206 18-98 (392)
59 2ged_A SR-beta, signal recogni 98.5 1.2E-07 4.2E-12 82.7 6.2 81 111-206 22-104 (193)
60 3iev_A GTP-binding protein ERA 98.5 6.1E-07 2.1E-11 85.5 11.5 92 37-128 84-182 (308)
61 2ohf_A Protein OLA1, GTP-bindi 98.5 7.6E-08 2.6E-12 94.8 5.2 62 133-206 20-99 (396)
62 3pqc_A Probable GTP-binding pr 98.5 5.2E-07 1.8E-11 78.3 10.0 86 43-128 102-194 (195)
63 2qtf_A Protein HFLX, GTP-bindi 98.5 1.5E-07 5.3E-12 91.9 6.9 56 137-205 181-238 (364)
64 1ek0_A Protein (GTP-binding pr 98.5 2.2E-07 7.5E-12 78.7 6.9 60 135-204 3-63 (170)
65 1r8s_A ADP-ribosylation factor 98.5 1.6E-07 5.6E-12 79.3 6.0 101 26-127 49-161 (164)
66 1xzp_A Probable tRNA modificat 98.5 3.8E-07 1.3E-11 92.3 9.2 90 36-126 314-403 (482)
67 2fg5_A RAB-22B, RAS-related pr 98.5 2.6E-07 9E-12 80.9 7.0 62 133-204 21-83 (192)
68 2g6b_A RAS-related protein RAB 98.4 3.3E-07 1.1E-11 78.7 7.4 62 133-205 8-72 (180)
69 3t1o_A Gliding protein MGLA; G 98.4 3.2E-07 1.1E-11 79.7 7.4 101 27-128 80-192 (198)
70 1g16_A RAS-related protein SEC 98.4 2.5E-07 8.6E-12 78.4 6.5 60 134-205 2-64 (170)
71 1r2q_A RAS-related protein RAB 98.4 2.7E-07 9.1E-12 78.1 6.5 62 133-204 4-66 (170)
72 3tw8_B RAS-related protein RAB 98.4 2.7E-07 9.4E-12 79.0 6.6 61 133-205 7-70 (181)
73 1ksh_A ARF-like protein 2; sma 98.4 1.9E-07 6.4E-12 81.0 5.6 102 26-128 67-180 (186)
74 3r7w_A Gtpase1, GTP-binding pr 98.4 2.3E-07 7.9E-12 88.3 6.3 60 134-204 2-63 (307)
75 1z08_A RAS-related protein RAB 98.4 4.4E-07 1.5E-11 77.0 7.3 25 133-157 4-28 (170)
76 2dyk_A GTP-binding protein; GT 98.4 2.8E-07 9.5E-12 77.5 6.0 87 37-126 71-160 (161)
77 2f7s_A C25KG, RAS-related prot 98.4 6.3E-07 2.2E-11 79.8 8.6 102 26-128 89-199 (217)
78 1u8z_A RAS-related protein RAL 98.4 2.7E-07 9.2E-12 77.8 5.9 101 26-127 57-166 (168)
79 2lkc_A Translation initiation 98.4 1.5E-07 5.2E-12 80.7 4.4 60 133-205 6-67 (178)
80 1wb1_A Translation elongation 98.4 6.1E-07 2.1E-11 90.8 9.5 112 15-127 65-188 (482)
81 1zj6_A ADP-ribosylation factor 98.4 2.2E-07 7.4E-12 80.9 5.3 102 26-128 65-178 (187)
82 2y8e_A RAB-protein 6, GH09086P 98.4 5.3E-07 1.8E-11 77.1 7.7 59 134-204 13-74 (179)
83 1wms_A RAB-9, RAB9, RAS-relate 98.4 4.6E-07 1.6E-11 77.5 7.3 62 133-204 5-67 (177)
84 1z2a_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 76.9 6.9 25 133-157 3-27 (168)
85 1kk1_A EIF2gamma; initiation o 98.4 5.1E-07 1.7E-11 89.4 8.5 103 25-128 87-200 (410)
86 2j69_A Bacterial dynamin-like 98.4 3.6E-07 1.2E-11 96.5 7.5 37 133-180 67-103 (695)
87 1upt_A ARL1, ADP-ribosylation 98.4 4.8E-07 1.6E-11 76.8 6.9 58 133-204 5-62 (171)
88 3bc1_A RAS-related protein RAB 98.4 3.1E-07 1.1E-11 79.5 5.8 102 26-128 75-185 (195)
89 3tkl_A RAS-related protein RAB 98.4 6.4E-07 2.2E-11 78.0 7.7 61 133-205 14-77 (196)
90 2a9k_A RAS-related protein RAL 98.4 3.1E-07 1.1E-11 79.1 5.6 102 26-128 71-181 (187)
91 3cph_A RAS-related protein SEC 98.4 5.1E-07 1.7E-11 79.9 7.1 61 133-205 18-81 (213)
92 2g6b_A RAS-related protein RAB 98.4 2.7E-07 9.3E-12 79.2 5.1 101 27-128 66-174 (180)
93 1kao_A RAP2A; GTP-binding prot 98.4 6.5E-07 2.2E-11 75.3 7.4 23 135-157 3-25 (167)
94 2bme_A RAB4A, RAS-related prot 98.4 6.7E-07 2.3E-11 77.2 7.6 60 133-204 8-70 (186)
95 1s0u_A EIF-2-gamma, translatio 98.4 5.1E-07 1.7E-11 89.4 7.6 114 26-140 86-211 (408)
96 2h57_A ADP-ribosylation factor 98.4 4E-07 1.4E-11 79.4 6.1 89 40-128 85-187 (190)
97 3j2k_7 ERF3, eukaryotic polype 98.4 2E-06 7E-11 85.9 12.0 111 9-120 79-217 (439)
98 2b6h_A ADP-ribosylation factor 98.4 3.1E-07 1E-11 80.7 5.3 101 26-127 78-190 (192)
99 1zd9_A ADP-ribosylation factor 98.4 4.6E-07 1.6E-11 79.0 6.4 101 26-127 72-184 (188)
100 1z0f_A RAB14, member RAS oncog 98.4 4E-07 1.4E-11 77.8 5.7 99 27-126 70-176 (179)
101 1vg8_A RAS-related protein RAB 98.4 8.1E-07 2.8E-11 78.2 7.9 61 133-205 6-69 (207)
102 3clv_A RAB5 protein, putative; 98.4 7.8E-07 2.7E-11 77.4 7.7 25 133-157 5-29 (208)
103 1lnz_A SPO0B-associated GTP-bi 98.4 1E-07 3.5E-12 92.4 2.1 57 137-205 160-218 (342)
104 4bas_A ADP-ribosylation factor 98.4 5.5E-07 1.9E-11 78.7 6.6 101 27-128 69-189 (199)
105 2oil_A CATX-8, RAS-related pro 98.3 7.3E-07 2.5E-11 77.8 7.4 62 133-205 23-86 (193)
106 1ksh_A ARF-like protein 2; sma 98.3 7.6E-07 2.6E-11 77.1 7.4 58 133-204 16-73 (186)
107 1z0f_A RAB14, member RAS oncog 98.3 6.7E-07 2.3E-11 76.4 6.9 62 133-204 13-75 (179)
108 1wf3_A GTP-binding protein; GT 98.3 9.3E-07 3.2E-11 84.0 8.5 91 37-128 78-173 (301)
109 1m2o_B GTP-binding protein SAR 98.3 7.3E-07 2.5E-11 78.1 7.2 59 133-205 21-79 (190)
110 1upt_A ARL1, ADP-ribosylation 98.3 5.9E-07 2E-11 76.3 6.4 101 27-128 57-169 (171)
111 1x3s_A RAS-related protein RAB 98.3 8.5E-07 2.9E-11 77.1 7.3 62 134-205 14-76 (195)
112 3gj0_A GTP-binding nuclear pro 98.3 4.3E-07 1.5E-11 81.3 5.4 63 133-205 13-76 (221)
113 2dby_A GTP-binding protein; GD 98.3 3E-07 1E-11 89.9 4.7 59 136-206 2-82 (368)
114 4dcu_A GTP-binding protein ENG 98.3 8.9E-07 3.1E-11 88.8 8.2 94 35-128 267-369 (456)
115 2gf9_A RAS-related protein RAB 98.3 9.8E-07 3.4E-11 76.8 7.4 63 133-205 20-83 (189)
116 1u8z_A RAS-related protein RAL 98.3 1.2E-06 4.2E-11 73.6 7.8 24 134-157 3-26 (168)
117 2www_A Methylmalonic aciduria 98.3 3.8E-07 1.3E-11 88.5 5.1 24 134-157 73-96 (349)
118 3kkq_A RAS-related protein M-R 98.3 1.4E-06 4.8E-11 75.1 8.2 100 27-127 72-181 (183)
119 4dsu_A GTPase KRAS, isoform 2B 98.3 9.1E-07 3.1E-11 76.3 7.0 59 134-205 3-64 (189)
120 2p5s_A RAS and EF-hand domain 98.3 6.7E-07 2.3E-11 78.7 6.2 62 133-204 26-88 (199)
121 1z06_A RAS-related protein RAB 98.3 1.1E-06 3.9E-11 76.4 7.5 62 133-204 18-80 (189)
122 1zbd_A Rabphilin-3A; G protein 98.3 1.2E-06 4.1E-11 77.0 7.6 61 134-204 7-68 (203)
123 2h17_A ADP-ribosylation factor 98.3 6.4E-07 2.2E-11 77.5 5.7 59 133-205 19-77 (181)
124 1moz_A ARL1, ADP-ribosylation 98.3 9E-07 3.1E-11 76.2 6.6 59 133-205 16-74 (183)
125 1zj6_A ADP-ribosylation factor 98.3 1.4E-06 4.8E-11 75.6 7.9 59 133-205 14-72 (187)
126 2qpt_A EH domain-containing pr 98.3 5.1E-07 1.7E-11 92.8 5.8 39 134-183 64-104 (550)
127 2x77_A ADP-ribosylation factor 98.3 7.8E-07 2.7E-11 77.3 6.1 88 41-128 85-184 (189)
128 1kao_A RAP2A; GTP-binding prot 98.3 5E-07 1.7E-11 76.0 4.7 100 27-127 57-165 (167)
129 2il1_A RAB12; G-protein, GDP, 98.3 8.4E-07 2.9E-11 77.7 6.3 100 27-127 81-189 (192)
130 2hup_A RAS-related protein RAB 98.3 1.1E-06 3.8E-11 77.6 7.2 102 26-128 83-193 (201)
131 2efe_B Small GTP-binding prote 98.3 1E-06 3.5E-11 75.6 6.7 61 133-204 10-72 (181)
132 3cph_A RAS-related protein SEC 98.3 1E-06 3.6E-11 77.8 6.9 103 26-129 74-183 (213)
133 1c1y_A RAS-related protein RAP 98.3 1.4E-06 4.9E-11 73.4 7.5 23 135-157 3-25 (167)
134 2bcg_Y Protein YP2, GTP-bindin 98.3 1.2E-06 4E-11 77.4 7.0 61 133-205 6-69 (206)
135 2fn4_A P23, RAS-related protei 98.3 1.6E-06 5.6E-11 74.1 7.6 60 133-205 7-69 (181)
136 2erx_A GTP-binding protein DI- 98.3 1.2E-06 4.2E-11 74.1 6.7 24 134-157 2-25 (172)
137 1fzq_A ADP-ribosylation factor 98.3 8.7E-07 3E-11 77.0 5.8 100 27-127 66-177 (181)
138 1fzq_A ADP-ribosylation factor 98.3 5.7E-07 1.9E-11 78.1 4.6 58 133-204 14-71 (181)
139 3clv_A RAB5 protein, putative; 98.3 1.7E-06 5.9E-11 75.1 7.6 101 27-128 99-204 (208)
140 2bov_A RAla, RAS-related prote 98.3 1.1E-06 3.8E-11 77.1 6.4 102 26-128 67-177 (206)
141 3t5g_A GTP-binding protein RHE 98.3 1.3E-06 4.4E-11 75.2 6.6 62 134-206 5-67 (181)
142 2bov_A RAla, RAS-related prote 98.3 1.8E-06 6.2E-11 75.8 7.7 25 133-157 12-36 (206)
143 1moz_A ARL1, ADP-ribosylation 98.3 1E-06 3.5E-11 75.9 6.0 102 26-128 67-180 (183)
144 1ky3_A GTP-binding protein YPT 98.3 1.1E-06 3.6E-11 75.4 6.0 25 133-157 6-30 (182)
145 2h17_A ADP-ribosylation factor 98.2 6.9E-07 2.4E-11 77.3 4.7 85 40-124 83-179 (181)
146 2ce2_X GTPase HRAS; signaling 98.2 1.9E-06 6.6E-11 72.2 7.3 23 135-157 3-25 (166)
147 2ew1_A RAS-related protein RAB 98.2 1.7E-06 5.9E-11 76.8 7.4 59 133-203 24-85 (201)
148 4dsu_A GTPase KRAS, isoform 2B 98.2 1E-06 3.4E-11 76.1 5.6 101 27-128 58-166 (189)
149 2il1_A RAB12; G-protein, GDP, 98.2 1.1E-06 3.8E-11 76.9 5.9 62 133-204 24-86 (192)
150 2o52_A RAS-related protein RAB 98.2 9.8E-07 3.3E-11 77.9 5.5 60 133-204 23-85 (200)
151 2a9k_A RAS-related protein RAL 98.2 2.1E-06 7E-11 73.8 7.5 25 133-157 16-40 (187)
152 3bc1_A RAS-related protein RAB 98.2 2.1E-06 7.2E-11 74.2 7.5 25 133-157 9-33 (195)
153 2fh5_B SR-beta, signal recogni 98.2 1.6E-06 5.4E-11 77.0 6.8 59 133-204 5-65 (214)
154 1r2q_A RAS-related protein RAB 98.2 6.4E-07 2.2E-11 75.7 4.1 99 27-126 61-167 (170)
155 3gee_A MNME, tRNA modification 98.2 1.1E-06 3.8E-11 88.7 6.5 89 37-127 304-397 (476)
156 3q85_A GTP-binding protein REM 98.2 2.3E-06 7.8E-11 72.5 7.5 102 27-128 57-167 (169)
157 1r8s_A ADP-ribosylation factor 98.2 1.6E-06 5.6E-11 73.1 6.6 55 136-204 1-55 (164)
158 3tkl_A RAS-related protein RAB 98.2 2.2E-06 7.6E-11 74.5 7.6 101 27-128 71-179 (196)
159 1g16_A RAS-related protein SEC 98.2 1.3E-06 4.5E-11 73.9 6.0 101 27-128 58-165 (170)
160 2y8e_A RAB-protein 6, GH09086P 98.2 1.1E-06 3.8E-11 75.0 5.5 100 27-127 69-176 (179)
161 2hxs_A RAB-26, RAS-related pro 98.2 1.3E-06 4.4E-11 74.8 5.8 25 133-157 4-28 (178)
162 2gj8_A MNME, tRNA modification 98.2 6.7E-07 2.3E-11 77.2 4.0 88 35-127 73-165 (172)
163 1zun_B Sulfate adenylate trans 98.2 1.3E-06 4.6E-11 87.0 6.8 108 9-117 88-213 (434)
164 2efe_B Small GTP-binding prote 98.2 1.3E-06 4.5E-11 74.9 5.8 101 27-128 67-175 (181)
165 1c1y_A RAS-related protein RAP 98.2 2.5E-06 8.5E-11 71.9 7.4 87 40-126 69-165 (167)
166 4bas_A ADP-ribosylation factor 98.2 1.6E-06 5.4E-11 75.7 6.4 59 133-205 15-75 (199)
167 3qq5_A Small GTP-binding prote 98.2 3.7E-07 1.3E-11 90.9 2.4 64 133-207 32-97 (423)
168 1zd9_A ADP-ribosylation factor 98.2 2.1E-06 7.2E-11 74.8 7.0 59 133-204 20-78 (188)
169 2erx_A GTP-binding protein DI- 98.2 7.8E-07 2.7E-11 75.3 4.1 100 27-127 57-166 (172)
170 3kkq_A RAS-related protein M-R 98.2 3E-06 1E-10 73.0 7.8 25 133-157 16-40 (183)
171 2a5j_A RAS-related protein RAB 98.2 1.6E-06 5.4E-11 75.7 6.1 62 133-205 19-82 (191)
172 2iwr_A Centaurin gamma 1; ANK 98.2 1.6E-06 5.3E-11 74.4 5.9 61 133-205 5-66 (178)
173 1zbd_A Rabphilin-3A; G protein 98.2 1.2E-06 4.2E-11 77.0 5.4 101 27-128 63-171 (203)
174 2gf0_A GTP-binding protein DI- 98.2 1.3E-06 4.6E-11 76.1 5.6 102 26-128 61-171 (199)
175 3oes_A GTPase rhebl1; small GT 98.2 2.6E-06 8.7E-11 75.1 7.4 25 133-157 22-46 (201)
176 3q85_A GTP-binding protein REM 98.2 1.8E-06 6.1E-11 73.2 6.1 22 136-157 3-24 (169)
177 1f6b_A SAR1; gtpases, N-termin 98.2 1.6E-06 5.5E-11 76.5 6.0 59 133-205 23-81 (198)
178 2lkc_A Translation initiation 98.2 3.3E-06 1.1E-10 72.1 7.9 87 41-128 74-171 (178)
179 2gf0_A GTP-binding protein DI- 98.2 2.2E-06 7.4E-11 74.8 6.8 25 133-157 6-30 (199)
180 2nzj_A GTP-binding protein REM 98.2 1.8E-06 6.2E-11 73.5 6.1 103 26-128 57-169 (175)
181 3q72_A GTP-binding protein RAD 98.2 2.5E-06 8.4E-11 72.1 6.8 101 27-128 55-164 (166)
182 2x77_A ADP-ribosylation factor 98.2 1E-06 3.4E-11 76.6 4.5 59 133-205 20-78 (189)
183 3dz8_A RAS-related protein RAB 98.2 2.5E-06 8.7E-11 74.4 7.1 101 27-128 78-186 (191)
184 2yc2_C IFT27, small RAB-relate 98.2 9.3E-07 3.2E-11 77.6 4.2 102 26-128 78-192 (208)
185 2h57_A ADP-ribosylation factor 98.2 2E-06 7E-11 74.8 6.4 61 133-205 19-79 (190)
186 3con_A GTPase NRAS; structural 98.2 3E-06 1E-10 73.6 7.4 25 133-157 19-43 (190)
187 2bme_A RAB4A, RAS-related prot 98.2 1.3E-06 4.3E-11 75.5 4.9 101 27-128 65-173 (186)
188 4djt_A GTP-binding nuclear pro 98.2 9.8E-07 3.3E-11 78.6 4.3 64 133-206 9-74 (218)
189 3dz8_A RAS-related protein RAB 98.2 8.2E-07 2.8E-11 77.5 3.7 61 133-203 21-82 (191)
190 1z06_A RAS-related protein RAB 98.2 1.8E-06 6.2E-11 75.1 5.8 101 26-126 74-186 (189)
191 1z0j_A RAB-22, RAS-related pro 98.2 1.8E-06 6.2E-11 73.0 5.7 100 27-127 61-168 (170)
192 3con_A GTPase NRAS; structural 98.2 2.3E-06 7.9E-11 74.3 6.5 102 26-128 74-183 (190)
193 2fu5_C RAS-related protein RAB 98.2 6.2E-07 2.1E-11 77.3 2.8 60 134-205 7-69 (183)
194 4gzl_A RAS-related C3 botulinu 98.2 4.1E-06 1.4E-10 74.2 8.1 25 133-157 28-52 (204)
195 2ce2_X GTPase HRAS; signaling 98.2 4.1E-06 1.4E-10 70.1 7.7 100 27-127 57-164 (166)
196 1ky3_A GTP-binding protein YPT 98.2 2.7E-06 9.2E-11 72.7 6.7 102 26-128 63-178 (182)
197 2atv_A RERG, RAS-like estrogen 98.2 3.7E-06 1.2E-10 73.6 7.7 25 133-157 26-50 (196)
198 2hxs_A RAB-26, RAS-related pro 98.2 2.3E-06 7.8E-11 73.2 6.2 102 26-128 61-173 (178)
199 2j1l_A RHO-related GTP-binding 98.2 2.5E-06 8.5E-11 76.1 6.7 102 26-128 87-209 (214)
200 2c78_A Elongation factor TU-A; 98.2 2.8E-06 9.4E-11 83.9 7.6 120 8-128 58-212 (405)
201 1z2a_A RAS-related protein RAB 98.2 2E-06 6.9E-11 72.6 5.7 100 27-127 60-166 (168)
202 2a5j_A RAS-related protein RAB 98.2 2.9E-06 9.8E-11 74.0 6.8 101 27-128 76-184 (191)
203 2qu8_A Putative nucleolar GTP- 98.2 5.5E-06 1.9E-10 74.6 8.8 89 40-128 103-205 (228)
204 3reg_A RHO-like small GTPase; 98.2 3.6E-06 1.2E-10 73.5 7.4 25 133-157 21-45 (194)
205 2atv_A RERG, RAS-like estrogen 98.2 1.8E-06 6.1E-11 75.7 5.4 101 26-128 81-191 (196)
206 2p5s_A RAS and EF-hand domain 98.1 1.5E-06 5.1E-11 76.5 4.8 101 26-127 82-196 (199)
207 2atx_A Small GTP binding prote 98.1 3E-06 1E-10 73.9 6.8 99 27-126 72-191 (194)
208 2q3h_A RAS homolog gene family 98.1 2.9E-06 9.9E-11 74.4 6.7 60 133-205 18-80 (201)
209 3geh_A MNME, tRNA modification 98.1 8.3E-07 2.8E-11 89.3 3.5 90 37-128 295-384 (462)
210 2gf9_A RAS-related protein RAB 98.1 2.1E-06 7.3E-11 74.6 5.7 89 40-128 89-185 (189)
211 4djt_A GTP-binding nuclear pro 98.1 3E-06 1E-10 75.4 6.8 101 27-128 67-175 (218)
212 3tw8_B RAS-related protein RAB 98.1 2.6E-06 8.7E-11 72.8 6.1 101 27-128 64-171 (181)
213 2ywe_A GTP-binding protein LEP 98.1 4.7E-06 1.6E-10 86.3 9.2 103 25-129 77-185 (600)
214 2oil_A CATX-8, RAS-related pro 98.1 2.9E-06 9.9E-11 73.9 6.5 100 28-128 81-188 (193)
215 3cpj_B GTP-binding protein YPT 98.1 2.6E-06 8.8E-11 76.5 6.3 62 133-205 11-74 (223)
216 2fn4_A P23, RAS-related protei 98.1 3E-06 1E-10 72.4 6.5 101 27-128 63-172 (181)
217 2fg5_A RAB-22B, RAS-related pr 98.1 2.3E-06 7.9E-11 74.8 5.7 101 27-128 78-186 (192)
218 1nrj_B SR-beta, signal recogni 98.1 2.3E-06 7.7E-11 76.2 5.5 58 133-205 10-67 (218)
219 3bwd_D RAC-like GTP-binding pr 98.1 2E-06 6.7E-11 73.9 4.8 99 27-126 62-179 (182)
220 2fu5_C RAS-related protein RAB 98.1 2.6E-06 8.9E-11 73.4 5.6 102 26-128 62-171 (183)
221 3gj0_A GTP-binding nuclear pro 98.1 9.5E-07 3.2E-11 79.1 2.8 101 27-128 70-175 (221)
222 2bcg_Y Protein YP2, GTP-bindin 98.1 3.9E-06 1.3E-10 74.0 6.7 101 27-128 63-171 (206)
223 1ek0_A Protein (GTP-binding pr 98.1 1.3E-06 4.5E-11 73.8 3.5 99 27-126 58-167 (170)
224 3cbq_A GTP-binding protein REM 98.1 2E-06 6.9E-11 75.8 4.8 61 133-205 21-84 (195)
225 2hup_A RAS-related protein RAB 98.1 3.4E-06 1.2E-10 74.5 6.3 25 133-157 27-51 (201)
226 2e87_A Hypothetical protein PH 98.1 2E-05 6.7E-10 76.4 12.2 87 42-128 243-336 (357)
227 2gco_A H9, RHO-related GTP-bin 98.1 3.5E-06 1.2E-10 74.2 6.3 25 133-157 23-47 (201)
228 2o52_A RAS-related protein RAB 98.1 3.4E-06 1.2E-10 74.4 6.2 102 26-128 79-188 (200)
229 3zvr_A Dynamin-1; hydrolase, D 98.1 4.8E-06 1.6E-10 88.2 8.2 51 107-157 18-73 (772)
230 1z08_A RAS-related protein RAB 98.1 2.6E-06 8.9E-11 72.1 5.1 100 27-127 61-168 (170)
231 1f6b_A SAR1; gtpases, N-termin 98.1 2.9E-06 9.8E-11 74.9 5.6 98 27-125 75-196 (198)
232 1d2e_A Elongation factor TU (E 98.1 4.6E-06 1.6E-10 82.2 7.6 103 25-128 70-195 (397)
233 2fh5_B SR-beta, signal recogni 98.1 3.3E-06 1.1E-10 74.9 5.9 101 25-125 58-213 (214)
234 1m2o_B GTP-binding protein SAR 98.1 2.4E-06 8.1E-11 74.8 4.9 97 27-124 73-188 (190)
235 2wji_A Ferrous iron transport 98.1 1.8E-06 6.1E-11 73.7 3.9 79 44-126 80-163 (165)
236 1wms_A RAB-9, RAB9, RAS-relate 98.1 4.3E-06 1.5E-10 71.4 6.2 100 27-127 62-173 (177)
237 2b6h_A ADP-ribosylation factor 98.1 2.9E-06 1E-10 74.3 5.3 25 133-157 27-51 (192)
238 2gco_A H9, RHO-related GTP-bin 98.1 4.6E-06 1.6E-10 73.4 6.6 99 27-126 79-198 (201)
239 2iwr_A Centaurin gamma 1; ANK 98.1 7.4E-06 2.5E-10 70.1 7.7 96 27-128 60-169 (178)
240 3c5h_A Glucocorticoid receptor 98.1 3.5E-06 1.2E-10 77.8 5.9 82 45-126 162-253 (255)
241 3c5c_A RAS-like protein 12; GD 98.1 5.3E-06 1.8E-10 72.3 6.8 25 133-157 19-43 (187)
242 1mh1_A RAC1; GTP-binding, GTPa 98.1 4.5E-06 1.5E-10 71.7 6.2 24 134-157 4-27 (186)
243 1m7b_A RND3/RHOE small GTP-bin 98.1 4.1E-06 1.4E-10 72.5 6.0 25 133-157 5-29 (184)
244 1ega_A Protein (GTP-binding pr 98.1 1.1E-06 3.6E-11 83.6 2.3 88 40-128 83-175 (301)
245 3reg_A RHO-like small GTPase; 98.1 3.2E-06 1.1E-10 73.8 5.2 101 27-128 77-188 (194)
246 2f7s_A C25KG, RAS-related prot 98.1 2.6E-06 8.7E-11 75.8 4.7 25 133-157 23-47 (217)
247 1lnz_A SPO0B-associated GTP-bi 98.1 1.9E-06 6.5E-11 83.4 4.1 103 25-128 210-330 (342)
248 3llu_A RAS-related GTP-binding 98.1 4.9E-06 1.7E-10 73.0 6.4 26 132-157 17-42 (196)
249 3p26_A Elongation factor 1 alp 98.1 4.6E-06 1.6E-10 84.3 6.9 92 25-117 115-227 (483)
250 3j2k_7 ERF3, eukaryotic polype 98.1 4.7E-06 1.6E-10 83.3 6.9 72 133-204 15-106 (439)
251 1mh1_A RAC1; GTP-binding, GTPa 98.1 3.1E-06 1.1E-10 72.7 4.8 101 27-128 59-180 (186)
252 2yc2_C IFT27, small RAB-relate 98.0 1.4E-06 4.9E-11 76.4 2.6 25 133-157 18-42 (208)
253 3th5_A RAS-related C3 botulinu 97.3 5.7E-07 1.9E-11 79.4 0.0 98 27-125 84-202 (204)
254 2ew1_A RAS-related protein RAB 98.0 2.4E-06 8.2E-11 75.8 4.1 101 27-128 81-189 (201)
255 2qtf_A Protein HFLX, GTP-bindi 98.0 1.2E-05 4E-10 78.5 9.3 104 25-128 237-354 (364)
256 1vg8_A RAS-related protein RAB 98.0 5.3E-06 1.8E-10 72.9 6.1 101 27-128 63-175 (207)
257 3tr5_A RF-3, peptide chain rel 98.0 7.1E-06 2.4E-10 83.9 7.7 78 9-87 66-149 (528)
258 2elf_A Protein translation elo 98.0 1.4E-05 4.6E-10 78.2 9.4 117 9-128 44-180 (370)
259 3ihw_A Centg3; RAS, centaurin, 98.0 9.5E-06 3.2E-10 70.6 7.5 26 132-157 17-42 (184)
260 2cjw_A GTP-binding protein GEM 98.0 5.2E-06 1.8E-10 72.9 5.8 25 133-157 4-28 (192)
261 2j1l_A RHO-related GTP-binding 98.0 6.8E-06 2.3E-10 73.2 6.5 25 133-157 32-56 (214)
262 2fv8_A H6, RHO-related GTP-bin 98.0 6.6E-06 2.3E-10 72.8 6.3 25 133-157 23-47 (207)
263 3l0i_B RAS-related protein RAB 98.0 4.7E-07 1.6E-11 79.7 -1.3 61 133-205 31-94 (199)
264 2q3h_A RAS homolog gene family 98.0 4.8E-06 1.7E-10 73.0 5.2 88 41-128 87-195 (201)
265 2j0v_A RAC-like GTP-binding pr 98.0 9E-06 3.1E-10 71.9 7.1 25 133-157 7-31 (212)
266 3cbq_A GTP-binding protein REM 98.0 1.6E-05 5.4E-10 69.9 8.5 88 41-128 92-188 (195)
267 3t34_A Dynamin-related protein 98.0 8.2E-06 2.8E-10 79.1 7.3 22 136-157 35-56 (360)
268 3q5d_A Atlastin-1; G protein, 98.0 2.9E-06 9.9E-11 84.8 4.0 25 134-158 66-90 (447)
269 1gwn_A RHO-related GTP-binding 98.0 1.1E-05 3.6E-10 71.8 7.2 25 133-157 26-50 (205)
270 3o47_A ADP-ribosylation factor 98.0 7.4E-06 2.5E-10 78.7 6.6 101 26-127 214-326 (329)
271 3lvq_E ARF-GAP with SH3 domain 98.0 1E-05 3.5E-10 81.8 7.8 59 133-205 320-378 (497)
272 2zej_A Dardarin, leucine-rich 98.0 6.8E-06 2.3E-10 71.3 5.6 22 136-157 3-24 (184)
273 3p32_A Probable GTPase RV1496/ 98.0 1.3E-05 4.4E-10 77.7 8.1 86 41-128 188-284 (355)
274 2j0v_A RAC-like GTP-binding pr 98.0 5E-06 1.7E-10 73.6 4.8 88 41-128 76-180 (212)
275 3a1s_A Iron(II) transport prot 98.0 4.6E-06 1.6E-10 77.3 4.6 83 44-127 82-166 (258)
276 2fv8_A H6, RHO-related GTP-bin 98.0 8E-06 2.7E-10 72.3 6.0 100 27-127 79-199 (207)
277 4gzl_A RAS-related C3 botulinu 98.0 4.6E-06 1.6E-10 73.8 4.4 98 27-125 84-202 (204)
278 3ihw_A Centg3; RAS, centaurin, 98.0 1.6E-05 5.4E-10 69.2 7.7 87 42-128 82-180 (184)
279 3izq_1 HBS1P, elongation facto 98.0 3.9E-06 1.3E-10 87.3 4.4 72 133-204 165-256 (611)
280 2f9l_A RAB11B, member RAS onco 97.9 1.4E-05 4.9E-10 70.2 7.2 62 134-205 4-66 (199)
281 2atx_A Small GTP binding prote 97.9 1.2E-05 3.9E-10 70.1 6.5 24 134-157 17-40 (194)
282 3bwd_D RAC-like GTP-binding pr 97.9 4.9E-06 1.7E-10 71.3 4.0 25 133-157 6-30 (182)
283 3avx_A Elongation factor TS, e 97.9 2.2E-05 7.6E-10 86.2 9.9 102 25-127 363-485 (1289)
284 3q3j_B RHO-related GTP-binding 97.9 5.4E-06 1.9E-10 74.1 4.4 88 41-128 94-203 (214)
285 3q3j_B RHO-related GTP-binding 97.9 1.1E-05 3.9E-10 71.9 6.4 25 133-157 25-49 (214)
286 3iby_A Ferrous iron transport 97.9 2.3E-06 7.8E-11 79.3 1.7 80 44-125 82-164 (256)
287 3p26_A Elongation factor 1 alp 97.9 6.4E-06 2.2E-10 83.2 5.2 72 133-204 31-122 (483)
288 3t1o_A Gliding protein MGLA; G 97.9 3.3E-06 1.1E-10 73.2 2.6 25 133-157 12-36 (198)
289 3cpj_B GTP-binding protein YPT 97.9 4.6E-06 1.6E-10 74.8 3.6 102 26-128 67-176 (223)
290 1oix_A RAS-related protein RAB 97.9 1.9E-05 6.5E-10 69.1 7.4 62 134-205 28-90 (191)
291 3mca_A HBS1, elongation factor 97.9 3.4E-06 1.2E-10 87.4 2.9 73 133-205 175-267 (592)
292 1udx_A The GTP-binding protein 97.9 7.6E-06 2.6E-10 81.2 5.2 58 136-205 158-217 (416)
293 3dpu_A RAB family protein; roc 97.9 9.6E-06 3.3E-10 82.9 6.0 46 112-157 13-63 (535)
294 3izy_P Translation initiation 97.9 2.2E-06 7.5E-11 87.7 1.0 60 134-205 3-64 (537)
295 3qq5_A Small GTP-binding prote 97.9 3.4E-06 1.2E-10 83.9 2.3 90 36-128 104-196 (423)
296 2g3y_A GTP-binding protein GEM 97.9 1.6E-05 5.4E-10 71.4 6.4 25 133-157 35-59 (211)
297 3llu_A RAS-related GTP-binding 97.9 2.5E-05 8.5E-10 68.4 7.3 85 40-125 90-194 (196)
298 2cxx_A Probable GTP-binding pr 97.9 0.00012 4.1E-09 62.9 11.4 85 43-128 80-184 (190)
299 1jny_A EF-1-alpha, elongation 97.9 1.7E-05 6E-10 79.0 6.7 91 25-116 88-201 (435)
300 3oes_A GTPase rhebl1; small GT 97.8 9.4E-06 3.2E-10 71.3 4.1 88 41-128 91-187 (201)
301 3k53_A Ferrous iron transport 97.8 6.1E-06 2.1E-10 76.7 2.8 81 43-128 79-166 (271)
302 3i8s_A Ferrous iron transport 97.8 2.6E-06 9.1E-11 79.6 0.3 87 35-126 75-167 (274)
303 3c5c_A RAS-like protein 12; GD 97.8 1.1E-05 3.6E-10 70.3 4.0 99 27-127 75-185 (187)
304 2qag_A Septin-2, protein NEDD5 97.8 1.2E-05 4.3E-10 78.1 4.9 25 133-157 35-59 (361)
305 3lvq_E ARF-GAP with SH3 domain 97.8 1.7E-05 5.8E-10 80.1 6.0 89 40-128 384-484 (497)
306 3o47_A ADP-ribosylation factor 97.8 1.3E-05 4.4E-10 77.0 4.7 56 134-204 164-220 (329)
307 2wjg_A FEOB, ferrous iron tran 97.8 1.1E-05 3.9E-10 69.6 3.5 81 44-128 84-169 (188)
308 1r5b_A Eukaryotic peptide chai 97.8 1.9E-05 6.4E-10 79.5 5.4 92 25-117 125-241 (467)
309 2wkq_A NPH1-1, RAS-related C3 97.8 1.9E-05 6.6E-10 74.6 5.0 99 27-126 209-328 (332)
310 2wkq_A NPH1-1, RAS-related C3 97.7 0.00012 3.9E-09 69.1 10.1 60 133-205 153-215 (332)
311 3l0i_B RAS-related protein RAB 97.7 1.7E-06 6E-11 76.0 -2.9 87 41-127 101-195 (199)
312 2c78_A Elongation factor TU-A; 97.7 2.8E-05 9.4E-10 76.7 5.2 69 133-205 9-87 (405)
313 2qm8_A GTPase/ATPase; G protei 97.7 3.3E-05 1.1E-09 74.4 5.6 25 133-157 53-77 (337)
314 3th5_A RAS-related C3 botulinu 96.9 5.3E-06 1.8E-10 73.1 0.0 25 133-157 28-52 (204)
315 4dkx_A RAS-related protein RAB 97.7 5.5E-05 1.9E-09 68.1 6.7 24 134-157 12-35 (216)
316 1zo1_I IF2, translation initia 97.7 1.1E-05 3.7E-10 81.8 2.1 61 134-206 3-64 (501)
317 1f60_A Elongation factor EEF1A 97.7 1.3E-05 4.6E-10 80.4 2.7 25 133-157 5-29 (458)
318 1m7b_A RND3/RHOE small GTP-bin 97.7 2.6E-05 8.9E-10 67.4 4.2 99 27-126 61-181 (184)
319 1d2e_A Elongation factor TU (E 97.7 4.5E-05 1.5E-09 75.0 6.4 67 134-204 2-77 (397)
320 3b1v_A Ferrous iron uptake tra 97.7 1.7E-05 5.6E-10 74.2 2.9 78 44-126 79-162 (272)
321 1gwn_A RHO-related GTP-binding 97.7 2.9E-05 9.8E-10 68.9 4.4 86 41-126 95-202 (205)
322 4dkx_A RAS-related protein RAB 97.7 6E-05 2E-09 67.9 6.5 88 40-127 80-175 (216)
323 2qag_B Septin-6, protein NEDD5 97.7 6E-05 2.1E-09 74.8 7.1 64 134-205 41-107 (427)
324 1f60_A Elongation factor EEF1A 97.7 1.4E-05 4.8E-10 80.3 2.5 107 9-116 69-200 (458)
325 3mca_A HBS1, elongation factor 97.7 2.9E-06 9.8E-11 88.0 -2.7 102 25-127 259-396 (592)
326 1udx_A The GTP-binding protein 97.6 5.6E-05 1.9E-09 75.0 6.6 88 41-128 231-325 (416)
327 1wb1_A Translation elongation 97.6 2.5E-05 8.6E-10 78.9 4.1 64 134-203 18-83 (482)
328 3izq_1 HBS1P, elongation facto 97.6 1.3E-05 4.5E-10 83.3 1.9 93 25-118 249-362 (611)
329 2p67_A LAO/AO transport system 97.6 3.9E-05 1.3E-09 74.0 4.8 26 132-157 53-78 (341)
330 1yrb_A ATP(GTP)binding protein 97.6 9.6E-05 3.3E-09 67.6 7.2 90 38-128 131-257 (262)
331 1g7s_A Translation initiation 97.6 0.00012 3.9E-09 75.9 8.4 103 25-128 74-218 (594)
332 1zun_B Sulfate adenylate trans 97.6 6.8E-05 2.3E-09 74.6 6.5 25 133-157 22-46 (434)
333 2wsm_A Hydrogenase expression/ 97.6 8.3E-05 2.8E-09 66.1 6.3 25 133-157 28-52 (221)
334 1tq4_A IIGP1, interferon-induc 97.6 0.00016 5.4E-09 71.6 8.8 66 134-206 68-133 (413)
335 1jwy_B Dynamin A GTPase domain 97.6 0.00019 6.5E-09 67.6 8.6 93 36-128 158-262 (315)
336 3sop_A Neuronal-specific septi 97.6 6.6E-05 2.2E-09 70.1 5.3 24 135-158 2-25 (270)
337 3dpu_A RAB family protein; roc 97.5 4.8E-05 1.6E-09 77.7 4.6 87 41-128 117-208 (535)
338 2g3y_A GTP-binding protein GEM 97.5 0.0001 3.4E-09 66.1 5.9 86 43-128 109-203 (211)
339 2zej_A Dardarin, leucine-rich 97.5 8E-05 2.7E-09 64.4 4.9 100 28-128 63-178 (184)
340 2elf_A Protein translation elo 97.5 5.8E-05 2E-09 73.7 4.4 49 137-205 23-72 (370)
341 3tr5_A RF-3, peptide chain rel 97.5 3.2E-05 1.1E-09 79.0 2.6 24 134-157 12-35 (528)
342 1s0u_A EIF-2-gamma, translatio 97.5 9.7E-05 3.3E-09 72.9 6.0 25 133-157 6-30 (408)
343 1kk1_A EIF2gamma; initiation o 97.5 7.2E-05 2.4E-09 73.8 5.0 25 133-157 8-32 (410)
344 1jny_A EF-1-alpha, elongation 97.5 4.5E-05 1.6E-09 75.9 3.5 73 133-205 4-96 (435)
345 3p32_A Probable GTPase RV1496/ 97.5 8.8E-05 3E-09 71.8 5.2 25 133-157 77-101 (355)
346 3t5d_A Septin-7; GTP-binding p 97.5 7.6E-05 2.6E-09 69.4 4.5 82 46-127 116-203 (274)
347 2xex_A Elongation factor G; GT 97.5 0.0001 3.5E-09 77.7 5.8 71 133-205 8-87 (693)
348 3sjy_A Translation initiation 97.4 0.00015 5.1E-09 71.4 6.3 26 132-157 5-30 (403)
349 2j69_A Bacterial dynamin-like 97.4 0.00022 7.4E-09 75.3 7.8 103 26-128 179-325 (695)
350 1ko7_A HPR kinase/phosphatase; 97.4 0.00018 6.2E-09 68.5 6.4 89 66-158 73-167 (314)
351 1pui_A ENGB, probable GTP-bind 97.4 0.00057 1.9E-08 59.9 9.2 85 44-128 107-199 (210)
352 2cjw_A GTP-binding protein GEM 97.4 0.00033 1.1E-08 61.1 7.2 86 42-127 77-171 (192)
353 2h5e_A Peptide chain release f 97.4 0.00017 5.8E-09 73.7 5.9 72 134-205 12-94 (529)
354 2p67_A LAO/AO transport system 97.4 0.00019 6.5E-09 69.1 5.9 84 42-127 166-260 (341)
355 2qnr_A Septin-2, protein NEDD5 97.4 0.00015 5.1E-09 68.7 5.0 25 133-157 16-40 (301)
356 2h5e_A Peptide chain release f 97.4 0.00024 8.3E-09 72.5 7.0 62 25-87 86-149 (529)
357 2dy1_A Elongation factor G; tr 97.4 0.0004 1.4E-08 72.9 8.7 58 27-85 80-139 (665)
358 1g7s_A Translation initiation 97.3 0.00017 5.8E-09 74.7 5.8 24 134-157 4-27 (594)
359 2www_A Methylmalonic aciduria 97.3 0.00041 1.4E-08 67.0 7.8 84 42-127 184-278 (349)
360 2qag_C Septin-7; cell cycle, c 97.3 0.00022 7.4E-09 70.7 5.9 25 133-157 29-53 (418)
361 2aka_B Dynamin-1; fusion prote 97.3 6.3E-05 2.2E-09 70.2 1.7 90 37-126 153-251 (299)
362 2xtp_A GTPase IMAP family memb 97.3 0.00011 3.9E-09 67.3 3.3 90 37-128 97-208 (260)
363 3lxx_A GTPase IMAP family memb 97.3 0.00039 1.3E-08 62.9 6.6 87 41-128 108-214 (239)
364 1dar_A EF-G, elongation factor 97.3 0.00042 1.4E-08 73.0 7.6 62 25-87 81-144 (691)
365 3r7w_A Gtpase1, GTP-binding pr 97.2 0.00046 1.6E-08 65.3 6.9 97 26-123 57-176 (307)
366 2wsm_A Hydrogenase expression/ 97.2 0.00026 8.8E-09 62.9 4.7 80 46-128 130-214 (221)
367 3vqt_A RF-3, peptide chain rel 97.2 0.00042 1.4E-08 71.1 6.7 78 8-86 83-166 (548)
368 3lxw_A GTPase IMAP family memb 97.2 0.00071 2.4E-08 61.9 7.5 87 41-128 101-208 (247)
369 1dar_A EF-G, elongation factor 97.2 0.00035 1.2E-08 73.6 6.0 70 134-205 11-89 (691)
370 1zo1_I IF2, translation initia 97.2 2.2E-05 7.4E-10 79.7 -3.3 99 25-124 55-163 (501)
371 3l82_B F-box only protein 4; T 97.1 0.0011 3.8E-08 59.6 7.9 87 41-127 121-222 (227)
372 1r5b_A Eukaryotic peptide chai 97.1 0.00016 5.5E-09 72.7 2.8 25 133-157 41-65 (467)
373 3avx_A Elongation factor TS, e 97.1 0.00037 1.3E-08 76.6 5.7 69 132-204 293-370 (1289)
374 3izy_P Translation initiation 97.1 6.9E-05 2.4E-09 76.6 -0.1 102 25-127 56-167 (537)
375 2rdo_7 EF-G, elongation factor 97.1 0.0014 4.7E-08 69.3 9.8 62 25-87 86-149 (704)
376 2xex_A Elongation factor G; GT 97.1 0.0005 1.7E-08 72.4 6.2 62 25-87 79-142 (693)
377 3r7w_B Gtpase2, GTP-binding pr 97.0 0.00057 2E-08 65.5 5.4 59 137-206 1-59 (331)
378 3zvr_A Dynamin-1; hydrolase, D 97.0 0.00089 3E-08 71.0 7.2 85 40-124 181-274 (772)
379 3j25_A Tetracycline resistance 97.0 0.00038 1.3E-08 72.6 3.7 79 7-86 49-133 (638)
380 2j37_W Signal recognition part 96.9 0.00057 1.9E-08 69.3 4.2 25 133-157 99-123 (504)
381 1nrj_B SR-beta, signal recogni 96.8 0.00026 8.8E-09 62.6 1.0 86 27-113 61-169 (218)
382 1yrb_A ATP(GTP)binding protein 96.8 0.00029 9.8E-09 64.4 1.2 25 133-157 12-36 (262)
383 2rdo_7 EF-G, elongation factor 96.8 0.0016 5.3E-08 68.8 6.7 24 134-157 9-32 (704)
384 1n0u_A EF-2, elongation factor 96.8 0.00087 3E-08 72.2 4.7 24 134-157 18-41 (842)
385 2f9l_A RAB11B, member RAS onco 96.8 0.0021 7.3E-08 55.9 6.5 88 41-128 73-168 (199)
386 2ywe_A GTP-binding protein LEP 96.8 0.00068 2.3E-08 70.1 3.7 23 135-157 6-28 (600)
387 3cb4_D GTP-binding protein LEP 96.7 0.00069 2.4E-08 70.1 3.6 67 135-205 4-83 (599)
388 3c5h_A Glucocorticoid receptor 96.7 0.00056 1.9E-08 62.8 2.5 26 132-157 16-50 (255)
389 2hf9_A Probable hydrogenase ni 96.7 0.0025 8.4E-08 56.6 6.4 56 72-127 164-223 (226)
390 2qag_A Septin-2, protein NEDD5 96.7 0.0012 4E-08 64.1 4.6 76 47-123 147-228 (361)
391 1wxq_A GTP-binding protein; st 96.6 0.00064 2.2E-08 66.9 2.2 47 72-118 214-260 (397)
392 3l2o_B F-box only protein 4; s 96.6 0.0056 1.9E-07 57.5 8.2 87 41-127 206-307 (312)
393 1cip_A Protein (guanine nucleo 96.5 0.00062 2.1E-08 65.9 1.2 88 41-128 212-344 (353)
394 4fn5_A EF-G 1, elongation fact 96.5 0.0034 1.2E-07 66.2 6.9 60 25-85 89-150 (709)
395 3ney_A 55 kDa erythrocyte memb 96.5 0.0017 5.9E-08 57.6 3.9 42 134-185 18-59 (197)
396 2hf9_A Probable hydrogenase ni 96.5 0.0035 1.2E-07 55.6 6.0 25 133-157 36-60 (226)
397 2dy1_A Elongation factor G; tr 96.4 0.0041 1.4E-07 65.1 6.7 25 133-157 7-31 (665)
398 2qm8_A GTPase/ATPase; G protei 96.4 0.0074 2.5E-07 57.9 8.0 84 42-127 165-260 (337)
399 1zcb_A G alpha I/13; GTP-bindi 96.3 0.00085 2.9E-08 65.2 1.0 88 41-128 220-353 (362)
400 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0062 2.1E-07 60.7 7.1 24 134-157 66-89 (457)
401 3c8u_A Fructokinase; YP_612366 96.2 0.005 1.7E-07 54.4 5.6 40 116-157 5-44 (208)
402 1oix_A RAS-related protein RAB 96.2 0.0068 2.3E-07 52.5 5.8 86 41-126 97-190 (191)
403 2v3c_C SRP54, signal recogniti 96.1 0.0015 5E-08 65.0 1.6 23 135-157 99-121 (432)
404 3t34_A Dynamin-related protein 95.9 0.0058 2E-07 58.8 4.8 86 37-122 164-255 (360)
405 2x2e_A Dynamin-1; nitration, h 95.9 0.0019 6.6E-08 62.2 1.1 86 39-124 160-254 (353)
406 1kgd_A CASK, peripheral plasma 95.7 0.0061 2.1E-07 52.6 3.6 23 135-157 5-27 (180)
407 3szr_A Interferon-induced GTP- 95.7 0.0078 2.7E-07 62.4 4.8 22 137-158 47-68 (608)
408 2ged_A SR-beta, signal recogni 95.7 0.0071 2.4E-07 51.9 3.8 57 41-97 114-181 (193)
409 2qpt_A EH domain-containing pr 95.6 0.011 3.8E-07 60.5 5.5 60 38-97 181-243 (550)
410 3ohm_A Guanine nucleotide-bind 95.5 0.0045 1.5E-07 59.2 2.1 116 12-128 156-318 (327)
411 4fid_A G protein alpha subunit 95.5 0.0056 1.9E-07 58.8 2.8 115 11-126 149-326 (340)
412 1lvg_A Guanylate kinase, GMP k 95.5 0.0069 2.3E-07 53.2 3.2 22 136-157 5-26 (198)
413 2xtz_A Guanine nucleotide-bind 95.5 0.0073 2.5E-07 58.4 3.5 87 41-127 202-344 (354)
414 1ye8_A Protein THEP1, hypothet 95.5 0.008 2.8E-07 52.1 3.3 21 137-157 2-22 (178)
415 1ex7_A Guanylate kinase; subst 95.4 0.0082 2.8E-07 52.7 3.3 20 138-157 4-23 (186)
416 1zp6_A Hypothetical protein AT 95.4 0.01 3.4E-07 51.1 3.8 24 134-157 8-31 (191)
417 3r7w_B Gtpase2, GTP-binding pr 95.2 0.011 3.7E-07 56.6 3.7 83 40-123 67-169 (331)
418 3tr0_A Guanylate kinase, GMP k 95.1 0.013 4.5E-07 50.9 3.7 23 135-157 7-29 (205)
419 1znw_A Guanylate kinase, GMP k 95.0 0.014 4.8E-07 51.4 3.6 25 134-158 19-43 (207)
420 2qor_A Guanylate kinase; phosp 95.0 0.012 3.9E-07 51.8 3.0 24 134-157 11-34 (204)
421 1odf_A YGR205W, hypothetical 3 94.9 0.037 1.3E-06 51.8 6.3 43 115-157 9-53 (290)
422 1s96_A Guanylate kinase, GMP k 94.9 0.016 5.3E-07 52.1 3.6 24 134-157 15-38 (219)
423 3a00_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 50.5 3.1 21 137-157 3-23 (186)
424 1rz3_A Hypothetical protein rb 94.9 0.036 1.2E-06 48.5 5.9 25 133-157 20-44 (201)
425 1azs_C GS-alpha; complex (lyas 94.9 0.02 6.8E-07 56.3 4.5 87 41-127 236-384 (402)
426 2j41_A Guanylate kinase; GMP, 94.9 0.017 5.9E-07 50.2 3.7 25 134-158 5-29 (207)
427 1z6g_A Guanylate kinase; struc 94.8 0.014 4.7E-07 52.1 3.0 24 134-157 22-45 (218)
428 3ec2_A DNA replication protein 94.8 0.027 9.2E-07 48.1 4.6 42 115-157 19-60 (180)
429 2qag_C Septin-7; cell cycle, c 94.7 0.013 4.4E-07 57.9 2.8 81 46-126 139-225 (418)
430 3tau_A Guanylate kinase, GMP k 94.7 0.019 6.6E-07 50.6 3.7 24 134-157 7-30 (208)
431 2qnr_A Septin-2, protein NEDD5 94.7 0.021 7.1E-07 53.7 3.9 57 70-127 153-213 (301)
432 3asz_A Uridine kinase; cytidin 94.7 0.021 7.3E-07 50.0 3.8 25 133-157 4-28 (211)
433 1ly1_A Polynucleotide kinase; 94.6 0.022 7.7E-07 48.1 3.7 22 136-157 3-24 (181)
434 1knq_A Gluconate kinase; ALFA/ 94.6 0.027 9.2E-07 47.8 4.1 24 134-157 7-30 (175)
435 4eun_A Thermoresistant glucoki 94.5 0.022 7.7E-07 49.7 3.6 24 134-157 28-51 (200)
436 1n0u_A EF-2, elongation factor 94.5 0.01 3.5E-07 63.8 1.4 60 25-85 102-163 (842)
437 3uie_A Adenylyl-sulfate kinase 94.5 0.027 9.3E-07 49.1 4.0 25 133-157 23-47 (200)
438 1kag_A SKI, shikimate kinase I 94.4 0.021 7.3E-07 48.2 3.1 22 136-157 5-26 (173)
439 1np6_A Molybdopterin-guanine d 94.4 0.023 7.9E-07 49.1 3.4 22 136-157 7-28 (174)
440 3lw7_A Adenylate kinase relate 94.4 0.021 7.3E-07 47.7 3.1 21 136-156 2-22 (179)
441 2rhm_A Putative kinase; P-loop 94.4 0.028 9.7E-07 48.2 3.9 24 134-157 4-27 (193)
442 2bdt_A BH3686; alpha-beta prot 94.3 0.026 8.8E-07 48.6 3.5 21 137-157 4-24 (189)
443 1qhx_A CPT, protein (chloramph 94.3 0.025 8.7E-07 47.9 3.4 22 136-157 4-25 (178)
444 3kb2_A SPBC2 prophage-derived 94.3 0.025 8.6E-07 47.4 3.4 21 137-157 3-23 (173)
445 1jbk_A CLPB protein; beta barr 94.3 0.049 1.7E-06 45.8 5.1 24 134-157 42-65 (195)
446 4gp7_A Metallophosphoesterase; 94.2 0.031 1E-06 47.7 3.5 24 134-157 8-31 (171)
447 1gvn_B Zeta; postsegregational 94.1 0.054 1.8E-06 50.5 5.5 25 133-157 31-55 (287)
448 2v9p_A Replication protein E1; 94.1 0.029 9.9E-07 53.0 3.6 26 133-158 124-149 (305)
449 3tif_A Uncharacterized ABC tra 94.1 0.029 9.9E-07 50.8 3.3 24 134-157 30-53 (235)
450 1kht_A Adenylate kinase; phosp 94.0 0.031 1.1E-06 47.7 3.4 22 136-157 4-25 (192)
451 2pcj_A ABC transporter, lipopr 94.0 0.026 8.8E-07 50.7 2.9 23 135-157 30-52 (224)
452 3cm0_A Adenylate kinase; ATP-b 94.0 0.035 1.2E-06 47.4 3.6 24 134-157 3-26 (186)
453 2eyu_A Twitching motility prot 94.0 0.036 1.2E-06 51.0 3.9 25 133-157 23-47 (261)
454 1nks_A Adenylate kinase; therm 94.0 0.033 1.1E-06 47.5 3.5 21 137-157 3-23 (194)
455 3j25_A Tetracycline resistance 93.9 0.027 9.2E-07 58.7 3.2 68 137-206 4-80 (638)
456 2cbz_A Multidrug resistance-as 93.9 0.033 1.1E-06 50.5 3.3 24 134-157 30-53 (237)
457 2jaq_A Deoxyguanosine kinase; 93.8 0.036 1.2E-06 47.9 3.3 21 137-157 2-22 (205)
458 2f1r_A Molybdopterin-guanine d 93.8 0.019 6.7E-07 49.4 1.6 21 137-157 4-24 (171)
459 2plr_A DTMP kinase, probable t 93.8 0.043 1.5E-06 47.6 3.8 23 135-157 4-26 (213)
460 1mv5_A LMRA, multidrug resista 93.8 0.038 1.3E-06 50.2 3.6 24 134-157 27-50 (243)
461 2bbw_A Adenylate kinase 4, AK4 93.8 0.037 1.3E-06 49.9 3.5 22 135-156 27-48 (246)
462 2onk_A Molybdate/tungstate ABC 93.8 0.036 1.2E-06 50.4 3.4 22 136-157 25-46 (240)
463 3vaa_A Shikimate kinase, SK; s 93.7 0.04 1.4E-06 48.0 3.6 23 135-157 25-47 (199)
464 3aez_A Pantothenate kinase; tr 93.7 0.043 1.5E-06 51.9 3.9 26 132-157 87-112 (312)
465 2p5t_B PEZT; postsegregational 93.7 0.053 1.8E-06 49.3 4.4 25 133-157 30-54 (253)
466 3t61_A Gluconokinase; PSI-biol 93.6 0.037 1.3E-06 48.2 3.2 23 135-157 18-40 (202)
467 2yvu_A Probable adenylyl-sulfa 93.6 0.052 1.8E-06 46.6 4.1 25 133-157 11-35 (186)
468 2i3b_A HCR-ntpase, human cance 93.6 0.037 1.3E-06 48.4 3.1 21 137-157 3-23 (189)
469 1aky_A Adenylate kinase; ATP:A 93.6 0.043 1.5E-06 48.5 3.6 24 134-157 3-26 (220)
470 1cke_A CK, MSSA, protein (cyti 93.6 0.041 1.4E-06 48.6 3.4 22 136-157 6-27 (227)
471 1b0u_A Histidine permease; ABC 93.6 0.038 1.3E-06 50.9 3.3 24 134-157 31-54 (262)
472 2qt1_A Nicotinamide riboside k 93.6 0.05 1.7E-06 47.5 3.9 25 133-157 19-43 (207)
473 3b85_A Phosphate starvation-in 93.6 0.038 1.3E-06 49.1 3.1 22 137-158 24-45 (208)
474 2v54_A DTMP kinase, thymidylat 93.5 0.048 1.6E-06 47.2 3.7 23 135-157 4-26 (204)
475 2d2e_A SUFC protein; ABC-ATPas 93.5 0.042 1.4E-06 50.2 3.4 23 135-157 29-51 (250)
476 2if2_A Dephospho-COA kinase; a 93.5 0.042 1.4E-06 47.8 3.2 21 137-157 3-23 (204)
477 2wwf_A Thymidilate kinase, put 93.4 0.047 1.6E-06 47.6 3.5 24 134-157 9-32 (212)
478 2ff7_A Alpha-hemolysin translo 93.4 0.041 1.4E-06 50.2 3.2 23 135-157 35-57 (247)
479 1htw_A HI0065; nucleotide-bind 93.4 0.058 2E-06 45.8 3.9 25 133-157 31-55 (158)
480 3lnc_A Guanylate kinase, GMP k 93.4 0.03 1E-06 50.0 2.3 24 134-157 26-50 (231)
481 3gfo_A Cobalt import ATP-bindi 93.4 0.038 1.3E-06 51.3 3.0 23 135-157 34-56 (275)
482 1nn5_A Similar to deoxythymidy 93.4 0.049 1.7E-06 47.5 3.6 24 134-157 8-31 (215)
483 2ghi_A Transport protein; mult 93.4 0.043 1.5E-06 50.5 3.3 24 134-157 45-68 (260)
484 1sgw_A Putative ABC transporte 93.4 0.037 1.3E-06 49.5 2.8 22 136-157 36-57 (214)
485 1g6h_A High-affinity branched- 93.4 0.041 1.4E-06 50.4 3.2 24 134-157 32-55 (257)
486 4g1u_C Hemin import ATP-bindin 93.4 0.037 1.3E-06 51.1 2.9 23 135-157 37-59 (266)
487 2x8a_A Nuclear valosin-contain 93.4 0.097 3.3E-06 48.4 5.7 20 138-157 47-66 (274)
488 2zu0_C Probable ATP-dependent 93.4 0.048 1.7E-06 50.3 3.6 24 134-157 45-68 (267)
489 2olj_A Amino acid ABC transpor 93.4 0.044 1.5E-06 50.6 3.3 24 134-157 49-72 (263)
490 1tev_A UMP-CMP kinase; ploop, 93.4 0.054 1.8E-06 46.3 3.7 23 135-157 3-25 (196)
491 2cdn_A Adenylate kinase; phosp 93.3 0.055 1.9E-06 47.0 3.7 25 133-157 18-42 (201)
492 1y63_A LMAJ004144AAA protein; 93.3 0.055 1.9E-06 46.5 3.7 24 134-157 9-32 (184)
493 2ixe_A Antigen peptide transpo 93.3 0.046 1.6E-06 50.6 3.3 24 134-157 44-67 (271)
494 2pze_A Cystic fibrosis transme 93.3 0.045 1.5E-06 49.3 3.2 23 135-157 34-56 (229)
495 2pez_A Bifunctional 3'-phospho 93.3 0.06 2E-06 45.9 3.8 24 134-157 4-27 (179)
496 2p65_A Hypothetical protein PF 93.3 0.07 2.4E-06 44.8 4.2 24 134-157 42-65 (187)
497 3tqc_A Pantothenate kinase; bi 93.3 0.1 3.6E-06 49.5 5.8 26 132-157 89-114 (321)
498 1jjv_A Dephospho-COA kinase; P 93.2 0.055 1.9E-06 47.2 3.6 24 136-159 3-26 (206)
499 2c95_A Adenylate kinase 1; tra 93.2 0.057 1.9E-06 46.3 3.6 24 134-157 8-31 (196)
500 1vpl_A ABC transporter, ATP-bi 93.2 0.049 1.7E-06 50.0 3.3 24 134-157 40-63 (256)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-52 Score=397.68 Aligned_cols=271 Identities=30% Similarity=0.492 Sum_probs=216.3
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcE
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDY 104 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~v 104 (375)
|+||||||.++.+++++.++++|+|++|+|||+|.++.++.+.++..++|+++|+||+||++++..+.|.+++++.+.++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999989999888999999999999999877889999997678889
Q ss_pred EEEecCCccCHHHHHHHHHHHHhhhh-------ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC
Q 017187 105 IAINAHSRSSVQKLLELVELKLKEVI-------SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL 177 (375)
Q Consensus 105 i~iSa~~~~gvk~Ll~~L~~~l~~~~-------~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~ 177 (375)
+++|+.++.|+++|++.+.+.+.+.. .....++++++|.||||||||||+|.+ .+.+.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~-----------~~~~~~~~~ 151 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK-----------KNIAKTGDR 151 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----------SCCC-----
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc-----------CceeecCCC
Confidence 99999999999999998887765421 134678999999999999999999997 456789999
Q ss_pred CCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhccc
Q 017187 178 PGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRT 257 (375)
Q Consensus 178 pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~ 257 (375)
||+|++.+.+.+. .+++++||||+.++...+.+.+.++|++|++++..++.++++.|++++++...+ .....+
T Consensus 152 ~g~T~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~-----~~l~~~ 224 (282)
T 1puj_A 152 PGITTSQQWVKVG--KELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP-----ERLKER 224 (282)
T ss_dssp -------CCEEET--TTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCH-----HHHHHH
T ss_pred CCeeeeeEEEEeC--CCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhCh-----HHHHHH
Confidence 9999999876664 469999999999999999888999999999999999999999999999886432 111112
Q ss_pred ccccccccccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCC
Q 017187 258 EVSQSETENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIP 337 (375)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (375)
|++ | ....+..+|++.+|+++|++.|+| .|
T Consensus 225 y~~----------------------~---------------------------~~~~~~~~~l~~~a~~~g~~~kgg-~~ 254 (282)
T 1puj_A 225 YGL----------------------D---------------------------EIPEDIAELFDAIGEKRGCLMSGG-LI 254 (282)
T ss_dssp TTC----------------------S---------------------------SCCSSHHHHHHHHHHHHTCBCSTT-CB
T ss_pred cCC----------------------C---------------------------CCCCCHHHHHHHHHHHhCCcccCC-cc
Confidence 222 0 001356789999999999999975 57
Q ss_pred CcchHHHHHHHHHHHHHhhCCCCCCeecccC
Q 017187 338 HKASEARLMVSKKFLTLFRTGKLGPFILDDV 368 (375)
Q Consensus 338 ~~~~~~~~~aa~~~l~~~r~G~lg~~~ld~~ 368 (375)
| +++||+.||+|||+||||+||||.+
T Consensus 255 d-----~~~aa~~~l~d~~~Gklg~~~l~~~ 280 (282)
T 1puj_A 255 N-----YDKTTEVIIRDIRTEKFGRLSFEQP 280 (282)
T ss_dssp C-----HHHHHHHHHHHHHTTTTCSCCSCCC
T ss_pred c-----HHHHHHHHHHHHHcCCCCceECCCC
Confidence 6 8999999999999999999999974
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=1e-46 Score=355.17 Aligned_cols=247 Identities=28% Similarity=0.429 Sum_probs=185.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEE
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYI 105 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi 105 (375)
+||||||.++++++++.++++|+||+|+|||+|.++.++.+. +. ++|+++|+||+||++++..+.|.+++++.+.++
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 799999999999999999999999999999999999988877 66 899999999999999877889999997778888
Q ss_pred EEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187 106 AINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~ 185 (375)
++|++++.|+++|++.+...+ .+++++|.||||||||||+|.+ ...+.+++.||+|+..+
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~---------~~v~~vG~~~vGKSslin~l~~-----------~~~~~~~~~~g~T~~~~ 138 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL---------ARVLIVGVPNTGKSTIINKLKG-----------KRASSVGAQPGITKGIQ 138 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT---------CEEEEEESTTSSHHHHHHHHHT-----------TCC----------CCSC
T ss_pred EEECCCCcCHHHHHHHHHHhh---------hheEEeCCCCCCHHHHHHHHhc-----------ccccccCCCCCCccceE
Confidence 999999999999877764321 5899999999999999999997 34567889999999988
Q ss_pred EEEEccCCcEEEEEcCCCCCCCC-CChhHHHHHHHhhcccccccCHHHHHHHHHHHHhcCCCCchhhhhhcccccccccc
Q 017187 186 GFKIAHRPSIYVLDTPGVLVPSI-PDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRGTPLHWRHLNNRTEVSQSET 264 (375)
Q Consensus 186 ~~~i~~~~~~~liDTPGi~~~~~-~~~~~~~~lal~~~i~~~~~~~~~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 264 (375)
.+.+. ..++++||||+.++.+ .+.+.+ ++..++.+.++.+++++++.. |+.....+|.+
T Consensus 139 ~~~~~--~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~-----~~~~l~~~y~i---- 198 (262)
T 3cnl_A 139 WFSLE--NGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER-----AFEIFARSIGI---- 198 (262)
T ss_dssp EEECT--TSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH-----HHHHHHHHHTC----
T ss_pred EEEeC--CCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh-----CHHHHHHHcCc----
Confidence 76554 4699999999999988 665544 334445566666666666542 21111111111
Q ss_pred cccccccccccCCCCCCCCCCchhhHHHHHHHHHhhhhhceeeccCCCcCChhhHHHHHHHHHHHHHHhhCCCCcchHHH
Q 017187 265 ENKHEYNLKDLRPKRRKPPNASDVTYIEDLVTGVQRALHVSLSEFDGNVEDENDLESLIEQQFEVLQRALKIPHKASEAR 344 (375)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 344 (375)
. ..+ .++++.+++++|++.|+| .|| +
T Consensus 199 ---------------------------------------------~--~~d-~~~l~~ia~~~g~~~kgg-~~d-----~ 224 (262)
T 3cnl_A 199 ---------------------------------------------E--SSF-SEFFEDFARKRGLLKKGG-VPD-----I 224 (262)
T ss_dssp ---------------------------------------------C--CCH-HHHHHHHHHHTTCBCGGG-CBC-----H
T ss_pred ---------------------------------------------C--CCc-HHHHHHHHHHhCCccCCC-ccc-----H
Confidence 1 112 589999999999999875 565 8
Q ss_pred HHHHHHHHHHhhCCCCCCeecccCC
Q 017187 345 LMVSKKFLTLFRTGKLGPFILDDVP 369 (375)
Q Consensus 345 ~~aa~~~l~~~r~G~lg~~~ld~~~ 369 (375)
++||+.||++||+|+||+|+||+++
T Consensus 225 ~~aa~~~l~d~~~g~l~~~~l~~~~ 249 (262)
T 3cnl_A 225 ERALMLFFTEVAQGKAGRVSFERPE 249 (262)
T ss_dssp HHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred HHHHHHHHHHHHcCCCCceECCCCc
Confidence 9999999999999999999999864
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.90 E-value=4.1e-23 Score=203.18 Aligned_cols=157 Identities=27% Similarity=0.301 Sum_probs=124.4
Q ss_pred HHHHHH-HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHH-HhhCCC---cEEE
Q 017187 36 TRAIKH-RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRH-FDSCKQ---DYIA 106 (375)
Q Consensus 36 ~~~i~~-~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~-~~~~g~---~vi~ 106 (375)
.+++.+ ..+.+|+|++|+|+++|.++..+.+.++..++|+++|+||+||++.+ ...+|... +++.|. ++++
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 344444 44788999999999999888888888887789999999999998753 34566543 445565 6899
Q ss_pred EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187 107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~ 186 (375)
+||+++.|+++|++.+.+... ..+++++|.||||||||+|+|++... +....+.+++.||||++...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~-------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~~gtT~~~~~ 207 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE-------GGDVYVVGCTNVGKSTFINRIIEEAT------GKGNVITTSYFPGTTLDMIE 207 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT-------TSCEEEECCTTSSHHHHHHHHHHHHH------HTTCCCEEEECTTSSCEEEE
T ss_pred EECCCCCCHHHHHHHHHhhcc-------cCcEEEEcCCCCchHHHHHHHHhhcc------CCccceeecCCCCeEEeeEE
Confidence 999999999999999887653 34799999999999999999997211 11246788999999999887
Q ss_pred EEEccCCcEEEEEcCCCCCCC
Q 017187 187 FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 187 ~~i~~~~~~~liDTPGi~~~~ 207 (375)
+.+.. ++.++||||+..+.
T Consensus 208 ~~~~~--~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 208 IPLES--GATLYDTPGIINHH 226 (369)
T ss_dssp EECST--TCEEEECCSCCCCS
T ss_pred EEeCC--CeEEEeCCCcCcHH
Confidence 66553 48999999998764
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=1.4e-22 Score=199.31 Aligned_cols=157 Identities=25% Similarity=0.309 Sum_probs=118.0
Q ss_pred HHHHHH-HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh----hHHHHHHH-HhhCCC---cEEE
Q 017187 36 TRAIKH-RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN----ILNKWVRH-FDSCKQ---DYIA 106 (375)
Q Consensus 36 ~~~i~~-~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~-~~~~g~---~vi~ 106 (375)
.+++.+ ..+.+|+|++|+|+++|..+.++.+.++..++|+++|+||+||++.. ...+|... +++.+. +++.
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 344444 44566799999999998777777787777789999999999998754 34566544 345566 7899
Q ss_pred EecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccc-ccccccCCCCCeeeeeE
Q 017187 107 INAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK-TKRATVGPLPGVTQDIA 185 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k-~~~~~v~~~pg~T~~~~ 185 (375)
+||+++.|+++|++.+.+... ..+++++|.||||||||+|+|++... ++ ...+.+++.||||++..
T Consensus 139 iSA~~g~gi~~L~~~l~~~~~-------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~~~gtT~~~~ 205 (368)
T 3h2y_A 139 ISAAKGQGIAELADAIEYYRG-------GKDVYVVGCTNVGKSTFINRMIKEFS------DETENVITTSHFPGTTLDLI 205 (368)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT-------TSCEEEEEBTTSSHHHHHHHHHHHHT------TSCSSCCEEECCC----CEE
T ss_pred EeCCCCcCHHHHHhhhhhhcc-------cceEEEecCCCCChhHHHHHHHhhhc------cccccceecCCCCCeecceE
Confidence 999999999999999877542 35799999999999999999997310 00 23567899999999988
Q ss_pred EEEEccCCcEEEEEcCCCCCCC
Q 017187 186 GFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 186 ~~~i~~~~~~~liDTPGi~~~~ 207 (375)
.+.+.. +++++||||+..+.
T Consensus 206 ~~~~~~--~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 206 DIPLDE--ESSLYDTPGIINHH 225 (368)
T ss_dssp EEESSS--SCEEEECCCBCCTT
T ss_pred EEEecC--CeEEEeCCCcCcHH
Confidence 776554 48999999998764
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.1e-19 Score=182.53 Aligned_cols=157 Identities=26% Similarity=0.316 Sum_probs=112.9
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCc
Q 017187 36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSR 112 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~ 112 (375)
.++....++++|+||+|+|++.+.+..+..+.++ ..++|+++|+||+|+........+.+++ +.+. +++++||+++
T Consensus 72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 72 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCC
Confidence 3456678999999999999998877666566665 2479999999999985431111123444 4555 6899999999
Q ss_pred cCHHHHHHHHHHHHhhhh-c------cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187 113 SSVQKLLELVELKLKEVI-S------REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~-~------~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~ 185 (375)
.|+.+|++.+.+.+++.. . ....++++++|.||||||||+|+|.+ ...+.+++.||+|++..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g-----------~~~~~v~~~~gtT~d~~ 219 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRDPV 219 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC------C
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhC-----------CcccccCCCCCCcCCce
Confidence 999999999988876532 1 12458999999999999999999997 34567899999999875
Q ss_pred E--EEEccCCcEEEEEcCCCCC
Q 017187 186 G--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 186 ~--~~i~~~~~~~liDTPGi~~ 205 (375)
. +.+. +..+.++||||+..
T Consensus 220 ~~~i~~~-g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 220 DDEVFID-GRKYVFVDTAGLRR 240 (439)
T ss_dssp CEEEEET-TEEEEESSCSCC--
T ss_pred EEEEEEC-CEEEEEEECCCCcc
Confidence 3 3333 33688999999854
No 6
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=6.7e-21 Score=182.51 Aligned_cols=143 Identities=18% Similarity=0.218 Sum_probs=107.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhcc-----CCCCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQL-----SAKRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-----~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..++++|+|++|+|++.|..+.+ .+.+++ .++|+++|+||+||+++.. ++.|.++|+..|++++++|+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~ 160 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 160 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 36899999999999999988876 677763 6899999999999998744 6789999977789999999999
Q ss_pred ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC-------CCeeeee
Q 017187 112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL-------PGVTQDI 184 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~-------pg~T~~~ 184 (375)
+.|+++|++.. .+-.++++|.||||||||+|+|.+.- ...++.. .++|+..
T Consensus 161 ~~g~~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~G~I~~~~~~G~~tt~~~ 218 (307)
T 1t9h_A 161 QDSLADIIPHF-----------QDKTTVFAGQSGVGKSSLLNAISPEL-----------GLRTNEISEHLGRGKHTTRHV 218 (307)
T ss_dssp HTTCTTTGGGG-----------TTSEEEEEESHHHHHHHHHHHHCC------------------------------CCCC
T ss_pred CCCHHHHHhhc-----------CCCEEEEECCCCCCHHHHHHHhcccc-----------cccccceeeecCCCcccccHH
Confidence 88887765543 23479999999999999999998721 1122222 2456655
Q ss_pred EEEEEccCCcEEEEEcCCCCCCCCC
Q 017187 185 AGFKIAHRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 185 ~~~~i~~~~~~~liDTPGi~~~~~~ 209 (375)
+.++.. ..+++||||+..+.+.
T Consensus 219 ~~~~~~---~g~v~dtpg~~~~~l~ 240 (307)
T 1t9h_A 219 ELIHTS---GGLVADTPGFSSLEFT 240 (307)
T ss_dssp CEEEET---TEEEESSCSCSSCCCT
T ss_pred HHhhcC---CEEEecCCCccccccc
Confidence 544443 4799999999887654
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=5.2e-20 Score=184.78 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecC
Q 017187 34 AATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAH 110 (375)
Q Consensus 34 k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~ 110 (375)
+..++....++.+|++|+|+|++.+.+..+..+.++ ..++|+++|+||+|+.+... ...+++ +.+. +++++||+
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTT
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCc
Confidence 334556678999999999999998877666666554 35789999999999975421 111223 3444 68999999
Q ss_pred CccCHHHHHHHHHHHHhhhh---ccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE
Q 017187 111 SRSSVQKLLELVELKLKEVI---SREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF 187 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~~~~---~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~ 187 (375)
++.|+.+|++++.+.+++.. .....++++++|.||||||||+|+|.+ .....+++.||||++....
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~-----------~~~~~~~~~~gtT~d~~~~ 216 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAVDT 216 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEEC---------CCE
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhC-----------CCceeecCCCCceeeeeEE
Confidence 99999999999988876421 123568999999999999999999997 3446688899999987532
Q ss_pred EEc-cCCcEEEEEcCCCCCCC
Q 017187 188 KIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 188 ~i~-~~~~~~liDTPGi~~~~ 207 (375)
.+. .+..+.++||||+....
T Consensus 217 ~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 217 SFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp EEEETTEEEEETTHHHHTCBT
T ss_pred EEEECCeEEEEEECCCcCcCc
Confidence 222 23358999999997543
No 8
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.77 E-value=1.5e-18 Score=169.28 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=105.2
Q ss_pred HHHHhhhcCeEEEEEeCCCCCCCCchhHhhcc-----CCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecC
Q 017187 39 IKHRLKISDLVIEVRDSRIPLSSAHPGLQPQL-----SAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAH 110 (375)
Q Consensus 39 i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~-----~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~ 110 (375)
.+..++++|+|++| ||+.|..+.+ .+.+++ .++|+++|+||+||++++. .+.|..+|+..|++++++|+.
T Consensus 124 ~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 124 VKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 34457999999965 7788877765 566662 5789999999999998765 567999998889999999999
Q ss_pred CccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC---CC----eeee
Q 017187 111 SRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL---PG----VTQD 183 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~---pg----~T~~ 183 (375)
++.|+++|...+ .+-.++++|.||||||||+|.|.+.-. ...++.. +| +|+.
T Consensus 202 ~~~gl~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~~----------~~~~G~I~~~~G~g~~tt~~ 260 (358)
T 2rcn_A 202 TQDGLKPLEEAL-----------TGRISIFAGQSGVGKSSLLNALLGLQN----------EILTNDVSNVSGLGQHTTTA 260 (358)
T ss_dssp TTBTHHHHHHHH-----------TTSEEEEECCTTSSHHHHHHHHHCCSS----------CCCCC-------------CC
T ss_pred CCcCHHHHHHhc-----------CCCEEEEECCCCccHHHHHHHHhcccc----------ccccCCccccCCCCccceEE
Confidence 999999877643 233689999999999999999997311 0122211 12 4444
Q ss_pred eEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187 184 IAGFKIAHRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 184 ~~~~~i~~~~~~~liDTPGi~~~~~~ 209 (375)
.....+.. +..++||||+....+.
T Consensus 261 ~~i~~v~q--~~~l~dtpgv~e~~l~ 284 (358)
T 2rcn_A 261 ARLYHFPH--GGDVIDSPGVREFGLW 284 (358)
T ss_dssp CEEEECTT--SCEEEECHHHHTCCCC
T ss_pred EEEEEECC--CCEecCcccHHHhhhc
Confidence 44343443 3578999999765443
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.76 E-value=2.6e-18 Score=164.41 Aligned_cols=148 Identities=21% Similarity=0.301 Sum_probs=104.0
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
..++++|++++|+|++.|..+.+ .+.++ ..++|+++|+||+||.++.. .+.|.+++++.+++++++||+++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG 153 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36899999999999998864433 34444 26799999999999997652 56777877777889999999999
Q ss_pred cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccc-cCCCCCeeeeeEEEEEcc
Q 017187 113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRAT-VGPLPGVTQDIAGFKIAH 191 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~-v~~~pg~T~~~~~~~i~~ 191 (375)
.|+++|.+.+. +..++++|.+|||||||+|+|. .-.... +.... .+.-..+|+....+...
T Consensus 154 ~gi~~L~~~l~-----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~-----G~i~~~~~~G~~~t~~~~~~~~~- 215 (302)
T 2yv5_A 154 EGIDELVDYLE-----------GFICILAGPSGVGKSSILSRLT-GEELRT-----QEVSEKTERGRHTTTGVRLIPFG- 215 (302)
T ss_dssp TTHHHHHHHTT-----------TCEEEEECSTTSSHHHHHHHHH-SCCCCC-----SCC---------CCCCEEEEEET-
T ss_pred CCHHHHHhhcc-----------CcEEEEECCCCCCHHHHHHHHH-HhhCcc-----cccccccCCCCCceeeEEEEEcC-
Confidence 99999877653 3368999999999999999998 422110 01110 00111245554444442
Q ss_pred CCcEEEEEcCCCCCCCC
Q 017187 192 RPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 192 ~~~~~liDTPGi~~~~~ 208 (375)
...+++||||+..+.+
T Consensus 216 -~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 216 -KGSFVGDTPGFSKVEA 231 (302)
T ss_dssp -TTEEEESSCCCSSCCG
T ss_pred -CCcEEEECcCcCcCcc
Confidence 2479999999986543
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=1.8e-18 Score=174.47 Aligned_cols=159 Identities=23% Similarity=0.324 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEec
Q 017187 33 AAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINA 109 (375)
Q Consensus 33 ~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa 109 (375)
.+..+++...++.+|+||+|+|++.+++..+..+.++ ..++|+++|+||+|+.+.. ..+.+++ ..+. .++++||
T Consensus 90 ~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iSA 166 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPISG 166 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSSSEEECCT
T ss_pred HHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEeec
Confidence 3444566678899999999999998887766666665 3579999999999987532 2222333 3333 5789999
Q ss_pred CCccCHHHHHHHHHHHHhhh---hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187 110 HSRSSVQKLLELVELKLKEV---ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~~---~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~ 186 (375)
+++.|+.+|++.+...++.. .......+++++|.||||||||+|+|.+ .....+++.||+|++...
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~-----------~~~~~~~~~~gtt~~~~~ 235 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAVD 235 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECC------CTTS
T ss_pred ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhC-----------CCccccCCCCCeEEEEEE
Confidence 99999999999998776542 1234578999999999999999999997 345778899999998753
Q ss_pred --EEEccCCcEEEEEcCCCCCC
Q 017187 187 --FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 187 --~~i~~~~~~~liDTPGi~~~ 206 (375)
+... +..+.++||||+...
T Consensus 236 ~~~~~~-~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 236 TSFTYN-QQEFVIVDTAGMRKK 256 (456)
T ss_dssp EEEEET-TEEEEETTGGGTTTB
T ss_pred EEEEEC-CceEEEEECCCCCcC
Confidence 3333 236899999998764
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=3e-17 Score=156.97 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=100.7
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-----cCCCCEEEEEEcCCCCChhh---HHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-----LSAKRRVIALNKKDLANPNI---LNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-----~~~kp~IiVlNK~DL~~~~~---~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
..++++|++|+|+|++.|.++.+ .+.++ ..++|+++|+||+||.+... .++|.+.+... ..++.+||+++
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence 35889999999999998865432 33333 25789999999999987644 44566666433 67899999999
Q ss_pred cCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEcc
Q 017187 113 SSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAH 191 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~ 191 (375)
.|+++++..+. +-.++++|.||||||||+|+|.+.-.... +... ..+.-..+|+..+.+++.
T Consensus 158 ~gv~~lf~~l~-----------geiv~l~G~sG~GKSTll~~l~g~~~~~~-----G~i~~~~~~g~~~t~~~~~~~~~- 220 (301)
T 1u0l_A 158 MGIEELKEYLK-----------GKISTMAGLSGVGKSSLLNAINPGLKLRV-----SEVSEKLQRGRHTTTTAQLLKFD- 220 (301)
T ss_dssp TTHHHHHHHHS-----------SSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCCSCCEEECT-
T ss_pred cCHHHHHHHhc-----------CCeEEEECCCCCcHHHHHHHhcccccccc-----cceecccCCCCCceeeeEEEEcC-
Confidence 99999887653 23689999999999999999997311110 0000 000112245544444332
Q ss_pred CCcEEEEEcCCCCCCCCC
Q 017187 192 RPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 192 ~~~~~liDTPGi~~~~~~ 209 (375)
...+++||||+..+.+.
T Consensus 221 -~~g~v~q~p~~~~~~~~ 237 (301)
T 1u0l_A 221 -FGGYVVDTPGFANLEIN 237 (301)
T ss_dssp -TSCEEESSCSSTTCCCC
T ss_pred -CCCEEEECcCCCccCCC
Confidence 24689999999877653
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.37 E-value=1.4e-14 Score=141.58 Aligned_cols=153 Identities=20% Similarity=0.159 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCCCCchhHhhcc----CCCCEEEEEEcCCCCChhhHHHHHHHHhh-C-CCcEEEEecCCccCHHHHHH
Q 017187 47 DLVIEVRDSRIPLSSAHPGLQPQL----SAKRRVIALNKKDLANPNILNKWVRHFDS-C-KQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 47 DlVI~VvDar~p~s~~~~~l~~~~----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~-g~~vi~iSa~~~~gvk~Ll~ 120 (375)
|.+-.+++++.++.+.++.+.++. ..++.++++||+|++++...+.|.+|++. . +.....+++..+.+...+..
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 344456677777777788887774 77888899999999998888889998864 2 33222233333333444433
Q ss_pred HHHHHHhhh-------------hc-cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE
Q 017187 121 LVELKLKEV-------------IS-REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG 186 (375)
Q Consensus 121 ~L~~~l~~~-------------~~-~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~ 186 (375)
.+.....+. .. .....+++++|.||||||||+|+|.+ ....++..|++|++...
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~ 206 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTT------------AKPEIASYPFTTRGINV 206 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCS------------SCCEEECCTTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCeeeceeE
Confidence 322211110 01 24568999999999999999999996 22456778889988764
Q ss_pred EEEc-cCCcEEEEEcCCCCCCCCCCh
Q 017187 187 FKIA-HRPSIYVLDTPGVLVPSIPDI 211 (375)
Q Consensus 187 ~~i~-~~~~~~liDTPGi~~~~~~~~ 211 (375)
..+. .+..+.++||||+..+.....
T Consensus 207 ~~~~~~~~~~~l~Dt~G~~~~~~~~~ 232 (357)
T 2e87_A 207 GQFEDGYFRYQIIDTPGLLDRPISER 232 (357)
T ss_dssp EEEEETTEEEEEEECTTTSSSCSTTS
T ss_pred EEEEecCceEEEEeCCCccccchhhh
Confidence 3332 223588999999987654433
No 13
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.9e-10 Score=112.74 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
..+|++||+||||||||+|+|.+ ..+.+++.|+||++... +.+ .+.++.++||||+...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~------------~~~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTG------------TESEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHS------------BCCCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhC------------CCCcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCC
Confidence 45899999999999999999997 34778999999999873 333 3346999999999864
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.90 E-value=1.6e-09 Score=103.22 Aligned_cols=62 Identities=37% Similarity=0.552 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~~~~ 207 (375)
...|+++|.||||||||+|+|.+ .+.+.+++.|+||++... +....+.++.++||||+..+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g-----------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-----------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 45799999999999999999997 355677888999988653 222233468899999998754
No 15
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.88 E-value=2e-09 Score=99.43 Aligned_cols=64 Identities=28% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCC-CCeeeeeEEEEE-ccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPL-PGVTQDIAGFKI-AHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~-pg~T~~~~~~~i-~~~~~~~liDTPGi~~~~ 207 (375)
...++|+++|.||||||||+|+|++ .+...++.. .|+|+....... ..+..+.++||||+..+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG-----------QRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT-----------SCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC-----------CCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 5678999999999999999999997 222333322 257877754322 233468999999997653
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.85 E-value=3e-09 Score=101.55 Aligned_cols=64 Identities=36% Similarity=0.459 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-cc-CCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AH-RPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~-~~~~~liDTPGi~~~~ 207 (375)
.....|+++|.||||||||+|+|.+ .+.+.+++.|++|++...... .. +.++.++||||+..+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g-----------~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC-----------CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 4567899999999999999999997 455678899999998764222 22 4468999999998765
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.84 E-value=4.8e-09 Score=97.59 Aligned_cols=60 Identities=30% Similarity=0.462 Sum_probs=46.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~ 208 (375)
+|+++|.||||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||+.....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g------------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN------------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT------------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHC------------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 699999999999999999997 336688899999876643332 233689999999987653
No 18
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.84 E-value=3.8e-09 Score=99.14 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
.++|+++|.||||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g------------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTG------------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT------------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 57899999999999999999997 235788899999887643232 23468999999998755
No 19
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.83 E-value=1e-08 Score=95.75 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=49.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~~~ 207 (375)
...++|+++|.+|||||||+|+|++ .....+++.+|+|.....+.+.. +..+.++||||+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 4578999999999999999999997 34456777888888766544433 2358999999997654
No 20
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=6.6e-09 Score=90.70 Aligned_cols=117 Identities=17% Similarity=0.023 Sum_probs=69.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh-HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI-LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 70 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 148 (195)
T 1x3s_A 70 DTAGQER-FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR 148 (195)
T ss_dssp EECSSGG-GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH
T ss_pred eCCCchh-hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH
Confidence 4566532 11223466889999999999976533211 111222 14678999999999965432 233444444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSA 150 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSs 150 (375)
..+..++.+||+++.|++++++++.+.+.+..... --+.+|+||||
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~------~~~~~n~gkSs 194 (195)
T 1x3s_A 149 KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW------ESENQNSGPSS 194 (195)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT------CC---------
T ss_pred HcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh------cccccCCCCCC
Confidence 56778899999999999999999988776421111 12446999997
No 21
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.82 E-value=6e-09 Score=90.28 Aligned_cols=61 Identities=30% Similarity=0.505 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~ 206 (375)
.+.+|+++|.||||||||+|+|.+ .....+++.||+|++... +.+.. ..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHIDG-MPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEETT-EEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC-----------CCcceeeCCCCceeceeeEEEEECC-eEEEEEECCCcccc
Confidence 467899999999999999999997 233456788999987643 33432 35889999999753
No 22
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.81 E-value=1e-08 Score=96.29 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~ 208 (375)
.++|+++|.||||||||+|+|.+ ....++..||+|.+.....+..+..+.++||||......
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g------------~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~ 64 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG------------HNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC------------CCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCC
Confidence 46899999999999999999996 235688899999876544443344699999999986543
No 23
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.81 E-value=2.9e-09 Score=106.55 Aligned_cols=58 Identities=38% Similarity=0.488 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE-ccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI-AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i-~~~~~~~liDTPGi~~ 205 (375)
+|++||.||||||||+|.|.+ .+.+.+++.||+|++.....+ ..+..+.++||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhC-----------CCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 689999999999999999997 345678999999998763222 2234689999999875
No 24
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.81 E-value=2.1e-09 Score=108.67 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~ 207 (375)
..+++|+++|.||||||||+|+|.+ ...+.+++.||||++... +.+. +..+.++||||+..+.
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLG-----------QERAIVSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLREAG 295 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEET-TEEEEEEC--------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCcch
Confidence 3468899999999999999999997 345778899999999863 3333 2368999999997643
No 25
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.80 E-value=8.5e-09 Score=94.23 Aligned_cols=67 Identities=27% Similarity=0.374 Sum_probs=41.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCC--CeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLP--GVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~p--g~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~ 209 (375)
...++|+++|.+|||||||+|+|.+. . ...+..| ++|+......+. .+..+.++||||+......
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~-----------~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR-----------K-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS-----------C-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC-----------C-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence 46789999999999999999999971 1 2233333 677776643322 2336899999999887655
Q ss_pred Ch
Q 017187 210 DI 211 (375)
Q Consensus 210 ~~ 211 (375)
..
T Consensus 95 ~~ 96 (239)
T 3lxx_A 95 NA 96 (239)
T ss_dssp CH
T ss_pred HH
Confidence 44
No 26
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.79 E-value=3.1e-09 Score=107.66 Aligned_cols=61 Identities=38% Similarity=0.576 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCC-CC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVL-VP 206 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~-~~ 206 (375)
.+++|+++|.||||||||+|+|.+ ...+.+++.||||++... +.+. +..+.++||||+. .+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~-----------~~~a~vs~~~gTT~d~~~~~i~~~-g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVIR-GILFRIVDTAGVRSET 305 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEET-TEEEEEEESSCCCSSC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHC-----------CCCCccCCCCCeeeeeEEEEEecC-CeEEEEEECCCccccc
Confidence 358999999999999999999997 345678999999998863 4343 3468999999998 54
No 27
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.78 E-value=1.1e-08 Score=89.44 Aligned_cols=65 Identities=28% Similarity=0.373 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIP 209 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~ 209 (375)
....+|+++|.+|||||||+|+|.+. .....+++.||+|+....+.+. ..+.++||||+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR----------KNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVS 85 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------CCEEEEEET--TTEEEEECCCBCCCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC----------CCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccC
Confidence 45689999999999999999999971 1235677888999988766554 36999999998765443
No 28
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.78 E-value=9.3e-09 Score=95.70 Aligned_cols=66 Identities=29% Similarity=0.429 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCCCCCCCh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLVPSIPDI 211 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~~~~~~~ 211 (375)
..++|+++|.||||||||+|+|.+ ....++..||+|.+.....+.. +..+.++||||.........
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g------------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 70 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI 70 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH
Confidence 457899999999999999999996 2244778899998876433332 33689999999987654333
No 29
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.78 E-value=7.9e-09 Score=92.63 Aligned_cols=68 Identities=28% Similarity=0.392 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc--cCCcEEEEEcCCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA--HRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~--~~~~~~liDTPGi~~~~~~~ 210 (375)
....+|+|+|.+|||||||+|+|.+. ...+.++..||+|+....+.+. .+..+.++||||+..+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 96 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ----------KRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG 96 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC----------SSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC----------CcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh
Confidence 45679999999999999999999971 1246788899999988765554 23469999999987765443
No 30
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.77 E-value=2.1e-08 Score=93.28 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=49.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSI 208 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~ 208 (375)
...++|+++|.+|||||||+|+|++ ...+.+++.+++|.......+. .+..+.++||||+.....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG-----------EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT-----------SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 4679999999999999999999997 3445677788888876643332 233689999999976543
No 31
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.75 E-value=2.3e-08 Score=87.06 Aligned_cols=62 Identities=34% Similarity=0.440 Sum_probs=49.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~ 207 (375)
....+|+++|.+|||||||+|+|.+ .....+++.+|+|+........ ..+.++||||+....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAK 82 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHT-----------SCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHc-----------CccccccCCCCCccCeEEEEEC--CcEEEEECCCCcccc
Confidence 3457899999999999999999997 2346677888999887754443 359999999986543
No 32
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.74 E-value=8.1e-09 Score=106.68 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=42.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE----EE--E--EccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA----GF--K--IAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~----~~--~--i~~~~~~~liDTPGi~ 204 (375)
....+|+|+|.||||||||+|+|.+. ..+ + +.+|+|++.. .+ . ...+..++|+||||+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~-----------~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----------KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC-----------SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC-----------CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45678999999999999999999972 111 1 3444443332 11 1 1234569999999999
Q ss_pred CCCC
Q 017187 205 VPSI 208 (375)
Q Consensus 205 ~~~~ 208 (375)
.+..
T Consensus 103 ~~~~ 106 (592)
T 1f5n_A 103 DVEK 106 (592)
T ss_dssp CGGG
T ss_pred cccc
Confidence 7643
No 33
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.73 E-value=2.3e-08 Score=86.85 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~~~~~ 210 (375)
++|+++|.+|||||||+|+|.+ ....++..||+|.....+.+. .+.++||||+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhC------------cCCccCCCCCccceeEEEecC---CEEEEECCCccccccCC
Confidence 4799999999999999999996 235566778999887766554 69999999987654443
No 34
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.72 E-value=5e-09 Score=105.58 Aligned_cols=62 Identities=42% Similarity=0.631 Sum_probs=44.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccCCcEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~~~~~liDTPGi~~~ 206 (375)
..+++|+++|.||||||||+|+|.+ ...+.+++.||+|++.. .+.+. +.++.++||||+..+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~-g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQ-----------SDRAIVTDLPGTTRDVVESQLVVG-GIPVQVLDTAGIRET 285 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHH-----------HHBSCCSCCTTCCHHHHHHEEEET-TEEEEECC-------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhC-----------CCcccccCCCCeeEEEEEEEEEEC-CEEEEEEECCccccc
Confidence 3568899999999999999999997 34567888999999885 33343 346899999999764
No 35
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.72 E-value=8.7e-09 Score=98.03 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE-EEEccCCcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~-~~i~~~~~~~liDTPGi~ 204 (375)
...|+++|.||||||||+|+|.+ .+.+.+++.|++|++... +......++.++||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g-----------~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-----------CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 45799999999999999999997 345567888999987543 222333468899999986
No 36
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.71 E-value=2.6e-08 Score=92.99 Aligned_cols=65 Identities=32% Similarity=0.496 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCCCCCh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPSIPDI 211 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~~~~~ 211 (375)
.++|+++|.||||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||+........
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 68 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG------------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI 68 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT------------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH
Confidence 46899999999999999999997 223677889999887643332 233589999999987554443
No 37
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.70 E-value=3.4e-08 Score=84.56 Aligned_cols=60 Identities=32% Similarity=0.572 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~~~ 207 (375)
..+++++|.||||||||+|.|.+ ....++..||+|.+... +.+. +..+.++||||.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC------------CSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhC------------CCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccCC
Confidence 46899999999999999999996 22345677888876542 3332 3368899999987643
No 38
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.67 E-value=1.8e-08 Score=94.21 Aligned_cols=70 Identities=26% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC---cEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP---SIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~---~~~liDTPGi~~~ 206 (375)
...++|+++|.||||||||+|+|++....... .........|+++.+.....+.... .+.++||||+...
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccC----CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 45689999999999999999999873211100 0000000133344444333343322 5899999999653
No 39
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.67 E-value=2.6e-08 Score=92.06 Aligned_cols=67 Identities=22% Similarity=0.166 Sum_probs=46.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCC-eeeeeEEEEE-ccCCcEEEEEcCCCCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPG-VTQDIAGFKI-AHRPSIYVLDTPGVLVPSIPD 210 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg-~T~~~~~~~i-~~~~~~~liDTPGi~~~~~~~ 210 (375)
...++|+|+|.||||||||+|+|.+ .....++..|+ +|+......+ ..+..+.++||||+..+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~-----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~ 88 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR-----------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC 88 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT-----------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH
Confidence 4568999999999999999999997 22233444444 6776653222 233468999999998765444
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.67 E-value=9e-09 Score=102.89 Aligned_cols=59 Identities=34% Similarity=0.462 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
.+|+++|.||||||||+|+|.+ .+.+.+++.||+|++.....+. .+..+.++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG-----------ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE-----------EECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4799999999999999999997 3456789999999987654433 234689999999974
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.67 E-value=8.2e-08 Score=85.90 Aligned_cols=86 Identities=19% Similarity=0.081 Sum_probs=62.5
Q ss_pred hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh-------CCCcEEEEec
Q 017187 43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS-------CKQDYIAINA 109 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~-------~g~~vi~iSa 109 (375)
...+|+||+|+|++.+.+.....+.+. ..++|+++|+||+|+.+...... +.+.+.. .+.+++.+||
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA 192 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA 192 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBT
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeec
Confidence 334899999999988766544444343 35789999999999987654332 2233322 3457899999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+++.|+++++++|.+.++.
T Consensus 193 ~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHhcCc
Confidence 9999999999999888765
No 42
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.62 E-value=6.1e-08 Score=95.84 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=80.0
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC-ch-hHhh--ccCCCCEEEEEEcCCCCChhhHHHHHH----H
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA-HP-GLQP--QLSAKRRVIALNKKDLANPNILNKWVR----H 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~-~~-~l~~--~~~~kp~IiVlNK~DL~~~~~~~~~~~----~ 96 (375)
+-..||| .+..+.+...+..+|++|+|+|++.+.+.. .. .+.. ....+|+++|+||+|+++.+......+ +
T Consensus 79 iiDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 79 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EEECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 3457998 456677788899999999999999865221 11 1111 134568999999999998764433332 2
Q ss_pred HhhC---CCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEc
Q 017187 97 FDSC---KQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVG 142 (375)
Q Consensus 97 ~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG 142 (375)
+... +.+++++||+++.|+++|++.|.+.++.. .....+.+..+..
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~ 207 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIR 207 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEE
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEE
Confidence 3221 45799999999999999999998876543 2223455665554
No 43
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=1e-07 Score=82.78 Aligned_cols=62 Identities=29% Similarity=0.502 Sum_probs=45.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~~ 207 (375)
...+++++|.+|||||||+|+|.+ ....++..||+|.+.....+. .+..+.++||||.....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 457899999999999999999996 223456678888766532222 23358899999987653
No 44
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.61 E-value=3.1e-08 Score=102.69 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChh---hHHHHHHHHhh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPN---ILNKWVRHFDS 99 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~---~~~~~~~~~~~ 99 (375)
+-.-|||. .....+...+..+|.+|+|+|+..+.+..... +... ..+.|+++|+||+|+.+.. ..+++.+.+.-
T Consensus 75 liDTPGh~-dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 75 FIDTPGHV-DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI 153 (599)
T ss_dssp EEECCCCG-GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC
T ss_pred EEECCCch-HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC
Confidence 44589994 44456778899999999999998765543222 1111 4578999999999997643 22334444321
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEEEcC---CCCChHHHHHHHHh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMVVGV---PNVGKSALINSIHQ 157 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~vvG~---pnvGKSsliN~L~~ 157 (375)
...+++++||+++.|+++|++++.+.++.. .....+++.+++.. |++|+.++++-+.+
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeC
Confidence 122589999999999999999998888754 22345677777775 89999888776654
No 45
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.61 E-value=8.7e-08 Score=89.97 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 117 KLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 117 ~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++++.+.+.+...+ ......+|+|+|.||||||||+|+|.+
T Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 44445555444321 224567999999999999999999997
No 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.61 E-value=4.2e-08 Score=83.84 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=39.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~ 205 (375)
...++|+++|.||||||||+|+|.+ .....+.+.+|+|.....+.+.... .+.++||||...
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAG-----------KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC-----------C-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred ceEEEEEEECCCCccHHHHHHHHhc-----------CCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 3567999999999999999999996 2334445567777655444444321 478999999754
No 47
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=2.7e-08 Score=96.97 Aligned_cols=59 Identities=24% Similarity=0.399 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCcEE
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPSIY 196 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~~~ 196 (375)
.+++++||.||||||||+|+|.+ ..+.+++.|++|.+... +.+.. ...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~------------~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~ 69 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK------------AGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTME 69 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH------------TC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEE
Confidence 35799999999999999999997 22667888998887652 22221 12589
Q ss_pred EEEcCCCCC
Q 017187 197 VLDTPGVLV 205 (375)
Q Consensus 197 liDTPGi~~ 205 (375)
++||||+..
T Consensus 70 lvDtpGl~~ 78 (363)
T 1jal_A 70 FVDIAGLVA 78 (363)
T ss_dssp EEECCSCCT
T ss_pred EEECCCCcc
Confidence 999999975
No 48
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.60 E-value=1.1e-07 Score=90.20 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhc-cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 117 KLLELVELKLKEVIS-REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 117 ~Ll~~L~~~l~~~~~-~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+++.+++.+...+. .....+|+|+|.||||||||+|+|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHC
Confidence 445555555543322 24457899999999999999999997
No 49
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=2.4e-08 Score=98.78 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--Ec--------------------c--
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IA--------------------H-- 191 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~--------------------~-- 191 (375)
++|+++|.||||||||+|+|.+ .+ +.+++.|++|++..... +. .
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~-----------~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 68 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL-----------VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGL 68 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHC-----------CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCc
Confidence 4799999999999999999997 23 67888999998765211 10 1
Q ss_pred -CCcEEEEEcCCCCC
Q 017187 192 -RPSIYVLDTPGVLV 205 (375)
Q Consensus 192 -~~~~~liDTPGi~~ 205 (375)
.-++.++||||+..
T Consensus 69 ~~~~i~lvDtpG~~~ 83 (397)
T 1wxq_A 69 ALIPVKMVDVAGLVP 83 (397)
T ss_dssp EEEEEEEEECC----
T ss_pred ceEEEEEEECCCccc
Confidence 12488999999964
No 50
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.58 E-value=5.3e-08 Score=82.03 Aligned_cols=60 Identities=37% Similarity=0.577 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
.+++++|.+|||||||+|+|.+ .....++..|++|++.....+. .+..+.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK-----------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-----------CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhC-----------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence 4799999999999999999997 2334466778888877643332 2236889999998764
No 51
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.55 E-value=7.5e-08 Score=87.06 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
....+|+|+|.+|||||||+|+|.+ .. ..+++.+++|++....... ....+.++||||....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR-----------AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT-----------TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC-----------CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 4568999999999999999999996 12 2355678888877643222 2235889999999653
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.55 E-value=1.1e-07 Score=80.77 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
..++|+++|.+|||||||+|+|.+. .-.....+.+|++.....+.+... ..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED----------SFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS----------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC----------CCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 4689999999999999999999971 112344566777766555444322 247899999974
No 53
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.55 E-value=4.5e-08 Score=86.79 Aligned_cols=62 Identities=29% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~ 206 (375)
..+.+++++|.+|||||||+|+|.+. .....+++.+|+|+....+.+.. ++.++||||+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~----------~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ----------KSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------------CCEEEEEEET--TEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC----------CccccccCCCccceeeEEEEecC--CEEEEECcCCccc
Confidence 56789999999999999999999861 11355677889998765554543 6899999998653
No 54
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.54 E-value=4.8e-08 Score=82.84 Aligned_cols=59 Identities=25% Similarity=0.268 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
.++|+++|.||||||||+|+|.+ .....+.+.+|+|.... +.+... -.+.++||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG-----------VEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC-----------C----------CEEEEE-EEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcC-----------ccccCCCCccccceEEE-EEECCEEEEEEEEECCCCcc
Confidence 46899999999999999999986 23446667788887543 223222 2477899999754
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.53 E-value=3.5e-07 Score=79.79 Aligned_cols=88 Identities=8% Similarity=0.099 Sum_probs=63.0
Q ss_pred HHHhhhc---CeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHH----HHHHHHh-hCCCcEEEEec
Q 017187 40 KHRLKIS---DLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILN----KWVRHFD-SCKQDYIAINA 109 (375)
Q Consensus 40 ~~~l~~~---DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~-~~g~~vi~iSa 109 (375)
...+..+ |++++|+|+..+.+..+..+.++ ..+.|+++|+||+|+.+..... .+.+.+. ..+.+++.+||
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSS 176 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEc
Confidence 3444555 99999999988766544333344 3578999999999998765443 2333332 23457899999
Q ss_pred CCccCHHHHHHHHHHHHh
Q 017187 110 HSRSSVQKLLELVELKLK 127 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~ 127 (375)
+++.|++++++++.+.++
T Consensus 177 ~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 177 ETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999999877653
No 56
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.53 E-value=4.4e-08 Score=84.54 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=64.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..+..+|++++|+|+..+.+... .. +.+. ..+.|+++|+||+|+.+... .+...++.+..+.+++.+||++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence 45678999999999976432211 11 1111 23689999999999964322 2333344445677899999999
Q ss_pred ccCHHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHH
Q 017187 112 RSSVQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSA 150 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSs 150 (375)
+.|++++++.+.+.+.. .-|.+++||||
T Consensus 153 ~~~v~~l~~~l~~~~~~-----------~~~~~~~gkss 180 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEK-----------MDGACSQGKSS 180 (181)
T ss_dssp HHHHHHHHHHHHHHHHT-----------C-----CCBSC
T ss_pred CCCHHHHHHHHHHHHHH-----------hcCCcccCcCC
Confidence 99999999999887765 23678889886
No 57
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.52 E-value=1.3e-07 Score=91.69 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 115 VQKLLELVELKLKEVI--SREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 115 vk~Ll~~L~~~l~~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.+++.+++.+...+ ......+|+|+|.||||||||+|+|.+
T Consensus 9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhC
Confidence 4455566665555432 124457999999999999999999997
No 58
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=8.2e-08 Score=94.60 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS 194 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~ 194 (375)
..+.+++++|.||||||||+|+|.+ ...+.+++.|++|++... +.+.. ...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----------~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~ 86 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF 86 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-----------CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc
Confidence 4567999999999999999999997 344588999999988753 33322 024
Q ss_pred EEEEEcCCCCCC
Q 017187 195 IYVLDTPGVLVP 206 (375)
Q Consensus 195 ~~liDTPGi~~~ 206 (375)
++++||||+...
T Consensus 87 i~lvD~pGl~~~ 98 (392)
T 1ni3_A 87 LTVFDIAGLTKG 98 (392)
T ss_dssp EEEECTGGGCCC
T ss_pred eEEEeccccccC
Confidence 799999998754
No 59
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.2e-07 Score=82.69 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=46.3
Q ss_pred CccCHHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE
Q 017187 111 SRSSVQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK 188 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~ 188 (375)
....+..+.+.+.+.+... ......++|+++|.+|||||||+|+|.+.. .....++..|++|.+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~---------~~~~~~~~~~~~~~~~---- 88 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS---------VRPTVVSQEPLSAADY---- 88 (193)
T ss_dssp TTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS---------CC------------CC----
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC---------CCcccccCCCceeeee----
Confidence 3455677777776665433 223567899999999999999999999710 0112233445555443
Q ss_pred EccCCcEEEEEcCCCCCC
Q 017187 189 IAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 189 i~~~~~~~liDTPGi~~~ 206 (375)
....+.++||||....
T Consensus 89 --~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 89 --DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp --CCTTCSEEEETTCCBS
T ss_pred --cCCeEEEEECCCCchH
Confidence 2346889999998654
No 60
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.50 E-value=6.1e-07 Score=85.45 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=69.9
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhH-hhc--cCCCCEEEEEEcCCCC-ChhhHHHHHHHHh-hCC--CcEEEEec
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGL-QPQ--LSAKRRVIALNKKDLA-NPNILNKWVRHFD-SCK--QDYIAINA 109 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l-~~~--~~~kp~IiVlNK~DL~-~~~~~~~~~~~~~-~~g--~~vi~iSa 109 (375)
+.+...++.+|++++|+|+..+.+..+..+ .+. ..+.|+++|+||+|+. +......+.+.+. ..+ .+++++||
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA 163 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBT
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 445577899999999999987766544333 332 3468999999999998 6665555555554 233 57999999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+++.|++++++.+.+.+++
T Consensus 164 ~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 164 LKGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTTBSHHHHHHHHHHHSCB
T ss_pred CCCCCHHHHHHHHHHhCcc
Confidence 9999999999999888764
No 61
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.49 E-value=7.6e-08 Score=94.82 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEcc----------------CCc
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAH----------------RPS 194 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~----------------~~~ 194 (375)
..+.+++++|.||||||||+|+|.+ ....+++.|++|.+... +.+.. ...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg------------~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~ 87 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTN------------SQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAF 87 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC------------CCccccCCCccccCceeEEEEECCccceeeccccCcccccccc
Confidence 4567899999999999999999997 22477888999987653 22211 124
Q ss_pred EEEEEcCCCCCC
Q 017187 195 IYVLDTPGVLVP 206 (375)
Q Consensus 195 ~~liDTPGi~~~ 206 (375)
+.++||||+...
T Consensus 88 i~lvDtpGl~~~ 99 (396)
T 2ohf_A 88 LNVVDIAGLVKG 99 (396)
T ss_dssp EEEEECCC----
T ss_pred cEEEECCCcccc
Confidence 899999999864
No 62
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.49 E-value=5.2e-07 Score=78.34 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=61.5
Q ss_pred hhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHH----HHHHHhh-CCCcEEEEecCCccCH
Q 017187 43 LKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNK----WVRHFDS-CKQDYIAINAHSRSSV 115 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~-~g~~vi~iSa~~~~gv 115 (375)
...+|+|++|+|+..+.+.....+.++ ..+.|+++|+||+|+.+...... ..+.+.. ...+++.+||+++.|+
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 345599999999987655444344333 34789999999999987654433 2233333 2358999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017187 116 QKLLELVELKLKE 128 (375)
Q Consensus 116 k~Ll~~L~~~l~~ 128 (375)
+++++++.+.+.+
T Consensus 182 ~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 182 SELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887643
No 63
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.48 E-value=1.5e-07 Score=91.86 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=36.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
.|+++|.||||||||+|+|.+ ....+++.|++|++... +.+.+ ..+.++||||+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~------------~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG------------LTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIR 238 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC------------C-----------CCSCEEEEEETT-EEEEEEECCCBCS
T ss_pred EEEEECCCCCCHHHHHHHHHC------------CCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchh
Confidence 499999999999999999997 22466778899988753 44443 4688999999864
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.47 E-value=2.2e-07 Score=78.66 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
.++|+++|.+|||||||+|+|.+. .......+..|++.....+.+... -.+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN----------DFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 478999999999999999999961 111233445566555544444322 158899999954
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.47 E-value=1.6e-07 Score=79.34 Aligned_cols=101 Identities=18% Similarity=0.063 Sum_probs=67.1
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|++++|+|+..+.+-.+ ..+..+ ..+.|+++|+||+|+.+.....++.+.+.
T Consensus 49 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 127 (164)
T 1r8s_A 49 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 127 (164)
T ss_dssp EECCCCGG-GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred EEcCCChh-hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC
Confidence 34778732 22233456899999999999987632111 122222 23689999999999976543344444332
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 128 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 12346889999999999999999887654
No 66
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.45 E-value=3.8e-07 Score=92.31 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
+++.+..++.+|++|+|+|+..+.+..+..+.+...++|+++|+||+||.+....+++.+++ ..+.+++.+||+++.|+
T Consensus 314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 314 IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGL 392 (482)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCH
Confidence 35566789999999999999887654444444445678999999999997642333333333 23357899999999999
Q ss_pred HHHHHHHHHHH
Q 017187 116 QKLLELVELKL 126 (375)
Q Consensus 116 k~Ll~~L~~~l 126 (375)
++|++++.+.+
T Consensus 393 ~eL~~~l~~~~ 403 (482)
T 1xzp_A 393 EKLEESIYRET 403 (482)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 67
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2.6e-07 Score=80.90 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. .....+.+.+|+|.....+.+... ..+.++||||..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD----------HFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC----------CCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC----------CCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 45789999999999999999999971 112355667788776655544322 258899999954
No 68
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=3.3e-07 Score=78.70 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ .........|.++.+... +.+... -.+.++||||...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD-----------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh-----------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4568999999999999999999997 122222233444444332 223221 1478999999643
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.44 E-value=3.2e-07 Score=79.75 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=70.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch----hHhhc-------cCCCCEEEEEEcCCCCChhhHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP----GLQPQ-------LSAKRRVIALNKKDLANPNILNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~----~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~~ 95 (375)
..|||.. ........++++|++|+|+|+..+.+..+. .+.++ ..+.|+++|+||+||.+....++..+
T Consensus 80 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 158 (198)
T 3t1o_A 80 TVPGQVF-YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRA 158 (198)
T ss_dssp ECCSCCS-CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHH
T ss_pred eCCChHH-HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHH
Confidence 4677521 112233578999999999999744222111 12222 15789999999999987655555666
Q ss_pred HHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+..+. .++.+||+++.|++++++++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 6666677 89999999999999999998877654
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.44 E-value=2.5e-07 Score=78.40 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
..++|+++|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED-----------K-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC-----------C-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC-----------C-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 3578999999999999999999961 1 12223344444433 2333221 1478899999654
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.44 E-value=2.7e-07 Score=78.13 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+. .......+..|++.....+.+.. ...+.++||||..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKG----------QFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 34689999999999999999999961 11122334456665554444432 2247899999964
No 72
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.43 E-value=2.7e-07 Score=79.01 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ ........|++|.+.. .+.+... -.+.++||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD------------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS------------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 4568999999999999999999986 1122333455554443 3333321 2478899999643
No 73
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.43 E-value=1.9e-07 Score=81.03 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=70.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|++++|+|+..+.+-.+ ..+... ..+.|+++|+||+|+.+....++..+.+.
T Consensus 67 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (186)
T 1ksh_A 67 WDVGGQKS-LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALE 145 (186)
T ss_dssp EEECCSHH-HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred EECCCCHh-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC
Confidence 34788743 22233456889999999999987643221 122222 24689999999999987544444444442
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 146 LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 234578999999999999999999887765
No 74
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.42 E-value=2.3e-07 Score=88.31 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEE--EEccCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGF--KIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~--~i~~~~~~~liDTPGi~ 204 (375)
..++|+++|.||||||||+|.+.+ .....++..+|+|.+.... .+.+.-.+.++||||..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~-----------~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFS-----------NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHS-----------CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh-----------CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 357899999999999999999986 2334556678888877643 33333358899999975
No 75
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.41 E-value=4.4e-07 Score=77.03 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 4568999999999999999999996
No 76
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.41 E-value=2.8e-07 Score=77.54 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=63.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCC-cEEEEecCCcc
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQ-DYIAINAHSRS 113 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~-~vi~iSa~~~~ 113 (375)
+.....+..+|++++|+|+..+.+.....+.++ ..+.|+++|+||+|+.+... ...++. +.+. +++.+||+++.
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEHAR 147 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTTTB
T ss_pred HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEecccCC
Confidence 345567899999999999988765544444444 24789999999999976521 111222 3455 68999999999
Q ss_pred CHHHHHHHHHHHH
Q 017187 114 SVQKLLELVELKL 126 (375)
Q Consensus 114 gvk~Ll~~L~~~l 126 (375)
|++++++++.+.+
T Consensus 148 gv~~l~~~l~~~l 160 (161)
T 2dyk_A 148 GLEELLEAIWERL 160 (161)
T ss_dssp SHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 9999999887654
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.41 E-value=6.3e-07 Score=79.81 Aligned_cols=102 Identities=14% Similarity=-0.017 Sum_probs=70.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhcc-----CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQL-----SAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~~-----~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-..||+. +........++.+|++|+|+|+..+.+..+ ..+..+. .+.|+++|+||+|+.+... .+...++
T Consensus 89 ~Dt~G~~-~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 89 WDTAGQE-RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp EEEESHH-HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EECCCcH-hHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 3578874 333445677899999999999976533211 1122221 5689999999999975322 2233333
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
....+.+++.+||+++.|++++++++.+.+.+
T Consensus 168 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 168 ADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44557789999999999999999998876654
No 78
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.41 E-value=2.7e-07 Score=77.80 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=67.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-..||+.. ........+..+|++++|+|+..+.+... ..+..+ . .+.|+++|+||+|+.+... .++..++
T Consensus 57 ~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (168)
T 1u8z_A 57 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135 (168)
T ss_dssp EECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EECCCcch-hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH
Confidence 44788742 22344567889999999999986532111 111111 1 3789999999999975321 2334444
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+..+.+++.+||+++.|++++++++.+.+.
T Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 136 ADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4455678999999999999999999887654
No 79
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.41 E-value=1.5e-07 Score=80.66 Aligned_cols=60 Identities=30% Similarity=0.474 Sum_probs=41.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
....+|+++|.+|||||||+|+|.+ ........|++|.+... +.+. +..+.++||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH------------SKVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT------------TCSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------------CccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHH
Confidence 4578999999999999999999996 11223344555555432 3233 23588999999754
No 80
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.41 E-value=6.1e-07 Score=90.79 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=77.7
Q ss_pred ceEEeeCCCc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhH
Q 017187 15 EMGFTKGGGN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNIL 90 (375)
Q Consensus 15 ~~~~~~~~~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~ 90 (375)
...+.....+ +-..|||. +..+.+...+..+|++|+|+|++.+........... ..+.|.++|+||+|+.+++..
T Consensus 65 ~~~~~~~~~~i~iiDtPGh~-~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 65 FSAFKLENYRITLVDAPGHA-DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI 143 (482)
T ss_dssp CCEEEETTEEEEECCCSSHH-HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH
T ss_pred eEEEEECCEEEEEEECCChH-HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH
Confidence 3444444322 45689994 456778888999999999999987543222111111 356888999999999975433
Q ss_pred H----HHHHHHhhC----CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 91 N----KWVRHFDSC----KQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 91 ~----~~~~~~~~~----g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+ ++.+++... +.+++++||+++.|+++|+++|.+.++
T Consensus 144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2 233444333 457899999999999999999988765
No 81
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=2.2e-07 Score=80.90 Aligned_cols=102 Identities=18% Similarity=0.069 Sum_probs=67.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|++|+|+|+..+.+-.+ ..+... ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 65 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~ 143 (187)
T 1zj6_A 65 WDIGGQES-LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 143 (187)
T ss_dssp EECCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred EECCCCHh-HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC
Confidence 34677732 22233466889999999999987643211 122222 24789999999999986433334444432
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+..++.+||+++.|++++++++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 144 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234578999999999999999999877644
No 82
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.41 E-value=5.3e-07 Score=77.06 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~ 204 (375)
..++|+|+|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD-----------S-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS-----------C-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC-----------C-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4589999999999999999999961 1 12222344444443 2333321 147899999964
No 83
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.40 E-value=4.6e-07 Score=77.53 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+. .......+..|.+.....+.+... -.+.++||||..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN----------KFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS----------CCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 34679999999999999999999961 011122222333332233333321 158899999953
No 84
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.40 E-value=4.1e-07 Score=76.88 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999999996
No 85
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.40 E-value=5.1e-07 Score=89.38 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=72.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-CCCc-hhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-SSAH-PGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-s~~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~ 96 (375)
+-..|||. +..+.+...+..+|++|+|+|++.+. .... ..+..+ ...+|+++|+||+|+.+.+. .+++.++
T Consensus 87 iiDtPGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 87 FIDAPGHE-ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EEECSSHH-HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCChH-HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 34589995 45566777788999999999998764 1111 111111 34468999999999987643 2334455
Q ss_pred Hhh---CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDS---CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.. .+.+++++|++++.|+++|+++|...++.
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 532 34689999999999999999999887654
No 86
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.39 E-value=3.6e-07 Score=96.49 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCe
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGV 180 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~ 180 (375)
...++|+|+|.||||||||+|+|.+ .....++..|+|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg-----------~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIG-----------ENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHT-----------SSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCCCCCc
Confidence 4678999999999999999999997 345667777777
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.39 E-value=4.8e-07 Score=76.83 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+ .......+..|.+.. .+.+. ...+.++||||..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNVE--TVTYK-NLKFQVWDLGGLT 62 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEE--EEEET-TEEEEEEEECCCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCCcCCcCccceE--EEEEC-CEEEEEEECCCCh
Confidence 4568999999999999999999986 122222233333322 23333 3358899999974
No 88
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.38 E-value=3.1e-07 Score=79.53 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=69.4
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-..|||. +........++++|++|+|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+... .+...++
T Consensus 75 ~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (195)
T 3bc1_A 75 WDTAGLE-RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL 153 (195)
T ss_dssp EEECCSG-GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EeCCCcH-HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 3467773 223345567899999999999976543221 112222 1 5789999999999975321 2233334
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
....+.+++.+|++++.|++++++++.+.+.+
T Consensus 154 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 154 AEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44456789999999999999999998877654
No 89
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.38 E-value=6.4e-07 Score=78.03 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+ ........|++|.+.. .+.+... -.+.++||||...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD------------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc------------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3468999999999999999999996 1122233344444433 3334322 1478999999643
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.38 E-value=3.1e-07 Score=79.08 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=69.7
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPN--ILNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~--~~~~~~~~ 96 (375)
-..|||.. ........+..+|++++|+|+..+.+... ..+..+ . .+.|+++|+||+|+.+.. ..++..++
T Consensus 71 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 149 (187)
T 2a9k_A 71 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149 (187)
T ss_dssp EECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EECCCCcc-cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH
Confidence 34677642 22334466889999999999986532111 111111 2 378999999999997532 23344455
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+..+.+++.+|++++.|++++++++.+.+.+
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 150 AEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 55667789999999999999999999877654
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.38 E-value=5.1e-07 Score=79.87 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED-----------K-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC-----------C-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC-----------C-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45689999999999999999999961 1 12223344444433 3333321 2488999999654
No 92
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=2.7e-07 Score=79.20 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=65.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 66 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 144 (180)
T 2g6b_A 66 DTAGQER-FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144 (180)
T ss_dssp ECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred eCCCcHH-HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence 4788743 22334456899999999999986543211 112222 14689999999999985421 223333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999998877653
No 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.37 E-value=6.5e-07 Score=75.31 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999999996
No 94
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.37 E-value=6.7e-07 Score=77.24 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK-----------K-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS-----------S-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC-----------C-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 34689999999999999999999961 1 11222333443332 2333321 157899999953
No 95
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.37 E-value=5.1e-07 Score=89.35 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=69.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC-Cc-hhHhhc--cCCCCEEEEEEcCCCCChhh----HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS-AH-PGLQPQ--LSAKRRVIALNKKDLANPNI----LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~-~~-~~l~~~--~~~kp~IiVlNK~DL~~~~~----~~~~~~~~ 97 (375)
-..|||. +..+.+...+..+|++|+|+|++.+... +. ..+..+ ...+|+++|+||+|+.+.+. .+++.+++
T Consensus 86 iDtPGh~-~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHE-TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHH-HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred EECCCHH-HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 4579995 4455666667888999999999876411 11 111111 34468999999999986532 33444555
Q ss_pred hh---CCCcEEEEecCCccCHHHHHHHHHHHHhhh-hccCCceEEEE
Q 017187 98 DS---CKQDYIAINAHSRSSVQKLLELVELKLKEV-ISREPTLLVMV 140 (375)
Q Consensus 98 ~~---~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~-~~~~~~~~v~v 140 (375)
.. .+.+++++||+++.|+++|+++|.+.++.. .....+.+..+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v 211 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYV 211 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEE
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEE
Confidence 32 245799999999999999999998876542 12233445544
No 96
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.37 E-value=4e-07 Score=79.35 Aligned_cols=89 Identities=18% Similarity=0.074 Sum_probs=62.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--c-----CCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEE
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--L-----SAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYI 105 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi 105 (375)
...++++|++|+|+|+..+.+-.+ ..+..+ . .+.|+++|+||+|+.+....+++.+++. ..+..++
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC 164 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence 356789999999999986532111 122222 1 4789999999999986544444444442 2345789
Q ss_pred EEecCCccCHHHHHHHHHHHHhh
Q 017187 106 AINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+||+++.|++++++++.+.+.+
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC--
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999877643
No 97
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.36 E-value=2e-06 Score=85.91 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=69.3
Q ss_pred hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCch-hHhhc-cCCCC-
Q 017187 9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAHP-GLQPQ-LSAKR- 74 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~~-~l~~~-~~~kp- 74 (375)
+|+++......+...+ +-.-|||- +..+.+...+..+|++|+|+|++.+.. .+.. .+... ..+.|
T Consensus 79 ~GiTid~~~~~~~~~~~~~~iiDTPGh~-~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 79 KGKTVEVGRAYFETEKKHFTILDAPGHK-SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred cCceEEEeEEEEecCCeEEEEEECCChH-HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 4555443333333322 45689994 557778888999999999999987643 1111 11111 34566
Q ss_pred EEEEEEcCCCCCh----hhH----HHHHHHHhhCC------CcEEEEecCCccCHHHHHH
Q 017187 75 RVIALNKKDLANP----NIL----NKWVRHFDSCK------QDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 75 ~IiVlNK~DL~~~----~~~----~~~~~~~~~~g------~~vi~iSa~~~~gvk~Ll~ 120 (375)
+|+|+||+|+.+. +.. ++..+++.+.+ .+++++||+++.|+.++.+
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 8999999999642 111 22333333333 3689999999999988543
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.36 E-value=3.1e-07 Score=80.72 Aligned_cols=101 Identities=18% Similarity=0.083 Sum_probs=65.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|++|+|+|+..+.+-.+ ..+.++ ..+.|+++|+||+|+.+....+++.+.+.
T Consensus 78 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~ 156 (192)
T 2b6h_A 78 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG 156 (192)
T ss_dssp EECC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred EECCCCHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhC
Confidence 34788732 22233457889999999999987632211 122222 13689999999999976543344444332
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 12346889999999999999999877653
No 99
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.36 E-value=4.6e-07 Score=79.02 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=67.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.....++.+.+.
T Consensus 72 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 150 (188)
T 1zd9_A 72 WDIGGQPR-FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN 150 (188)
T ss_dssp EEECCSHH-HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred EECCCCHh-HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC
Confidence 34788743 22334566799999999999976533211 122222 25789999999999986533334444432
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+..++.+||+++.|++++++++.+.+.
T Consensus 151 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 151 LSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred hhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22346789999999999999999877654
No 100
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.36 E-value=4e-07 Score=77.84 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=68.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .++..++.+
T Consensus 70 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 70 DTAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148 (179)
T ss_dssp ECTTGGG-TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCChH-hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 4677632 22335567899999999999986533211 111111 25688999999999974322 234444555
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
..+..++.+||+++.|++++++++.+.+
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5677899999999999999999887665
No 101
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.36 E-value=8.1e-07 Score=78.20 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK-----------K-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS-----------C-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC-----------C-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45789999999999999999999971 1 11122233333333 2333221 1478999999643
No 102
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.36 E-value=7.8e-07 Score=77.40 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999997
No 103
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.35 E-value=1e-07 Score=92.37 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=44.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
+|+++|.||||||||||+|.+ ....+++.|++|..... +.+.....+.++||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~------------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSS------------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEE------------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHc------------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 588999999999999999986 23456788888887663 3344335699999999754
No 104
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.35 E-value=5.5e-07 Score=78.67 Aligned_cols=101 Identities=17% Similarity=0.032 Sum_probs=67.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-c-----------CCCCEEEEEEcCCCCChhhHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-L-----------SAKRRVIALNKKDLANPNILNK 92 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-~-----------~~kp~IiVlNK~DL~~~~~~~~ 92 (375)
..||+.. ........++.+|++|+|+|+..+.+-.+ ..+..+ . .+.|+++|+||+||.+....++
T Consensus 69 Dt~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 147 (199)
T 4bas_A 69 DMGGAKK-FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE 147 (199)
T ss_dssp EECCSGG-GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH
T ss_pred ECCCCHh-HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH
Confidence 3567632 12223355789999999999987643111 122222 1 1789999999999987643333
Q ss_pred HHHHH------hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 93 WVRHF------DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 93 ~~~~~------~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+.+ +..+..++.+||+++.|+++++++|.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 33332 2345678999999999999999999887765
No 105
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.35 E-value=7.3e-07 Score=77.78 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. ... ...+..|++.....+.+.. .-.+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN-----------EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS-----------CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 44689999999999999999999971 111 1222334444333333322 12478999999854
No 106
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.35 E-value=7.6e-07 Score=77.09 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+ .......+..|.+.. .+.+. ...+.++||||..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISPTLGFNIK--TLEHR-GFKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCCCSSEEEE--EEEET-TEEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc-----------CCCCcccccCccceE--EEEEC-CEEEEEEECCCCH
Confidence 4678999999999999999999996 122333334444432 23232 3368899999973
No 107
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.35 E-value=6.7e-07 Score=76.40 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. .......+..|.+.....+.+... -.+.++||||..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK----------KFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS----------CCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC----------CCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 44689999999999999999999971 111222233344444434434321 247899999954
No 108
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.35 E-value=9.3e-07 Score=84.02 Aligned_cols=91 Identities=16% Similarity=0.044 Sum_probs=66.5
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc-c---CCCCEEEEEEcCCCCChhh-HHHHHHHHhhCCCcEEEEecCC
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-L---SAKRRVIALNKKDLANPNI-LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-~---~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
......++.+|++++|+|+..+.+.....+.+. . .+.|+++|+||+|+.+... +.++.+.+ ....+++++||++
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALD 156 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCC
Confidence 455678899999999999988765544444332 1 2789999999999986544 44444443 1223689999999
Q ss_pred ccCHHHHHHHHHHHHhh
Q 017187 112 RSSVQKLLELVELKLKE 128 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~ 128 (375)
+.|++++++.+...+++
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999998876643
No 109
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.34 E-value=7.3e-07 Score=78.13 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
.+..+|+++|.+|||||||+|+|.+ .+.....+..|.+.. .+.+.+ -.+.++||||...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~~-~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTSE--ELAIGN-IKFTTFDLGGHIQ 79 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEEE--EEEETT-EEEEEEECCCSGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCccccCCCCCeE--EEEECC-EEEEEEECCCCHH
Confidence 3457899999999999999999996 122334444455432 333333 3588999999754
No 110
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.34 E-value=5.9e-07 Score=76.28 Aligned_cols=101 Identities=18% Similarity=0.098 Sum_probs=67.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+.. ........++.+|++|+|+|+..+.+-.+ ..+..+ ..+.|+++|+||+|+.+.....++.+.+.
T Consensus 57 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (171)
T 1upt_A 57 DLGGLTS-IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL 135 (171)
T ss_dssp EECCCGG-GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG
T ss_pred ECCCChh-hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc
Confidence 3667632 11223356789999999999987643211 122222 15789999999999987543334443332
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 234578999999999999999999877653
No 111
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=8.5e-07 Score=77.05 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=41.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
..++|+|+|.+|||||||+|+|.+. .......+..|++.....+.+... ..+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD----------TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS----------CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC----------CCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 4589999999999999999999971 111223344455555444444322 2478999999653
No 112
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.33 E-value=4.3e-07 Score=81.34 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+++. + .......+.+|+|.....+.+... -.+.++||||...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~-~---------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLT-G---------EFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHH-H---------HHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc-C---------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 4568999999999999999999553 1 123455677888887765544432 2478999999643
No 113
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.32 E-value=3e-07 Score=89.89 Aligned_cols=59 Identities=31% Similarity=0.420 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEc--------------------cCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIA--------------------HRP 193 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~--------------------~~~ 193 (375)
+++++||.||||||||+|+|.+. .+.+++.|++|..... ..+. ...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~------------~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA------------NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH------------HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence 35899999999999999999971 2456677777765431 1111 122
Q ss_pred cEEEEEcCCCCCC
Q 017187 194 SIYVLDTPGVLVP 206 (375)
Q Consensus 194 ~~~liDTPGi~~~ 206 (375)
.+.++||||+...
T Consensus 70 ~i~lvDtpGl~~~ 82 (368)
T 2dby_A 70 HVEFVDIAGLVKG 82 (368)
T ss_dssp EEEEEECCSCCCC
T ss_pred eEEEEECCCcccc
Confidence 5899999999764
No 114
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.32 E-value=8.9e-07 Score=88.84 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhh-----CCCcEE
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDS-----CKQDYI 105 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~-----~g~~vi 105 (375)
...+....++.+|++|+|+|+..+.+..+..+... ..++|+++|+||+|+.+.. ..++..+++++ .+.+++
T Consensus 267 ~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 267 SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 33445567899999999999998776555444444 3679999999999998542 22333333321 145899
Q ss_pred EEecCCccCHHHHHHHHHHHHhh
Q 017187 106 AINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++||+++.|++++++.+.+.+..
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887765
No 115
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.32 E-value=9.8e-07 Score=76.79 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=41.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. .......+..|++.....+.... .-.+.++||||...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD----------SFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS----------CCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC----------CCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 34689999999999999999999971 11112233445555444333332 12578999999654
No 116
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.31 E-value=1.2e-06 Score=73.64 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999997
No 117
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.31 E-value=3.8e-07 Score=88.50 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....++++|.||||||||+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999986
No 118
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.31 E-value=1.4e-06 Score=75.11 Aligned_cols=100 Identities=15% Similarity=0.036 Sum_probs=65.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.
T Consensus 72 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~ 150 (183)
T 3kkq_A 72 DTAGQEE-FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150 (183)
T ss_dssp ECCSCGG-GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH
T ss_pred ECCCchh-hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH
Confidence 3566532 11223456789999999999986532111 111111 25689999999999975321 22233333
Q ss_pred hhCCCcEEEEecC-CccCHHHHHHHHHHHHh
Q 017187 98 DSCKQDYIAINAH-SRSSVQKLLELVELKLK 127 (375)
Q Consensus 98 ~~~g~~vi~iSa~-~~~gvk~Ll~~L~~~l~ 127 (375)
+..+.+++.+||+ ++.|++++++.+.+.+.
T Consensus 151 ~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 151 TKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 3446789999999 99999999999887664
No 119
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.31 E-value=9.1e-07 Score=76.35 Aligned_cols=59 Identities=29% Similarity=0.253 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
..++|+++|.+|||||||+|+|.+. . .....++++.+.. .+.+... ..+.++||||...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN-----------H--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS-----------S--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC-----------C--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 4679999999999999999999961 1 1222333443332 2222221 1266799999654
No 120
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.31 E-value=6.7e-07 Score=78.72 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. .-.....+..|++.....+.+... ..+.++||||..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN----------EFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC----------CCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC----------CCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 45789999999999999999999961 111233344455544444444322 247899999964
No 121
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.30 E-value=1.1e-06 Score=76.37 Aligned_cols=62 Identities=23% Similarity=0.204 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. . ......+..|++.....+.+... -.+.++||||..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~-~---------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG-R---------FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS-S---------CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC-C---------CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 45689999999999999999999861 1 11112222233333333333321 258899999953
No 122
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.30 E-value=1.2e-06 Score=77.02 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc-CCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH-RPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~-~~~~~liDTPGi~ 204 (375)
..++|+|+|.+|||||||+|+|.+. .......+..|++.....+.+.. ...+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD----------SFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC----------CCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC----------CCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 3579999999999999999999961 11122233345555444443332 1257899999974
No 123
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.30 E-value=6.4e-07 Score=77.51 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ .....+.+..|.+.. .+.+. +..+.++||||...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT-----------TSCEEEECCSSSSCE--EEEET-TEEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCcCceeeE--EEEEC-CEEEEEEECCCCHh
Confidence 4578999999999999999999997 122344455554432 23232 34688999999743
No 124
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.30 E-value=9e-07 Score=76.21 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ .......+..|.+.. .+.+. +..+.++||||...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVE--TLSYK-NLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEE--EEEET-TEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCcCccCCcCccceE--EEEEC-CEEEEEEECCCCHh
Confidence 5689999999999999999999985 122344444554332 23232 23588999999864
No 125
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.4e-06 Score=75.64 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ .....+.+..|.+.. .+.+. +..+.++||||...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCE--EEEET-TEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCcCcCCCccceE--EEEEC-CEEEEEEECCCCHh
Confidence 5678999999999999999999996 111233333443322 22232 34688999999854
No 126
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.29 E-value=5.1e-07 Score=92.84 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc--ccCCCCCeeee
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA--TVGPLPGVTQD 183 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~--~v~~~pg~T~~ 183 (375)
...+|+|+|.+|||||||+|+|++ .+.+ .++..|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg-----------~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLE-----------QEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHT-----------SCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC-----------CccccCccCCCCccceE
Confidence 457999999999999999999997 2222 46777777653
No 127
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.29 E-value=7.8e-07 Score=77.34 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=61.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEEe
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAIN 108 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~iS 108 (375)
..++++|++|+|+|+..+.+-.+ ..+.+. ..+.|+++|+||+|+.+.....++.+.+. ..+.+++.+|
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 35679999999999987643211 122222 14689999999999986543333333331 2344688999
Q ss_pred cCCccCHHHHHHHHHHHHhh
Q 017187 109 AHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~~l~~ 128 (375)
|+++.|++++++++.+.+.+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHh
Confidence 99999999999999887755
No 128
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.29 E-value=5e-07 Score=76.02 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. ........++.+|.+++|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.
T Consensus 57 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T 1kao_A 57 DTAGTEQ-FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA 135 (167)
T ss_dssp ECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred ECCCchh-hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH
Confidence 4677532 12233456889999999999986532111 111111 24789999999999975322 22233333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+..+.+++.+||+++.|++++++++.+.+.
T Consensus 136 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 136 EEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 345678999999999999999999887664
No 129
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.29 E-value=8.4e-07 Score=77.71 Aligned_cols=100 Identities=9% Similarity=-0.030 Sum_probs=66.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhc-cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQ-LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~-~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+. .+... ..+.|+++|+||+|+.+... .+...++.+
T Consensus 81 Dt~G~~~-~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 159 (192)
T 2il1_A 81 DTAGQER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ 159 (192)
T ss_dssp EECCSGG-GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred eCCCcHH-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 4677632 223345678999999999999875432211 11111 24689999999999975322 122233333
Q ss_pred h-CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 S-CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~-~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
. .+..++.+||+++.|++++++++.+.+.
T Consensus 160 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 160 QITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 2668899999999999999999877664
No 130
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.29 E-value=1.1e-06 Score=77.64 Aligned_cols=102 Identities=16% Similarity=-0.007 Sum_probs=69.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~ 97 (375)
-..||+.. ........++++|++|+|+|+..+.+-.+ ..+..+ ..+.|+++|+||+||.+.. ..++..++.
T Consensus 83 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 161 (201)
T 2hup_A 83 WDTAGQER-FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA 161 (201)
T ss_dssp ECCTTCGG-GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EECCCcHh-HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH
Confidence 34788742 22334567899999999999876533111 112222 1468999999999997532 123344444
Q ss_pred hhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+. .++.+||+++.|++++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 162 EHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45677 88999999999999999998877654
No 131
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.29 E-value=1e-06 Score=75.61 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+. ... ...+..|++.....+.+... ..+.++||||..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD-----------QFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC-----------CCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC-----------CCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 45689999999999999999999961 111 11122233333333333321 258899999954
No 132
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.28 E-value=1e-06 Score=77.82 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=67.6
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH-HHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL-NKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~-~~~~~~~~ 98 (375)
-..|||... .......+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.... +...++..
T Consensus 74 ~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 152 (213)
T 3cph_A 74 WDTAGQERF-RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 152 (213)
T ss_dssp ECCTTGGGG-TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH
T ss_pred EeCCCcHHH-HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH
Confidence 346776421 2223466889999999999976532111 112222 136899999999999543222 22223333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKEV 129 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~ 129 (375)
..+.+++.+||+++.|++++++++.+.+.+.
T Consensus 153 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4467899999999999999999998877653
No 133
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.28 E-value=1.4e-06 Score=73.43 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 57899999999999999999996
No 134
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.27 E-value=1.2e-06 Score=77.36 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD-----------T-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC-----------C-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC-----------C-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 34579999999999999999999971 1 11222333333332 3333321 1488999999754
No 135
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.27 E-value=1.6e-06 Score=74.05 Aligned_cols=60 Identities=28% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+. ..+...++++.... .+.+... ..+.++||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS-------------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS-------------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC-------------cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999971 11222333333322 1223221 2477899999754
No 136
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.2e-06 Score=74.10 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||+|+|.+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999996
No 137
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.26 E-value=8.7e-07 Score=76.95 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD- 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~- 98 (375)
..||+.. ........+..+|++++|+|+..+.+-.+ ..+.++ ..+.|+++|+||+|+.+....++..+.+.
T Consensus 66 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 144 (181)
T 1fzq_A 66 DIGGQRK-IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 144 (181)
T ss_dssp ECSSCGG-GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred ECCCCHH-HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCc
Confidence 4677632 12223466889999999999976533211 122222 24689999999999986544444444432
Q ss_pred ----hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 ----SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+..++.+||+++.|++++++++.+.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 12346889999999999999999876653
No 138
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.26 E-value=5.7e-07 Score=78.13 Aligned_cols=58 Identities=17% Similarity=0.348 Sum_probs=40.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|.|.+ .....+.+.+|.+... +.+. +-.+.++||||..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----------~~~~~~~~t~g~~~~~--~~~~-~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIKS--VQSQ-GFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEEE--EEET-TEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc-----------CCCCcccCcCCeEEEE--EEEC-CEEEEEEECCCCH
Confidence 4678999999999999999999986 1223344555655432 2233 3358899999964
No 139
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.26 E-value=1.7e-06 Score=75.14 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=68.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc--cCCCCEEEEEEcCCCCCh-hhHHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ--LSAKRRVIALNKKDLANP-NILNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~--~~~kp~IiVlNK~DL~~~-~~~~~~~~~~~~~g 101 (375)
..|||.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+... ...++..++.++.+
T Consensus 99 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~ 177 (208)
T 3clv_A 99 DTAGQER-YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNN 177 (208)
T ss_dssp ECTTGGG-CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTT
T ss_pred ECCCcHH-HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcC
Confidence 3677632 22234567889999999999987633211 112222 245899999999994322 22345555665667
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+++.+||+++.|++++++++.+.+.+
T Consensus 178 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 178 LLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998876644
No 140
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=77.11 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=68.5
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChh--hHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPN--ILNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~--~~~~~~~~ 96 (375)
-..||+.. ........+..+|++++|+|+..+.+... ..+..+ . .+.|+++|+||+|+.+.. ..+...++
T Consensus 67 ~Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (206)
T 2bov_A 67 LDTAGQED-YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145 (206)
T ss_dssp EECCCTTC-CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EcCCChhh-hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH
Confidence 34677632 22234466889999999999976532111 111111 2 378999999999997532 22344444
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+..+.+++.+||+++.|++++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 146 AEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 44556789999999999999999998877654
No 141
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.25 E-value=1.3e-06 Score=75.19 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLVP 206 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~~ 206 (375)
..++|+++|.+|||||||+|+|.+. .......+..+.+. ...+.+... -.+.++||||....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG----------QFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS----------SCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC----------CCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh
Confidence 4679999999999999999999961 11122223333333 122223221 13679999997653
No 142
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.25 E-value=1.8e-06 Score=75.75 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999996
No 143
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.25 E-value=1e-06 Score=75.86 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=66.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..||+.. ........++++|++++|+|+..+.+-.. ..+... ..+.|+++|+||+|+.+.....++.+++.
T Consensus 67 ~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 145 (183)
T 1moz_A 67 WDLGGQTS-IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN 145 (183)
T ss_dssp EEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred EECCCCHh-HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC
Confidence 34677642 11223456789999999999987633211 122222 25689999999999986543444444442
Q ss_pred -----hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 -----SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 -----~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 123468999999999999999999877654
No 144
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.25 E-value=1.1e-06 Score=75.36 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999997
No 145
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.24 E-value=6.9e-07 Score=77.32 Aligned_cols=85 Identities=18% Similarity=0.073 Sum_probs=59.1
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEE
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAI 107 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~i 107 (375)
...++++|++|+|+|+..+.+-.+ ..+... ..+.|+++|+||+||.+....+++.+++. ..+..++.+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence 356789999999999987633211 122222 25689999999999976433334444332 234478999
Q ss_pred ecCCccCHHHHHHHHHH
Q 017187 108 NAHSRSSVQKLLELVEL 124 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~ 124 (375)
||+++.|++++++++.+
T Consensus 163 Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 163 CALTGEGLCQGLEWMMS 179 (181)
T ss_dssp BTTTTBTHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHh
Confidence 99999999999988754
No 146
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.24 E-value=1.9e-06 Score=72.16 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+++|.+|||||||+|+|.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999996
No 147
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=1.7e-06 Score=76.77 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGV 203 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi 203 (375)
...++|+++|.+|||||||+|+|.+. . ......|.++.+.. .+.+... -.+.++||||.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG-----------L-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS-----------S-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC-----------C-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 44689999999999999999999861 1 11122232333332 3333321 14789999995
No 148
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.24 E-value=1e-06 Score=76.10 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHH-HHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNK-WVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~-~~~~~~ 98 (375)
..||+.. ........+..+|++++|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.....+ ..++..
T Consensus 58 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 136 (189)
T 4dsu_A 58 DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR 136 (189)
T ss_dssp ECCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH
T ss_pred ECCCcHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH
Confidence 4677643 22233456789999999999976532111 111111 24689999999999985433222 222333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+..
T Consensus 137 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999998877654
No 149
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.23 E-value=1.1e-06 Score=76.90 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. .......+..|++.....+.+... -.+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD----------TFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC----------CCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 45689999999999999999999861 011122233344443334444321 247899999953
No 150
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.23 E-value=9.8e-07 Score=77.89 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=35.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeee--EEEEEccC-CcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDI--AGFKIAHR-PSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~--~~~~i~~~-~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. . ......|.++.+. ..+.+... -.+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN-----------K-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC-----------C-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 45689999999999999999999861 1 1111223233222 22333321 258899999963
No 151
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.23 E-value=2.1e-06 Score=73.85 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3568999999999999999999996
No 152
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.23 E-value=2.1e-06 Score=74.17 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999999999999996
No 153
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.23 E-value=1.6e-06 Score=76.99 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEcc--CCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAH--RPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~--~~~~~liDTPGi~ 204 (375)
...++|+++|.+|||||||+|+|.+. . .....+.++.+...+.+.. .-.+.++||||..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG-----------Q--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS-----------C--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------C--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 45679999999999999999999971 1 1122233444433444443 2358999999974
No 154
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.23 E-value=6.4e-07 Score=75.72 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..|||.. ........++.+|++|+|+|+..+.+... ..+..+ ....|+++|.||+|+.+... .++..++..
T Consensus 61 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1r2q_A 61 DTAGQER-YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD 139 (170)
T ss_dssp EECCSGG-GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred eCCCcHH-hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH
Confidence 3677632 22234466889999999999976532111 112222 23678899999999975321 233344444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
..+.+++.+||+++.|++++++++.+.+
T Consensus 140 ~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 140 DNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5677889999999999999999987654
No 155
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.23 E-value=1.1e-06 Score=88.70 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=62.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCC----CchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-CCcEEEEecCC
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSS----AHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSC-KQDYIAINAHS 111 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~----~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-g~~vi~iSa~~ 111 (375)
++....++.+|++|+|+|+..+.+. ....+.+...++|+++|+||+|+.+...... +.+.+. ..+++.+||++
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALN 381 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTT
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECC
Confidence 4455678999999999999887664 2222222245789999999999987654322 222221 25789999999
Q ss_pred ccCHHHHHHHHHHHHh
Q 017187 112 RSSVQKLLELVELKLK 127 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~ 127 (375)
+.|+++|++++.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987764
No 156
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.23 E-value=2.3e-06 Score=72.53 Aligned_cols=102 Identities=17% Similarity=0.022 Sum_probs=64.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+...........++.+|++++|+|+..+.+-.. ..+..+ . .+.|+++|+||+|+.+... .+...++.
T Consensus 57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 136 (169)
T 3q85_A 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 136 (169)
T ss_dssp CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH
Confidence 4677643221122234778999999999976432111 122222 1 3789999999999974321 22333344
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+.+++.+||+++.|++++++.+.+.+..
T Consensus 137 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 137 GTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 4557789999999999999999998876643
No 157
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.23 E-value=1.6e-06 Score=73.06 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
++|+++|.+|||||||+|+|.+. ......+..|.. ...+.. ....+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~-----------~~~~~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG-----------EIVTTIPTIGFN--VETVEY-KNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-----------CSSCCCCCSSCC--EEEEEC-SSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-----------CcCcccCcCcee--EEEEEE-CCEEEEEEEcCCCh
Confidence 47999999999999999999861 111111211211 112222 23468999999974
No 158
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.23 E-value=2.2e-06 Score=74.54 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=68.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~ 98 (375)
..||+.. ........+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.... ....++..
T Consensus 71 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 149 (196)
T 3tkl_A 71 DTAGQER-FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149 (196)
T ss_dssp EECCSGG-GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred ECCCcHh-hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 4677632 22234467889999999999986432111 111111 236899999999999865322 22333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 150 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 557789999999999999999999887765
No 159
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.22 E-value=1.3e-06 Score=73.88 Aligned_cols=101 Identities=11% Similarity=0.024 Sum_probs=67.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh-HHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI-LNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~ 99 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+.
T Consensus 58 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 136 (170)
T 1g16_A 58 DTAGQER-FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE 136 (170)
T ss_dssp CCTTGGG-TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH
T ss_pred eCCCChh-hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHH
Confidence 5777632 11223466789999999999976533111 112221 14689999999999954322 2223333344
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+.+++.+||+++.|++++++++.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999887754
No 160
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.22 E-value=1.1e-06 Score=74.96 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=66.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .....++..
T Consensus 69 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (179)
T 2y8e_A 69 DTAGQER-FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 147 (179)
T ss_dssp EECCSGG-GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHH-HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH
Confidence 4577532 22233466889999999999976532111 112222 24688999999999975422 233344444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 148 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 55678999999999999999999876553
No 161
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.22 E-value=1.3e-06 Score=74.78 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999999999996
No 162
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.22 E-value=6.7e-07 Score=77.20 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c----cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEec
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q----LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINA 109 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa 109 (375)
++.+....+..+|++++|+|+..+.+.....+.. + ..++|+++|+||+||.+... ++.+..+.+++.+||
T Consensus 73 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA 147 (172)
T 2gj8_A 73 GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSA 147 (172)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeC
Confidence 3455667789999999999998776644332222 1 23689999999999854311 011123457889999
Q ss_pred CCccCHHHHHHHHHHHHh
Q 017187 110 HSRSSVQKLLELVELKLK 127 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~ 127 (375)
+++.|++++++.+.+.+.
T Consensus 148 ~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTCTTHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999877654
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.22 E-value=1.3e-06 Score=87.00 Aligned_cols=108 Identities=20% Similarity=0.248 Sum_probs=66.5
Q ss_pred hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEc
Q 017187 9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNK 81 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK 81 (375)
+|+++........... +-..|||.. ..+.+...+..+|++|+|+|++.+........... ...+|+++|+||
T Consensus 88 rGiTi~~~~~~~~~~~~~~~iiDtpGh~~-f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK 166 (434)
T 1zun_B 88 QGITIDVAYRYFSTAKRKFIIADTPGHEQ-YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK 166 (434)
T ss_dssp --CCCCCEEEEEECSSEEEEEEECCCSGG-GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCcEEEeeeeEeecCCceEEEEECCChHH-HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 4565443333333222 345799964 34556677899999999999987653322111111 233458999999
Q ss_pred CCCCCh--hh----HHHHHHHHhhCC-----CcEEEEecCCccCHHH
Q 017187 82 KDLANP--NI----LNKWVRHFDSCK-----QDYIAINAHSRSSVQK 117 (375)
Q Consensus 82 ~DL~~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~~~gvk~ 117 (375)
+|+.+. +. .+++.++++..+ .+++++||+++.|+++
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 999862 22 223444444455 4688999999999876
No 164
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.22 E-value=1.3e-06 Score=74.89 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=68.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..|||.. ........++.+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 67 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 145 (181)
T 2efe_B 67 DTAGQER-YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145 (181)
T ss_dssp ECCCSGG-GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCCChh-hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH
Confidence 4778642 22233466889999999999976533111 112222 13678999999999975432 234444444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 ENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567789999999999999999998776543
No 165
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.21 E-value=2.5e-06 Score=71.92 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=60.1
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhC-CCcEEEEec
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSC-KQDYIAINA 109 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~-g~~vi~iSa 109 (375)
...+.++|++++|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+.. +.+++.+||
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 456789999999999986532111 112222 24789999999999975322 22233333333 578999999
Q ss_pred CCccCHHHHHHHHHHHH
Q 017187 110 HSRSSVQKLLELVELKL 126 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l 126 (375)
+++.|++++++++.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987664
No 166
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.21 E-value=1.6e-06 Score=75.68 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccccc--CCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATV--GPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v--~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
....+|+|+|.+|||||||+|+|.+ .....+ .+..|.+.. .+. .....+.++||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~-----------~~~~~~~~~~t~~~~~~--~~~-~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP-----------AQSSSKHITATVGYNVE--TFE-KGRVAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC-----------CC----CCCCCSSEEEE--EEE-ETTEEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCcccccccccceeEE--EEE-eCCEEEEEEECCCCHh
Confidence 5678999999999999999999996 122222 344444332 222 2223588999999743
No 167
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.21 E-value=3.7e-07 Score=90.89 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=40.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEE--EccCCcEEEEEcCCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFK--IAHRPSIYVLDTPGVLVPS 207 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~--i~~~~~~~liDTPGi~~~~ 207 (375)
....+|+|+|.+|||||||+|+|.+ ...+.++..+|+|.+..... +.....+.++||||.....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~-----------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG-----------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc-----------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence 4568999999999999999999996 23456678899998876433 3333368999999997643
No 168
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.21 E-value=2.1e-06 Score=74.78 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVL 204 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~ 204 (375)
...++|+|+|.+|||||||+|+|.+. .......+..|.+.. .+.. ....+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG----------QFNEDMIPTVGFNMR--KITK-GNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEE--EEEE-TTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC----------CCCCccCCCCceeEE--EEEe-CCEEEEEEECCCCH
Confidence 45789999999999999999999961 011122233333322 2222 22358899999964
No 169
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=7.8e-07 Score=75.33 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=64.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc---c---CCCCEEEEEEcCCCCChhhH--HHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---L---SAKRRVIALNKKDLANPNIL--NKWVRH 96 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~---~~kp~IiVlNK~DL~~~~~~--~~~~~~ 96 (375)
..||+.. ........++.+|++++|+|+..+.+.. ...+..+ . .+.|+++|+||+|+.+.... .....+
T Consensus 57 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~ 135 (172)
T 2erx_A 57 DTTGSHQ-FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 135 (172)
T ss_dssp ECCSCSS-CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred ECCCchh-hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH
Confidence 4677632 1123345678999999999998653221 1122222 1 46899999999999754221 122223
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
....+.+++.+|++++.|++++++++.+.+.
T Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 136 ARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 3344678899999999999999999877653
No 170
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.20 E-value=3e-06 Score=73.00 Aligned_cols=25 Identities=48% Similarity=0.535 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999996
No 171
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.20 E-value=1.6e-06 Score=75.66 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=38.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. ... ...+..|++.....+.+... -.+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK-----------RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS-----------CCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 44689999999999999999999971 111 11122233333333434321 2478999999654
No 172
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.20 E-value=1.6e-06 Score=74.43 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|.+.+ .......+..|.+.. ..+.+... -.+.++||||...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT-----------GSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH-----------SCCCCCSSCSSSEEE-EEEEETTEEEEEEEEECSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh-----------CCCCCcCCCcceeEE-EEEEECCEEEEEEEEECCCCch
Confidence 3568999999999999999999997 111222233332221 12333321 1377899999754
No 173
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.20 E-value=1.2e-06 Score=76.96 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=67.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 63 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (203)
T 1zbd_A 63 DTAGLER-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141 (203)
T ss_dssp EECCSGG-GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH
T ss_pred ECCCchh-hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence 4677732 22334566899999999999976532111 111111 14789999999999976422 222333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 142 HLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp HHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999988776543
No 174
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.20 E-value=1.3e-06 Score=76.14 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=67.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc---cCCCCEEEEEEcCCCCChhh-HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ---LSAKRRVIALNKKDLANPNI-LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~---~~~kp~IiVlNK~DL~~~~~-~~~~~~~ 96 (375)
-..||+... .......++.+|++|+|+|+..+.+..+ ..+ .+. ..+.|+++|+||+|+.+... .+...++
T Consensus 61 ~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (199)
T 2gf0_A 61 TDTTGSHQF-PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV 139 (199)
T ss_dssp EECCGGGSC-HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred EeCCChHHh-HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH
Confidence 346776421 1233456789999999999976432111 111 121 13689999999999986432 2222333
Q ss_pred HhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
....+..++.+||+++.|++++++++.+.+..
T Consensus 140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 140 AQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 33446788999999999999999999877643
No 175
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.19 E-value=2.6e-06 Score=75.06 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHh
Confidence 4678999999999999999999997
No 176
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.19 E-value=1.8e-06 Score=73.22 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|+|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999985
No 177
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.19 E-value=1.6e-06 Score=76.52 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
....+|+++|.+|||||||+|+|.+ .+.....+..|.+.. .+.+.+ -.+.++||||...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~~~--~~~~~~-~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTSE--ELTIAG-MTFTTFDLGGHIQ 81 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSCE--EEEETT-EEEEEEEECC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCCCCceeE--EEEECC-EEEEEEECCCcHh
Confidence 4567999999999999999999986 122233334444432 233333 3588999999654
No 178
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.19 E-value=3.3e-06 Score=72.12 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=59.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHhhC-------C--CcEEEEec
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANPNILNKWVRHFDSC-------K--QDYIAINA 109 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-------g--~~vi~iSa 109 (375)
..+..+|++|+|+|+..+....... +... ..+.|+++|+||+|+.+.. .......+... + .+++.+||
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 3467899999999998754332211 2222 3578999999999998642 12222222211 1 36889999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+++.|++++++++.+.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhh
Confidence 9999999999998877654
No 179
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=2.2e-06 Score=74.79 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4678999999999999999999996
No 180
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.19 E-value=1.8e-06 Score=73.47 Aligned_cols=103 Identities=15% Similarity=-0.084 Sum_probs=62.5
Q ss_pred cccchhHHHHHHHH-HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187 26 NWFPGHMAAATRAI-KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVR 95 (375)
Q Consensus 26 ~wfpgHm~k~~~~i-~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~ 95 (375)
-..||+.....+.+ ...+..+|++++|+|+..+.+-.+ ..+..+ ..++|+++|+||+|+.+... .+....
T Consensus 57 ~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 136 (175)
T 2nzj_A 57 VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA 136 (175)
T ss_dssp ECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred EecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH
Confidence 34788754211222 345678999999999976532111 111111 13689999999999975422 222223
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+....+.+++.+||+++.|++++++++.+.+..
T Consensus 137 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 137 CAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 333446789999999999999999999877654
No 181
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.19 E-value=2.5e-06 Score=72.10 Aligned_cols=101 Identities=15% Similarity=0.000 Sum_probs=58.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. ........+..+|++++|+|+..+.+-.+ ..+..+ ..+.|+++|+||+|+.+... .+....+.
T Consensus 55 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 133 (166)
T 3q72_A 55 DIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 133 (166)
T ss_dssp ECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH
T ss_pred ECCCCcc-chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH
Confidence 4677643 22233456789999999999986532111 111111 24689999999999985432 12222333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
...+.+++.+||+++.|++++++++.+.+..
T Consensus 134 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 134 VVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp HHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999877643
No 182
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.19 E-value=1e-06 Score=76.64 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=38.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+ .......+..|.+.. .+... ...+.++||||...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL-----------GDVVTTVPTVGVNLE--TLQYK-NISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC-----------SCCEEECSSTTCCEE--EEEET-TEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc-----------CCCCCcCCCCceEEE--EEEEC-CEEEEEEECCCCHh
Confidence 4678999999999999999999975 111222233333322 22232 33688999999754
No 183
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=2.5e-06 Score=74.36 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=67.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+. +........++.+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+....+.+
T Consensus 78 Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 156 (191)
T 3dz8_A 78 DTAGQE-RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE 156 (191)
T ss_dssp CHHHHH-HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred eCCChH-HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 468864 333445567899999999999976422111 111111 14789999999999964321 122222333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+..++.+||+++.|++++++++.+.+.+
T Consensus 157 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 157 QLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999998877654
No 184
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.18 E-value=9.3e-07 Score=77.64 Aligned_cols=102 Identities=15% Similarity=0.027 Sum_probs=59.7
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCC-hhh--HHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLAN-PNI--LNKW 93 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~-~~~--~~~~ 93 (375)
-..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+ ... .+..
T Consensus 78 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~ 156 (208)
T 2yc2_C 78 LDTAGSDL-YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA 156 (208)
T ss_dssp EETTTTHH-HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred EECCCcHH-HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence 44788843 22334456789999999999976543111 112222 1 4789999999999976 321 2344
Q ss_pred HHHHhhCCCcEEEEecCC-ccCHHHHHHHHHHHHhh
Q 017187 94 VRHFDSCKQDYIAINAHS-RSSVQKLLELVELKLKE 128 (375)
Q Consensus 94 ~~~~~~~g~~vi~iSa~~-~~gvk~Ll~~L~~~l~~ 128 (375)
.++.+..+..++.+||++ +.|++++++++.+.+.+
T Consensus 157 ~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 444555677899999999 99999999988776543
No 185
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.18 E-value=2e-06 Score=74.81 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=38.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|+|.+.. .......+..|.+. ..+.+. +..+.++||||...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~---------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN---------AQSQNILPTIGFSI--EKFKSS-SLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG---------GCCSSCCCCSSEEE--EEEECS-SCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC---------CCCCCcCCccceeE--EEEEEC-CEEEEEEECCCCHH
Confidence 457899999999999999999998611 00122222223222 123333 34689999999654
No 186
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.18 E-value=3e-06 Score=73.56 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEECcCCCCHHHHHHHHHc
Confidence 3458999999999999999999996
No 187
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.18 E-value=1.3e-06 Score=75.49 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=68.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... ..+..++..
T Consensus 65 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 143 (186)
T 2bme_A 65 DTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 143 (186)
T ss_dssp EECCSGG-GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred eCCCcHH-HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 4677632 22334566889999999999976533211 111111 24689999999999964321 233444444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 144 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 144 ENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 567789999999999999999998776654
No 188
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.18 E-value=9.8e-07 Score=78.61 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC--cEEEEEcCCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP--SIYVLDTPGVLVP 206 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~--~~~liDTPGi~~~ 206 (375)
...++|+|+|.+|||||||+|+|.+. .......+..|++.....+....+. .+.++||||....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG----------RFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC----------STTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC----------CCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 45789999999999999999999861 1123334445555544433332221 3789999997543
No 189
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=8.2e-07 Score=77.54 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGV 203 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi 203 (375)
...++|+|+|.+|||||||+|+|.+.. ......+..|++.....+.+.... .+.++||||.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT----------FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT----------TCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC----------CCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 456899999999999999999999711 011111223444444444343322 4889999994
No 190
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.17 E-value=1.8e-06 Score=75.08 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=65.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHh---hc--cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQ---PQ--LSAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~---~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-..||+...........++++|++|+|+|+..+.+... ..+. +. ..+.|+++|+||+|+.+... .+...++
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 153 (189)
T 1z06_A 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 153 (189)
T ss_dssp EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHH
Confidence 34788754321344567899999999999976433211 1111 21 24689999999999975422 2222333
Q ss_pred HhhCCCcEEEEecCCc---cCHHHHHHHHHHHH
Q 017187 97 FDSCKQDYIAINAHSR---SSVQKLLELVELKL 126 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~---~gvk~Ll~~L~~~l 126 (375)
....+..++.+|++++ .+++++++++.+.+
T Consensus 154 ~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 154 ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 3355678999999999 89999988876554
No 191
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.17 E-value=1.8e-06 Score=72.99 Aligned_cols=100 Identities=15% Similarity=0.005 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ....|+++|.||+|+.+... .+....+..
T Consensus 61 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~ 139 (170)
T 1z0j_A 61 DTAGLER-FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD 139 (170)
T ss_dssp EECCSGG-GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCCchh-hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHH
Confidence 4677632 22233466789999999999976543221 111111 24578899999999975322 222333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 140 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 55678999999999999999999877653
No 192
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.17 E-value=2.3e-06 Score=74.26 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=63.9
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hh---Hhhcc--CCCCEEEEEEcCCCCChhh-HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PG---LQPQL--SAKRRVIALNKKDLANPNI-LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~---l~~~~--~~kp~IiVlNK~DL~~~~~-~~~~~~~~ 97 (375)
-..||+.. ........+..+|++++|+|+..+.+..+ .. +.... .+.|+++|+||+|+.+... .+...++.
T Consensus 74 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 152 (190)
T 3con_A 74 LDTAGQEE-YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152 (190)
T ss_dssp EECCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH
T ss_pred EECCChHH-HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH
Confidence 34788742 22334567899999999999976532111 11 11111 3689999999999976322 22333334
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+.+++.+|++++.|++++++++.+.+.+
T Consensus 153 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 153 KSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4456789999999999999999999877654
No 193
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.17 E-value=6.2e-07 Score=77.34 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
..++|+++|.+|||||||+|+|.+. .......|+++.+.. .+.+.+. -.+.++||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED------------AFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC------------CCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 4689999999999999999999861 111122233444433 2333221 2478999999643
No 194
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.17 E-value=4.1e-06 Score=74.16 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|++.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 5679999999999999999999996
No 195
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.17 E-value=4.1e-06 Score=70.12 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=65.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c--CCCCEEEEEEcCCCCChhhH-HHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L--SAKRRVIALNKKDLANPNIL-NKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~--~~kp~IiVlNK~DL~~~~~~-~~~~~~~~ 98 (375)
..||+.. ........+..+|.+++|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+.... +...++.+
T Consensus 57 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (166)
T 2ce2_X 57 DTAGQEE-YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR 135 (166)
T ss_dssp ECCCCSS-CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH
T ss_pred ECCCchh-hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH
Confidence 3667532 11223356789999999999876432111 111111 1 27899999999999864322 23333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+.+.+++.+|++++.|++++++++.+.+.
T Consensus 136 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999887654
No 196
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.17 E-value=2.7e-06 Score=72.75 Aligned_cols=102 Identities=13% Similarity=-0.094 Sum_probs=62.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh---HHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI---LNK 92 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~---~~~ 92 (375)
-..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+... .+.
T Consensus 63 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~ 141 (182)
T 1ky3_A 63 WDTAGQER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS 141 (182)
T ss_dssp ECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH
T ss_pred EECCCChH-hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH
Confidence 34788643 22233456789999999999976533211 111111 1 5689999999999964321 222
Q ss_pred HHHHHh-hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 93 WVRHFD-SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 93 ~~~~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..++.+ ..+.+++.+||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 142 AQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 223332 245688999999999999999998776543
No 197
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=3.7e-06 Score=73.64 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999997
No 198
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.16 E-value=2.3e-06 Score=73.16 Aligned_cols=102 Identities=15% Similarity=0.015 Sum_probs=66.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhcc------CCCC-EEEEEEcCCCCChhh--HHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQL------SAKR-RVIALNKKDLANPNI--LNKWV 94 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~~------~~kp-~IiVlNK~DL~~~~~--~~~~~ 94 (375)
-..||+.. ........++++|++|+|+|+..+.+..+ ..+..+. ...| +++|+||+|+.+... .+...
T Consensus 61 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~ 139 (178)
T 2hxs_A 61 WDIGGQTI-GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHL 139 (178)
T ss_dssp EECTTCCT-TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred EECCCCcc-ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHH
Confidence 34677632 12223456889999999999986543211 1111111 2566 789999999975321 22333
Q ss_pred HHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 RHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 ~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+..+.+++.+||+++.|++++++++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 140 RFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3334456789999999999999999999877654
No 199
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=76.14 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=59.6
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhH---------
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNIL--------- 90 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~--------- 90 (375)
-..||+.. ........+..+|++|+|+|+..+.+-.+ ..+..+ ..+.|+++|+||+|+.+....
T Consensus 87 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 87 WDTAGQDD-YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp EEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTC
T ss_pred EECCCchh-hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccccc
Confidence 34788642 22223456789999999999976533211 011111 247899999999999865322
Q ss_pred -----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 91 -----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 91 -----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++..++.+..+. .++.+||+++.|++++++.+.+.+.+
T Consensus 166 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 122233334455 78999999999999999998877644
No 200
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.16 E-value=2.8e-06 Score=83.91 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=77.2
Q ss_pred HhcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEE
Q 017187 8 KKGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALN 80 (375)
Q Consensus 8 ~~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlN 80 (375)
.+|+++........... +-..|||.. ..+.+...+..+|++|+|+|++.+........... ..+.| +++|+|
T Consensus 58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviN 136 (405)
T 2c78_A 58 ARGITINTAHVEYETAKRHYSHVDCPGHAD-YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMN 136 (405)
T ss_dssp HHTCCCSCEEEEEECSSCEEEEEECCCSGG-GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HcCCCEEeeeeEeccCCeEEEEEECCChHH-HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEE
Confidence 45665554444443322 445899953 45667788999999999999987654322222222 34677 789999
Q ss_pred cCCCCC-hhhHH----HHHHHHhhCC-----CcEEEEecCCccC------------------HHHHHHHHHHHHhh
Q 017187 81 KKDLAN-PNILN----KWVRHFDSCK-----QDYIAINAHSRSS------------------VQKLLELVELKLKE 128 (375)
Q Consensus 81 K~DL~~-~~~~~----~~~~~~~~~g-----~~vi~iSa~~~~g------------------vk~Ll~~L~~~l~~ 128 (375)
|+|+.+ ++..+ +..+++...+ .+++++||+++.+ +.+|++.+...++.
T Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 137 KVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred CccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 999984 32221 2333443333 5789999998876 77888888776653
No 201
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.16 E-value=2e-06 Score=72.57 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=67.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 99 (375)
..||+.. ........++.+|++++|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+...++.+.
T Consensus 60 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 138 (168)
T 1z2a_A 60 DTAGQEE-FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR 138 (168)
T ss_dssp CCTTGGG-TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred cCCCcHh-HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence 5677632 11223466789999999999976532211 111222 24789999999999975321 2333344445
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+.+++.+|++++.|++++++++.+.+.
T Consensus 139 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 139 LKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred cCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 5778999999999999999999877653
No 202
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.16 E-value=2.9e-06 Score=74.02 Aligned_cols=101 Identities=12% Similarity=-0.004 Sum_probs=66.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 76 Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 154 (191)
T 2a5j_A 76 DTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154 (191)
T ss_dssp CCTTGGG-TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCchh-hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH
Confidence 4677632 11223466789999999999976432211 111122 23689999999999975321 223333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+..++.+||+++.|++++++++.+.+.+
T Consensus 155 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 155 EHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp HHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 556789999999999999999998776644
No 203
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.15 E-value=5.5e-06 Score=74.63 Aligned_cols=89 Identities=18% Similarity=0.090 Sum_probs=60.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCch----hHhhcc---CCCCEEEEEEcCCCCChhhH-----HHHHHHHhhCC--CcEE
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHP----GLQPQL---SAKRRVIALNKKDLANPNIL-----NKWVRHFDSCK--QDYI 105 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~----~l~~~~---~~kp~IiVlNK~DL~~~~~~-----~~~~~~~~~~g--~~vi 105 (375)
......+|++|+|+|+..+.+.... .+..+. .+.|+++|+||+|+.+.... ....++....+ ..++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 3456788999999999877553321 122221 37899999999999864322 12223333344 6789
Q ss_pred EEecCCccCHHHHHHHHHHHHhh
Q 017187 106 AINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+||+++.|++++++++.+.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999998877654
No 204
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.15 E-value=3.6e-06 Score=73.50 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 4578999999999999999999997
No 205
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=1.8e-06 Score=75.67 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=68.0
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH---hhc--cCCCCEEEEEEcCCCCChhh--HHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL---QPQ--LSAKRRVIALNKKDLANPNI--LNKWVRH 96 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l---~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~ 96 (375)
-..||+.. .......+..+|++|+|+|+..+.+..+ ..+ .+. ..+.|+++|+||+|+.+... .+...++
T Consensus 81 ~Dt~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 81 LDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp EECCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EECCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 34677754 2334567889999999999986533211 111 121 24789999999999975321 2223333
Q ss_pred HhhCCCcEEEEecCCcc-CHHHHHHHHHHHHhh
Q 017187 97 FDSCKQDYIAINAHSRS-SVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~vi~iSa~~~~-gvk~Ll~~L~~~l~~ 128 (375)
.+..+.+++.+||+++. |++++++++.+.+.+
T Consensus 159 ~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 159 ATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 33446788999999999 999999998876644
No 206
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=76.48 Aligned_cols=101 Identities=12% Similarity=-0.010 Sum_probs=64.7
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCCh-------hh-HH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANP-------NI-LN 91 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~-------~~-~~ 91 (375)
-..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+||.+. .. .+
T Consensus 82 ~Dt~G~~~-~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~ 160 (199)
T 2p5s_A 82 WDTAGQER-FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGH 160 (199)
T ss_dssp EECTTCTT-CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHH
T ss_pred EECCCCcc-hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHH
Confidence 34677642 22334567889999999999976533221 111111 246899999999999631 11 11
Q ss_pred HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 92 KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 92 ~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
...++....+.+++.+||+++.|++++++++.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 161 FGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222333345678899999999999999999877653
No 207
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=3e-06 Score=73.86 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=63.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh-----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI----------- 89 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~----------- 89 (375)
..||+... .......++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+...
T Consensus 72 D~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 150 (194)
T 2atx_A 72 DTAGQEDY-DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 150 (194)
T ss_dssp CCCCSSSS-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred ECCCCcch-hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence 46666321 1122345789999999999976533211 111222 34789999999999976421
Q ss_pred ---HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187 90 ---LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 90 ---~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.++..++.+..+. .++.+||+++.|++++++++.+.+
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1222233333455 789999999999999999987654
No 208
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.15 E-value=2.9e-06 Score=74.41 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|.|.+. . .....++||.+... +.+... -.+.++||||...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN-----------G--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC-----------C--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 56789999999999999999999961 1 11222334433222 222221 1366999999854
No 209
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.15 E-value=8.3e-07 Score=89.34 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=64.2
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHH
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQ 116 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk 116 (375)
++....+..+|++|+|+|+..+.+.....+.+....+|+++|+||+|+.+....... +.+ ..+.+++.+|++++.|++
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQGID 372 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBSHH
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCCHH
Confidence 445567889999999999988776555445444556899999999999876443211 001 124578999999999999
Q ss_pred HHHHHHHHHHhh
Q 017187 117 KLLELVELKLKE 128 (375)
Q Consensus 117 ~Ll~~L~~~l~~ 128 (375)
+|++.+.+.+..
T Consensus 373 eL~~~i~~~~~~ 384 (462)
T 3geh_A 373 SLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999877643
No 210
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.15 E-value=2.1e-06 Score=74.60 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=61.8
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
...++.+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+...++.+..+.+++.+||++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE 168 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 356789999999999976532211 111222 14789999999999975322 2233333344567899999999
Q ss_pred ccCHHHHHHHHHHHHhh
Q 017187 112 RSSVQKLLELVELKLKE 128 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~ 128 (375)
+.|++++++++.+.+.+
T Consensus 169 g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 169 NINVKQVFERLVDVICE 185 (189)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999877654
No 211
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.15 E-value=3e-06 Score=75.43 Aligned_cols=101 Identities=12% Similarity=-0.005 Sum_probs=65.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhhc----cCCCCEEEEEEcCCCCChhh-HH-HHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQPQ----LSAKRRVIALNKKDLANPNI-LN-KWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~~----~~~kp~IiVlNK~DL~~~~~-~~-~~~~~~~ 98 (375)
..||+.... ......+..+|++|+|+|+..+.+..+. .+..+ ..++|+++|+||+|+.+... .. ....+..
T Consensus 67 Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 145 (218)
T 4djt_A 67 DTAGQEKKA-VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLK 145 (218)
T ss_dssp EECSGGGTS-CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTT
T ss_pred ecCCchhhc-hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 456653221 1223457889999999999865432211 11111 23589999999999986522 22 2333444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 GKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 567789999999999999999999877654
No 212
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.14 E-value=2.6e-06 Score=72.83 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=66.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 99 (375)
..||+... .......+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... ......+...
T Consensus 64 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (181)
T 3tw8_B 64 DTAGQERF-RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ 142 (181)
T ss_dssp EETTGGGC-SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred cCCCchhh-hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHH
Confidence 46775321 1122345789999999999987532211 011111 34689999999999875432 2233333344
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+.+++.+||+++.|++++++++.+.+..
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 143 MGIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999998877654
No 213
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.14 E-value=4.7e-06 Score=86.31 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=72.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCC
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPNILNKWVRHFD-SCK 101 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g 101 (375)
+-.-|||... ...+...+..+|.+|+|+|+..+.+...... ... ..+.|+++|+||+|+.+... ....+.+. ..+
T Consensus 77 liDTPGh~dF-~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg 154 (600)
T 2ywe_A 77 LIDTPGHVDF-SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLG 154 (600)
T ss_dssp EECCCCSGGG-HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSC
T ss_pred EEECCCcHhH-HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhC
Confidence 4468999653 3456677899999999999987654322211 111 45789999999999976432 22222232 223
Q ss_pred C---cEEEEecCCccCHHHHHHHHHHHHhhh
Q 017187 102 Q---DYIAINAHSRSSVQKLLELVELKLKEV 129 (375)
Q Consensus 102 ~---~vi~iSa~~~~gvk~Ll~~L~~~l~~~ 129 (375)
. +++++||+++.|+++|++++.+.++..
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 3 589999999999999999998888653
No 214
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.14 E-value=2.9e-06 Score=73.92 Aligned_cols=100 Identities=13% Similarity=-0.021 Sum_probs=66.5
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhh
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDS 99 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 99 (375)
.||+.. ........++.+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+||.+... ......+...
T Consensus 81 t~G~~~-~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 159 (193)
T 2oil_A 81 TAGLER-YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159 (193)
T ss_dssp ESCCCT-TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCchh-hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH
Confidence 566522 11223456789999999999976533211 112222 24678999999999975321 2333344445
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+..++.+||+++.|++++++++.+.+.+
T Consensus 160 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 160 NGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999999998776643
No 215
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.6e-06 Score=76.48 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=37.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccccccc-ccCCCCCeeeeeEEEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRA-TVGPLPGVTQDIAGFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~-~v~~~pg~T~~~~~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. ... ...+..|++.....+.+... -.+.++||||...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN-----------EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC-----------CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC-----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 34589999999999999999999971 111 11122222222223333321 2478999999654
No 216
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.14 E-value=3e-06 Score=72.38 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=66.7
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
..||+.. ........++.+|++++|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... ......+.
T Consensus 63 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 141 (181)
T 2fn4_A 63 DTAGQEE-FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG 141 (181)
T ss_dssp ECCCTTT-TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred ECCCchh-hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 3666532 11223456789999999999976432111 111121 24689999999999975322 12233333
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
...+..++.+||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 142 ASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 3557789999999999999999999877754
No 217
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=2.3e-06 Score=74.76 Aligned_cols=101 Identities=15% Similarity=-0.002 Sum_probs=68.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+.. ..+...++.+
T Consensus 78 Dt~G~~~-~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~ 156 (192)
T 2fg5_A 78 DTAGQER-FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156 (192)
T ss_dssp EECCSGG-GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred cCCCchh-hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 4677632 22233467889999999999976533211 111111 1368999999999997432 2334445555
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.+.+++.+||+++.|++++++++.+.+.+
T Consensus 157 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 157 SIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 667789999999999999999999876543
No 218
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.12 E-value=2.3e-06 Score=76.21 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
....+++++|.+|||||||+|+|.+.. .....++..|+++... ....+.++||||...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~---------~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS---------VRPTVVSQEPLSAADY------DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS---------CCCBCCCSSCEEETTG------GGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---------CCCeeeecCceEEEEe------eCceEEEEECCCcHH
Confidence 456899999999999999999999710 0112223344444432 223589999999854
No 219
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.12 E-value=2e-06 Score=73.86 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=63.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..|||.. ........++++|++++|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+....
T Consensus 62 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v 140 (182)
T 3bwd_D 62 DTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPI 140 (182)
T ss_dssp CCCC-CT-TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred ECCCChh-hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCC
Confidence 4666532 11122345788999999999976533211 111111 247899999999999754321
Q ss_pred --HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187 91 --NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 91 --~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+...++.+..+. +++.+||+++.|++++++.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 222233333454 789999999999999999987654
No 220
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.12 E-value=2.6e-06 Score=73.36 Aligned_cols=102 Identities=11% Similarity=-0.012 Sum_probs=58.8
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
-..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+||.+... .+...++.
T Consensus 62 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 140 (183)
T 2fu5_C 62 WDTAGQER-FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 140 (183)
T ss_dssp EEC----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred EcCCCChh-hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence 34788742 22223355789999999999987533111 111111 13689999999999975321 22333344
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+.+++.+||+++.|++++++++.+.+.+
T Consensus 141 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 141 LDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp HHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4556789999999999999999998776654
No 221
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.11 E-value=9.5e-07 Score=79.07 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=66.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCK 101 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g 101 (375)
..||+.. ........+.++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+||.+.........+.+..+
T Consensus 70 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (221)
T 3gj0_A 70 DTAGQEK-FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 148 (221)
T ss_dssp EECSGGG-TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT
T ss_pred eCCChHH-HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC
Confidence 3567532 11123356779999999999986533211 111122 34789999999999976543323223333456
Q ss_pred CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 102 QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 102 ~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..++.+||+++.|++++++++.+.+..
T Consensus 149 ~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 149 LQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp CEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999988776543
No 222
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.11 E-value=3.9e-06 Score=73.98 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=66.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+...++..
T Consensus 63 Dt~G~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 141 (206)
T 2bcg_Y 63 DTAGQER-FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141 (206)
T ss_dssp CCTTTTT-TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred eCCChHH-HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 4667532 11122345789999999999976533211 111121 24688999999999986422 223333334
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+.+++.+||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 567789999999999999999999877654
No 223
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.11 E-value=1.3e-06 Score=73.77 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=65.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCCh----hhH-HHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANP----NIL-NKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~----~~~-~~~~~ 95 (375)
..||+.. ........++++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+. ... +...+
T Consensus 58 D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~ 136 (170)
T 1ek0_A 58 DTAGQER-FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136 (170)
T ss_dssp EECCSGG-GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHH
T ss_pred ECCCChh-hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHH
Confidence 4677632 22234567889999999999987533211 112222 246889999999999753 111 22223
Q ss_pred HHhhCCCcEEEEecCCccCHHHHHHHHHHHH
Q 017187 96 HFDSCKQDYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 96 ~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+....+.+++.+||+++.|++++++++.+.+
T Consensus 137 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3334567899999999999999999887554
No 224
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=75.77 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|.|.+.. ......|++|.+.. .+.+... -.+.++||||...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQ------------GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEE------------CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhcc------------CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 457899999999999999999997510 11112334443332 2333321 1367789999853
No 225
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.11 E-value=3.4e-06 Score=74.49 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|.|.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 4468999999999999999999986
No 226
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=2e-05 Score=76.42 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred HhhhcCeEEEEEeCCCCCCCC-c---hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccC
Q 017187 42 RLKISDLVIEVRDSRIPLSSA-H---PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSS 114 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~-~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~g 114 (375)
....+|.+++|+|+..+.... . ..+..+ ..++|+++|+||+|+.+........+++...+.+++.+||+++.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 345699999999987543211 1 112222 237999999999999887655555555555667889999999999
Q ss_pred HHHHHHHHHHHHhh
Q 017187 115 VQKLLELVELKLKE 128 (375)
Q Consensus 115 vk~Ll~~L~~~l~~ 128 (375)
++++++++.+.+..
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 227
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.10 E-value=3.5e-06 Score=74.22 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999997
No 228
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.10 E-value=3.4e-06 Score=74.35 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=69.2
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
-..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... ..+..++.
T Consensus 79 ~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 157 (200)
T 2o52_A 79 WDTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFA 157 (200)
T ss_dssp ECCTTHHH-HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EcCCCcHh-HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHH
Confidence 45788742 22224456889999999999976533211 112222 24689999999999964322 23344444
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+..++.+||+++.|++++++++.+.+..
T Consensus 158 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 158 QENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5567789999999999999999998776644
No 229
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.10 E-value=4.8e-06 Score=88.25 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=32.1
Q ss_pred EecCCccCHHHHHHHHHHHHh---hhh--ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 107 INAHSRSSVQKLLELVELKLK---EVI--SREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 107 iSa~~~~gvk~Ll~~L~~~l~---~~~--~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++..+.|+++++..+.+... ..+ ....-.+|+|+|.+|+|||||+|+|.+
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 344455666666666555443 322 123456999999999999999999997
No 230
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.10 E-value=2.6e-06 Score=72.13 Aligned_cols=100 Identities=14% Similarity=-0.054 Sum_probs=64.8
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+... .......++++|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+... .+...++.+
T Consensus 61 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1z08_A 61 DTAGQERF-HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 139 (170)
T ss_dssp ECCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred ECCCcHhh-hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence 57887432 2223345789999999999876532111 111111 24689999999999975321 223334444
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..+.+++.+||+++.|++++++++.+.+.
T Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 55778999999999999999999877654
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.10 E-value=2.9e-06 Score=74.88 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=61.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC--chhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA--HPGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~--~~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 99 (375)
..||+... .......++.+|++++|+|+..+.+-. ...+.++ ..+.|+++|+||+|+......++..+++..
T Consensus 75 Dt~G~~~~-~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 75 DLGGHIQA-RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153 (198)
T ss_dssp EECC-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred ECCCcHhh-HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence 35776421 112234678999999999998653211 1122222 246899999999999753223333444321
Q ss_pred -----------------CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 100 -----------------CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 100 -----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.+.+++.+||+++.|++++++++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23468899999999999999988643
No 232
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.09 E-value=4.6e-06 Score=82.17 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=68.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCC-hhhH----HHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLAN-PNIL----NKWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~-~~~~----~~~~~~ 96 (375)
+-..|||.. ..+.+...+..+|++|+|+|++............. ..+.| +++|+||+|+.+ ++.. ++..++
T Consensus 70 iiDtpG~~~-f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~ 148 (397)
T 1d2e_A 70 HTDCPGHAD-YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIREL 148 (397)
T ss_dssp EEECSSHHH-HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred EEECCChHH-HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 445899954 45567778899999999999987643322111111 34677 689999999985 3221 233344
Q ss_pred HhhCC-----CcEEEEecCCccC----------HHHHHHHHHHHHhh
Q 017187 97 FDSCK-----QDYIAINAHSRSS----------VQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g-----~~vi~iSa~~~~g----------vk~Ll~~L~~~l~~ 128 (375)
+++.+ .+++++||+++.+ +.+|++.+.+.++.
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 44333 4789999988653 88888888877654
No 233
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.09 E-value=3.3e-06 Score=74.87 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=61.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc-------cCCCCEEEEEEcCCCCChhhHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ-------LSAKRRVIALNKKDLANPNILNKWV 94 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~-------~~~kp~IiVlNK~DL~~~~~~~~~~ 94 (375)
+-..|||..-...-....+..+|++|+|+|+..+..+... .+.+. ..+.|+++|+||+||.+........
T Consensus 58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (214)
T 2fh5_B 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQ 137 (214)
T ss_dssp EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred EEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHH
Confidence 3458898643222344568999999999998752111111 11111 1357999999999998653322222
Q ss_pred HHHh-------------------------------------hC--CCcEEEEecCCc------cCHHHHHHHHHHH
Q 017187 95 RHFD-------------------------------------SC--KQDYIAINAHSR------SSVQKLLELVELK 125 (375)
Q Consensus 95 ~~~~-------------------------------------~~--g~~vi~iSa~~~------~gvk~Ll~~L~~~ 125 (375)
+.+. .. +..++.+||+++ .|++++.+++.+.
T Consensus 138 ~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 138 QQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1111 00 345788999999 9999999988754
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.09 E-value=2.4e-06 Score=74.84 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=63.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS 99 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~ 99 (375)
..|||... .......++.+|++|+|+|+..+.+-.+ ..+... ..+.|+++|+||+|+.+....++..+++..
T Consensus 73 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 151 (190)
T 1m2o_B 73 DLGGHIQA-RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL 151 (190)
T ss_dssp ECCCSGGG-TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTC
T ss_pred ECCCCHHH-HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCC
Confidence 36776431 1122345789999999999987533211 112222 256899999999999764333444444432
Q ss_pred ------------CCCcEEEEecCCccCHHHHHHHHHH
Q 017187 100 ------------CKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 100 ------------~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
.+.+++.+||+++.|++++++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 152 LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 2346889999999999999988754
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.08 E-value=1.8e-06 Score=73.67 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=54.3
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L 118 (375)
.++|++++|+|+..... ....+... ..++|+++|.||+|+.... ..+.+.+ ..+.+++.+||+++.|++++
T Consensus 80 ~~~~~~i~v~D~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATALER-NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCHHH-HHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCchhH-hHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---HhCCCEEEEEcCCCCCHHHH
Confidence 58999999999875211 11122222 2478999999999986432 1223332 33567899999999999999
Q ss_pred HHHHHHHH
Q 017187 119 LELVELKL 126 (375)
Q Consensus 119 l~~L~~~l 126 (375)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (165)
T 2wji_A 156 KKAISIAV 163 (165)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987654
No 236
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.08 E-value=4.3e-06 Score=71.37 Aligned_cols=100 Identities=13% Similarity=-0.020 Sum_probs=66.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI-LNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~-~~~~~~ 95 (375)
..||+.. ........++.+|++++|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+... .+...+
T Consensus 62 Dt~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~ 140 (177)
T 1wms_A 62 DTAGQER-FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA 140 (177)
T ss_dssp ECCCCGG-GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred eCCCchh-hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHH
Confidence 4677632 22333456789999999999986532211 111111 1 5679999999999974322 223333
Q ss_pred HHh-hCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
+.+ ..+.+++.+||+++.|++++++++.+.+.
T Consensus 141 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 141 WCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333 34568999999999999999999877654
No 237
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.08 E-value=2.9e-06 Score=74.35 Aligned_cols=25 Identities=16% Similarity=0.502 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5678999999999999999999985
No 238
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.08 E-value=4.6e-06 Score=73.44 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhh----ccCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQP----QLSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~----~~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..||+... .......++++|++|+|+|+..+.+-.+ ..+.. ...+.|+++|+||+|+.+....
T Consensus 79 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (201)
T 2gco_A 79 DTAGQEDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157 (201)
T ss_dssp CCCCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred ECCCchhH-HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccC
Confidence 46776321 1112245789999999999876432211 01111 1247899999999999865321
Q ss_pred ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187 91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
+...++.+..+. .++.+||+++.|++++++++.+.+
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 122233334455 788999999999999999987765
No 239
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.08 E-value=7.4e-06 Score=70.13 Aligned_cols=96 Identities=13% Similarity=-0.053 Sum_probs=63.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-----hHhhcc----CCCCEEEEEEcCCCCC---hh-hHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-----GLQPQL----SAKRRVIALNKKDLAN---PN-ILNKW 93 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-----~l~~~~----~~kp~IiVlNK~DL~~---~~-~~~~~ 93 (375)
..||+.. ...++++|++|+|+|+..+.+..+. .+.... .+.|+++|.||+|+.+ .. ..++.
T Consensus 60 Dt~G~~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 133 (178)
T 2iwr_A 60 EEAGAPD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133 (178)
T ss_dssp ECSSSCC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred ECCCCch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence 3677643 3567899999999999865432211 122221 3679999999999942 11 12222
Q ss_pred HHHHhh-CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 94 VRHFDS-CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 94 ~~~~~~-~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++... .+.+++.+||+++.|++++++.+.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 233332 25678999999999999999998776643
No 240
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.07 E-value=3.5e-06 Score=77.79 Aligned_cols=82 Identities=13% Similarity=-0.018 Sum_probs=57.5
Q ss_pred hcCeEEEEEeCCCC--CCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHhh-CCCcEEEEecCCccC
Q 017187 45 ISDLVIEVRDSRIP--LSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFDS-CKQDYIAINAHSRSS 114 (375)
Q Consensus 45 ~~DlVI~VvDar~p--~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~g~~vi~iSa~~~~g 114 (375)
++|++|+|+|+..+ .+-.+ ..+..+ ..+.|+++|.||+||.+....++..++... .+..++.+||+++.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 32211 111221 246899999999999765444444444433 367889999999999
Q ss_pred HHHHHHHHHHHH
Q 017187 115 VQKLLELVELKL 126 (375)
Q Consensus 115 vk~Ll~~L~~~l 126 (375)
++++++++.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 241
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.07 E-value=5.3e-06 Score=72.31 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|.|.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 5678999999999999999999997
No 242
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.07 E-value=4.5e-06 Score=71.71 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||+|+|.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 467999999999999999999986
No 243
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.07 E-value=4.1e-06 Score=72.53 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|.|.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999997
No 244
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.07 E-value=1.1e-06 Score=83.55 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=64.7
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCchhHhhcc--CCCCEEEEEEcCCCCC-hhhHHHHHHHHhh-CCC-cEEEEecCCccC
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQL--SAKRRVIALNKKDLAN-PNILNKWVRHFDS-CKQ-DYIAINAHSRSS 114 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~~--~~kp~IiVlNK~DL~~-~~~~~~~~~~~~~-~g~-~vi~iSa~~~~g 114 (375)
...++.+|++++|+|+.. ++.....+.+.. .++|+++|+||+|+.. ........+.+.+ .+. .++++|++++.+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 345789999999999976 554444444432 3789999999999987 4444455554433 354 689999999999
Q ss_pred HHHHHHHHHHHHhh
Q 017187 115 VQKLLELVELKLKE 128 (375)
Q Consensus 115 vk~Ll~~L~~~l~~ 128 (375)
++.+++.+...+++
T Consensus 162 v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 162 VDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCc
Confidence 99999998876653
No 245
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.07 E-value=3.2e-06 Score=73.81 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=65.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH----hhccCCCCEEEEEEcCCCCChh----hHHHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL----QPQLSAKRRVIALNKKDLANPN----ILNKWVRH 96 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l----~~~~~~kp~IiVlNK~DL~~~~----~~~~~~~~ 96 (375)
..||+.. ........+.++|++|+|+|+..+.+..+ ..+ .....+.|+++|+||+||.+.. ..+...++
T Consensus 77 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (194)
T 3reg_A 77 DTAGQEE-YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL 155 (194)
T ss_dssp EECCSGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHH
T ss_pred ECCCcHH-HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHH
Confidence 4566532 11223346789999999999986533221 111 1113468999999999997531 12233333
Q ss_pred HhhCCCc-EEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCKQD-YIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g~~-vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.+..+.. ++.+||+++.|++++++.+.+.+..
T Consensus 156 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 156 CQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 3344555 8999999999999999998877643
No 246
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.07 E-value=2.6e-06 Score=75.81 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4568999999999999999999996
No 247
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.06 E-value=1.9e-06 Score=83.38 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=68.3
Q ss_pred ccccchhHHHH------HHHHHHHhhhcCeEEEEEeCCCC-----CCCCch---hHhhc---cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMAAA------TRAIKHRLKISDLVIEVRDSRIP-----LSSAHP---GLQPQ---LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~k~------~~~i~~~l~~~DlVI~VvDar~p-----~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~ 87 (375)
+-..||+...+ ..+..+.++++|++|+|+|+... +..... ++..+ ...+|+++|+||+|+.+.
T Consensus 210 l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred EecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 34578865421 13445567889999999999642 111111 12222 247899999999999865
Q ss_pred hh-HHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 88 NI-LNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 88 ~~-~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.. .+.+.+.+. ...+++.+||+++.|+++|++++.+.+.+
T Consensus 290 ~e~~~~l~~~l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 290 AENLEAFKEKLT-DDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHHHHCC-SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh-cCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 32 334444442 12568899999999999999999887754
No 248
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.06 E-value=4.9e-06 Score=73.00 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=21.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....++|+++|.+|||||||+|.+.+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh
Confidence 35678999999999999999998886
No 249
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.06 E-value=4.6e-06 Score=84.29 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=58.5
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCC----chhHhhc------cCCCCEEEEEEcCCCCCh--hhHH-
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSA----HPGLQPQ------LSAKRRVIALNKKDLANP--NILN- 91 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~----~~~l~~~------~~~kp~IiVlNK~DL~~~--~~~~- 91 (375)
+-.-||| .+..+.+...+..+|++|+|+|++.+.+.. ..+..+. ...+|+|+|+||+|+.+. ...+
T Consensus 115 iiDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~ 193 (483)
T 3p26_A 115 IVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE 193 (483)
T ss_dssp EECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHH
T ss_pred EEECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHH
Confidence 4458999 445667778899999999999998753221 1222111 234679999999999862 2222
Q ss_pred ---HHHHHHhhC-----CCcEEEEecCCccCHHH
Q 017187 92 ---KWVRHFDSC-----KQDYIAINAHSRSSVQK 117 (375)
Q Consensus 92 ---~~~~~~~~~-----g~~vi~iSa~~~~gvk~ 117 (375)
.+.+++... +.+++++||+++.|+.+
T Consensus 194 i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 194 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 222333222 34679999999998863
No 250
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.06 E-value=4.7e-06 Score=83.26 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hcccccc----------ccc--------ccccccCCCCCeeeeeEEEEEc-cC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPV----------QEK--------TKRATVGPLPGVTQDIAGFKIA-HR 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~----------~~k--------~~~~~v~~~pg~T~~~~~~~i~-~~ 192 (375)
...++++++|.+|+|||||+|.|+.. +.+.... .++ .........+|+|.+.....+. .+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45689999999999999999999651 1111000 000 0011122346889887643332 23
Q ss_pred CcEEEEEcCCCC
Q 017187 193 PSIYVLDTPGVL 204 (375)
Q Consensus 193 ~~~~liDTPGi~ 204 (375)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 368999999964
No 251
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.05 E-value=3.1e-06 Score=72.71 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..||+... .......+..+|++|+|+|+..+.+..+. .+..+ ..+.|+++|+||+|+.+....
T Consensus 59 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 137 (186)
T 1mh1_A 59 DTAGQEDY-DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137 (186)
T ss_dssp CCCCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred ECCCCHhH-HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccc
Confidence 46777321 11223457899999999999765332111 11111 237899999999999754211
Q ss_pred ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+...++.+..+. +++.+||+++.|++++++.+.+.+.+
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 122233334455 78999999999999999998877643
No 252
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.05 E-value=1.4e-06 Score=76.43 Aligned_cols=25 Identities=44% Similarity=0.468 Sum_probs=7.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEEC----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999996
No 253
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.31 E-value=5.7e-07 Score=79.41 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=63.1
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHhh-c---cCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQP-Q---LSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~~-~---~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..||+.. ........++++|++|+|+|+..+.+..+. .+.. + ..+.|+++|+||+|+.+....
T Consensus 84 Dt~G~~~-~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 3th5_A 84 DTAGQED-YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
Confidence 5777632 223344567899999999999776443321 1211 1 236899999999999754211
Q ss_pred ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187 91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+...++.+..+. +++.+||+++.|++++++.+.+.
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 112222223344 67889999999999998887643
No 254
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=2.4e-06 Score=75.85 Aligned_cols=101 Identities=17% Similarity=0.073 Sum_probs=66.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHh
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFD 98 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~ 98 (375)
..||+.. ........++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+|+.+... .+...++..
T Consensus 81 Dt~G~~~-~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 159 (201)
T 2ew1_A 81 DTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 159 (201)
T ss_dssp EECCSGG-GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred ECCCcHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH
Confidence 4677632 22234456889999999999976532211 112221 24678999999999974321 222333333
Q ss_pred hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 99 SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 99 ~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..+..++.+||+++.|++++++++.+.+.+
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 160 AQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999998776654
No 255
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.04 E-value=1.2e-05 Score=78.46 Aligned_cols=104 Identities=24% Similarity=0.198 Sum_probs=70.6
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch-------hHhhc-cCCCCEEEEEEcCCCCChhhHH--HHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP-------GLQPQ-LSAKRRVIALNKKDLANPNILN--KWV 94 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~-------~l~~~-~~~kp~IiVlNK~DL~~~~~~~--~~~ 94 (375)
+...|.++..+.+.+.+.+..+|++++|+|+..+.+.... .+..+ ..++|+|+|+||+|+.+....+ ...
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence 4445777777778788889999999999999766411111 12222 2578999999999998643111 111
Q ss_pred -HHHhhC---CCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 95 -RHFDSC---KQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 95 -~~~~~~---g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.... +.+++++|++++.|+++|++.+.+.+..
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 111121 2357899999999999999999887755
No 256
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.04 E-value=5.3e-06 Score=72.85 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=66.0
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c-----CCCCEEEEEEcCCCCChhh-HHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L-----SAKRRVIALNKKDLANPNI-LNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~-----~~kp~IiVlNK~DL~~~~~-~~~~~~ 95 (375)
..|||... .......++.+|++|+|+|+..+.+..+ ..+..+ . .+.|+++|+||+|+.+... .+...+
T Consensus 63 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 141 (207)
T 1vg8_A 63 DTAGQERF-QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 141 (207)
T ss_dssp EECSSGGG-SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH
T ss_pred eCCCcHHH-HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHH
Confidence 36776321 1112345789999999999976533211 112221 1 4689999999999985432 223333
Q ss_pred HHh-hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 96 HFD-SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 96 ~~~-~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.. ..+.+++.+||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 142 WCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 333 346689999999999999999998877654
No 257
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.03 E-value=7.1e-06 Score=83.88 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=51.9
Q ss_pred hcccccceEEeeCCC----cccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcC
Q 017187 9 KGLGLGEMGFTKGGG----NINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKK 82 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~----~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~ 82 (375)
+|+++.......... ++-.-|||.. ....+...+..+|.+|+|+|+..+.......+.+. ..++|+++|+||+
T Consensus 66 ~GiTi~~~~~~~~~~~~~i~liDTPG~~d-f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~ 144 (528)
T 3tr5_A 66 RGISVTTSVMQFPYKDYLINLLDTPGHAD-FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKM 144 (528)
T ss_dssp HCCSSSSSEEEEEETTEEEEEECCCCSTT-CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CCeeEEEeEEEEEeCCEEEEEEECCCchh-HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 555554444333322 2345799843 33456778999999999999988665443333332 3578999999999
Q ss_pred CCCCh
Q 017187 83 DLANP 87 (375)
Q Consensus 83 DL~~~ 87 (375)
|+...
T Consensus 145 Dl~~~ 149 (528)
T 3tr5_A 145 DRDTR 149 (528)
T ss_dssp TSCCS
T ss_pred CCccc
Confidence 99754
No 258
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.03 E-value=1.4e-05 Score=78.19 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=75.3
Q ss_pred hcccccceEEeeCC--Cc--ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCE-EEEEE-
Q 017187 9 KGLGLGEMGFTKGG--GN--INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRR-VIALN- 80 (375)
Q Consensus 9 ~~~~~g~~~~~~~~--~~--~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~-IiVlN- 80 (375)
+|++++........ .+ +-.-|||. +..+.+...+..+|++|+|+| +.....+....... ..+.|. |+|+|
T Consensus 44 ~giTi~~~~~~~~~~~~~i~iiDtPGh~-~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNN 121 (370)
T 2elf_A 44 KGTSSDITMYNNDKEGRNMVFVDAHSYP-KTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTR 121 (370)
T ss_dssp EEEESSSEEEEECSSSSEEEEEECTTTT-TCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEeeEEEEecCCeEEEEEECCChH-HHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45544444433333 22 34589994 445667778899999999999 64432211111111 346787 99999
Q ss_pred cCCCCChhhHH----HHHHHHhhC---CCcEEE--EecCC---ccCHHHHHHHHHHHHhh
Q 017187 81 KKDLANPNILN----KWVRHFDSC---KQDYIA--INAHS---RSSVQKLLELVELKLKE 128 (375)
Q Consensus 81 K~DL~~~~~~~----~~~~~~~~~---g~~vi~--iSa~~---~~gvk~Ll~~L~~~l~~ 128 (375)
|+|+ +++..+ +..+++... ..++++ +||++ +.|+++|++.+.+.++.
T Consensus 122 K~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 122 SDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp GGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9999 654332 333444332 257899 99999 99999999998887764
No 259
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=9.5e-06 Score=70.62 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.7
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....++|+++|.+|||||||+|.+.+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 45679999999999999999999986
No 260
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.02 E-value=5.2e-06 Score=72.88 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.||||||||+|.+.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3457999999999999999999986
No 261
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.02 E-value=6.8e-06 Score=73.25 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4568999999999999999999996
No 262
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.01 E-value=6.6e-06 Score=72.79 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhc
Confidence 4467999999999999999999997
No 263
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.01 E-value=4.7e-07 Score=79.74 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE--EEEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA--GFKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~--~~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+|+|.+|||||||+|+|.+. .......|++|.+.. .+.+... -.+.++||||...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 34689999999999999999999861 111111223333332 3333321 1478999999654
No 264
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.01 E-value=4.8e-06 Score=72.97 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=59.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---hHhhc---cCCCCEEEEEEcCCCCChh--------------hHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---GLQPQ---LSAKRRVIALNKKDLANPN--------------ILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~l~~~---~~~kp~IiVlNK~DL~~~~--------------~~~~~~~~~~~~ 100 (375)
..+.++|++|+|+|+..+.+..+. .+..+ ..+.|+++|+||+|+.+.. ..+....+.+..
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 457899999999999765332211 11111 3478999999999997531 111222222233
Q ss_pred CC-cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 101 KQ-DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 101 g~-~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+. .++.+||+++.|++++++++.+.+.+
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 54 78999999999999999998776654
No 265
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.01 E-value=9e-06 Score=71.92 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|.|.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999999996
No 266
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.00 E-value=1.6e-05 Score=69.94 Aligned_cols=88 Identities=18% Similarity=0.075 Sum_probs=61.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCC--chhHhhc---c--CCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSA--HPGLQPQ---L--SAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~--~~~l~~~---~--~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..+..+|++|+|+|+..+.+-. ...+..+ . .+.|+++|.||+||.+... .++..++.+..+..++.+||++
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 4578899999999997653211 1122222 1 3789999999999975321 2233333334567889999999
Q ss_pred ccCHHHHHHHHHHHHhh
Q 017187 112 RSSVQKLLELVELKLKE 128 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~ 128 (375)
+.|++++++.+.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877654
No 267
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.00 E-value=8.2e-06 Score=79.14 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+|+|+|.+|||||||+|+|.+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999997
No 268
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.00 E-value=2.9e-06 Score=84.82 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
+-..|.|+|.+|+|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3456889999999999999999973
No 269
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.99 E-value=1.1e-05 Score=71.80 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|.|.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999997
No 270
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.99 E-value=7.4e-06 Score=78.65 Aligned_cols=101 Identities=18% Similarity=0.057 Sum_probs=66.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD 98 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~ 98 (375)
-..|||.. ........++.+|++|+|+|+..+.+... ..+... ..+.|+++|+||+|+.+....+++...+.
T Consensus 214 ~Dt~G~~~-~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~ 292 (329)
T 3o47_A 214 WDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 292 (329)
T ss_dssp EECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred EECCCCHh-HHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhc
Confidence 45778632 22234456889999999999976533211 122222 24789999999999987654445554442
Q ss_pred h-----CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 S-----CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 ~-----~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
. .+..++.+||+++.|++++++.|.+.+.
T Consensus 293 ~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 293 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred hhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 1 2346889999999999999999987664
No 271
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.98 E-value=1e-05 Score=81.77 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~ 205 (375)
...++++++|.||||||||+|+|.+ .......++.|++.. .+.. .+-.+.++||||...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~-----------~~~~~~~~T~~~~~~--~~~~-~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL-----------GQSVTTIPTVGFNVE--TVTY-KNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEE--EEES-SSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc-----------CCCCCcCCccceeEE--EEEe-CCEEEEEEECCCcHH
Confidence 4568999999999999999999997 222233333333332 2222 233689999999643
No 272
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.98 E-value=6.8e-06 Score=71.31 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++|+++|.||||||||+|.|.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 273
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.98 E-value=1.3e-05 Score=77.73 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhh-----------CCCcEEEEec
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDS-----------CKQDYIAINA 109 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----------~g~~vi~iSa 109 (375)
..+..+|++|+|+|+...... ..+......+|.++|+||+|+.+........+.+.+ .+.+++++||
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence 345899999999997543211 122222334699999999999765433322222211 1357999999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+++.|+++|.+++.+.+..
T Consensus 266 ~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 266 VEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 274
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.97 E-value=5e-06 Score=73.59 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=60.4
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhh----------HHHHHHHHhhCCC-c
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNI----------LNKWVRHFDSCKQ-D 103 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~----------~~~~~~~~~~~g~-~ 103 (375)
..+.++|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+||.+... .+...++....+. .
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA 155 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSE
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCce
Confidence 45789999999999976533211 111111 24789999999999975432 2222233334454 7
Q ss_pred EEEEecCCccCHHHHHHHHHHHHhh
Q 017187 104 YIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 104 vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
++.+||+++.|++++++++.+.+..
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999998877654
No 275
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.97 E-value=4.6e-06 Score=77.33 Aligned_cols=83 Identities=19% Similarity=0.078 Sum_probs=56.6
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHH-HHHHHHhhCCCcEEEEecCCccCHHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILN-KWVRHFDSCKQDYIAINAHSRSSVQKLLEL 121 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~-~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~ 121 (375)
..+|++++|+|+..+... ...+..+ ..+.|+++|+||+|+....... ...+..+..+.+++++||+++.|++++++.
T Consensus 82 ~~~d~ii~V~D~t~~~~~-~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS-LYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp SCCSEEEEEEETTSCHHH-HHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHH
T ss_pred cCCCEEEEEeCCCchhhH-HHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHH
Confidence 689999999999764211 1122222 3478999999999986432211 111122234678999999999999999999
Q ss_pred HHHHHh
Q 017187 122 VELKLK 127 (375)
Q Consensus 122 L~~~l~ 127 (375)
+.+.+.
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 877653
No 276
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.97 E-value=8e-06 Score=72.25 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=63.4
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhH-hhc---cCCCCEEEEEEcCCCCChhhHHHH-------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGL-QPQ---LSAKRRVIALNKKDLANPNILNKW------- 93 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l-~~~---~~~kp~IiVlNK~DL~~~~~~~~~------- 93 (375)
..||+... .......++++|++|+|+|+..+.+-.+ ..+ ..+ ..+.|+++|+||+|+.+.....+.
T Consensus 79 Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 157 (207)
T 2fv8_A 79 DTAGQEDY-DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157 (207)
T ss_dssp ECTTCTTC-TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred ECCCcHHH-HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence 46776321 1122345789999999999876432111 111 111 247899999999999764322211
Q ss_pred -------HHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHHh
Q 017187 94 -------VRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 94 -------~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.++....+. .++.+||+++.|++++++++.+.+.
T Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122223344 6889999999999999999887654
No 277
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.97 E-value=4.6e-06 Score=73.81 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=62.6
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch--hHh-hc---cCCCCEEEEEEcCCCCChhhH----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP--GLQ-PQ---LSAKRRVIALNKKDLANPNIL---------- 90 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~--~l~-~~---~~~kp~IiVlNK~DL~~~~~~---------- 90 (375)
..||+.. ........++.+|++|+|+|+..+.+..+. .+. .+ ..++|+++|+||+|+.+....
T Consensus 84 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 4gzl_A 84 DTAGLED-YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
T ss_dssp EECCSGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred ECCCchh-hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccc
Confidence 4667622 112223467899999999999865432211 111 11 247899999999999764321
Q ss_pred ----HHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHH
Q 017187 91 ----NKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 91 ----~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
+....+.+..+. +++.+||+++.|++++++++.+.
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122223333443 58999999999999999988653
No 278
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.96 E-value=1.6e-05 Score=69.17 Aligned_cols=87 Identities=14% Similarity=-0.017 Sum_probs=58.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCCh----hhHHHHHHHHhhCC-CcEEEEec
Q 017187 42 RLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANP----NILNKWVRHFDSCK-QDYIAINA 109 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~----~~~~~~~~~~~~~g-~~vi~iSa 109 (375)
.+..+|++++|+|+..+.+-.+ ..+..+ ..+.|+++|.||+||... ...+...++....+ ..++.+||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 6778999999999986543221 112222 146799999999999421 11222333333444 67899999
Q ss_pred CCccCHHHHHHHHHHHHhh
Q 017187 110 HSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~~ 128 (375)
+++.|++++++++.+.+.+
T Consensus 162 ~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998776644
No 279
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.9e-06 Score=87.28 Aligned_cols=72 Identities=28% Similarity=0.400 Sum_probs=43.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc--ccccccC----------------CCCCeeeeeEEEEEc-cC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK--TKRATVG----------------PLPGVTQDIAGFKIA-HR 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k--~~~~~v~----------------~~pg~T~~~~~~~i~-~~ 192 (375)
...++|+++|.+|||||||+|+|++. +.+......+ ......+ ..+|+|.+.....+. ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55789999999999999999999852 1110000000 0000011 136888877643232 23
Q ss_pred CcEEEEEcCCCC
Q 017187 193 PSIYVLDTPGVL 204 (375)
Q Consensus 193 ~~~~liDTPGi~ 204 (375)
..+.++||||..
T Consensus 245 ~~~~iiDTPG~e 256 (611)
T 3izq_1 245 ANFTIVDAPGHR 256 (611)
T ss_dssp CEEEEEECCSSS
T ss_pred ceEEEEECCCCc
Confidence 368999999974
No 280
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.95 E-value=1.4e-05 Score=70.15 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~ 205 (375)
..++++++|.+|||||||+|.|.+.. ......+..|++.....+.+.+.. .+.++||||...
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~----------~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNE----------FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC----------CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC----------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 35789999999999999999999710 111112222332222233343221 356799999653
No 281
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.94 E-value=1.2e-05 Score=70.10 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++|+++|.+|||||||+|+|.+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999997
No 282
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.94 E-value=4.9e-06 Score=71.31 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|++.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999996
No 283
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.94 E-value=2.2e-05 Score=86.17 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=70.3
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCC-EEEEEEcCCCCCh-hhH----HHHHHH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKR-RVIALNKKDLANP-NIL----NKWVRH 96 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp-~IiVlNK~DL~~~-~~~----~~~~~~ 96 (375)
+-.-|||.. ..+.+...+..+|++|+|+|++.+...+....... ..+.| +|+|+||+|+.+. +.. ++..++
T Consensus 363 IIDTPGHed-F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 363 HVDCPGHAD-YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp EEECCCHHH-HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred EEECCChHH-HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 445899964 45667778899999999999988655443222222 34677 6899999999853 211 223334
Q ss_pred HhhCC-----CcEEEEecCCc--------cCHHHHHHHHHHHHh
Q 017187 97 FDSCK-----QDYIAINAHSR--------SSVQKLLELVELKLK 127 (375)
Q Consensus 97 ~~~~g-----~~vi~iSa~~~--------~gvk~Ll~~L~~~l~ 127 (375)
+...+ .+++++|++++ .|+.+|++.+...++
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 43333 47899999998 468888888877654
No 284
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.94 E-value=5.4e-06 Score=74.06 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCCh--------------hhHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANP--------------NILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~--------------~~~~~~~~~~~~~ 100 (375)
..+..+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|.||+||.+. ...+...++.+..
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 45789999999999987543221 111111 347899999999999642 1112222333344
Q ss_pred CC-cEEEEecCCccC-HHHHHHHHHHHHhh
Q 017187 101 KQ-DYIAINAHSRSS-VQKLLELVELKLKE 128 (375)
Q Consensus 101 g~-~vi~iSa~~~~g-vk~Ll~~L~~~l~~ 128 (375)
+. .++.+||+++.| ++++++.+.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 66 789999999998 99999998776643
No 285
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.93 E-value=1.1e-05 Score=71.93 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|.|.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 4568999999999999999999986
No 286
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.93 E-value=2.3e-06 Score=79.35 Aligned_cols=80 Identities=24% Similarity=0.142 Sum_probs=55.2
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHH-hhCCCcEEEEecCCccCHHHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHF-DSCKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
.++|+||+|+|+..+ ..+..+... ..++|+++|+||+|+.+........+.+ +..+.+++++||+++.|++++++
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 789999999999763 112222222 3478999999999987543221111112 23467899999999999999988
Q ss_pred HHHHH
Q 017187 121 LVELK 125 (375)
Q Consensus 121 ~L~~~ 125 (375)
.+.+.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 87543
No 287
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.93 E-value=6.4e-06 Score=83.24 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hccccc----------cccc--------ccccccCCCCCeeeeeEEEEEc-cC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFP----------VQEK--------TKRATVGPLPGVTQDIAGFKIA-HR 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~----------~~~k--------~~~~~v~~~pg~T~~~~~~~i~-~~ 192 (375)
...++|+++|.+|+|||||+|+|+.. +.+... ..|+ .........+|+|.+.....+. ..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 56789999999999999999999862 111000 0000 0112334456888877654443 23
Q ss_pred CcEEEEEcCCCC
Q 017187 193 PSIYVLDTPGVL 204 (375)
Q Consensus 193 ~~~~liDTPGi~ 204 (375)
..+.++||||..
T Consensus 111 ~~~~iiDTPG~~ 122 (483)
T 3p26_A 111 ANFTIVDAPGHR 122 (483)
T ss_dssp CEEEEECCCCCG
T ss_pred ceEEEEECCCcH
Confidence 468999999984
No 288
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.93 E-value=3.3e-06 Score=73.25 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|.|.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999998886
No 289
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.92 E-value=4.6e-06 Score=74.78 Aligned_cols=102 Identities=14% Similarity=-0.047 Sum_probs=64.3
Q ss_pred cccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHH
Q 017187 26 NWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHF 97 (375)
Q Consensus 26 ~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~ 97 (375)
-..|||... .......++.+|++|+|+|+..+.+..+ ..+..+ ..+.|+++|+||+||.+... .+...++.
T Consensus 67 ~Dt~G~~~~-~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 145 (223)
T 3cpj_B 67 WDTAGQERY-RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA 145 (223)
T ss_dssp ECCTTTTTT-TCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH
T ss_pred EECCCccch-hhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence 346776321 1122345789999999999986543211 111222 23689999999999975321 22333444
Q ss_pred hhCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 98 DSCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+..+..++.+||+++.|++++++++.+.+.+
T Consensus 146 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999999877654
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.92 E-value=1.9e-05 Score=69.08 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCC-cEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRP-SIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~-~~~liDTPGi~~ 205 (375)
..++++++|.+|||||||+|.|.+. .......+..|+......+.+.+.+ .+.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3578999999999999999999971 1111222223332222234343221 245699999754
No 291
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.92 E-value=3.4e-06 Score=87.43 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hccccc----------ccccc--------cccccCCCCCeeeeeEEEEEcc-C
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFP----------VQEKT--------KRATVGPLPGVTQDIAGFKIAH-R 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~----------~~~k~--------~~~~v~~~pg~T~~~~~~~i~~-~ 192 (375)
...++|+++|.+|+|||||+|.|+.. +.+... ..|+. ........+|+|++.....+.. +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45679999999999999999999751 111100 00000 0001112578898876433322 2
Q ss_pred CcEEEEEcCCCCC
Q 017187 193 PSIYVLDTPGVLV 205 (375)
Q Consensus 193 ~~~~liDTPGi~~ 205 (375)
..+.++||||...
T Consensus 255 ~~i~iiDTPGh~~ 267 (592)
T 3mca_A 255 KIYEIGDAPGHRD 267 (592)
T ss_dssp ----CCEEESSSE
T ss_pred eEEEEEECCChHH
Confidence 3588999999753
No 292
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.91 E-value=7.6e-06 Score=81.20 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCCCC
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGVLV 205 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi~~ 205 (375)
-.++++|.||||||||+|+|.+ ....++..|.+|..... +.......+.++||||+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg------------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHc------------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 3589999999999999999986 22356677888766542 3333224689999999864
No 293
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.90 E-value=9.6e-06 Score=82.92 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=35.7
Q ss_pred ccCHHHHHHHHHHHHhhh--h---ccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 112 RSSVQKLLELVELKLKEV--I---SREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~~--~---~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..|++.+..+++...... + .....++|+++|.||||||||+|+|.+
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhc
Confidence 457788888877765521 1 235578999999999999999999996
No 294
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.89 E-value=2.2e-06 Score=87.70 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=43.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEE--ccCCcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKI--AHRPSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i--~~~~~~~liDTPGi~~ 205 (375)
+..+|+++|.+|+|||||+|+|.+. . ......||+|++...+.+ ..+..+.++||||...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~-----------~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT-----------Q-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH-----------H-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-----------C-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 3467999999999999999999971 1 223356788888764333 2334689999999643
No 295
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.89 E-value=3.4e-06 Score=83.89 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=64.5
Q ss_pred HHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHHh-hCCCcEEEEecCCc
Q 017187 36 TRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHFD-SCKQDYIAINAHSR 112 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-~~g~~vi~iSa~~~ 112 (375)
.+++...+..+|++|+|+|+ ........+.+. ..++|+++|+||+|+.+.... +..+.+. ..+.+++.+||+++
T Consensus 104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCC
Confidence 34566788999999999998 222222222222 347899999999999866543 2333332 34668899999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 017187 113 SSVQKLLELVELKLKE 128 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~ 128 (375)
.|++++++.+.+.+++
T Consensus 181 ~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 181 KGFDDIGKTISEILPG 196 (423)
T ss_dssp TSTTTHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999988844
No 296
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=1.6e-05 Score=71.44 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.||||||||+|.+.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999985
No 297
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.87 E-value=2.5e-05 Score=68.40 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhH----H----HHHHHHh-----h
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNIL----N----KWVRHFD-----S 99 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~----~----~~~~~~~-----~ 99 (375)
...++.+|++|+|+|+..+.......+..+ ..+.|+++|.||+||.+.+.. . ...+.+. .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 467789999999999987521111222222 247899999999999874321 1 1112221 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHHH
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVELK 125 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~~~ 125 (375)
.+..++.+||++ .|++++++.+.+.
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHHHHH
Confidence 345788999999 9999998887654
No 298
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.86 E-value=0.00012 Score=62.94 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=55.0
Q ss_pred hhhcCeEEEEEeCCCCCC-----------CCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCC-----C
Q 017187 43 LKISDLVIEVRDSRIPLS-----------SAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCK-----Q 102 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s-----------~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g-----~ 102 (375)
...+++++.|+|+..... .....+... ..+.|+++|+||+|+.+.. ..+.+.+.+. .. .
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh-hhhhccCC
Confidence 455778888998753210 000111122 3478999999999998753 2333433332 11 1
Q ss_pred cEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 103 DYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 103 ~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++.+||+++.|++++++++.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcch
Confidence 47899999999999999999887755
No 299
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.85 E-value=1.7e-05 Score=78.96 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=59.0
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC----CchhHhhc-----cCC-CCEEEEEEcCCCCCh----hh-
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS----AHPGLQPQ-----LSA-KRRVIALNKKDLANP----NI- 89 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~----~~~~l~~~-----~~~-kp~IiVlNK~DL~~~----~~- 89 (375)
+-..|||.. ....+...+..+|++|+|+|++..... ..++..+. ..+ .++++|+||+|+.+. +.
T Consensus 88 iiDtpG~~~-f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 166 (435)
T 1jny_A 88 IIDAPGHRD-FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRY 166 (435)
T ss_dssp ECCCSSSTT-HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred EEECCCcHH-HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHH
Confidence 345899954 445677789999999999999874000 11122221 123 468999999999872 11
Q ss_pred ---HHHHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187 90 ---LNKWVRHFDSCK-----QDYIAINAHSRSSVQ 116 (375)
Q Consensus 90 ---~~~~~~~~~~~g-----~~vi~iSa~~~~gvk 116 (375)
.++..+++...+ .+++++||+++.|+.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 167 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 223334444334 468999999999886
No 300
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.84 E-value=9.4e-06 Score=71.34 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=60.1
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~ 111 (375)
..+..+|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.... ....++....+..++.+||++
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 170 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE 170 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCC
Confidence 45778999999999976432211 111111 136799999999999754321 222233334567889999999
Q ss_pred ccCHHHHHHHHHHHHhh
Q 017187 112 RSSVQKLLELVELKLKE 128 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~~ 128 (375)
+.|++++++.+.+.+.+
T Consensus 171 ~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887765
No 301
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.83 E-value=6.1e-06 Score=76.73 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=56.8
Q ss_pred hhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCC-CCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 43 LKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSA-KRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~-kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..++|++++|+|+..+. .+.. +... ..+ +|+++|+||+|+.+... ...+.+ ..+.+++++|++++.|+
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---ELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HHSSCEEECBGGGTBTH
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---HcCCcEEEEEeCCCCCH
Confidence 47899999999997641 1111 1222 234 99999999999864332 222222 34678999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017187 116 QKLLELVELKLKE 128 (375)
Q Consensus 116 k~Ll~~L~~~l~~ 128 (375)
+++++.+...+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999998776543
No 302
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.83 E-value=2.6e-06 Score=79.60 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhh-c-cCCCCEEEEEEcCCCCChhh----HHHHHHHHhhCCCcEEEEe
Q 017187 35 ATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQP-Q-LSAKRRVIALNKKDLANPNI----LNKWVRHFDSCKQDYIAIN 108 (375)
Q Consensus 35 ~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~-~-~~~kp~IiVlNK~DL~~~~~----~~~~~~~~~~~g~~vi~iS 108 (375)
.+.+.......+|++|+|+|+..+. .+..+.. + ..+.|+++|+||+|+.+... .+.+.+ ..+.+++++|
T Consensus 75 ~i~~~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~S 149 (274)
T 3i8s_A 75 QIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLV 149 (274)
T ss_dssp HHHHHHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECC
T ss_pred HHHHHHHhhcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEE
Confidence 3333333457999999999997531 1112222 2 34789999999999875432 222222 3467899999
Q ss_pred cCCccCHHHHHHHHHHHH
Q 017187 109 AHSRSSVQKLLELVELKL 126 (375)
Q Consensus 109 a~~~~gvk~Ll~~L~~~l 126 (375)
|+++.|++++++.+.+.+
T Consensus 150 A~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYK 167 (274)
T ss_dssp CGGGHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999988886544
No 303
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=70.32 Aligned_cols=99 Identities=13% Similarity=-0.012 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc---c----CCCCEEEEEEcCCCCChhh--HHHHHH
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ---L----SAKRRVIALNKKDLANPNI--LNKWVR 95 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~---~----~~kp~IiVlNK~DL~~~~~--~~~~~~ 95 (375)
..||+... +.+...+..+|++|+|+|+..+.+-.+ ..+..+ . .+.|+++|+||+|+.+... .++..+
T Consensus 75 Dt~G~~~~--~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 152 (187)
T 3c5c_A 75 DTADLDTP--RNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA 152 (187)
T ss_dssp ECCC---C--CCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred ECCCCCcc--hhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHH
Confidence 46776421 113467889999999999976432211 111111 1 4789999999999964321 223333
Q ss_pred HHhhCCCcEEEEec-CCccCHHHHHHHHHHHHh
Q 017187 96 HFDSCKQDYIAINA-HSRSSVQKLLELVELKLK 127 (375)
Q Consensus 96 ~~~~~g~~vi~iSa-~~~~gvk~Ll~~L~~~l~ 127 (375)
+.++.+..++.+|| +++.|++++++.+.+.+.
T Consensus 153 ~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 153 LAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 34445678899999 899999999998877653
No 304
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.82 E-value=1.2e-05 Score=78.14 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+|+|.+|||||||+|+|++
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 5678899999999999999999986
No 305
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.81 E-value=1.7e-05 Score=80.12 Aligned_cols=89 Identities=16% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc-----cCCCCEEEEEEcCCCCChhhHHHHHHHHh-----hCCCcEEEE
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ-----LSAKRRVIALNKKDLANPNILNKWVRHFD-----SCKQDYIAI 107 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~-----~~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~g~~vi~i 107 (375)
...++++|++|+|+|+..+.+..+ ..+..+ ..++|+|+|+||+||.+.....+..+.+. ..+..++.+
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS 463 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEE
Confidence 356889999999999987532211 122222 24789999999999976543344433332 122358899
Q ss_pred ecCCccCHHHHHHHHHHHHhh
Q 017187 108 NAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~l~~ 128 (375)
||+++.|+++++++|.+.+..
T Consensus 464 SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 464 CATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp BTTTTBTHHHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 306
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=76.99 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
..++|+|+|.+|||||||+|.|.+ ..... ..| |.......+. ..-.+.++||||-.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~-----------~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS-----------SCCEE--EEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhC-----------CCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 456899999999999999999986 11111 112 3333322222 22358899999953
No 307
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=1.1e-05 Score=69.58 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=55.6
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L 118 (375)
..+|++++|+|+... ......+... ..+.|+++|+||+|+.... ..+.+.+ ..+.+++.+|++++.|++++
T Consensus 84 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL-ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp HCCSEEEEEEEGGGH-HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHHH
T ss_pred cCCCEEEEEecchhH-HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhCCCeEEEEecCCCCHHHH
Confidence 459999999998642 1111112222 3468999999999986432 2223322 33568899999999999999
Q ss_pred HHHHHHHHhh
Q 017187 119 LELVELKLKE 128 (375)
Q Consensus 119 l~~L~~~l~~ 128 (375)
++++.+.+..
T Consensus 160 ~~~i~~~~~~ 169 (188)
T 2wjg_A 160 KKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999887754
No 308
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.77 E-value=1.9e-05 Score=79.50 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=52.3
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCC-------CCc-hhHhhc-cCCCC-EEEEEEcCCCCC----hhh-
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLS-------SAH-PGLQPQ-LSAKR-RVIALNKKDLAN----PNI- 89 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s-------~~~-~~l~~~-~~~kp-~IiVlNK~DL~~----~~~- 89 (375)
+-..|||. +..+.+...+..+|++|+|+|++.+.. ... ..+... ..+.| +|+|+||+|+.+ ++.
T Consensus 125 iiDtPGh~-~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~ 203 (467)
T 1r5b_A 125 LLDAPGHK-GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 203 (467)
T ss_dssp ECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred EEECCCcH-HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence 45589995 445667778899999999999987531 111 111111 34666 899999999964 121
Q ss_pred ---HHHHHHHHhhC-C------CcEEEEecCCccCHHH
Q 017187 90 ---LNKWVRHFDSC-K------QDYIAINAHSRSSVQK 117 (375)
Q Consensus 90 ---~~~~~~~~~~~-g------~~vi~iSa~~~~gvk~ 117 (375)
..+..+++... + .+++++|++++.|+.+
T Consensus 204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 12233344333 3 3588999999998865
No 309
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.76 E-value=1.9e-05 Score=74.57 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=64.3
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChhh-----------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPNI----------- 89 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~~----------- 89 (375)
..||+.. ........+.++|++|+|+|+..+.+..+. .+.....++|+++|+||+|+.+...
T Consensus 209 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 287 (332)
T 2wkq_A 209 DTAGLED-YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287 (332)
T ss_dssp EECCCGG-GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred eCCCchh-hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccc
Confidence 4667532 112233457899999999999765432211 1111134789999999999965321
Q ss_pred ---HHHHHHHHhhCCC-cEEEEecCCccCHHHHHHHHHHHH
Q 017187 90 ---LNKWVRHFDSCKQ-DYIAINAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 90 ---~~~~~~~~~~~g~-~vi~iSa~~~~gvk~Ll~~L~~~l 126 (375)
.+...++.+..+. +++.+||+++.|++++++.+.+.+
T Consensus 288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 288 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 1122233334455 789999999999999999987765
No 310
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.73 E-value=0.00012 Score=69.14 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccC-CcEEEEEcCCCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHR-PSIYVLDTPGVLV 205 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~-~~~~liDTPGi~~ 205 (375)
...++|+++|.+|||||||+|.+.+. . .....++||.+... +.+... -.+.++||||...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN-----------A--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS-----------C--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC-----------C--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 56789999999999999999999861 1 12223344444332 222221 1255999999754
No 311
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.71 E-value=1.7e-06 Score=76.01 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhhH--HHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNIL--NKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
..++++|++|+|+|+..+.+... ..+..+ ..+.|+++|+||+|+.+.... +...++....+.+++.+||+++
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 45778999999999987533111 111111 236899999999999754321 1122233345677889999999
Q ss_pred cCHHHHHHHHHHHHh
Q 017187 113 SSVQKLLELVELKLK 127 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~ 127 (375)
.|++++++++.+.+.
T Consensus 181 ~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998866543
No 312
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.70 E-value=2.8e-05 Score=76.69 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhhhccccccccc-cc--c------cccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEK-TK--R------ATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG 202 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k-~~--~------~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG 202 (375)
...++++++|.+|+|||||+|+|.+.... .++ .. . ......+|+|.+.....+. ....+.++||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~----~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAA----ENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHH----SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhh----cCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 46789999999999999999999862000 000 00 0 0001135777766543333 234689999999
Q ss_pred CCC
Q 017187 203 VLV 205 (375)
Q Consensus 203 i~~ 205 (375)
...
T Consensus 85 ~~~ 87 (405)
T 2c78_A 85 HAD 87 (405)
T ss_dssp SGG
T ss_pred hHH
Confidence 764
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.69 E-value=3.3e-05 Score=74.43 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+|||||+|.|.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5677899999999999999999985
No 314
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.87 E-value=5.3e-06 Score=73.06 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|||||||+|+|.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 5678999999999999999999986
No 315
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.69 E-value=5.5e-05 Score=68.14 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+.++|+|+|.+|||||||++.+..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHh
Confidence 467999999999999999999986
No 316
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.68 E-value=1.1e-05 Score=81.84 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLVP 206 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~~ 206 (375)
+..+|+++|.+|+|||||+|+|++.. ...+..+|+|.+...+.+. .+..+.++||||....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence 45679999999999999999998621 2223346777776533332 2346899999997543
No 317
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.68 E-value=1.3e-05 Score=80.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|+|||||+|+|++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 29 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIY 29 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 318
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.68 E-value=2.6e-05 Score=67.40 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=61.5
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCch------hHhhccCCCCEEEEEEcCCCCChh------------
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHP------GLQPQLSAKRRVIALNKKDLANPN------------ 88 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~------~l~~~~~~kp~IiVlNK~DL~~~~------------ 88 (375)
..||+... .......+..+|++|+|+|+..+.+..+. .+.+...+.|+++|.||+|+.+..
T Consensus 61 Dt~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 139 (184)
T 1m7b_A 61 DTSGSPYY-DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139 (184)
T ss_dssp EECCSGGG-TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred ECCCChhh-hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence 36676321 11122457899999999999765332211 111113578999999999997421
Q ss_pred --hHHHHHHHHhhCC-CcEEEEecC-CccCHHHHHHHHHHHH
Q 017187 89 --ILNKWVRHFDSCK-QDYIAINAH-SRSSVQKLLELVELKL 126 (375)
Q Consensus 89 --~~~~~~~~~~~~g-~~vi~iSa~-~~~gvk~Ll~~L~~~l 126 (375)
..+...++.+..+ ..++.+||+ ++.|++++++.+.+.+
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1112222222334 578899998 6899999999887654
No 319
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.68 E-value=4.5e-05 Score=75.02 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhccccccccccc--------ccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTK--------RATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~--------~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
..++++++|.+|+|||||+|+|.+.... .++.. ........|+|.+.....+. ....+.++||||..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~----~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAE----GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHH----TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhh----cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 4578999999999999999999862100 00000 00111245788776544443 23468999999974
No 320
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.66 E-value=1.7e-05 Score=74.25 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=54.1
Q ss_pred hhcCeEEEEEeCCCCCCCCchhH-hhc-cCCCCEEEEEEcCCCCChh----hHHHHHHHHhhCCCcEEEEecCCccCHHH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGL-QPQ-LSAKRRVIALNKKDLANPN----ILNKWVRHFDSCKQDYIAINAHSRSSVQK 117 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l-~~~-~~~kp~IiVlNK~DL~~~~----~~~~~~~~~~~~g~~vi~iSa~~~~gvk~ 117 (375)
..+|++|.|+|+.... .+..+ ..+ ..++|+++|+||+|+.... ..+.+.+ ..+.+++++||+++.|+++
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBTTTTBSHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCCEEEEEccCCCCHHH
Confidence 4699999999997531 11112 122 2578999999999986432 1223333 3467899999999999999
Q ss_pred HHHHHHHHH
Q 017187 118 LLELVELKL 126 (375)
Q Consensus 118 Ll~~L~~~l 126 (375)
+++.+.+.+
T Consensus 154 l~~~i~~~~ 162 (272)
T 3b1v_A 154 VVKKAAHTT 162 (272)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHH
Confidence 999886543
No 321
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.66 E-value=2.9e-05 Score=68.94 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=56.7
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch---h---HhhccCCCCEEEEEEcCCCCChh--------------hHHHHHHHHhhC
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP---G---LQPQLSAKRRVIALNKKDLANPN--------------ILNKWVRHFDSC 100 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~---~---l~~~~~~kp~IiVlNK~DL~~~~--------------~~~~~~~~~~~~ 100 (375)
..+.++|++|+|+|+..+.+..+. . +.+...+.|+++|.||+|+.+.. ..++..++.+..
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 457899999999999765332211 1 11113578999999999997421 111222223233
Q ss_pred C-CcEEEEecC-CccCHHHHHHHHHHHH
Q 017187 101 K-QDYIAINAH-SRSSVQKLLELVELKL 126 (375)
Q Consensus 101 g-~~vi~iSa~-~~~gvk~Ll~~L~~~l 126 (375)
+ ..++.+||+ ++.|++++++.+.+.+
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 4 578999998 6889999999887654
No 322
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.66 E-value=6e-05 Score=67.92 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=59.9
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCC
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHS 111 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~ 111 (375)
...++.+|++++|.|...+.+-.+ ..+..+ ..+.|+++|.||+||.+... .++..++.++.+..++.+||++
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAkt 159 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 159 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCC
Confidence 356789999999999876533221 112221 24678999999999975321 2233333344567889999999
Q ss_pred ccCHHHHHHHHHHHHh
Q 017187 112 RSSVQKLLELVELKLK 127 (375)
Q Consensus 112 ~~gvk~Ll~~L~~~l~ 127 (375)
+.|++++++.|.+.+.
T Consensus 160 g~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALP 175 (216)
T ss_dssp TBSHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999998876654
No 323
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.66 E-value=6e-05 Score=74.80 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=39.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccC---CcEEEEEcCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHR---PSIYVLDTPGVLV 205 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~---~~~~liDTPGi~~ 205 (375)
..++++|+|.+|+|||||+|.|.+.- . .+ .......|+.++....+..... +.+.++||||+..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~-l----~g---~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK-F----EG---EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC-C--------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc-c----cC---CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 33459999999999999999999831 0 00 1112224566665444433322 2578999999965
No 324
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.66 E-value=1.4e-05 Score=80.27 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=65.0
Q ss_pred hcccccceEEeeCCCc----ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCC-------Cch-hHhhc-cCCCC-
Q 017187 9 KGLGLGEMGFTKGGGN----INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSS-------AHP-GLQPQ-LSAKR- 74 (375)
Q Consensus 9 ~~~~~g~~~~~~~~~~----~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~-------~~~-~l~~~-~~~kp- 74 (375)
+|+++......+.... +-.-|||. +..+.+...+..+|++|+|+|++.+... ... .+... ..+.|
T Consensus 69 ~GiTi~~~~~~~~~~~~~~~iiDtPGh~-~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~ 147 (458)
T 1f60_A 69 RGITIDIALWKFETPKYQVTVIDAPGHR-DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ 147 (458)
T ss_dssp TTCCCSCSCEEEECSSEEEEEEECCCCT-THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCE
T ss_pred cCcEEEEEEEEEecCCceEEEEECCCcH-HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCe
Confidence 5665544433333322 34589994 4556677788999999999999864210 111 11111 23555
Q ss_pred EEEEEEcCCCCC--hhhHH----HHHHHHhhCC-----CcEEEEecCCccCHH
Q 017187 75 RVIALNKKDLAN--PNILN----KWVRHFDSCK-----QDYIAINAHSRSSVQ 116 (375)
Q Consensus 75 ~IiVlNK~DL~~--~~~~~----~~~~~~~~~g-----~~vi~iSa~~~~gvk 116 (375)
+|+|+||+|+.+ ++..+ ++.+++...+ .+++++||+++.|+.
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 889999999983 33222 2333333333 578999999998875
No 325
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.65 E-value=2.9e-06 Score=88.00 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=58.7
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CCCchhHhhc--cCCCC-EEEEEEcCCCCC--hhhH--
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SSAHPGLQPQ--LSAKR-RVIALNKKDLAN--PNIL-- 90 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~~~~~l~~~--~~~kp-~IiVlNK~DL~~--~~~~-- 90 (375)
+-.-|||. +..+.+...+..+|++|+|+|++.+. .......... ..+.| +|+|+||+|+++ ++..
T Consensus 259 iiDTPGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~ 337 (592)
T 3mca_A 259 IGDAPGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE 337 (592)
T ss_dssp CCEEESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred EEECCChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHH
Confidence 44578884 22333445567899999999998643 2221111111 34555 889999999976 3322
Q ss_pred --HHHHHHH-hhCCC-----cEEEEecCCccCHH--------------HHHHHHHHHHh
Q 017187 91 --NKWVRHF-DSCKQ-----DYIAINAHSRSSVQ--------------KLLELVELKLK 127 (375)
Q Consensus 91 --~~~~~~~-~~~g~-----~vi~iSa~~~~gvk--------------~Ll~~L~~~l~ 127 (375)
..+.+++ ...++ +++++||+++.|+. .|++.|....+
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 2333444 33344 58999999999987 68888766554
No 326
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.65 E-value=5.6e-05 Score=74.96 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=63.7
Q ss_pred HHhhhcCeEEEEEeCC-CCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCcc
Q 017187 41 HRLKISDLVIEVRDSR-IPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar-~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
+.++.+|.+++|+|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+.+.+..++.+||+++.
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 4467899999999985 2221111 111221 24689999999999987644555666665557789999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 017187 114 SVQKLLELVELKLKE 128 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~ 128 (375)
++++|++.+.+.+.+
T Consensus 311 gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 311 GLPALKEALHALVRS 325 (416)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999888765
No 327
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.64 E-value=2.5e-05 Score=78.93 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEE--EEEccCCcEEEEEcCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAG--FKIAHRPSIYVLDTPGV 203 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~--~~i~~~~~~~liDTPGi 203 (375)
..++++++|.+|+|||||+|+|.+..... .-........+|+|.+... +.+. +..+.++||||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~-----~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTS-----AHDKLPESQKRGITIDIGFSAFKLE-NYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEET-TEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCccc-----ccccccccccCccEEecceEEEEEC-CEEEEEEECCCh
Confidence 35899999999999999999999721000 0011234456788877652 3332 236899999996
No 328
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.63 E-value=1.3e-05 Score=83.30 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=58.5
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCC-------CCCchhHhhc---cCCCCEEEEEEcCCCCCh--hhH--
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPL-------SSAHPGLQPQ---LSAKRRVIALNKKDLANP--NIL-- 90 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~-------s~~~~~l~~~---~~~kp~IiVlNK~DL~~~--~~~-- 90 (375)
+-.-||| .+..+.+...+..+|++|+|+|++.+. .......... ...+++|+|+||+|+.+. ...
T Consensus 249 iiDTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~e 327 (611)
T 3izq_1 249 IVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE 327 (611)
T ss_dssp EEECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred EEECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHH
Confidence 4458999 345566667789999999999997631 1111111111 233458999999999872 211
Q ss_pred --HHHHHHHhhC-----CCcEEEEecCCccCHHHH
Q 017187 91 --NKWVRHFDSC-----KQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 91 --~~~~~~~~~~-----g~~vi~iSa~~~~gvk~L 118 (375)
+....++... ..+++++||+++.|+.++
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222333322 347899999999998754
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.62 E-value=3.9e-05 Score=73.98 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
......++++|.||+|||||+|.|.+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35678899999999999999999975
No 330
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.61 E-value=9.6e-05 Score=67.58 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCCCCchh-H----hh-c-cCCCCEEEEEEcCCCCChhhHHHHHHH--------------
Q 017187 38 AIKHRLKISDLVIEVRDSRIPLSSAHPG-L----QP-Q-LSAKRRVIALNKKDLANPNILNKWVRH-------------- 96 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p~s~~~~~-l----~~-~-~~~kp~IiVlNK~DL~~~~~~~~~~~~-------------- 96 (375)
.+.+.+.. +++++|+|+.......... . .. . ..++|.++|+||+|+.+....+...++
T Consensus 131 ~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~ 209 (262)
T 1yrb_A 131 RLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLD 209 (262)
T ss_dssp HHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhcc
Confidence 34455667 9999999986543322111 0 01 1 236899999999999875432211111
Q ss_pred --------------Hhh--CCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 --------------FDS--CKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 --------------~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
.++ ...+++++|++++.|+++|++++.+.++.
T Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 210 PSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 111 22368999999999999999999887754
No 331
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.60 E-value=0.00012 Score=75.92 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=64.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--------------
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN-------------- 88 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~-------------- 88 (375)
+-.-|||..-. ......+..+|++|+|+|+..+.........+. ..+.|+++|+||+|+.+..
T Consensus 74 liDTPGhe~F~-~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 74 FIDTPGHEAFT-TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp EECCCTTSCCT-TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred EEECCCcHHHH-HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence 33567873221 111234677999999999988654322222122 3578999999999997421
Q ss_pred ---h--------HHHHHHHHhhCC---------------CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 89 ---I--------LNKWVRHFDSCK---------------QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 89 ---~--------~~~~~~~~~~~g---------------~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
. ..+..+.+.+.+ .+++++||+++.|+++|++++...++.
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 011222222222 268899999999999999999877653
No 332
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.60 E-value=6.8e-05 Score=74.61 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|+|||||+|+|++
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHh
Confidence 3458999999999999999999986
No 333
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.59 E-value=8.3e-05 Score=66.12 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.....++++|.+|||||||+|.|..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3557899999999999999999986
No 334
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=0.00016 Score=71.60 Aligned_cols=66 Identities=29% Similarity=0.417 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~ 206 (375)
....++++|.+|+|||||+|+|.+.-... . +. ..++.. -+|+....+.....+++.++|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~---~--Gs-I~~~g~-~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE---E--GA-AKTGVV-EVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS---T--TS-CCCCC-----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc---C--ce-EEECCe-ecceeEEeccccccCCeeehHhhcccch
Confidence 45689999999999999999999832111 0 11 111111 1233211122222346899999998653
No 335
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.56 E-value=0.00019 Score=67.58 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHHHHhhhcCeEEEEEeC-CCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH-HhhCCCcEEEEec
Q 017187 36 TRAIKHRLKISDLVIEVRDS-RIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH-FDSCKQDYIAINA 109 (375)
Q Consensus 36 ~~~i~~~l~~~DlVI~VvDa-r~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~-~~~~g~~vi~iSa 109 (375)
...+...++.+|++++|+|+ ..+...... .+.+. ..++|+++|+||+|+.++.. ..++.+. +...+...+++++
T Consensus 158 ~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 237 (315)
T 1jwy_B 158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVIN 237 (315)
T ss_dssp HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEec
Confidence 34566788999999999996 545443332 34443 35789999999999986543 2222221 1111133445544
Q ss_pred ---CC---ccCHHHHHHHHHHHHhh
Q 017187 110 ---HS---RSSVQKLLELVELKLKE 128 (375)
Q Consensus 110 ---~~---~~gvk~Ll~~L~~~l~~ 128 (375)
.+ +.|+.++++.+...++.
T Consensus 238 ~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 238 RSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CChhhhccCCCHHHHHHHHHHHHhC
Confidence 44 67889998888887764
No 336
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.55 E-value=6.6e-05 Score=70.08 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.++++++|.+|+|||||+|+|.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999983
No 337
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.55 E-value=4.8e-05 Score=77.72 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=57.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc---cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCccCH
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ---LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSRSSV 115 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~---~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~~gv 115 (375)
..++.+|++|+|+|++.+ ......+..+ ..++|+++|+||+|+.+... .+...+.+...+.+++.+||+++.|+
T Consensus 117 ~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGV 195 (535)
T ss_dssp HHHHSSEEEEEEECGGGG-GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----C
T ss_pred HHccCCcEEEEEEeCCCc-hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCH
Confidence 457789999999998753 1111111222 24689999999999976432 33445555556778999999999999
Q ss_pred HHHHHHHHHHHhh
Q 017187 116 QKLLELVELKLKE 128 (375)
Q Consensus 116 k~Ll~~L~~~l~~ 128 (375)
+++++.+.+.+..
T Consensus 196 ~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 196 ESIAKSLKSAVLH 208 (535)
T ss_dssp TTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887754
No 338
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.0001 Score=66.11 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=56.3
Q ss_pred hhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCcc
Q 017187 43 LKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSRS 113 (375)
Q Consensus 43 l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~~ 113 (375)
...+|.+|+|+|...+.+-.+ .. +.+. ..+.|+++|.||+||.+... .++...+....+.+++.+||+++.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 567899999999875422111 11 1111 23689999999999964321 112112222345678999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 017187 114 SVQKLLELVELKLKE 128 (375)
Q Consensus 114 gvk~Ll~~L~~~l~~ 128 (375)
|++++++.+.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998776643
No 339
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.51 E-value=8e-05 Score=64.41 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred cchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCc---hhHhhc---cCCCCEEEEEEcCCCCChhhHH----HHHHHH
Q 017187 28 FPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAH---PGLQPQ---LSAKRRVIALNKKDLANPNILN----KWVRHF 97 (375)
Q Consensus 28 fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~---~~l~~~---~~~kp~IiVlNK~DL~~~~~~~----~~~~~~ 97 (375)
.+|... ........+..+|++++|+|...+..+.. ..+.++ ..+.|+++|.||+|+.+..... ...+.+
T Consensus 63 t~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 141 (184)
T 2zej_A 63 FAGREE-FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL 141 (184)
T ss_dssp ECSHHH-HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT
T ss_pred cCCCHH-HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHH
Confidence 566532 11222345788999999999876532211 112222 2468999999999998654332 222333
Q ss_pred h-hCCCc----EEEEecCCcc-CHHHHHHHHHHHHhh
Q 017187 98 D-SCKQD----YIAINAHSRS-SVQKLLELVELKLKE 128 (375)
Q Consensus 98 ~-~~g~~----vi~iSa~~~~-gvk~Ll~~L~~~l~~ 128 (375)
. ..+.. ++.+||+++. ++++|.+.+.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 142 LNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 2 23444 7889999996 999999888776654
No 340
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.51 E-value=5.8e-05 Score=73.69 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPGVLV 205 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPGi~~ 205 (375)
+++++|.+|+|||||+|+|.. .|+|.+.....+. ....+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------------------KGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------------------EEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHh--------------------CCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 899999999999999999983 1344444432222 233589999999854
No 341
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.50 E-value=3.2e-05 Score=79.04 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...+|+++|.+|||||||+|+|+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHh
Confidence 356899999999999999999973
No 342
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.50 E-value=9.7e-05 Score=72.86 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++++|.+|+|||||+|+|.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g 30 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG 30 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Confidence 4678999999999999999999986
No 343
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.50 E-value=7.2e-05 Score=73.82 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|+|||||+|+|.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g 32 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTG 32 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999999986
No 344
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.49 E-value=4.5e-05 Score=75.93 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hcccccc----------cccc--------cccccCCCCCeeeeeEEEEEc-cC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPV----------QEKT--------KRATVGPLPGVTQDIAGFKIA-HR 192 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~----------~~k~--------~~~~v~~~pg~T~~~~~~~i~-~~ 192 (375)
...++++++|.+|+|||||+|+|+.. +...... .|+. ........+|+|.+.....+. ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999862 1111000 0000 000011246788776532232 23
Q ss_pred CcEEEEEcCCCCC
Q 017187 193 PSIYVLDTPGVLV 205 (375)
Q Consensus 193 ~~~~liDTPGi~~ 205 (375)
..+.++||||...
T Consensus 84 ~~~~iiDtpG~~~ 96 (435)
T 1jny_A 84 YFFTIIDAPGHRD 96 (435)
T ss_dssp CEEEECCCSSSTT
T ss_pred eEEEEEECCCcHH
Confidence 3689999999754
No 345
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.47 E-value=8.8e-05 Score=71.83 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.....|+++|.||||||||+|.|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 346
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.47 E-value=7.6e-05 Score=69.40 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=47.5
Q ss_pred cCeEEEEEeCC-CCCCCCchhHhhc-cCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHH
Q 017187 46 SDLVIEVRDSR-IPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLL 119 (375)
Q Consensus 46 ~DlVI~VvDar-~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll 119 (375)
+|++++++|.. .++...+..+.+. ...+|+|+|+||+|+.++..... +.+.+...+.+++.+|+.++.++.++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 78888888654 3444433333333 34789999999999987655443 334444567788889999999999998
Q ss_pred HHHHHHHh
Q 017187 120 ELVELKLK 127 (375)
Q Consensus 120 ~~L~~~l~ 127 (375)
+.+.+.++
T Consensus 196 ~~l~~~~p 203 (274)
T 3t5d_A 196 KKIKDRLP 203 (274)
T ss_dssp HHHHHTCS
T ss_pred HHHhcCCC
Confidence 88876553
No 347
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.45 E-value=0.0001 Score=77.71 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh-hccccccccc-ccccccCC------CCCeeeeeEEEEEc-cCCcEEEEEcCCC
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK-TKRATVGP------LPGVTQDIAGFKIA-HRPSIYVLDTPGV 203 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k-~~~~~v~~------~pg~T~~~~~~~i~-~~~~~~liDTPGi 203 (375)
....+|+++|.+|+|||||+|+|+.. +.+.. .+. .....+.+ .+|+|.......+. .+..+.++||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~--~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHK--IGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 34578999999999999999999852 11110 000 00011222 35667655432222 2335889999999
Q ss_pred CC
Q 017187 204 LV 205 (375)
Q Consensus 204 ~~ 205 (375)
..
T Consensus 86 ~d 87 (693)
T 2xex_A 86 VD 87 (693)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 348
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.43 E-value=0.00015 Score=71.40 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....++|+++|.+|+|||||+|+|.+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999999986
No 349
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.42 E-value=0.00022 Score=75.25 Aligned_cols=103 Identities=10% Similarity=0.065 Sum_probs=67.7
Q ss_pred cccchhHHH--HHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChh--------hHH-
Q 017187 26 NWFPGHMAA--ATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPN--------ILN- 91 (375)
Q Consensus 26 ~wfpgHm~k--~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~--------~~~- 91 (375)
-.-||+... ....+...++++|+||+|+|+..+.+..+.. +.+. ..++|+++|+||+|+.+.. ..+
T Consensus 179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~ 258 (695)
T 2j69_A 179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQA 258 (695)
T ss_dssp EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHH
T ss_pred EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHH
Confidence 346775432 2345667889999999999998876644332 2222 2367899999999997542 111
Q ss_pred ---HHH----HHHhh---------CCCcEEEEecC--------------CccCHHHHHHHHHHHHhh
Q 017187 92 ---KWV----RHFDS---------CKQDYIAINAH--------------SRSSVQKLLELVELKLKE 128 (375)
Q Consensus 92 ---~~~----~~~~~---------~g~~vi~iSa~--------------~~~gvk~Ll~~L~~~l~~ 128 (375)
... +.+.. ....++++||+ ++.|++++.+.+.+.+..
T Consensus 259 ~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 259 SENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 111 11211 11368999999 999999999988876643
No 350
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.41 E-value=0.00018 Score=68.49 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=62.7
Q ss_pred HhhccCCCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHhhh------hccCCceEEE
Q 017187 66 LQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLKEV------ISREPTLLVM 139 (375)
Q Consensus 66 l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~~------~~~~~~~~v~ 139 (375)
++++.......+|++|.|..+++.+ +..++.+.+++.++..+...+..+..++...+... .-...+.-++
T Consensus 73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl 148 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVL 148 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEE
Confidence 3444445566789999999866533 33344578888887777777788777776654321 0123456799
Q ss_pred EEcCCCCChHHHHHHHHhh
Q 017187 140 VVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 140 vvG~pnvGKSsliN~L~~~ 158 (375)
++|.||+||||+.+.|.+.
T Consensus 149 ~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 149 ITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEESTTSSHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHhc
Confidence 9999999999999999974
No 351
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.40 E-value=0.00057 Score=59.92 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=59.6
Q ss_pred hhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChhhH----HHHHHHHhhCC--CcEEEEecCCccCH
Q 017187 44 KISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPNIL----NKWVRHFDSCK--QDYIAINAHSRSSV 115 (375)
Q Consensus 44 ~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~----~~~~~~~~~~g--~~vi~iSa~~~~gv 115 (375)
..+|.+++|+|+..+.+.....+.++ ..+.|.++|.||+|+.+.... ....+.+.+.+ ...+++|++++.++
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 57899999999987755332233333 357899999999999875422 23333343332 35788999999999
Q ss_pred HHHHHHHHHHHhh
Q 017187 116 QKLLELVELKLKE 128 (375)
Q Consensus 116 k~Ll~~L~~~l~~ 128 (375)
+++++.+.+.+.+
T Consensus 187 ~~l~~~l~~~~~~ 199 (210)
T 1pui_A 187 DKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877643
No 352
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.37 E-value=0.00033 Score=61.12 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=56.2
Q ss_pred HhhhcCeEEEEEeCCCCCCCCc--hh---Hhhc--cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187 42 RLKISDLVIEVRDSRIPLSSAH--PG---LQPQ--LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~--~~---l~~~--~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
....+|.+++|+|..++.+-.+ .. +.+. ..+.|+++|.||+||..... ......+....+.+++.+||+++
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 4567899999999875432111 11 1111 13689999999999964321 12211222234567889999999
Q ss_pred cCHHHHHHHHHHHHh
Q 017187 113 SSVQKLLELVELKLK 127 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~ 127 (375)
.|++++++.+.+.+.
T Consensus 157 ~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 157 HNVKELFEGIVRQVR 171 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998877664
No 353
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.36 E-value=0.00017 Score=73.65 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhh-hccccc---ccccccccccC------CCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFP---VQEKTKRATVG------PLPGVTQDIAGFKIA-HRPSIYVLDTPG 202 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~---~~~k~~~~~v~------~~pg~T~~~~~~~i~-~~~~~~liDTPG 202 (375)
...+++++|.+|+|||||+|+|+.. +.+... ..++.....+. ...|+|.......+. .+..+.++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4578999999999999999999862 111000 00000001111 244566544322222 223588999999
Q ss_pred CCC
Q 017187 203 VLV 205 (375)
Q Consensus 203 i~~ 205 (375)
...
T Consensus 92 ~~d 94 (529)
T 2h5e_A 92 HED 94 (529)
T ss_dssp STT
T ss_pred Chh
Confidence 854
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.35 E-value=0.00019 Score=69.07 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=54.0
Q ss_pred HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHHHHHHHHh----hC-------CCcEEEEecC
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFD----SC-------KQDYIAINAH 110 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~~~~~~~~----~~-------g~~vi~iSa~ 110 (375)
....+|++++|+|+..+.... .+.....++|.++|+||+|+.+........+.++ .. ..+++++||+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~ 243 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ--GIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSAL 243 (341)
T ss_dssp HHTTCSEEEEEECC------C--CCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGG
T ss_pred HHHhCCEEEEEEeCCccHHHH--HHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCC
Confidence 468999999999986442211 1111112468899999999987533332222221 11 3467899999
Q ss_pred CccCHHHHHHHHHHHHh
Q 017187 111 SRSSVQKLLELVELKLK 127 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~ 127 (375)
++.|++.|++++.+.+.
T Consensus 244 ~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 244 EKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp GTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987664
No 355
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.35 E-value=0.00015 Score=68.68 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.-.++|+++|.+|||||||+|.|.+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999986
No 356
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.35 E-value=0.00024 Score=72.53 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=44.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
+-..|||.. ....+...+..+|.+|+|+|+..+.......+.+. ..+.|+++|+||+|+...
T Consensus 86 liDTPG~~d-f~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 86 LLDTPGHED-FSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp EECCCCSTT-CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred EEECCCChh-HHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 445899943 23456678999999999999987654333333332 347899999999999754
No 357
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=0.0004 Score=72.89 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=42.2
Q ss_pred ccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187 27 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA 85 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~ 85 (375)
..|||.. ....+...+..+|.+++|+|+..........+.+. ..+.|+++|+||+|+.
T Consensus 80 DTpG~~~-f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYGD-FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSGG-GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred eCCCccc-hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 3599954 33567788999999999999876654332223222 3578999999999987
No 358
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.35 E-value=0.00017 Score=74.66 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..+|+++|.+|+|||||+|+|++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999997
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=0.00041 Score=67.05 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=52.8
Q ss_pred HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChhhHH----HHHHHHhh-------CCCcEEEEecC
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILN----KWVRHFDS-------CKQDYIAINAH 110 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~~-------~g~~vi~iSa~ 110 (375)
..+.+|++++|+|+..+... ..+.......|.++|+||+|+.+..... .+...+.. ...+++++|++
T Consensus 184 l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~ 261 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR 261 (349)
T ss_dssp HHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTT
T ss_pred HHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecC
Confidence 46799999999998764321 1121112356889999999997643222 22222211 12467899999
Q ss_pred CccCHHHHHHHHHHHHh
Q 017187 111 SRSSVQKLLELVELKLK 127 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~~l~ 127 (375)
++.|+++|.++|.+.+.
T Consensus 262 ~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 262 SGEGISEMWDKMKDFQD 278 (349)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987753
No 360
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.32 E-value=0.00022 Score=70.75 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.-.++|+|+|.+|||||||+|.|.+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhC
Confidence 4457899999999999999999997
No 361
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.30 E-value=6.3e-05 Score=70.21 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHHHHhhhcCeEE-EEEeCCCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH-HhhC--C-CcEEEE
Q 017187 37 RAIKHRLKISDLVI-EVRDSRIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH-FDSC--K-QDYIAI 107 (375)
Q Consensus 37 ~~i~~~l~~~DlVI-~VvDar~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~-~~~~--g-~~vi~i 107 (375)
..+...+..+|.+| +|+|+..+.+.... .+.+. ..++|+++|+||+|+.++.. ...+.+. +... + ..++.+
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence 44556777888665 79999876655432 23333 34689999999999986533 2222211 1011 2 256788
Q ss_pred ecCCccCHHHHHHHHHHHH
Q 017187 108 NAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~l 126 (375)
||+++.|++++.+.+.+..
T Consensus 233 SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAER 251 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHH
Confidence 9999999999988887643
No 362
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.28 E-value=0.00011 Score=67.32 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=57.0
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc----cC---CCCEEEEEE-cCCCCChhhHHH------------HHHH
Q 017187 37 RAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ----LS---AKRRVIALN-KKDLANPNILNK------------WVRH 96 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~----~~---~kp~IiVlN-K~DL~~~~~~~~------------~~~~ 96 (375)
+.+...++.+|++|+|+|+.. +......+.+. .. .+|.++|+| |+|+.+.. ... +.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 344456788999999999974 33222222222 11 468888888 99998542 222 2222
Q ss_pred HhhCC--CcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 97 FDSCK--QDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 97 ~~~~g--~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
+.... ...+++||+++.|++++++.+.+.+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 22110 111678999999999999999887765
No 363
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.27 E-value=0.00039 Score=62.90 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=51.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCch-hHhhc------cCCCCEEEEEEcCCCCChhhHH--------HHHHHHhhCCCcEE
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHP-GLQPQ------LSAKRRVIALNKKDLANPNILN--------KWVRHFDSCKQDYI 105 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~-~l~~~------~~~kp~IiVlNK~DL~~~~~~~--------~~~~~~~~~g~~vi 105 (375)
...+.+|++|+|+|+.. ++.... .+..+ ...+|+++|+||+|+.+...+. ...+..++++..++
T Consensus 108 ~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC 186 (239)
T ss_dssp HTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE
T ss_pred hcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE
Confidence 33456799999999863 333222 22222 1236999999999998654333 22233345566677
Q ss_pred EEecCCc-----cCHHHHHHHHHHHHhh
Q 017187 106 AINAHSR-----SSVQKLLELVELKLKE 128 (375)
Q Consensus 106 ~iSa~~~-----~gvk~Ll~~L~~~l~~ 128 (375)
++++..+ .++.+|++.+...+.+
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7776643 5788888887776654
No 364
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.25 E-value=0.00042 Score=73.03 Aligned_cols=62 Identities=24% Similarity=0.203 Sum_probs=43.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
+-.-|||.. -...+...+..+|.+|+|+|+..+.+.....+... ..+.|+++|+||+|+...
T Consensus 81 liDTPG~~d-f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVD-FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTT-CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred EEECcCccc-hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 445899943 33456678899999999999987655433222222 357899999999999754
No 365
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.22 E-value=0.00046 Score=65.28 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=59.6
Q ss_pred cccchhHHHH----HHHHHHHhhhcCeEEEEEeCCCCCCCCch-h----Hhhc---cCCCCEEEEEEcCCCCChhhH---
Q 017187 26 NWFPGHMAAA----TRAIKHRLKISDLVIEVRDSRIPLSSAHP-G----LQPQ---LSAKRRVIALNKKDLANPNIL--- 90 (375)
Q Consensus 26 ~wfpgHm~k~----~~~i~~~l~~~DlVI~VvDar~p~s~~~~-~----l~~~---~~~kp~IiVlNK~DL~~~~~~--- 90 (375)
-..||+..-. .......++++|++|+|+|+..+.+..+. . +... ..+.|+++|+||+|+.+.+..
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~ 136 (307)
T 3r7w_A 57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL 136 (307)
T ss_dssp EEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred EECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH
Confidence 3478874321 12334567899999999999876433221 1 1121 247899999999999873322
Q ss_pred -----HHHHHHHhhCC---CcEEEEecCCccCHHHHHHHHH
Q 017187 91 -----NKWVRHFDSCK---QDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 91 -----~~~~~~~~~~g---~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
+...++.+..| .+++.+|+++ .++.+++..+.
T Consensus 137 ~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 137 FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 22223333444 5788999998 56655555443
No 366
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.21 E-value=0.00026 Score=62.86 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=52.3
Q ss_pred cCeEEEEEeCCCCCCCCchhHhhc-cCCCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHH
Q 017187 46 SDLVIEVRDSRIPLSSAHPGLQPQ-LSAKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 46 ~DlVI~VvDar~p~s~~~~~l~~~-~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
.+.+++|+|+..+.. ...... ..++|.++|+||+|+.+.. ......+.+++ ...+++.+|++++.|++++++
T Consensus 130 ~~~~i~vvd~~~~~~---~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD---VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp CSEEEEEEEGGGCTT---HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred cCcEEEEEeCCCcch---hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence 455667999875421 111111 2357899999999996431 23333444432 245789999999999999999
Q ss_pred HHHHHHhh
Q 017187 121 LVELKLKE 128 (375)
Q Consensus 121 ~L~~~l~~ 128 (375)
++.+.+..
T Consensus 207 ~l~~~~~~ 214 (221)
T 2wsm_A 207 FLRGILNV 214 (221)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99876643
No 367
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.20 E-value=0.00042 Score=71.06 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=50.4
Q ss_pred HhcccccceEEee--CC--CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEc
Q 017187 8 KKGLGLGEMGFTK--GG--GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNK 81 (375)
Q Consensus 8 ~~~~~~g~~~~~~--~~--~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK 81 (375)
.|||++-.+.... .. -++-.=|||..-. .++.+.+.-+|.+|.|+||......+-..+-+. ..+.|+|+++||
T Consensus 83 eRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~-~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 83 ERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS-EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNK 161 (548)
T ss_dssp -----CTTTEEEEEETTEEEEEECCCCGGGCS-HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HCCCcEeeceEEEEECCEEEEEEeCCCcHHHH-HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEec
Confidence 4566554444333 22 2244589996544 457788999999999999987665443333333 468999999999
Q ss_pred CCCCC
Q 017187 82 KDLAN 86 (375)
Q Consensus 82 ~DL~~ 86 (375)
+|...
T Consensus 162 ~Dr~~ 166 (548)
T 3vqt_A 162 MDREA 166 (548)
T ss_dssp TTSCC
T ss_pred ccchh
Confidence 99864
No 368
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.18 E-value=0.00071 Score=61.89 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=57.5
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCchhHhhc-c-------CCCCEEEEEEcCCCCChhhH--------HHHHHHHhhCCCcE
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAHPGLQPQ-L-------SAKRRVIALNKKDLANPNIL--------NKWVRHFDSCKQDY 104 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~~~l~~~-~-------~~kp~IiVlNK~DL~~~~~~--------~~~~~~~~~~g~~v 104 (375)
...+.+|++|+|+|+.. ++.....+.+. . .+.|+++|.||+||.+.... +......+.++..+
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 33489999999999864 33322222222 1 26789999999999754211 11233344567777
Q ss_pred EEEecCC-----ccCHHHHHHHHHHHHhh
Q 017187 105 IAINAHS-----RSSVQKLLELVELKLKE 128 (375)
Q Consensus 105 i~iSa~~-----~~gvk~Ll~~L~~~l~~ 128 (375)
+++++.. +.++++|++.+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7777655 47899999999888765
No 369
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.17 E-value=0.00035 Score=73.58 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhh-hccccccccc-ccccccCC------CCCeeeeeEEEEEc-cCCcEEEEEcCCCC
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQI-ALSRFPVQEK-TKRATVGP------LPGVTQDIAGFKIA-HRPSIYVLDTPGVL 204 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~-g~~~~~~~~k-~~~~~v~~------~pg~T~~~~~~~i~-~~~~~~liDTPGi~ 204 (375)
...+|+++|.+|+|||||+|+|+.. +.... .+. .....+.+ ..|+|.......+. .+..+.++||||..
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~--~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHK--IGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcc--cceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 4578999999999999999999852 11100 000 00011111 34556554432222 23358999999985
Q ss_pred C
Q 017187 205 V 205 (375)
Q Consensus 205 ~ 205 (375)
.
T Consensus 89 d 89 (691)
T 1dar_A 89 D 89 (691)
T ss_dssp T
T ss_pred c
Confidence 4
No 370
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.15 E-value=2.2e-05 Score=79.65 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=62.7
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchh-Hhhc-cCCCCEEEEEEcCCCCCh--hhHHHHHH---HH
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPG-LQPQ-LSAKRRVIALNKKDLANP--NILNKWVR---HF 97 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~-l~~~-~~~kp~IiVlNK~DL~~~--~~~~~~~~---~~ 97 (375)
+-..|||... ...+...+..+|++|+|+|+..+....... +... ..+.|+++++||+|+.+. +.....+. .+
T Consensus 55 ~iDTPGhe~f-~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~ 133 (501)
T 1zo1_I 55 FLDTPGHAAF-TSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGIL 133 (501)
T ss_dssp EECCCTTTCC-TTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred EEECCCcHHH-HHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence 4458898432 122234467899999999998754433322 2222 457899999999999743 11111100 01
Q ss_pred -hhC--CCcEEEEecCCccCHHHHHHHHHH
Q 017187 98 -DSC--KQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 98 -~~~--g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
+.. ..+++++||+++.|+++|++++..
T Consensus 134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 134 PEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 011 247899999999999999998754
No 371
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.13 E-value=0.0011 Score=59.56 Aligned_cols=87 Identities=7% Similarity=-0.068 Sum_probs=58.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCC-CchhH---hhc------cCCCCEEEEEEcC-CCCChhhHHHHHHHHh----hCCCcEE
Q 017187 41 HRLKISDLVIEVRDSRIPLSS-AHPGL---QPQ------LSAKRRVIALNKK-DLANPNILNKWVRHFD----SCKQDYI 105 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~-~~~~l---~~~------~~~kp~IiVlNK~-DL~~~~~~~~~~~~~~----~~g~~vi 105 (375)
.+.+++|.||+|||+.+..-. .-.++ ... ..+.|++|..||. |+.......+..+.+. .....+.
T Consensus 121 ~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq 200 (227)
T 3l82_B 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 200 (227)
T ss_dssp HHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred HHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEE
Confidence 568999999999999654211 11223 111 2467889889995 7754433444444442 2344688
Q ss_pred EEecCCccCHHHHHHHHHHHHh
Q 017187 106 AINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+||.+|+|+.+-++||.+.+.
T Consensus 201 ~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 201 DTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEETTTCTTHHHHHHHHTTTTT
T ss_pred EeECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999876553
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.13 E-value=0.00016 Score=72.65 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++|+++|.+|+|||||+|+|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4568999999999999999999975
No 373
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.12 E-value=0.00037 Score=76.65 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=38.5
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHhhhcccccccccc--------cccccCCCCCeeeeeEEEEEc-cCCcEEEEEcCC
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKT--------KRATVGPLPGVTQDIAGFKIA-HRPSIYVLDTPG 202 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~--------~~~~v~~~pg~T~~~~~~~i~-~~~~~~liDTPG 202 (375)
....++|+++|.+|+|||||+|+|.+.... .++. .........|+|.+...+.+. ....+.++||||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~----~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAK----TYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHH----HSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhcc----ccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 345689999999999999999999862100 0000 001122356778776543333 234689999999
Q ss_pred CC
Q 017187 203 VL 204 (375)
Q Consensus 203 i~ 204 (375)
..
T Consensus 369 He 370 (1289)
T 3avx_A 369 HA 370 (1289)
T ss_dssp HH
T ss_pred hH
Confidence 74
No 374
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.12 E-value=6.9e-05 Score=76.58 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=65.9
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCChh--hHHHHHHHHh--
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANPN--ILNKWVRHFD-- 98 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~-- 98 (375)
+-..|||-. ....+...+..+|++|+|+|+..+........... ..+.|+++|+||+|+.+.. .....+..+.
T Consensus 56 ~iDTPGhe~-f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~ 134 (537)
T 3izy_P 56 FLDTPGHAA-FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVV 134 (537)
T ss_dssp CEECSSSCC-TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSC
T ss_pred EEECCChHH-HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhh
Confidence 445789832 12222345678999999999987654432222222 3578999999999997432 1111221111
Q ss_pred --hC--CCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 99 --SC--KQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 99 --~~--g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.. ..+++++||+++.|+++|++.+...+.
T Consensus 135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 135 CEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 11 236788999999999999999987764
No 375
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.11 E-value=0.0014 Score=69.25 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=44.1
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
+-.-|||.. ....+...+..+|.+|+|+|+..........+.+. ..+.|+++|+||+|+...
T Consensus 86 liDTPG~~d-f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVD-FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccc-hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 445899964 33456678899999999999987654332222222 357899999999998753
No 376
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.09 E-value=0.0005 Score=72.44 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=43.4
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCCCh
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLANP 87 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~ 87 (375)
+-.-|||.. -...+...+..+|.+|+|+|+..+.+.....+.+. ..+.|+++|+||+|+...
T Consensus 79 liDTPG~~d-f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 79 IIDTPGHVD-FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EECCCCCSS-CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred EEECcCCcc-hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 345788843 22345677889999999999987655433322222 357899999999999754
No 377
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.03 E-value=0.00057 Score=65.48 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeEEEEEccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~~~~i~~~~~~~liDTPGi~~~ 206 (375)
+++++|.+|||||||++.+.+. ... ...... +.|.......+...-.+.++||||-...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~------~~~~~~----~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQP------LDTLYL----ESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCS------GGGTTC----CCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCC------Ccccee----cCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 4789999999999999987641 000 001112 2232222112222235899999997654
No 378
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.02 E-value=0.00089 Score=70.99 Aligned_cols=85 Identities=9% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHh-hhcCeEEEEEeCCCCCCCCch-hHhhc--cCCCCEEEEEEcCCCCChhhH-HHHHH--HHh-hCC-CcEEEEecC
Q 017187 40 KHRL-KISDLVIEVRDSRIPLSSAHP-GLQPQ--LSAKRRVIALNKKDLANPNIL-NKWVR--HFD-SCK-QDYIAINAH 110 (375)
Q Consensus 40 ~~~l-~~~DlVI~VvDar~p~s~~~~-~l~~~--~~~kp~IiVlNK~DL~~~~~~-~~~~~--~~~-~~g-~~vi~iSa~ 110 (375)
.+.+ ..+|+|++|+|++.++...+. .+.+. ..++|+|+|+||+|++++... ..+.. .+. ..+ ..++++||+
T Consensus 181 ~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~ 260 (772)
T 3zvr_A 181 MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 260 (772)
T ss_dssp HHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCE
T ss_pred HHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccc
Confidence 3444 588999999999987776654 34443 346899999999999876432 12211 000 112 257789999
Q ss_pred CccCHHHHHHHHHH
Q 017187 111 SRSSVQKLLELVEL 124 (375)
Q Consensus 111 ~~~gvk~Ll~~L~~ 124 (375)
++.|+++|.+.+.+
T Consensus 261 ~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 261 DIDGKKDITAALAA 274 (772)
T ss_dssp ESSSSEEHHHHHHH
T ss_pred ccccchhHHHHHHH
Confidence 99999998888875
No 379
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.95 E-value=0.00038 Score=72.63 Aligned_cols=79 Identities=18% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHhcccccceEEeeCC----CcccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEE
Q 017187 7 IKKGLGLGEMGFTKGG----GNINWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALN 80 (375)
Q Consensus 7 ~~~~~~~g~~~~~~~~----~~~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlN 80 (375)
..|||++-.+.....- -++-.=|||..-. .++...+.-+|.+|.|+||......+-..+.+. ..+.|+|+++|
T Consensus 49 reRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~IN 127 (638)
T 3j25_A 49 RQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFIN 127 (638)
T ss_dssp HHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCE
T ss_pred HhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 3567765444333332 2234479996544 557889999999999999988766544444333 45789999999
Q ss_pred cCCCCC
Q 017187 81 KKDLAN 86 (375)
Q Consensus 81 K~DL~~ 86 (375)
|+|...
T Consensus 128 KmDr~~ 133 (638)
T 3j25_A 128 KIDQNG 133 (638)
T ss_dssp ECCSSS
T ss_pred cccccc
Confidence 999753
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.88 E-value=0.00057 Score=69.30 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.....|+++|.|||||||++|.|..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.82 E-value=0.00026 Score=62.63 Aligned_cols=86 Identities=22% Similarity=0.183 Sum_probs=43.1
Q ss_pred ccchhHHHHHHHHHHHhhh----cCeEEEEEeCC-CCCCCC--chhHhhcc--------CCCCEEEEEEcCCCCChhhHH
Q 017187 27 WFPGHMAAATRAIKHRLKI----SDLVIEVRDSR-IPLSSA--HPGLQPQL--------SAKRRVIALNKKDLANPNILN 91 (375)
Q Consensus 27 wfpgHm~k~~~~i~~~l~~----~DlVI~VvDar-~p~s~~--~~~l~~~~--------~~kp~IiVlNK~DL~~~~~~~ 91 (375)
..|||.. ....+...+.. +|++|+|+|+. .+.+.. ...+.+.. .+.|+++|+||+|+.+.....
T Consensus 61 Dt~G~~~-~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 61 DFPGHVK-LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp ECCCCGG-GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ECCCcHH-HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 4677632 11223344444 99999999998 432221 11222221 478999999999998654333
Q ss_pred HHHHHH--------hhCCCcEEEEecCCcc
Q 017187 92 KWVRHF--------DSCKQDYIAINAHSRS 113 (375)
Q Consensus 92 ~~~~~~--------~~~g~~vi~iSa~~~~ 113 (375)
.+.+.+ ...+..++.+|++++.
T Consensus 140 ~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 140 KIKDALESEIQKVIERRKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 222211 1223345667777654
No 382
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.81 E-value=0.00029 Score=64.36 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.....++++|.+||||||+++.|..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4457889999999999999999973
No 383
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.78 E-value=0.0016 Score=68.80 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...+|+|+|.+|+|||||++.|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 384
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.76 E-value=0.00087 Score=72.16 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...+|+|+|.+|+|||||+|+|+.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~ 41 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQ 41 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.76 E-value=0.0021 Score=55.94 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChhh--HHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPNI--LNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
.....+|.+++|+|...+.+..+ ..+..+ ....|+++|+||+||.+... ......+..+.+..++.+|++++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45678999999999876533221 111111 23578999999999964321 12233333455677888999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 017187 113 SSVQKLLELVELKLKE 128 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l~~ 128 (375)
.+++++++.+.+.+..
T Consensus 153 ~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 153 TNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998876644
No 386
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.75 E-value=0.00068 Score=70.14 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+++++|.+|+|||||+|+|+.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 387
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.74 E-value=0.00069 Score=70.11 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh-hhccccccccccccccc------CCCCCeeeeeEEEEE--c--cC--CcEEEEEcC
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ-IALSRFPVQEKTKRATV------GPLPGVTQDIAGFKI--A--HR--PSIYVLDTP 201 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k~~~~~v------~~~pg~T~~~~~~~i--~--~~--~~~~liDTP 201 (375)
..+++++|.+|+|||||+++|+. .|.+... .....+ ....|.|.......+ . .+ ..+.++|||
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~----~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP 79 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDR----EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP 79 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC------------------------------CEEEEEEECTTSCEEEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccc----cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC
Confidence 45899999999999999999986 2222110 000111 113466665443222 2 11 247899999
Q ss_pred CCCC
Q 017187 202 GVLV 205 (375)
Q Consensus 202 Gi~~ 205 (375)
|...
T Consensus 80 Gh~d 83 (599)
T 3cb4_D 80 GHVD 83 (599)
T ss_dssp CCGG
T ss_pred CchH
Confidence 9854
No 388
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.73 E-value=0.00056 Score=62.78 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCC---------CCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVP---------NVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~p---------nvGKSsliN~L~~ 157 (375)
....++|+++|.| |||||||+|.|.+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3556899999999 9999999999996
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.69 E-value=0.0025 Score=56.60 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred CCCEEEEEEcCCCCChh--hHHHHHHHHhh--CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 72 AKRRVIALNKKDLANPN--ILNKWVRHFDS--CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 72 ~kp~IiVlNK~DL~~~~--~~~~~~~~~~~--~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+|.++|+||+|+.+.. ..+...++++. .+.+++.+|++++.|++++++.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 35669999999996532 23333333332 3457899999999999999999877654
No 390
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=64.08 Aligned_cols=76 Identities=5% Similarity=-0.036 Sum_probs=40.0
Q ss_pred CeEEEEEeC-CCCCCCCchhHhh-ccCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHHH
Q 017187 47 DLVIEVRDS-RIPLSSAHPGLQP-QLSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLLE 120 (375)
Q Consensus 47 DlVI~VvDa-r~p~s~~~~~l~~-~~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll~ 120 (375)
|++++++|. +.++...+..+.+ +..+.|+|+|+||+|+.+...+.. ..+.....+.+++.+|++++.+ ++.+.
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHH
Confidence 568888875 4444433222222 245689999999999987654433 3333444567888999998876 44443
Q ss_pred HHH
Q 017187 121 LVE 123 (375)
Q Consensus 121 ~L~ 123 (375)
.+.
T Consensus 226 ~l~ 228 (361)
T 2qag_A 226 EQT 228 (361)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 391
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.62 E-value=0.00064 Score=66.90 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCChhhHHHHHHHHhhCCCcEEEEecCCccCHHHH
Q 017187 72 AKRRVIALNKKDLANPNILNKWVRHFDSCKQDYIAINAHSRSSVQKL 118 (375)
Q Consensus 72 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~g~~vi~iSa~~~~gvk~L 118 (375)
.+|+++|+||+|+.....+..+.+.+...+.+++++||+.+.++.++
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L 260 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKA 260 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHH
Confidence 49999999999998544445555555434668999999988877664
No 392
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.0056 Score=57.52 Aligned_cols=87 Identities=7% Similarity=-0.044 Sum_probs=59.3
Q ss_pred HHhhhcCeEEEEEeCCCCCCCC-chhHh---hc------cCCCCEEEEEEc-CCCCChhhHHHHHHHHh----hCCCcEE
Q 017187 41 HRLKISDLVIEVRDSRIPLSSA-HPGLQ---PQ------LSAKRRVIALNK-KDLANPNILNKWVRHFD----SCKQDYI 105 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~-~~~l~---~~------~~~kp~IiVlNK-~DL~~~~~~~~~~~~~~----~~g~~vi 105 (375)
.+.+++|.||+|||+.+..--. -.++. .. ..+.|++|..|| .|+.......+..+.+. .....+.
T Consensus 206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq 285 (312)
T 3l2o_B 206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 285 (312)
T ss_dssp HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEE
Confidence 5689999999999996542211 11222 11 257899999997 58865433444444442 2234688
Q ss_pred EEecCCccCHHHHHHHHHHHHh
Q 017187 106 AINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 106 ~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+||.+|+|+.+-++|+.+.+.
T Consensus 286 ~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 286 DTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp EEETTTCTTHHHHHHHHHHHSC
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 393
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.49 E-value=0.00062 Score=65.92 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHhhhcCeEEEEEeCCCCCCC------Cc--h----hHhhc-----cCCCCEEEEEEcCCCCChh---------------
Q 017187 41 HRLKISDLVIEVRDSRIPLSS------AH--P----GLQPQ-----LSAKRRVIALNKKDLANPN--------------- 88 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~------~~--~----~l~~~-----~~~kp~IiVlNK~DL~~~~--------------- 88 (375)
...++++.||+|+|....-+. .+ . .+... ..+.|+|+|+||+||....
T Consensus 212 ~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g 291 (353)
T 1cip_A 212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 291 (353)
T ss_dssp GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCS
T ss_pred HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCC
Confidence 457899999999998753210 11 1 11111 2468999999999985211
Q ss_pred --hHHHHHHHHh-----------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 89 --ILNKWVRHFD-----------SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 89 --~~~~~~~~~~-----------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
..++..+++. ..+..++.+||+++.|++.+++++.+.+..
T Consensus 292 ~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 292 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp CSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 1222333332 134467889999999999999988776643
No 394
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.49 E-value=0.0034 Score=66.21 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=46.2
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA 85 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~ 85 (375)
+-.=|||..-. .++...++-+|.+|.|+||-.....+-..+.+. ..+.|+++++||+|..
T Consensus 89 lIDTPGHvDF~-~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFT-IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCH-HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred EEeCCCCcccH-HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 45679997654 557889999999999999987766544444333 4579999999999975
No 395
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.49 E-value=0.0017 Score=57.62 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhhhcccccccccccccccCCCCCeeeeeE
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQIALSRFPVQEKTKRATVGPLPGVTQDIA 185 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~g~~~~~~~~k~~~~~v~~~pg~T~~~~ 185 (375)
.+-.++++|.+|||||||+|.|.+. .........+.|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~----------~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ----------NPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH----------CTTTEECCCCEECSCCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh----------CCccEEeeecccccCCc
Confidence 4457889999999999999999972 11123445567787664
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.48 E-value=0.0035 Score=55.60 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....+++++|.+|||||||+|.|..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4568899999999999999999986
No 397
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.39 E-value=0.0041 Score=65.15 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....+++++|.+|+|||||++.|.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHH
Confidence 3467899999999999999999985
No 398
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.38 E-value=0.0074 Score=57.86 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=51.6
Q ss_pred HhhhcCeEEEEEeCCCCCCCCchhHhhccCCCCEEEEEEcCCCCChh-hHHHHHHHHhh-----C------CCcEEEEec
Q 017187 42 RLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPN-ILNKWVRHFDS-----C------KQDYIAINA 109 (375)
Q Consensus 42 ~l~~~DlVI~VvDar~p~s~~~~~l~~~~~~kp~IiVlNK~DL~~~~-~~~~~~~~~~~-----~------g~~vi~iSa 109 (375)
..+.+|++++|+|+..+... ..+.......+.++|+||+|+.+.. ......+.+.. . ..+++++|+
T Consensus 165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa 242 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG 242 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence 35789999999998533110 1111111134668889999986532 22122222210 1 246889999
Q ss_pred CCccCHHHHHHHHHHHHh
Q 017187 110 HSRSSVQKLLELVELKLK 127 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~~l~ 127 (375)
.++.|+++|.+.+.+...
T Consensus 243 l~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 243 LHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987754
No 399
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.32 E-value=0.00085 Score=65.20 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=55.8
Q ss_pred HHhhhcCeEEEEEeCCCCCC------CCch------hHhhc-----cCCCCEEEEEEcCCCCCh----------------
Q 017187 41 HRLKISDLVIEVRDSRIPLS------SAHP------GLQPQ-----LSAKRRVIALNKKDLANP---------------- 87 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s------~~~~------~l~~~-----~~~kp~IiVlNK~DL~~~---------------- 87 (375)
..+++++.||+|+|....-. +.+. .+... ..+.|+|+|+||+||...
T Consensus 220 ~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g 299 (362)
T 1zcb_A 220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG 299 (362)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccC
Confidence 45789999999999875210 0111 11111 246899999999998521
Q ss_pred --hhHHHHHHHH----h-------hCCCcEEEEecCCccCHHHHHHHHHHHHhh
Q 017187 88 --NILNKWVRHF----D-------SCKQDYIAINAHSRSSVQKLLELVELKLKE 128 (375)
Q Consensus 88 --~~~~~~~~~~----~-------~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~~ 128 (375)
...++..+++ . ..+..++.+||+++.+++.+++.+.+.+..
T Consensus 300 ~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 300 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 1122333332 1 123567889999999999999988776543
No 400
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.30 E-value=0.0062 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-..|.|+|.+++|||+|+|.|++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHHH
Confidence 345677999999999999998864
No 401
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.25 E-value=0.005 Score=54.39 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 116 QKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 116 k~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++.+.+.+.+. ...+..++|+|.+|+|||||++.|.+
T Consensus 5 ~~~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 5 AALCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554444321 35677899999999999999999987
No 402
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.15 E-value=0.0068 Score=52.52 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=56.7
Q ss_pred HHhhhcCeEEEEEeCCCCCCCCc--hhHhhc----cCCCCEEEEEEcCCCCChh--hHHHHHHHHhhCCCcEEEEecCCc
Q 017187 41 HRLKISDLVIEVRDSRIPLSSAH--PGLQPQ----LSAKRRVIALNKKDLANPN--ILNKWVRHFDSCKQDYIAINAHSR 112 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p~s~~~--~~l~~~----~~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~g~~vi~iSa~~~ 112 (375)
.....+|.++.|+|...+.+..+ ..+..+ ....|+++|+||+||.+.. .......+..+.+..++.+|++++
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 45678899999999865432111 112111 2357899999999996431 122233333455677888999999
Q ss_pred cCHHHHHHHHHHHH
Q 017187 113 SSVQKLLELVELKL 126 (375)
Q Consensus 113 ~gvk~Ll~~L~~~l 126 (375)
.+++++++.+.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999887643
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.13 E-value=0.0015 Score=65.00 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..++++|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 404
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.94 E-value=0.0058 Score=58.83 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=52.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCC-CCCCCc-hhHhh-c-cCCCCEEEEEEcCCCCChhh-HHHHHHHH-hhCCCcEEEEecC
Q 017187 37 RAIKHRLKISDLVIEVRDSRI-PLSSAH-PGLQP-Q-LSAKRRVIALNKKDLANPNI-LNKWVRHF-DSCKQDYIAINAH 110 (375)
Q Consensus 37 ~~i~~~l~~~DlVI~VvDar~-p~s~~~-~~l~~-~-~~~kp~IiVlNK~DL~~~~~-~~~~~~~~-~~~g~~vi~iSa~ 110 (375)
..+...+.++|+||+|+|+.. ...... ..+.+ + ..++|.++|+||+|++++.. .....+.+ ...+..++.+++.
T Consensus 164 ~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 243 (360)
T 3t34_A 164 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNR 243 (360)
T ss_dssp HHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCC
T ss_pred HHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEEC
Confidence 455677899999999998643 222111 12222 2 34679999999999986532 11212111 1234567889999
Q ss_pred CccCHHHHHHHH
Q 017187 111 SRSSVQKLLELV 122 (375)
Q Consensus 111 ~~~gvk~Ll~~L 122 (375)
++.++++.....
T Consensus 244 s~~~i~~~~~~~ 255 (360)
T 3t34_A 244 SQADINKNVDMI 255 (360)
T ss_dssp CHHHHHTTCCHH
T ss_pred ChHHhccCCCHH
Confidence 888776654443
No 405
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.88 E-value=0.0019 Score=62.15 Aligned_cols=86 Identities=8% Similarity=0.111 Sum_probs=52.9
Q ss_pred HHHHhh-hcCeEEEEEeCCCCCCCCchh-Hhhc--cCCCCEEEEEEcCCCCChhh-HHHHHHH--Hh-hCCC-cEEEEec
Q 017187 39 IKHRLK-ISDLVIEVRDSRIPLSSAHPG-LQPQ--LSAKRRVIALNKKDLANPNI-LNKWVRH--FD-SCKQ-DYIAINA 109 (375)
Q Consensus 39 i~~~l~-~~DlVI~VvDar~p~s~~~~~-l~~~--~~~kp~IiVlNK~DL~~~~~-~~~~~~~--~~-~~g~-~vi~iSa 109 (375)
+...+. ..++|++|+|+..++...... +.+. ..++|.++|+||+|+.++.. ...+.+. +. ..++ .++.+|+
T Consensus 160 ~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA 239 (353)
T 2x2e_A 160 LMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 239 (353)
T ss_dssp HHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCH
T ss_pred HHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCc
Confidence 334453 456777788887655544321 3332 34689999999999986533 2222211 00 1122 4667899
Q ss_pred CCccCHHHHHHHHHH
Q 017187 110 HSRSSVQKLLELVEL 124 (375)
Q Consensus 110 ~~~~gvk~Ll~~L~~ 124 (375)
+++.|++++.+.+..
T Consensus 240 ~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 240 KDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHTTCCHHHHHHH
T ss_pred ccccccccHHHHHHH
Confidence 999999888888765
No 406
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.73 E-value=0.0061 Score=52.59 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.||+|||||+|.|.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999987
No 407
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.70 E-value=0.0078 Score=62.38 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 017187 137 LVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.++|+|.+|+|||||+|+|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999973
No 408
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0071 Score=51.91 Aligned_cols=57 Identities=25% Similarity=0.127 Sum_probs=35.4
Q ss_pred HHhhhcCeEEEEEeCC-CCCCCCc--hhHhhcc--------CCCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187 41 HRLKISDLVIEVRDSR-IPLSSAH--PGLQPQL--------SAKRRVIALNKKDLANPNILNKWVRHF 97 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar-~p~s~~~--~~l~~~~--------~~kp~IiVlNK~DL~~~~~~~~~~~~~ 97 (375)
..+..+|++|+|+|+. .+.+... ..+..+. .+.|+++|+||+|+.+........+.+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 4456699999999997 3211100 1122221 378999999999998765444444443
No 409
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.60 E-value=0.011 Score=60.50 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=40.2
Q ss_pred HHHHHhhhcCeEEEEEeCCCC-CCCCchhHhhc--cCCCCEEEEEEcCCCCChhhHHHHHHHH
Q 017187 38 AIKHRLKISDLVIEVRDSRIP-LSSAHPGLQPQ--LSAKRRVIALNKKDLANPNILNKWVRHF 97 (375)
Q Consensus 38 ~i~~~l~~~DlVI~VvDar~p-~s~~~~~l~~~--~~~kp~IiVlNK~DL~~~~~~~~~~~~~ 97 (375)
.+...+..+|+||+|+|+..+ .......+.+. ..+.|+++|+||+|++++..+....+.+
T Consensus 181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 345678899999999999764 22222222222 2357899999999999876655544433
No 410
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.52 E-value=0.0045 Score=59.23 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=66.1
Q ss_pred cccceEEeeCCCcc-cc-cchhHHHHHHHHHHHhhhcCeEEEEEeCCC------CCCCCch------hHhhc-----cCC
Q 017187 12 GLGEMGFTKGGGNI-NW-FPGHMAAATRAIKHRLKISDLVIEVRDSRI------PLSSAHP------GLQPQ-----LSA 72 (375)
Q Consensus 12 ~~g~~~~~~~~~~~-~w-fpgHm~k~~~~i~~~l~~~DlVI~VvDar~------p~s~~~~------~l~~~-----~~~ 72 (375)
|+....+.....+. -| ..|+ .+-.+......++++.||+|+|... ..++.+. .+... ..+
T Consensus 156 Gi~~~~~~~~~v~l~iwDtgGQ-e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 156 GIIEYPFDLQSVIFRMVDVGGQ-RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp SEEEEEEEETTEEEEEEEECCS-HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred eEEEEEEEeeceeeEEEEcCCc-hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 33444444444332 23 3344 2222333346789999999997641 1112221 11211 246
Q ss_pred CCEEEEEEcCCCCChh------------------hHHHHHHHH----h------hCCCcEEEEecCCccCHHHHHHHHHH
Q 017187 73 KRRVIALNKKDLANPN------------------ILNKWVRHF----D------SCKQDYIAINAHSRSSVQKLLELVEL 124 (375)
Q Consensus 73 kp~IiVlNK~DL~~~~------------------~~~~~~~~~----~------~~g~~vi~iSa~~~~gvk~Ll~~L~~ 124 (375)
.|+++++||+||.... ..++..+|+ . +.+..++.+||++..+++.+...+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 8999999999985321 122333332 1 12345678899999999999998887
Q ss_pred HHhh
Q 017187 125 KLKE 128 (375)
Q Consensus 125 ~l~~ 128 (375)
.+-.
T Consensus 315 ~Il~ 318 (327)
T 3ohm_A 315 TILQ 318 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 411
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.52 E-value=0.0056 Score=58.84 Aligned_cols=115 Identities=17% Similarity=0.086 Sum_probs=64.4
Q ss_pred ccccceEEeeCCCcc-cc-cchhHHHHHHHHHHHhhhcCeEEEEEeCCCC------CCCCch------hHhhc-----cC
Q 017187 11 LGLGEMGFTKGGGNI-NW-FPGHMAAATRAIKHRLKISDLVIEVRDSRIP------LSSAHP------GLQPQ-----LS 71 (375)
Q Consensus 11 ~~~g~~~~~~~~~~~-~w-fpgHm~k~~~~i~~~l~~~DlVI~VvDar~p------~s~~~~------~l~~~-----~~ 71 (375)
+|+....+.....+. -| ..|+ .+-........+.++.||+|+|...- ....+. .+... ..
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQ-e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQ-RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSC-HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeEEEEEEeeeeeeccccCCCc-ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 444455555544332 23 4455 33333344568999999999998620 011111 11111 25
Q ss_pred CCCEEEEEEcCCCCChh-----------------hHHHHH----HHH------hh-----------------CCCcEEEE
Q 017187 72 AKRRVIALNKKDLANPN-----------------ILNKWV----RHF------DS-----------------CKQDYIAI 107 (375)
Q Consensus 72 ~kp~IiVlNK~DL~~~~-----------------~~~~~~----~~~------~~-----------------~g~~vi~i 107 (375)
+.|+++++||+||.... ..++.. +.| .. ....++.+
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 68999999999985321 112222 222 10 12345678
Q ss_pred ecCCccCHHHHHHHHHHHH
Q 017187 108 NAHSRSSVQKLLELVELKL 126 (375)
Q Consensus 108 Sa~~~~gvk~Ll~~L~~~l 126 (375)
||++..+++.++..+.+.+
T Consensus 308 sA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 308 NATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHH
Confidence 9999999988888776654
No 412
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0069 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
-.++|+|.+|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 413
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.49 E-value=0.0073 Score=58.39 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHhhhcCeEEEEEeCCC------CCCCCc--h----hHhhc-----cCCCCEEEEEEcCCCCChh---------------
Q 017187 41 HRLKISDLVIEVRDSRI------PLSSAH--P----GLQPQ-----LSAKRRVIALNKKDLANPN--------------- 88 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~------p~s~~~--~----~l~~~-----~~~kp~IiVlNK~DL~~~~--------------- 88 (375)
...++++.+|+|+|... .....+ . .+... ..+.|+++|+||+||....
T Consensus 202 ~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y 281 (354)
T 2xtz_A 202 HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY 281 (354)
T ss_dssp GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTC
T ss_pred HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccccccccccc
Confidence 35689999999999751 001111 1 11111 2468999999999984211
Q ss_pred --------hHHHHHHHHhh----------------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 89 --------ILNKWVRHFDS----------------CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 89 --------~~~~~~~~~~~----------------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
..++..+++.+ ....++.+||+++.+++++++.+.+.+.
T Consensus 282 ~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 282 QPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 01222222211 1223578999999999999998876654
No 414
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.46 E-value=0.008 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
+++++|.+|+|||||++.|.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 415
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.42 E-value=0.0082 Score=52.67 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
|+|+|.|||||+||++.|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 416
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.40 E-value=0.01 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.||+|||||++.|.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999986
No 417
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.24 E-value=0.011 Score=56.59 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=50.0
Q ss_pred HHHhhhcCeEEEEEeCCCCCCCCchhHhhc-------cCCCCEEEEEEcCCCCChhhH--------HHHHHHHhh-----
Q 017187 40 KHRLKISDLVIEVRDSRIPLSSAHPGLQPQ-------LSAKRRVIALNKKDLANPNIL--------NKWVRHFDS----- 99 (375)
Q Consensus 40 ~~~l~~~DlVI~VvDar~p~s~~~~~l~~~-------~~~kp~IiVlNK~DL~~~~~~--------~~~~~~~~~----- 99 (375)
....+.++.+|+|+|+...+......+.++ ..+.|+++|.||+||.+++.. .+..+.+.+
T Consensus 67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 356789999999999987621111122111 246899999999999875321 111122323
Q ss_pred CCCcEEEEecCCccCHHHHHHHHH
Q 017187 100 CKQDYIAINAHSRSSVQKLLELVE 123 (375)
Q Consensus 100 ~g~~vi~iSa~~~~gvk~Ll~~L~ 123 (375)
.+..++.+|+++ .++.+....+.
T Consensus 147 ~~i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 147 VQVSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp CCEEEECCCSSS-SHHHHHHHHHH
T ss_pred cCceEEEeccCC-CcHHHHHHHHH
Confidence 234667789987 45666554443
No 418
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.13 E-value=0.013 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 44689999999999999999997
No 419
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.03 E-value=0.014 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.+-.++++|.+|+|||||+|.|.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999973
No 420
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.01 E-value=0.012 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.|||||||+.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999986
No 421
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.92 E-value=0.037 Score=51.84 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhh--hccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 115 VQKLLELVELKLKEV--ISREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 115 vk~Ll~~L~~~l~~~--~~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
++.+++.|.+.+... .....+..|+|+|.+|+|||||.+.|.+
T Consensus 9 ~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 9 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444555554444332 2235678899999999999999999986
No 422
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.90 E-value=0.016 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++|+|.+|+|||||++.|.+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999999997
No 423
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.89 E-value=0.014 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++|.+|+|||||++.|.+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999997
No 424
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.88 E-value=0.036 Score=48.47 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.+|+||||+.+.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999986
No 425
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.87 E-value=0.02 Score=56.28 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=53.4
Q ss_pred HHhhhcCeEEEEEeCCCC---C---CCCch------hHhhc-----cCCCCEEEEEEcCCCCChhh--------------
Q 017187 41 HRLKISDLVIEVRDSRIP---L---SSAHP------GLQPQ-----LSAKRRVIALNKKDLANPNI-------------- 89 (375)
Q Consensus 41 ~~l~~~DlVI~VvDar~p---~---s~~~~------~l~~~-----~~~kp~IiVlNK~DL~~~~~-------------- 89 (375)
...++++.||+|+|...- + .+.+. .+... ..+.|+++|+||+||.....
T Consensus 236 ~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y 315 (402)
T 1azs_C 236 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEF 315 (402)
T ss_dssp GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGG
T ss_pred hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccc
Confidence 457899999999998750 0 01111 11111 24679999999999843211
Q ss_pred ------------------HHHHHHH----Hhh---------CCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 90 ------------------LNKWVRH----FDS---------CKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 90 ------------------~~~~~~~----~~~---------~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
.+....| |.+ .+..++.+||+++.+++.++..+.+.+.
T Consensus 316 ~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 316 ARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp GTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 1111122 111 1334568899999999999998876654
No 426
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.87 E-value=0.017 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.+..++++|.||+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999873
No 427
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.83 E-value=0.014 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++|+|.+|+|||||++.|.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999997
No 428
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.77 E-value=0.027 Score=48.14 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhccCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 115 VQKLLELVELKLKEVISREPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 115 vk~Ll~~L~~~l~~~~~~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++.++.+...+... ....+-.++++|.||+|||||++++.+
T Consensus 19 ~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445555565555432 112345789999999999999999986
No 429
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.73 E-value=0.013 Score=57.93 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=38.3
Q ss_pred cCeEEEEEeCC-CCCCCCch-hHhhccCCCCEEEEEEcCCCCChhhHHH----HHHHHhhCCCcEEEEecCCccCHHHHH
Q 017187 46 SDLVIEVRDSR-IPLSSAHP-GLQPQLSAKRRVIALNKKDLANPNILNK----WVRHFDSCKQDYIAINAHSRSSVQKLL 119 (375)
Q Consensus 46 ~DlVI~VvDar-~p~s~~~~-~l~~~~~~kp~IiVlNK~DL~~~~~~~~----~~~~~~~~g~~vi~iSa~~~~gvk~Ll 119 (375)
+++||++.++. ..+...+. .+..+..+.++|+|+||+|+.++..+.. ..+.+...+.+++.+|+.++.++.++.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence 45566666553 33433222 2233345789999999999987654433 333444457778888998888887765
Q ss_pred HHHHHHH
Q 017187 120 ELVELKL 126 (375)
Q Consensus 120 ~~L~~~l 126 (375)
..+...+
T Consensus 219 ~~l~~~i 225 (418)
T 2qag_C 219 KKIKDRL 225 (418)
T ss_dssp ------C
T ss_pred HHHHhhC
Confidence 5554443
No 430
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.73 E-value=0.019 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.+|+|||||++.|.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 455789999999999999999987
No 431
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.66 E-value=0.021 Score=53.71 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=33.3
Q ss_pred cCCCCEEEEEEcCCCCChhhHH----HHHHHHhhCCCcEEEEecCCccCHHHHHHHHHHHHh
Q 017187 70 LSAKRRVIALNKKDLANPNILN----KWVRHFDSCKQDYIAINAHSRSSVQKLLELVELKLK 127 (375)
Q Consensus 70 ~~~kp~IiVlNK~DL~~~~~~~----~~~~~~~~~g~~vi~iSa~~~~gvk~Ll~~L~~~l~ 127 (375)
....++++|+||+|+..+.... ...++.+..+..++.+|++++ ++++++..+.+.+.
T Consensus 153 ~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 153 HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 3456899999999998754332 333444556778889999999 99998877766654
No 432
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.65 E-value=0.021 Score=49.99 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.+|+|||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999987
No 433
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.60 E-value=0.022 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 434
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.56 E-value=0.027 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.||+||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999976
No 435
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.52 E-value=0.022 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.||+||||+.+.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999986
No 436
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.47 E-value=0.01 Score=63.84 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=43.0
Q ss_pred ccccchhHHHHHHHHHHHhhhcCeEEEEEeCCCCCCCCchhHhhc--cCCCCEEEEEEcCCCC
Q 017187 25 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQ--LSAKRRVIALNKKDLA 85 (375)
Q Consensus 25 ~~wfpgHm~k~~~~i~~~l~~~DlVI~VvDar~p~s~~~~~l~~~--~~~kp~IiVlNK~DL~ 85 (375)
+-.-|||.. ....+...+..+|.+|+|+|+..+.+.....+... ..+.|+++|+||+|+.
T Consensus 102 liDTPG~~d-f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 102 LIDSPGHVD-FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EECCCCCCS-SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred EEECcCchh-hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 445788854 23356678899999999999987765443332222 4578999999999986
No 437
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.47 E-value=0.027 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999986
No 438
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.43 E-value=0.021 Score=48.18 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++|.||+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 439
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.43 E-value=0.023 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++|.+|+|||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
No 440
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.42 E-value=0.021 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 017187 136 LLVMVVGVPNVGKSALINSIH 156 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~ 156 (375)
..|+++|.||+||||+.+.|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999993
No 441
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.41 E-value=0.028 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..|+++|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 442
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.35 E-value=0.026 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999985
No 443
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.34 E-value=0.025 Score=47.93 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..|+++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 444
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.33 E-value=0.025 Score=47.42 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.|+++|.||+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 445
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.26 E-value=0.049 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....++++|.||+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999986
No 446
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.15 E-value=0.031 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345689999999999999998653
No 447
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.14 E-value=0.054 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 448
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.12 E-value=0.029 Score=53.04 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.++-.++|+|.+|+|||||++.|.+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34567999999999999999999973
No 449
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.06 E-value=0.029 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 344689999999999999999997
No 450
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.04 E-value=0.031 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..|+|.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 451
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.03 E-value=0.026 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999997
No 452
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.01 E-value=0.035 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.||+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 453
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.99 E-value=0.036 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+-.++|+|.+|+|||||++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4566899999999999999999987
No 454
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.99 E-value=0.033 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.776 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.|+|.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 455
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.94 E-value=0.027 Score=58.66 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=38.8
Q ss_pred EEEEEcCCCCChHHHHHHHHh-hhccccccccc-ccccccCCCC------CeeeeeEEEE-EccCCcEEEEEcCCCCCC
Q 017187 137 LVMVVGVPNVGKSALINSIHQ-IALSRFPVQEK-TKRATVGPLP------GVTQDIAGFK-IAHRPSIYVLDTPGVLVP 206 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~-~g~~~~~~~~k-~~~~~v~~~p------g~T~~~~~~~-i~~~~~~~liDTPGi~~~ 206 (375)
+|+|+|....|||||..+|+- .|.+... |+ ....++.+.- |.|....... .+.+..+.||||||-..+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~--g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITEL--GSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSC--SSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccc--cccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 689999999999999999874 3333211 00 0111122111 4444333111 123346889999998764
No 456
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.86 E-value=0.033 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999997
No 457
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.78 E-value=0.036 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.|+++|.||+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.78 E-value=0.019 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++|+|.+|+|||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 459
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.77 E-value=0.043 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.77 E-value=0.038 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999997
No 461
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.76 E-value=0.037 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q 017187 135 TLLVMVVGVPNVGKSALINSIH 156 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~ 156 (375)
+..++|+|.||+||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 462
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.76 E-value=0.036 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
-.++++|.+|+|||||++.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999997
No 463
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.75 E-value=0.04 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++++|.||+||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 464
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.71 E-value=0.043 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...+..++|+|.+|+|||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35678899999999999999999987
No 465
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.69 E-value=0.053 Score=49.32 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 466
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.64 E-value=0.037 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...|+++|.||+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999976
No 467
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.64 E-value=0.052 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 468
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.63 E-value=0.037 Score=48.41 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.++++|.+|+|||||++.|.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 488999999999999999987
No 469
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.62 E-value=0.043 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..|+++|.||+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 470
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.61 E-value=0.041 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..++++|.||+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 471
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.60 E-value=0.038 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999997
No 472
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.55 E-value=0.05 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..++++|.||+||||+.+.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999986
No 473
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.55 E-value=0.038 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhh
Q 017187 137 LVMVVGVPNVGKSALINSIHQI 158 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~~ 158 (375)
.++++|.+|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999984
No 474
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.54 E-value=0.048 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999999986
No 475
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.52 E-value=0.042 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999997
No 476
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.50 E-value=0.042 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q 017187 137 LVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 137 ~v~vvG~pnvGKSsliN~L~~ 157 (375)
.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 477
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.45 E-value=0.047 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..|++.|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 478
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.44 E-value=0.041 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999997
No 479
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.44 E-value=0.058 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+-.++++|..|+|||||++.|.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999999997
No 480
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.44 E-value=0.03 Score=49.95 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=16.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHH-h
Q 017187 134 PTLLVMVVGVPNVGKSALINSIH-Q 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~-~ 157 (375)
.+-.++++|.+|+|||||++.|. +
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999 7
No 481
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.44 E-value=0.038 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999997
No 482
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.44 E-value=0.049 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..|++.|.||+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.43 E-value=0.043 Score=50.47 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999997
No 484
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.43 E-value=0.037 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~ 157 (375)
-.++++|.+|+|||||++.|.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999997
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.43 E-value=0.041 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 486
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.42 E-value=0.037 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999999997
No 487
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.40 E-value=0.097 Score=48.36 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q 017187 138 VMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 138 v~vvG~pnvGKSsliN~L~~ 157 (375)
++++|.||+|||||+++|.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 488
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.39 E-value=0.048 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999997
No 489
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.38 E-value=0.044 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 344689999999999999999997
No 490
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.054 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+..|+++|.||+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 491
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.32 E-value=0.055 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q 017187 133 EPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 133 ~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
..+..|+++|.||+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999975
No 492
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.31 E-value=0.055 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999986
No 493
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.30 E-value=0.046 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999997
No 494
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.30 E-value=0.045 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q 017187 135 TLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 135 ~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
+-.++++|.+|+|||||++.|.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999997
No 495
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.28 E-value=0.06 Score=45.85 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..++++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999986
No 496
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.27 E-value=0.07 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
....+++.|.||+|||+++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999986
No 497
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.26 E-value=0.1 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCChHHHHHHHHh
Q 017187 132 REPTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 132 ~~~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
...++.++++|.+|+|||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35577899999999999999999986
No 498
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.22 E-value=0.055 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhhh
Q 017187 136 LLVMVVGVPNVGKSALINSIHQIA 159 (375)
Q Consensus 136 ~~v~vvG~pnvGKSsliN~L~~~g 159 (375)
..++++|.+|+||||+.+.|.+.|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHCC
Confidence 468999999999999999998643
No 499
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.20 E-value=0.057 Score=46.34 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+..|+++|.||+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 500
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.19 E-value=0.049 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHh
Q 017187 134 PTLLVMVVGVPNVGKSALINSIHQ 157 (375)
Q Consensus 134 ~~~~v~vvG~pnvGKSsliN~L~~ 157 (375)
.+-.++++|.+|+|||||++.|.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999997
Done!