BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017188
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 134/186 (72%), Gaps = 6/186 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P THMALV+LE+ G+L+F++SQNVDGLH+RSG PR+KLAELHGN F+E C C ++Y R
Sbjct: 91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62 DFEVETIGLKETSRRCSDLK------CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVV 115
D V T+GLK T R C+ K C +LRDT+LDWED+LP +++ A++ + AD+
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175
+ LGTSLQI P+ NLPL R GG++VIVNLQ T D+ A L IHG+VD+V+ +M+ L
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLG 270
Query: 176 LRIPPY 181
L IP +
Sbjct: 271 LEIPAW 276
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 133/186 (71%), Gaps = 6/186 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P THMALV+LE+ G+L+F++SQNVDGLH+RSG PR+KLAELHGN F+E C C ++Y R
Sbjct: 91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62 DFEVETIGLKETSRRCSDLK------CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVV 115
D V T+GLK T R C+ K C +LRDT+LDWED+LP +++ A++ + AD+
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175
+ LGTSLQI P+ NLPL R GG++VIVNLQ T D+ A L IHG+VD+V+ +M L
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270
Query: 176 LRIPPY 181
L IP +
Sbjct: 271 LEIPAW 276
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A ELE+ G+LK +I+QNVDGLH R+G + LHG+ + C SC +
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDGLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 129
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + LPP ++ A + + ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVVAGVMDLLNLR 177
+ PA +LPL + GG I+ +N +TP A + G +D++V V L+L+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLK 247
Query: 178 I 178
+
Sbjct: 248 L 248
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A ELE+ G+LK +I+QNVD LH R+G + LHG+ + C SC +
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 129
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + + LPP ++ A + + ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVVAGVMDLLNLR 177
+ PA +LPL + GG I+ +N +TP A + G +D++V V L+L+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLK 247
Query: 178 I 178
+
Sbjct: 248 L 248
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A ELE+ G+LK +I+QNVD LH R+G + LHG+ + C SC +
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 129
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + + LPP ++ A + + ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVVAGVMDLLNLR 177
+ PA +LPL + GG I+ +N +TP A + G +D++V V L+L+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLK 247
Query: 178 I 178
+
Sbjct: 248 L 248
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 11/159 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ ELHGN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKY-- 131
Query: 62 DFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCL 118
VE + K S C D C + +R ++ + + LP + A A +++ L
Sbjct: 132 --TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVL 187
Query: 119 GTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 157
G+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 188 GSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A ELE+ G+LK +I+QNVD LH R+G + LHG+ + C SC +
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 129
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + LPP ++ A + + ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVVAGVMDLLNLR 177
+ PA +LPL + GG I+ +N +TP A + G +D++V V L+L+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLK 247
Query: 178 I 178
+
Sbjct: 248 L 248
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A ELE+ G+LK +I+QNVD LH R+G + LHG+ + C SC +
Sbjct: 87 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 140
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + + LPP ++ A + + ADV++ GTS
Sbjct: 141 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 198
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 167
+ PA +LPL + GG I+ +N +TP A + G +V+
Sbjct: 199 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P + A ELE+ G+LK +I+QNVD LH R+G + LHG+ + C SC +
Sbjct: 76 PNKANQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNN---- 129
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
FEVE+ +C KCG+ LR V+ + + LPP ++ A + + ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVDKVVAGVMDLLNLR 177
+ PA +LPL + GG I+ +N +TP A + G +D++V V L+L+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALSLK 247
Query: 178 I 178
+
Sbjct: 248 L 248
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 11/159 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL+GN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNVEEYYCVRCEKKY-- 131
Query: 62 DFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCL 118
VE + K S C D C + +R ++ + + LP + A A +++ L
Sbjct: 132 --TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVL 187
Query: 119 GTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 157
G+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 188 GSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL GN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNVEEYYCVRCEKKY-- 131
Query: 62 DFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCL 118
VE + K S C D C + +R ++ + + LP + A A +++ L
Sbjct: 132 --TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVL 187
Query: 119 GTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 157
G+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 188 GSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H A+ ELE+ GI+K VI+QN+D LH R+G R + ELHG+ C C Y
Sbjct: 78 PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHGSMDKLDCLDCHETYDW 135
Query: 62 DFEVETIGLKETSRRCSDLKCGA-KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGT 120
VE E RC KCG+ ++ V+ + + LP + + A + K D + +G+
Sbjct: 136 SEFVEDFNKGEIP-RCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGS 192
Query: 121 SLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMD 172
SL + PA LP + G K++IVN + T D + I G +V+ +++
Sbjct: 193 SLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 6 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEV 65
H+AL LE G LK V++QNVDGLH SG K+ LHGN F C +C + ++
Sbjct: 88 HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 141
Query: 66 ETIGLKETSRRCSDL----KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
I L++TS L CG + ++ + + + + AE+ D++L +GTS
Sbjct: 142 NKIXLQKTSHFXHQLPPECPCGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 201
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 156
++ A NL + KIV +N+ KT K S
Sbjct: 202 STVSTATNLCHFACKKKKKIVEINISKTYITNKXS 236
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 6 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEV 65
H+AL LE G LK V++QNVDGLH SG K+ LHGN F C +C + ++
Sbjct: 113 HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 166
Query: 66 ETIGLKETSRRCSDL----KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
I L++TS L CG + ++ + + + + AE+ D++L +GTS
Sbjct: 167 NKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 226
Query: 122 LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 156
++ A NL + KIV +N+ KT K S
Sbjct: 227 STVSTATNLCHFACKKKKKIVEINISKTYITNKMS 261
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 2 PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCG- 56
P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F C SCG
Sbjct: 83 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 57 -SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLDWEDALPPKE 101
+E ++ + K E RC + CG LR V+ + + L P
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161
+ ++ D+ L +GTS + PA + G + N + TP + G
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 2 PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCG- 56
P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F C SCG
Sbjct: 87 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 144
Query: 57 -SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLDWEDALPPKE 101
+E ++ + K E RC + CG LR V+ + + L P
Sbjct: 145 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 204
Query: 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161
+ ++ D+ L +GTS + PA + G + N + TP + G
Sbjct: 205 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 264
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 2 PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCG- 56
P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F C SCG
Sbjct: 85 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 142
Query: 57 -SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLDWEDALPPKE 101
+E ++ + K E RC + CG LR V+ + + L P
Sbjct: 143 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 202
Query: 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161
+ ++ D+ L +GTS + PA + G + N + TP + G
Sbjct: 203 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 262
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 2 PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCG- 56
P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F C SCG
Sbjct: 79 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 136
Query: 57 -SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLDWEDALPPKE 101
+E ++ + K E RC + CG LR V+ + + L P
Sbjct: 137 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 196
Query: 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161
+ ++ D+ L +GTS + PA + G + N + TP + G
Sbjct: 197 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 256
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 2 PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCG- 56
P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F C SCG
Sbjct: 83 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 57 -SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLDWEDALPPKE 101
+E ++ + K E RC + CG LR V+ + + L P
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161
+ ++ D+ L +GTS + PA + G + N + TP + G
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEAC--PSCGSEY 59
P + H + L+ G+L +QN+D L +G+ +E L E HG + C SC EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60 FRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLG 119
+ E I E + +C D C + ++ ++ + ++LP + + + D++L +G
Sbjct: 172 PLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
TSLQ+ P +L
Sbjct: 229 TSLQVQPFASL 239
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEAC--PSCGSEY 59
P + H + L+ G+L +QN+D L +G+ +E L E HG + C SC EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60 FRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLG 119
+ E I E + +C D C + ++ ++ + ++LP + + + D++L +G
Sbjct: 172 PLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
TSLQ+ P +L
Sbjct: 229 TSLQVQPFASL 239
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P +TH L L G+L + +QN+DGL SGIP KL E HG C C F
Sbjct: 85 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC-QRPFP 143
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
++ + + RC C ++ ++ + + LP + + +AD++L LGTS
Sbjct: 144 GEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHVVDF-PMADLLLILGTS 200
Query: 122 LQITPACNL 130
L++ P +L
Sbjct: 201 LEVEPFASL 209
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P +TH L L G+L + +QN+DGL SGIP KL E HG C C F
Sbjct: 92 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC-QRPFP 150
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
++ + + RC C ++ ++ + + LP + + +AD++L LGTS
Sbjct: 151 GEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHVVDF-PMADLLLILGTS 207
Query: 122 LQITPACNL 130
L++ P +L
Sbjct: 208 LEVEPFASL 216
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P +TH L L G+L + +QN+DGL SGIP KL E HG C C F
Sbjct: 91 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC-QRPFP 149
Query: 62 DFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 121
++ + + RC C ++ ++ + + LP + + +AD++L LGTS
Sbjct: 150 GEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHVVDF-PMADLLLILGTS 206
Query: 122 LQITPACNL 130
L++ P +L
Sbjct: 207 LEVEPFASL 215
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 2 PGMTHMALVELEKA-GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYF 60
P H+AL +L+ A G +++QN+D LH R+G + +HG C G
Sbjct: 67 PNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQV-- 122
Query: 61 RDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGT 120
++ G +C + A LR V+ W +P M+ +AD+ + +GT
Sbjct: 123 ----LDWTGDVTPEDKCHCCQFPAPLRPHVV-WFGEMP-LGMDEIYMALSMADIFIAIGT 176
Query: 121 SLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK--------ASLVIHGFVDKVVAGV 170
S + PA + G V +NL+ + + AS V+ FV+K++ G+
Sbjct: 177 SGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL 234
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN+D L ++G+ + + E HG+ C CG Y
Sbjct: 89 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 146
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 147 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 204
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 205 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 261
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 262 VHQYSDEFAEQLVEELGWQ 280
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN+D L ++G+ + + E HG+ C CG Y
Sbjct: 96 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 153
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 154 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 211
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 212 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 268
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 269 VHQYSDEFAEQLVEELGWQ 287
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN+D L ++G+ + + E HG+ C CG Y
Sbjct: 99 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 156
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 157 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 214
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 215 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 271
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 272 VHQYSDEFAEQLVEELGWQ 290
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN+D L ++G+ + + E HG+ C CG Y
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 164
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 165 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 222
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 223 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 279
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 280 VHQYSDEFAEQLVEELGWQ 298
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 36/207 (17%)
Query: 6 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEA-------------- 51
H + L+ G L +QN+D L +GI +KL + HG SF A
Sbjct: 118 HSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHG-SFATATCVTCHWNLPGERI 176
Query: 52 -----------CPSCGS---EYFRDFEVETIGLKETSRRCSD-----LKCGAKLRDTVLD 92
CP C EYF + +G+ + S+ L L+ +
Sbjct: 177 FNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSXSERPPYILNSYGVLKPDITF 236
Query: 93 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 152
+ +ALP K + D+++C+GTSL++ P + + + V++N K
Sbjct: 237 FGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI-VNXVPSHVPQVLINRDPV-KH 294
Query: 153 KKASLVIHGFVDKVVAGVMDLLNLRIP 179
+ L + G+ D + A V IP
Sbjct: 295 AEFDLSLLGYCDDIAAXVAQKCGWTIP 321
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN+D L ++G+ + + E HG+ C CG Y
Sbjct: 97 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 154
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 155 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 212
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 213 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 269
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 270 VHQYSDEFAEQLVEELGWQ 288
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P H L + +LK V +QN D L ++G+ + + E HG+ C CG Y
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY-- 164
Query: 62 DFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE------- 106
+ K D CG ++ ++ D D+ +N +E
Sbjct: 165 --PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKIT 222
Query: 107 ---KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LV 158
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+ L+
Sbjct: 223 TSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLI 279
Query: 159 IHGFVDKVVAGVMDLLNLR 177
+H + D+ +++ L +
Sbjct: 280 VHQYSDEFAEQLVEELGWQ 298
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 36/207 (17%)
Query: 6 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEA-------------- 51
H + L+ G L +QN+D L +GI +KL + HG SF A
Sbjct: 256 HSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHG-SFATATCVTCHWNLPGERI 314
Query: 52 -----------CPSCGS---EYFRDFEVETIGLKETSRRCSD-----LKCGAKLRDTVLD 92
CP C EYF + +G+ + S+ L L+ +
Sbjct: 315 FNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITF 374
Query: 93 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 152
+ +ALP K + D+++C+GTSL++ P + + + V++N K
Sbjct: 375 FGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI-VNMVPSHVPQVLINRDPV-KH 432
Query: 153 KKASLVIHGFVDKVVAGVMDLLNLRIP 179
+ L + G+ D + A V IP
Sbjct: 433 AEFDLSLLGYCDDIAAMVAQKCGWTIP 459
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 2 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR 61
P + H + +K G L +QN+D L +GI +++ + HG+ +C C +Y
Sbjct: 86 PSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGI--QRIIQCHGSFATASCLIC--KYKV 141
Query: 62 DFE-VETIGLKETSRRCSDLKCGAK-----LRDTVLDWEDALPPKEMNPAEKHCKI-ADV 114
D E V + RC +C A ++ ++ + + L P++ + A K+ K D+
Sbjct: 142 DCEAVRGDIFNQVVPRCP--RCPADEPLAIMKPEIVFFGENL-PEQFHRAMKYDKDEVDL 198
Query: 115 VLCLGTSLQITPACNLP 131
++ +G+SL++ P +P
Sbjct: 199 LIVIGSSLKVRPVALIP 215
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 152 DKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKK------FVNWT 205
D + + I + ++ +M+L N PY D+L+ + LSSD K + W
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM----LSSDPKNHHVWSYRKWL 153
Query: 206 LRITSVHGQTAQLPFIKSV 224
+ +H +L F+ V
Sbjct: 154 VDTFDLHNDAKELSFVDKV 172
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ 123
K G L + +L EDAL P+ NP E + CLG SL+
Sbjct: 294 KLGISLEEMLLVTEDALHPEPYNPEE-------ICRCLGISLE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,460,958
Number of Sequences: 62578
Number of extensions: 407477
Number of successful extensions: 868
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 40
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)