Query 017188
Match_columns 375
No_of_seqs 251 out of 1220
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 100.0 2.8E-48 6E-53 372.7 9.9 244 1-254 100-350 (353)
2 PRK14138 NAD-dependent deacety 100.0 9.6E-46 2.1E-50 351.9 17.3 171 1-176 73-243 (244)
3 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 9.4E-46 2E-50 344.0 15.8 160 1-162 47-206 (206)
4 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 1.2E-45 2.7E-50 349.3 15.7 166 1-170 68-235 (235)
5 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 2.2E-45 4.8E-50 352.5 15.0 163 1-167 72-260 (260)
6 PTZ00409 Sir2 (Silent Informat 100.0 7.8E-44 1.7E-48 343.8 17.0 168 1-174 91-262 (271)
7 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 3.2E-43 7E-48 330.0 15.5 156 1-162 67-222 (222)
8 PRK05333 NAD-dependent deacety 100.0 9E-43 2E-47 338.0 17.7 172 1-176 82-279 (285)
9 PRK00481 NAD-dependent deacety 100.0 1.5E-42 3.2E-47 328.7 17.0 165 1-174 76-240 (242)
10 COG0846 SIR2 NAD-dependent pro 100.0 5.2E-43 1.1E-47 334.4 13.4 170 1-175 76-246 (250)
11 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 3.7E-42 8.1E-47 321.9 15.8 162 1-171 63-224 (224)
12 PTZ00408 NAD-dependent deacety 100.0 8.4E-42 1.8E-46 324.9 16.3 162 1-174 69-235 (242)
13 cd01407 SIR2-fam SIR2 family o 100.0 1.1E-41 2.3E-46 318.1 15.8 156 1-162 63-218 (218)
14 PTZ00410 NAD-dependent SIR2; P 100.0 3.3E-41 7.2E-46 334.6 16.0 145 1-150 99-243 (349)
15 cd01411 SIR2H SIR2H: Uncharact 100.0 9E-41 1.9E-45 314.2 12.9 152 1-166 73-224 (225)
16 cd00296 SIR2 SIR2 superfamily 100.0 2E-37 4.3E-42 287.3 15.3 156 1-162 65-222 (222)
17 PF02146 SIR2: Sir2 family; I 100.0 1.2E-37 2.5E-42 281.9 8.4 120 1-126 59-178 (178)
18 KOG2683 Sirtuin 4 and related 100.0 9.8E-37 2.1E-41 285.8 10.2 166 1-170 111-305 (305)
19 KOG2682 NAD-dependent histone 100.0 7.4E-37 1.6E-41 286.8 6.0 173 1-177 104-281 (314)
20 KOG2684 Sirtuin 5 and related 100.0 5.2E-34 1.1E-38 284.3 12.1 179 1-184 155-351 (412)
21 PF00205 TPP_enzyme_M: Thiamin 96.3 0.013 2.9E-07 50.4 7.2 67 103-170 69-137 (137)
22 PF03366 YEATS: YEATS family; 96.3 0.019 4.2E-07 46.8 7.5 79 203-284 3-81 (84)
23 cd01406 SIR2-like Sir2-like: P 96.2 0.0059 1.3E-07 57.7 4.6 33 1-33 79-112 (242)
24 PRK08322 acetolactate synthase 94.1 0.12 2.7E-06 54.4 7.0 68 105-175 256-325 (547)
25 PRK07524 hypothetical protein; 94.0 0.092 2E-06 55.3 5.9 73 103-176 255-330 (535)
26 PRK07418 acetolactate synthase 93.9 0.13 2.7E-06 55.5 6.8 70 104-175 283-354 (616)
27 PRK07979 acetolactate synthase 93.8 0.14 3E-06 54.6 6.8 70 104-175 265-336 (574)
28 PRK08979 acetolactate synthase 93.8 0.14 3E-06 54.6 6.8 71 103-175 264-336 (572)
29 PRK06882 acetolactate synthase 93.6 0.17 3.6E-06 53.9 6.9 70 104-175 265-336 (574)
30 TIGR01504 glyox_carbo_lig glyo 93.4 0.17 3.8E-06 54.2 6.8 69 104-174 262-332 (588)
31 PRK07789 acetolactate synthase 93.4 0.16 3.4E-06 54.7 6.4 70 104-175 290-361 (612)
32 CHL00099 ilvB acetohydroxyacid 93.4 0.29 6.3E-06 52.4 8.3 69 105-175 277-347 (585)
33 PRK09107 acetolactate synthase 93.3 0.19 4.2E-06 53.9 6.9 70 104-175 273-344 (595)
34 PRK06456 acetolactate synthase 93.2 0.2 4.2E-06 53.3 6.7 70 105-175 267-338 (572)
35 PRK08527 acetolactate synthase 93.2 0.21 4.5E-06 53.1 6.9 69 105-175 263-333 (563)
36 PRK06154 hypothetical protein; 93.1 0.21 4.5E-06 53.4 6.8 69 104-176 273-343 (565)
37 TIGR02418 acolac_catab acetola 93.1 0.24 5.2E-06 52.3 7.2 69 104-175 255-325 (539)
38 PRK06466 acetolactate synthase 93.1 0.21 4.5E-06 53.2 6.8 70 104-175 265-336 (574)
39 PRK06725 acetolactate synthase 93.1 0.21 4.6E-06 53.3 6.8 70 104-175 273-344 (570)
40 PRK08327 acetolactate synthase 93.0 0.26 5.6E-06 52.6 7.3 67 105-175 273-344 (569)
41 PLN02470 acetolactate synthase 92.9 0.26 5.6E-06 52.7 7.1 70 104-175 272-343 (585)
42 PRK05858 hypothetical protein; 92.6 0.37 8.1E-06 51.0 7.7 68 104-175 255-324 (542)
43 PRK08199 thiamine pyrophosphat 92.5 0.26 5.6E-06 52.3 6.5 78 104-181 263-343 (557)
44 TIGR03254 oxalate_oxc oxalyl-C 92.5 0.35 7.5E-06 51.3 7.4 69 106-175 260-330 (554)
45 PRK08266 hypothetical protein; 92.3 0.22 4.7E-06 52.6 5.6 69 104-175 256-325 (542)
46 PRK08978 acetolactate synthase 92.3 0.29 6.3E-06 51.8 6.5 69 104-174 255-325 (548)
47 PRK11269 glyoxylate carboligas 92.3 0.33 7.2E-06 52.0 7.0 69 105-175 264-334 (591)
48 PRK08611 pyruvate oxidase; Pro 92.1 0.33 7.2E-06 51.8 6.8 65 104-175 260-326 (576)
49 PRK06965 acetolactate synthase 92.1 0.32 6.9E-06 52.1 6.6 71 104-175 280-352 (587)
50 PRK08155 acetolactate synthase 92.1 0.36 7.8E-06 51.3 6.9 69 105-175 271-341 (564)
51 PRK07282 acetolactate synthase 92.1 0.33 7.3E-06 51.7 6.7 70 104-175 269-340 (566)
52 TIGR00118 acolac_lg acetolacta 92.1 0.33 7.1E-06 51.5 6.6 70 104-175 260-331 (558)
53 PRK06112 acetolactate synthase 92.1 0.37 8E-06 51.4 7.0 70 104-175 277-347 (578)
54 COG0028 IlvB Thiamine pyrophos 92.1 0.31 6.7E-06 52.3 6.4 70 104-176 259-330 (550)
55 PRK07525 sulfoacetaldehyde ace 92.0 0.3 6.6E-06 52.2 6.2 72 104-175 259-333 (588)
56 PRK06048 acetolactate synthase 91.9 0.38 8.2E-06 51.2 6.8 71 104-176 266-338 (561)
57 PRK09259 putative oxalyl-CoA d 91.9 0.43 9.3E-06 50.8 7.2 68 107-175 268-337 (569)
58 PRK06276 acetolactate synthase 91.8 0.43 9.3E-06 51.1 7.2 70 104-175 262-333 (586)
59 PRK08273 thiamine pyrophosphat 91.7 0.39 8.4E-06 51.6 6.7 68 104-176 265-334 (597)
60 PF13289 SIR2_2: SIR2-like dom 91.7 0.21 4.5E-06 42.4 3.8 60 104-177 78-141 (143)
61 PRK08617 acetolactate synthase 91.5 0.44 9.6E-06 50.4 6.7 68 105-175 262-331 (552)
62 TIGR03457 sulphoacet_xsc sulfo 91.4 0.49 1.1E-05 50.5 7.1 70 104-175 255-329 (579)
63 PRK06546 pyruvate dehydrogenas 91.4 0.43 9.2E-06 51.1 6.6 64 104-175 258-323 (578)
64 TIGR00173 menD 2-succinyl-5-en 90.5 0.49 1.1E-05 48.7 5.9 66 106-175 270-337 (432)
65 PRK07064 hypothetical protein; 90.5 0.53 1.2E-05 49.6 6.2 69 104-175 257-327 (544)
66 TIGR02720 pyruv_oxi_spxB pyruv 90.3 0.59 1.3E-05 50.0 6.4 69 104-176 257-327 (575)
67 PLN00022 electron transfer fla 89.7 0.56 1.2E-05 47.9 5.4 59 112-175 294-353 (356)
68 PRK03363 fixB putative electro 89.5 0.62 1.4E-05 46.7 5.5 59 112-175 253-312 (313)
69 PRK09124 pyruvate dehydrogenas 89.5 0.75 1.6E-05 49.0 6.5 64 105-175 259-324 (574)
70 PRK11916 electron transfer fla 89.3 0.65 1.4E-05 46.6 5.4 59 112-175 252-311 (312)
71 COG2025 FixB Electron transfer 89.0 0.81 1.7E-05 46.0 5.8 59 112-175 252-311 (313)
72 PRK07710 acetolactate synthase 87.3 1.1 2.4E-05 47.7 6.0 70 104-175 274-345 (571)
73 PLN02573 pyruvate decarboxylas 86.6 1.2 2.5E-05 47.9 5.7 69 104-175 284-352 (578)
74 KOG1185 Thiamine pyrophosphate 86.4 1 2.3E-05 47.8 5.0 70 107-177 272-344 (571)
75 PRK07092 benzoylformate decarb 86.3 1.3 2.7E-05 46.8 5.7 72 103-175 264-336 (530)
76 PRK06457 pyruvate dehydrogenas 84.9 2 4.3E-05 45.6 6.4 59 104-169 252-312 (549)
77 TIGR03393 indolpyr_decarb indo 84.8 0.8 1.7E-05 48.5 3.4 69 104-175 265-335 (539)
78 cd02750 MopB_Nitrate-R-NarG-li 83.9 2.3 4.9E-05 44.2 6.2 55 106-160 165-221 (461)
79 COG3962 Acetolactate synthase 83.6 2.6 5.6E-05 44.8 6.3 74 105-179 289-363 (617)
80 cd02766 MopB_3 The MopB_3 CD i 82.8 1.4 3.1E-05 46.3 4.2 55 106-160 152-208 (501)
81 cd02759 MopB_Acetylene-hydrata 82.3 2.1 4.7E-05 44.4 5.3 54 107-160 156-212 (477)
82 cd02765 MopB_4 The MopB_4 CD i 81.7 1.8 3.9E-05 46.3 4.5 55 106-160 154-210 (567)
83 smart00834 CxxC_CXXC_SSSS Puta 80.2 0.94 2E-05 31.1 1.2 34 48-87 4-37 (41)
84 cd02753 MopB_Formate-Dh-H Form 78.9 3.6 7.8E-05 43.0 5.6 54 107-160 152-207 (512)
85 PRK07449 2-succinyl-5-enolpyru 78.8 3.2 7E-05 44.1 5.3 62 105-169 280-343 (568)
86 cd02768 MopB_NADH-Q-OR-NuoG2 M 77.6 5.2 0.00011 39.9 6.1 65 106-172 143-211 (386)
87 cd02767 MopB_ydeP The MopB_yde 77.5 4.2 9.1E-05 43.9 5.7 44 106-149 158-203 (574)
88 COG3383 Uncharacterized anaero 76.6 1.9 4.2E-05 48.0 2.9 68 106-173 415-488 (978)
89 cd02755 MopB_Thiosulfate-R-lik 76.3 4.2 9E-05 42.1 5.2 53 108-160 153-208 (454)
90 TIGR03479 DMSO_red_II_alp DMSO 76.0 2.6 5.6E-05 47.9 3.8 55 106-160 219-275 (912)
91 cd02763 MopB_2 The MopB_2 CD i 75.5 5.2 0.00011 44.2 5.8 54 107-160 151-206 (679)
92 cd02754 MopB_Nitrate-R-NapA-li 75.3 4.4 9.6E-05 42.9 5.1 54 107-160 153-210 (565)
93 TIGR01591 Fdh-alpha formate de 75.2 4 8.7E-05 44.1 4.9 54 107-160 151-206 (671)
94 PF09723 Zn-ribbon_8: Zinc rib 75.0 1.6 3.4E-05 31.0 1.1 32 47-84 3-34 (42)
95 PRK09444 pntB pyridine nucleot 72.9 8.6 0.00019 40.7 6.3 87 87-173 354-461 (462)
96 cd02762 MopB_1 The MopB_1 CD i 72.8 5.9 0.00013 41.9 5.3 54 107-160 152-213 (539)
97 cd02770 MopB_DmsA-EC This CD ( 72.4 4.6 9.9E-05 43.6 4.5 54 107-160 162-221 (617)
98 TIGR00509 bisC_fam molybdopter 72.1 4.3 9.3E-05 45.0 4.2 52 109-160 165-227 (770)
99 PF02233 PNTB: NAD(P) transhyd 71.1 4.5 9.7E-05 42.8 3.8 88 87-174 355-463 (463)
100 cd00368 Molybdopterin-Binding 70.9 4.2 9.1E-05 40.0 3.5 54 107-160 152-207 (374)
101 cd02760 MopB_Phenylacetyl-CoA- 70.5 8.1 0.00018 43.2 5.9 56 106-161 168-226 (760)
102 PRK15488 thiosulfate reductase 68.7 8.1 0.00018 42.7 5.5 53 108-160 193-249 (759)
103 cd02757 MopB_Arsenate-R This C 68.5 7.8 0.00017 41.1 5.1 53 108-160 159-215 (523)
104 cd02752 MopB_Formate-Dh-Na-lik 67.7 6.5 0.00014 43.3 4.4 54 107-160 165-221 (649)
105 cd05014 SIS_Kpsf KpsF-like pro 67.6 6.7 0.00015 32.7 3.6 57 108-164 44-101 (128)
106 TIGR01553 formate-DH-alph form 67.5 7.3 0.00016 45.0 4.9 54 107-160 217-272 (1009)
107 TIGR01701 Fdhalpha-like oxidor 67.3 10 0.00022 42.3 5.8 44 107-150 194-239 (743)
108 TIGR03394 indol_phenyl_DC indo 67.3 6.1 0.00013 42.0 4.0 68 104-174 261-330 (535)
109 PF07295 DUF1451: Protein of u 66.1 4 8.6E-05 36.8 2.0 29 48-85 111-139 (146)
110 TIGR02098 MJ0042_CXXC MJ0042 f 65.2 3.8 8.2E-05 27.9 1.3 34 49-86 2-35 (38)
111 TIGR02605 CxxC_CxxC_SSSS putat 65.1 3.4 7.5E-05 29.9 1.2 31 48-84 4-34 (52)
112 COG1029 FwdB Formylmethanofura 64.9 13 0.00028 38.5 5.5 74 87-164 306-385 (429)
113 PRK09939 putative oxidoreducta 64.8 8 0.00017 43.3 4.5 43 107-149 204-248 (759)
114 PF00384 Molybdopterin: Molybd 64.6 4.3 9.2E-05 40.8 2.1 56 105-160 105-163 (432)
115 PRK07860 NADH dehydrogenase su 64.5 7.8 0.00017 43.4 4.3 55 106-160 371-429 (797)
116 PRK00398 rpoP DNA-directed RNA 62.5 4.8 0.0001 28.8 1.5 29 48-85 2-30 (46)
117 cd02751 MopB_DMSOR-like The Mo 61.5 18 0.0004 38.9 6.3 53 108-160 165-229 (609)
118 cd02761 MopB_FmdB-FwdB The Mop 61.2 19 0.00041 36.2 6.1 53 108-160 127-190 (415)
119 cd02758 MopB_Tetrathionate-Ra 60.9 11 0.00023 42.1 4.5 53 107-160 207-269 (735)
120 TIGR01973 NuoG NADH-quinone ox 60.9 10 0.00022 40.9 4.3 54 107-160 358-414 (603)
121 PRK11032 hypothetical protein; 60.8 5.7 0.00012 36.4 2.0 29 48-85 123-151 (160)
122 cd02769 MopB_DMSOR-BSOR-TMAOR 60.4 14 0.0003 39.9 5.2 52 108-159 167-230 (609)
123 KOG3954 Electron transfer flav 60.2 10 0.00022 37.7 3.7 58 113-175 276-334 (336)
124 COG3091 SprT Zn-dependent meta 59.7 1.5 3.4E-05 39.8 -1.8 79 4-87 69-151 (156)
125 TIGR01580 narG respiratory nit 59.2 13 0.00029 43.7 5.0 53 108-160 242-296 (1235)
126 PRK06260 threonine synthase; V 57.9 6.2 0.00013 40.4 1.9 30 47-87 1-30 (397)
127 PRK06266 transcription initiat 57.7 6.9 0.00015 36.2 2.0 36 45-88 113-148 (178)
128 cd02772 MopB_NDH-1_NuoG2 MopB_ 57.4 16 0.00035 36.9 4.9 45 106-150 147-193 (414)
129 cd02773 MopB_Res-Cmplx1_Nad11 57.4 19 0.00042 36.1 5.4 52 106-157 140-194 (375)
130 cd05710 SIS_1 A subgroup of th 57.1 11 0.00025 31.7 3.1 57 108-164 44-101 (120)
131 TIGR00373 conserved hypothetic 56.6 6.9 0.00015 35.4 1.8 36 43-86 103-138 (158)
132 PRK00945 acetyl-CoA decarbonyl 56.5 21 0.00046 32.9 5.0 60 110-173 107-167 (171)
133 TIGR02166 dmsA_ynfE anaerobic 56.2 15 0.00033 40.7 4.8 54 107-160 210-270 (797)
134 PRK14990 anaerobic dimethyl su 55.0 16 0.00035 40.8 4.7 55 106-160 226-287 (814)
135 COG1282 PntB NAD/NADP transhyd 54.6 16 0.00035 37.9 4.2 87 87-174 356-463 (463)
136 TIGR00595 priA primosomal prot 53.9 32 0.00068 36.7 6.5 21 102-122 301-321 (505)
137 PRK13532 nitrate reductase cat 53.8 17 0.00036 40.9 4.6 54 107-160 202-259 (830)
138 smart00531 TFIIE Transcription 53.3 7.4 0.00016 34.5 1.4 37 49-88 99-135 (147)
139 PRK12496 hypothetical protein; 52.7 6.5 0.00014 35.8 1.0 28 49-87 127-154 (164)
140 KOG3149 Transcription initiati 52.4 45 0.00099 32.5 6.8 76 201-279 36-111 (249)
141 cd02764 MopB_PHLH The MopB_PHL 52.2 24 0.00053 37.2 5.3 53 108-160 193-255 (524)
142 PF05191 ADK_lid: Adenylate ki 50.9 8.5 0.00018 26.6 1.1 30 50-86 2-31 (36)
143 COG0243 BisC Anaerobic dehydro 49.5 14 0.0003 40.9 3.1 53 107-159 195-252 (765)
144 cd05008 SIS_GlmS_GlmD_1 SIS (S 48.5 19 0.00041 29.9 3.1 55 109-163 44-99 (126)
145 PRK13937 phosphoheptose isomer 48.4 22 0.00047 32.6 3.7 56 108-163 103-159 (188)
146 TIGR03127 RuMP_HxlB 6-phospho 48.3 16 0.00034 32.7 2.8 57 108-164 69-126 (179)
147 PF13717 zinc_ribbon_4: zinc-r 48.0 12 0.00026 25.7 1.5 33 49-85 2-34 (36)
148 PF09538 FYDLN_acid: Protein o 47.9 13 0.00027 31.9 2.0 31 49-89 9-39 (108)
149 cd05006 SIS_GmhA Phosphoheptos 47.2 27 0.00059 31.2 4.1 55 108-162 98-153 (177)
150 cd05005 SIS_PHI Hexulose-6-pho 46.5 19 0.00041 32.3 3.0 58 108-165 72-130 (179)
151 PF09845 DUF2072: Zn-ribbon co 45.9 9.2 0.0002 34.0 0.8 26 51-85 3-28 (131)
152 cd05013 SIS_RpiR RpiR-like pro 45.6 24 0.00053 29.0 3.3 57 108-164 57-114 (139)
153 TIGR02026 BchE magnesium-proto 45.3 79 0.0017 33.4 7.8 87 89-175 39-136 (497)
154 TIGR00441 gmhA phosphoheptose 44.8 45 0.00097 29.4 5.1 52 109-160 77-129 (154)
155 TIGR03129 one_C_dehyd_B formyl 43.4 37 0.00081 34.0 4.9 53 108-160 133-196 (421)
156 TIGR01706 NAPA periplasmic nit 43.4 26 0.00055 39.5 4.0 53 107-160 202-259 (830)
157 PLN02980 2-oxoglutarate decarb 43.3 38 0.00083 41.3 5.7 62 108-172 595-659 (1655)
158 PF13240 zinc_ribbon_2: zinc-r 42.6 15 0.00034 22.9 1.2 23 51-86 1-23 (23)
159 PRK13938 phosphoheptose isomer 42.2 29 0.00063 32.4 3.6 56 108-163 110-166 (196)
160 TIGR02300 FYDLN_acid conserved 42.1 19 0.0004 32.0 2.1 31 49-89 9-39 (129)
161 PRK04940 hypothetical protein; 42.0 16 0.00035 34.0 1.9 62 87-151 26-95 (180)
162 PRK07591 threonine synthase; V 42.0 15 0.00032 38.1 1.8 29 47-87 16-44 (421)
163 PF13719 zinc_ribbon_5: zinc-r 41.1 17 0.00036 25.1 1.3 33 49-85 2-34 (37)
164 COG3364 Zn-ribbon containing p 41.1 15 0.00033 31.5 1.3 27 50-85 3-29 (112)
165 PRK07586 hypothetical protein; 40.9 87 0.0019 32.9 7.3 20 103-122 254-273 (514)
166 PRK12474 hypothetical protein; 40.9 90 0.002 32.9 7.4 59 104-175 259-320 (518)
167 cd02068 radical_SAM_B12_BD B12 40.8 55 0.0012 27.6 4.8 66 110-175 38-111 (127)
168 PF13248 zf-ribbon_3: zinc-rib 40.6 17 0.00036 23.1 1.2 25 49-86 2-26 (26)
169 COG1737 RpiR Transcriptional r 40.5 29 0.00062 33.9 3.4 58 106-163 172-230 (281)
170 PRK15482 transcriptional regul 40.4 29 0.00063 33.5 3.4 59 107-165 178-237 (285)
171 COG3961 Pyruvate decarboxylase 40.2 52 0.0011 35.6 5.4 78 92-174 249-335 (557)
172 COG1996 RPC10 DNA-directed RNA 40.0 11 0.00024 28.1 0.3 28 49-85 6-33 (49)
173 PRK11557 putative DNA-binding 39.5 32 0.00069 32.9 3.5 58 105-162 169-227 (278)
174 TIGR03471 HpnJ hopanoid biosyn 39.3 96 0.0021 32.4 7.3 70 103-172 60-138 (472)
175 PRK08493 NADH dehydrogenase su 39.2 55 0.0012 37.2 5.8 69 106-174 365-442 (819)
176 COG5033 TFG3 Transcription ini 38.9 72 0.0016 30.8 5.6 70 204-275 35-106 (225)
177 PRK09129 NADH dehydrogenase su 38.9 52 0.0011 36.7 5.5 46 106-151 365-412 (776)
178 PF04016 DUF364: Domain of unk 38.7 33 0.00072 30.5 3.3 70 102-172 53-130 (147)
179 TIGR03844 cysteate_syn cysteat 38.6 18 0.0004 37.3 1.8 27 49-87 2-28 (398)
180 cd00350 rubredoxin_like Rubred 38.2 24 0.00051 23.6 1.7 24 50-84 2-25 (33)
181 TIGR00300 conserved hypothetic 37.5 33 0.00071 35.8 3.4 77 95-175 317-405 (407)
182 PRK00414 gmhA phosphoheptose i 37.2 53 0.0011 30.3 4.5 55 109-163 109-164 (192)
183 COG1379 PHP family phosphoeste 36.5 9.6 0.00021 38.9 -0.6 42 42-91 239-280 (403)
184 cd07153 Fur_like Ferric uptake 36.2 63 0.0014 26.6 4.4 48 3-61 36-85 (116)
185 PRK05580 primosome assembly pr 36.2 62 0.0013 35.8 5.5 21 102-122 469-489 (679)
186 TIGR00354 polC DNA polymerase, 35.8 20 0.00044 41.2 1.7 56 42-111 1000-1060(1095)
187 TIGR00315 cdhB CO dehydrogenas 35.4 67 0.0015 29.4 4.7 63 105-173 91-159 (162)
188 PF01475 FUR: Ferric uptake re 34.8 39 0.00084 28.3 2.9 48 4-62 44-93 (120)
189 PF02591 DUF164: Putative zinc 34.6 38 0.00082 25.1 2.5 41 39-86 16-56 (56)
190 PRK06450 threonine synthase; V 33.7 25 0.00053 35.5 1.8 26 50-87 4-29 (338)
191 PRK00564 hypA hydrogenase nick 33.1 25 0.00055 30.2 1.6 36 40-85 62-97 (117)
192 PF01380 SIS: SIS domain SIS d 33.0 20 0.00043 29.6 0.8 57 108-164 50-107 (131)
193 PRK04023 DNA polymerase II lar 32.7 24 0.00053 40.8 1.7 56 42-111 1025-1085(1121)
194 PRK11337 DNA-binding transcrip 31.7 58 0.0013 31.4 4.0 56 107-162 183-239 (292)
195 cd03805 GT1_ALG2_like This fam 31.7 2.9E+02 0.0063 26.8 9.0 67 106-175 294-363 (392)
196 COG0761 lytB 4-Hydroxy-3-methy 31.5 54 0.0012 32.9 3.7 67 107-174 208-281 (294)
197 COG2331 Uncharacterized protei 31.0 19 0.00042 29.3 0.4 43 48-96 11-58 (82)
198 TIGR00393 kpsF KpsF/GutQ famil 31.0 68 0.0015 30.2 4.2 55 108-162 44-99 (268)
199 PRK14714 DNA polymerase II lar 30.9 27 0.00058 41.4 1.6 56 42-111 1241-1301(1337)
200 cd00729 rubredoxin_SM Rubredox 30.8 41 0.00088 22.8 1.9 26 49-85 2-27 (34)
201 PRK11302 DNA-binding transcrip 30.5 66 0.0014 30.7 4.1 54 108-161 172-225 (284)
202 smart00659 RPOLCX RNA polymera 30.3 30 0.00065 24.9 1.3 26 50-85 3-28 (44)
203 PRK10886 DnaA initiator-associ 30.1 80 0.0017 29.5 4.5 55 108-162 106-164 (196)
204 PF01155 HypA: Hydrogenase exp 29.9 26 0.00056 29.9 1.0 35 40-85 61-95 (113)
205 PRK08166 NADH dehydrogenase su 29.8 33 0.00071 38.7 2.1 41 107-147 367-409 (847)
206 PF13692 Glyco_trans_1_4: Glyc 29.2 1E+02 0.0022 25.2 4.5 80 87-174 52-133 (135)
207 cd02774 MopB_Res-Cmplx1_Nad11- 29.0 62 0.0013 33.0 3.8 44 105-148 142-188 (366)
208 PRK14873 primosome assembly pr 28.8 1.3E+02 0.0029 33.4 6.5 73 4-88 357-435 (665)
209 TIGR02164 torA trimethylamine- 28.8 49 0.0011 37.2 3.2 51 109-159 208-273 (822)
210 PF14353 CpXC: CpXC protein 28.3 27 0.00059 29.9 1.0 17 44-60 33-49 (128)
211 PRK09462 fur ferric uptake reg 28.3 90 0.002 27.3 4.3 48 3-61 53-102 (148)
212 KOG1532 GTPase XAB1, interacts 28.3 43 0.00093 33.9 2.4 64 110-175 17-84 (366)
213 PRK14991 tetrathionate reducta 28.1 84 0.0018 36.6 5.1 53 108-160 282-344 (1031)
214 COG3357 Predicted transcriptio 27.1 37 0.0008 28.6 1.4 27 49-84 58-84 (97)
215 PF03029 ATP_bind_1: Conserved 26.9 29 0.00063 33.2 0.9 45 117-161 1-49 (238)
216 PRK10892 D-arabinose 5-phospha 26.1 76 0.0016 31.1 3.7 55 108-162 91-146 (326)
217 PLN02275 transferase, transfer 26.0 3E+02 0.0065 27.3 8.0 80 88-171 286-368 (371)
218 cd03822 GT1_ecORF704_like This 26.0 3.6E+02 0.0078 25.1 8.2 86 86-175 245-333 (366)
219 PRK13936 phosphoheptose isomer 25.9 93 0.002 28.7 4.1 57 109-165 109-169 (197)
220 PRK09130 NADH dehydrogenase su 25.5 1.2E+02 0.0025 33.8 5.3 45 106-150 359-406 (687)
221 PRK15102 trimethylamine N-oxid 25.1 67 0.0015 36.1 3.5 46 109-154 211-270 (825)
222 PRK03681 hypA hydrogenase nick 24.9 43 0.00093 28.6 1.5 35 41-85 62-96 (114)
223 cd02771 MopB_NDH-1_NuoG2-N7 Mo 24.9 69 0.0015 33.1 3.3 18 107-124 141-158 (472)
224 PRK11543 gutQ D-arabinose 5-ph 24.6 76 0.0016 31.0 3.4 54 108-161 86-140 (321)
225 PRK12380 hydrogenase nickel in 24.4 47 0.001 28.4 1.6 35 40-85 61-95 (113)
226 TIGR01826 CofD_related conserv 23.9 3.2E+02 0.007 27.6 7.7 73 101-181 162-243 (310)
227 cd03816 GT1_ALG1_like This fam 23.4 3.6E+02 0.0077 27.4 8.1 84 89-176 295-381 (415)
228 PRK08197 threonine synthase; V 23.1 44 0.00096 34.2 1.5 15 48-62 6-20 (394)
229 TIGR00100 hypA hydrogenase nic 23.1 52 0.0011 28.2 1.7 34 41-85 62-95 (115)
230 COG1439 Predicted nucleic acid 22.9 45 0.00098 31.1 1.4 27 48-87 138-164 (177)
231 PLN02569 threonine synthase 22.7 49 0.0011 35.2 1.8 26 49-86 49-74 (484)
232 COG1579 Zn-ribbon protein, pos 22.6 46 0.001 32.4 1.4 41 39-86 191-231 (239)
233 COG3925 N-terminal domain of t 22.1 66 0.0014 27.3 2.0 32 110-149 39-70 (103)
234 PF03604 DNA_RNApol_7kD: DNA d 22.0 81 0.0018 21.3 2.1 25 51-85 2-26 (32)
235 PF13580 SIS_2: SIS domain; PD 21.7 99 0.0021 26.7 3.2 36 109-144 101-136 (138)
236 TIGR00216 ispH_lytB (E)-4-hydr 21.5 1.1E+02 0.0023 30.5 3.7 71 103-174 200-277 (280)
237 PRK14715 DNA polymerase II lar 21.0 53 0.0011 39.3 1.7 57 42-113 1530-1591(1627)
238 PRK02947 hypothetical protein; 21.0 1.1E+02 0.0024 29.3 3.7 53 108-160 103-167 (246)
239 TIGR02663 nifX nitrogen fixati 20.6 3E+02 0.0064 23.2 5.9 64 102-184 54-117 (119)
240 PF02401 LYTB: LytB protein; 20.4 1.1E+02 0.0023 30.5 3.4 72 102-174 200-278 (281)
241 cd04795 SIS SIS domain. SIS (S 20.3 1.2E+02 0.0027 22.9 3.2 39 107-145 43-81 (87)
242 cd05005 SIS_PHI Hexulose-6-pho 20.2 1.8E+02 0.0039 25.9 4.7 74 96-169 17-94 (179)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-48 Score=372.69 Aligned_cols=244 Identities=52% Similarity=0.788 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
.|+.+||+|.+|++.|++++||||||||||.|+|+|+++++|||||||.+.|.+|..+|.++..+.+++.+.+.+.|...
T Consensus 100 rPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~ 179 (353)
T KOG1905|consen 100 RPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCTGR 179 (353)
T ss_pred CCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccccccccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999888888877666555432
Q ss_pred ------CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCC
Q 017188 81 ------KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK 154 (375)
Q Consensus 81 ------~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~ 154 (375)
.|.|.|++.++.|...+|...|+.|.++.+.||++|++||||+|.|..++|..+.+.|+++++||+|+|+.|+.
T Consensus 180 k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~ 259 (353)
T KOG1905|consen 180 KCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKI 259 (353)
T ss_pred ccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccch
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccHHHHHHHHHHHhccCCCCccc-hhhhhhhhhhccCCCCccccceEEeeeccCCCCccccceeeeeecCCccc
Q 017188 155 ASLVIHGFVDKVVAGVMDLLNLRIPPYIR-IDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQK 233 (375)
Q Consensus 155 adl~I~g~~devL~~L~~~L~~~iP~~~~-~~~~~~~l~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~~~~v~~~~~~~ 233 (375)
|++.|+|++|.||..||+.||++||+|++ .|++++.++.+.........|.+...++++...+.+|+..+.
T Consensus 260 A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 331 (353)
T KOG1905|consen 260 ANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLSRPGEEHTIPQPLLKNSVEETTKQEPFISTIS-------- 331 (353)
T ss_pred hheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccCCCCccccccccccccccccCCCCCccccccc--------
Confidence 99999999999999999999999999997 688888877777677788999999999999888899998887
Q ss_pred cccccccCCCceeEeeeeccc
Q 017188 234 YKEASLDKQPFQLKRRTVINE 254 (375)
Q Consensus 234 ~~~~~~~~~p~~~~~~~~~~~ 254 (375)
+.++.+|++...++....+
T Consensus 332 --spi~~~~~~~~~~k~~rr~ 350 (353)
T KOG1905|consen 332 --SPILKGPRIRTPIKNGRRV 350 (353)
T ss_pred --cccccCCCCcCCccCcccc
Confidence 1489999998876665543
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=9.6e-46 Score=351.94 Aligned_cols=171 Identities=35% Similarity=0.586 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|+++|++.+||||||||||++||. ++|+|+|||++..+|..|++.|+.+.....+ ....+|+||
T Consensus 73 ~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~Cp-- 147 (244)
T PRK14138 73 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKL-EKSDVPRCD-- 147 (244)
T ss_pred CCCHHHHHHHHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHH-hcCCCCCCC--
Confidence 59999999999999999999999999999999995 7899999999999999999999876544432 233579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|+..++++.+++++||++|||||||+|+|++.|+..++++|+++++||+++|+.|..++++|+
T Consensus 148 ~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~ 227 (244)
T PRK14138 148 DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYN 227 (244)
T ss_pred CCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence 89999999999999999998899999999999999999999999999999988999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 017188 161 GFVDKVVAGVMDLLNL 176 (375)
Q Consensus 161 g~~devL~~L~~~L~~ 176 (375)
|+++++|++|++.||+
T Consensus 228 ~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 228 MDVVEFANRVMSEGGI 243 (244)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 9999999999998875
No 3
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=9.4e-46 Score=344.03 Aligned_cols=160 Identities=67% Similarity=1.051 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|+++|++.+||||||||||++||++.++|+|+|||++..+|+.|+..|..+.....+.....+|+|+
T Consensus 47 ~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~-- 124 (206)
T cd01410 47 EPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH-- 124 (206)
T ss_pred CCCHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC--
Confidence 699999999999999999999999999999999998889999999999999999999888776555544445679999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|...++.|.+++++||++|||||||+|+|+++|+..++++|+++|+||+++++.|..+|+.|+
T Consensus 125 ~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~ 204 (206)
T cd01410 125 ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIH 204 (206)
T ss_pred CCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEe
Confidence 89999999999999999998899999999999999999999999999999988889999999999999999999999998
Q ss_pred cc
Q 017188 161 GF 162 (375)
Q Consensus 161 g~ 162 (375)
|+
T Consensus 205 ~~ 206 (206)
T cd01410 205 GD 206 (206)
T ss_pred CC
Confidence 75
No 4
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=1.2e-45 Score=349.27 Aligned_cols=166 Identities=25% Similarity=0.454 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|+++|++++||||||||||+|||++.++|+|||||++..+|..|++.|+.++....+. ....|+|+
T Consensus 68 ~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 144 (235)
T cd01408 68 KPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKCP-- 144 (235)
T ss_pred CCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccCC--
Confidence 699999999999999999999999999999999998889999999999999999999988765443332 23469999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEE
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLV 158 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~ 158 (375)
.|||.|||+||||||.+|++.+..+.+++++||++|||||||+|+|++.|+..++ .|+++|+||+++++.+ ..+|++
T Consensus 145 ~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~ 223 (235)
T cd01408 145 RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVA 223 (235)
T ss_pred CCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEE
Confidence 8999999999999999999878888889999999999999999999999997766 6899999999999998 889999
Q ss_pred EeccHHHHHHHH
Q 017188 159 IHGFVDKVVAGV 170 (375)
Q Consensus 159 I~g~~devL~~L 170 (375)
|+|+++++|++|
T Consensus 224 ~~~~~~~~l~~~ 235 (235)
T cd01408 224 LLGDCDDGVREL 235 (235)
T ss_pred EeCCHHHHHHhC
Confidence 999999999875
No 5
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.2e-45 Score=352.45 Aligned_cols=163 Identities=32% Similarity=0.475 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhc-----------
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIG----------- 69 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~----------- 69 (375)
+||.+|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|+.|++.|+++.....+.
T Consensus 72 ~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (260)
T cd01409 72 QPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA 149 (260)
T ss_pred CCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc
Confidence 59999999999999999999999999999999997 68999999999999999999987654322110
Q ss_pred ---------------ccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhh
Q 017188 70 ---------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKC 134 (375)
Q Consensus 70 ---------------~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a 134 (375)
....+|+|+ .|||.|||+||||||.+|++.++.|.+++++||++|||||||+|+|++.|+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a 227 (260)
T cd01409 150 GQAPDGDVDLEDEQVAGFRVPECE--RCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAA 227 (260)
T ss_pred ccCCCcccccchhhcccCCCCCCC--CCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHH
Confidence 011368998 899999999999999999988999999999999999999999999999999989
Q ss_pred hcCCCeEEEECCCCCCCCCCceEEEeccHHHHH
Q 017188 135 LRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 167 (375)
Q Consensus 135 ~~~G~~lIiINlq~t~~d~~adl~I~g~~devL 167 (375)
.++|+++|+||+++|+.|..+++.|+|+++++|
T Consensus 228 ~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 228 AEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999999999999875
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=343.84 Aligned_cols=168 Identities=31% Similarity=0.485 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhh-c--ccCcCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETI-G--LKETSRRC 77 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i-~--~~~~~P~C 77 (375)
+||++|+|||+|+++|++.+||||||||||++||. ++|+|||||++..+|..|++.++.+...... . ....+|+|
T Consensus 91 ~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C 168 (271)
T PTZ00409 91 ELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC 168 (271)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC
Confidence 59999999999999999999999999999999996 6899999999999999999987754332111 0 12346899
Q ss_pred CCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC-CCce
Q 017188 78 SDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKAS 156 (375)
Q Consensus 78 p~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d-~~ad 156 (375)
+ |||.|||+||||||.+|++.++.|.+++++||++|||||||+|+|++.||..++++|+++|+||+++|+.+ ..+|
T Consensus 169 ~---Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d 245 (271)
T PTZ00409 169 P---CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISD 245 (271)
T ss_pred C---CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCcccc
Confidence 6 99999999999999999988999999999999999999999999999999989999999999999999987 5689
Q ss_pred EEEeccHHHHHHHHHHHh
Q 017188 157 LVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 157 l~I~g~~devL~~L~~~L 174 (375)
++|+|++++++. +.+.|
T Consensus 246 ~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 246 YHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred EEEECcHHHHHH-HHHHh
Confidence 999999999985 44443
No 7
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=3.2e-43 Score=329.96 Aligned_cols=156 Identities=41% Similarity=0.626 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||. ++|+|+|||++..+|+.|++.|+++.. ..+ ....+|+||
T Consensus 67 ~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~-~~~~~p~C~-- 140 (222)
T cd01413 67 QPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEV-KYA-KKHEVPRCP-- 140 (222)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHH-HHh-ccCCCCcCC--
Confidence 59999999999999999999999999999999995 789999999999999999999877643 222 124579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|++.++.|.+++.+||++|||||||+|+|++.|+..++++|+++|+||+++++.|..++++|+
T Consensus 141 ~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~ 220 (222)
T cd01413 141 KCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQ 220 (222)
T ss_pred CCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence 89999999999999999998899999999999999999999999999999998999999999999999999999999998
Q ss_pred cc
Q 017188 161 GF 162 (375)
Q Consensus 161 g~ 162 (375)
|+
T Consensus 221 ~~ 222 (222)
T cd01413 221 DK 222 (222)
T ss_pred CC
Confidence 74
No 8
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=9e-43 Score=338.05 Aligned_cols=172 Identities=28% Similarity=0.425 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhc-----------
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIG----------- 69 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~----------- 69 (375)
+||++|++|++|+++|++++||||||||||++||. ++|+|+|||++..+|.+|++.|+++.....+.
T Consensus 82 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (285)
T PRK05333 82 QPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA 159 (285)
T ss_pred CCCHHHHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc
Confidence 59999999999999999999999999999999996 78999999999999999999887553221110
Q ss_pred ---------------ccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhh
Q 017188 70 ---------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKC 134 (375)
Q Consensus 70 ---------------~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a 134 (375)
....+|+|+ .|||.|||+||||||.+|++.+..+.+++++||++|||||||.|+|++.++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iP~C~--~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a 237 (285)
T PRK05333 160 APAPDGDADLEWAAFDHFRVPACP--ACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWA 237 (285)
T ss_pred ccCCCccccccccccccCCCCCCC--CCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHH
Confidence 012368999 899999999999999999988999999999999999999999999999999888
Q ss_pred hcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhcc
Q 017188 135 LRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 135 ~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~~ 176 (375)
.++|+++|+||+++++.+..+++.|.|+++++|++|++.|++
T Consensus 238 ~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 238 AQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGL 279 (285)
T ss_pred HHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 889999999999999999999999999999999999999885
No 9
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.5e-42 Score=328.71 Aligned_cols=165 Identities=40% Similarity=0.634 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|++.|++++||||||||||++||. ++|+|+||+++..+|+.|++.|..+.... ...|+||
T Consensus 76 ~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~-- 146 (242)
T PRK00481 76 KPNAAHRALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYLK-----PEPPRCP-- 146 (242)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhcc-----CCCCCCC--
Confidence 69999999999999999999999999999999996 79999999999999999999887664331 2367899
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|+..+..+.+++++||++|||||||+|+|+++|+..++++|+++|+||++++..+..+++.|.
T Consensus 147 ~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~ 226 (242)
T PRK00481 147 KCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIH 226 (242)
T ss_pred CCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEE
Confidence 89999999999999999988889999999999999999999999999999987888999999999999999999999999
Q ss_pred ccHHHHHHHHHHHh
Q 017188 161 GFVDKVVAGVMDLL 174 (375)
Q Consensus 161 g~~devL~~L~~~L 174 (375)
|+++++|++|++.|
T Consensus 227 ~~~~~~l~~l~~~~ 240 (242)
T PRK00481 227 GKAGEVVPELVEEL 240 (242)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 10
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=5.2e-43 Score=334.36 Aligned_cols=170 Identities=36% Similarity=0.583 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++++||||||||||++||+ ++|+||||++...+|..|+..|..+...... ....+|+|+
T Consensus 76 ~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C~-- 150 (250)
T COG0846 76 QPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFI-EDGLIPRCP-- 150 (250)
T ss_pred CCCHHHHHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhc-ccCCCCcCc--
Confidence 69999999999999999999999999999999998 5999999999999999999988755422222 122579999
Q ss_pred CCCc-cccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEE
Q 017188 81 KCGA-KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI 159 (375)
Q Consensus 81 ~CgG-~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I 159 (375)
.||+ .|||+||||||.+|.+.++.+.+.+++||++||+||||.|+|++.+|..++++|+.+++||+++++++..+|+.|
T Consensus 151 ~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i 230 (250)
T COG0846 151 KCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVI 230 (250)
T ss_pred cCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHH
Confidence 8999 999999999999999989999999999999999999999999999998889999999999999999999999999
Q ss_pred eccHHHHHHHHHHHhc
Q 017188 160 HGFVDKVVAGVMDLLN 175 (375)
Q Consensus 160 ~g~~devL~~L~~~L~ 175 (375)
+++++++++.|++.+.
T Consensus 231 ~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 231 RGDAGEVLPLLLEELL 246 (250)
T ss_pred HhhHHHHHHHHHHHhh
Confidence 9999999999988764
No 11
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=3.7e-42 Score=321.89 Aligned_cols=162 Identities=35% Similarity=0.541 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|+++|++++||||||||||++||+ ++|+|+||+++.++|..|++.+..+... ....+|+||
T Consensus 63 ~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C~-- 134 (224)
T cd01412 63 QPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRCP-- 134 (224)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCCC--
Confidence 59999999999999999999999999999999998 8999999999999999999988664221 134579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|+ .++.+.++++++|++|||||||+|.|++.|+..++++|+++|+||++++..+..+++.|+
T Consensus 135 ~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~ 213 (224)
T cd01412 135 KCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFR 213 (224)
T ss_pred CCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEE
Confidence 8999999999999999998 789999999999999999999999999999988888999999999999999999999999
Q ss_pred ccHHHHHHHHH
Q 017188 161 GFVDKVVAGVM 171 (375)
Q Consensus 161 g~~devL~~L~ 171 (375)
|+++++|++|+
T Consensus 214 g~~~~~l~~l~ 224 (224)
T cd01412 214 GKAGEVLPALL 224 (224)
T ss_pred CCHHHHHHHhC
Confidence 99999999873
No 12
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=8.4e-42 Score=324.88 Aligned_cols=162 Identities=27% Similarity=0.409 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHc--CCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCC
Q 017188 1 MPGMTHMALVELEKA--GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCS 78 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~--G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp 78 (375)
+||.+|++|++|++. |++++||||||||||++||. ++|+|+|||++..+|..|++.|.++.... ...|.|+
T Consensus 69 ~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~ 141 (242)
T PTZ00408 69 KPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRCK 141 (242)
T ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCccc
Confidence 599999999999986 88899999999999999996 68999999999999999999886643221 2368998
Q ss_pred CcCCC--ccccccEEEcCC-CCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCc
Q 017188 79 DLKCG--AKLRDTVLDWED-ALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKA 155 (375)
Q Consensus 79 ~~~Cg--G~LRP~VVlFGE-~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~a 155 (375)
.|| |.+||+|||||| .+|.+.+ .+++.+||++|||||||+|+|+++|+..++++|+++|+||++++..+..+
T Consensus 142 --~Cg~~g~lrP~vV~FGE~~~~~~~~---~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~ 216 (242)
T PTZ00408 142 --CCGCVGTLRPHIVWFGEMPLYMDEI---ESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQF 216 (242)
T ss_pred --cCCCCCCCCCCEEEcCCCCCcHHHH---HHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccC
Confidence 677 999999999999 7775444 34588999999999999999999999999999999999999999988888
Q ss_pred eEEEeccHHHHHHHHHHHh
Q 017188 156 SLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 156 dl~I~g~~devL~~L~~~L 174 (375)
+++|.|+++++|++|++.+
T Consensus 217 ~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 217 DESIYGKASVIVPAWVDRV 235 (242)
T ss_pred CEEEECCHHHHHHHHHHHH
Confidence 9999999999999998765
No 13
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.1e-41 Score=318.13 Aligned_cols=156 Identities=48% Similarity=0.755 Sum_probs=143.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||++ +|+|+||+++..+|+.|++.++.+.....+ ....+|+||
T Consensus 63 ~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C~-- 137 (218)
T cd01407 63 QPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRCP-- 137 (218)
T ss_pred CCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcCC--
Confidence 699999999999999999999999999999999995 999999999999999999988766433222 234679999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|+. ++++.+++.+||++|||||||.|+|++.|+..+.++|+++|+||+++++.|..+|+.|+
T Consensus 138 ~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~ 216 (218)
T cd01407 138 KCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVIL 216 (218)
T ss_pred CCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEe
Confidence 89999999999999999998 99999999999999999999999999999998888999999999999999999999998
Q ss_pred cc
Q 017188 161 GF 162 (375)
Q Consensus 161 g~ 162 (375)
|+
T Consensus 217 ~~ 218 (218)
T cd01407 217 GD 218 (218)
T ss_pred CC
Confidence 75
No 14
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=3.3e-41 Score=334.57 Aligned_cols=145 Identities=27% Similarity=0.400 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|+.|+++|++.+||||||||||++||++.++|+|||||++..+|..|++.|+.+.....+ ....+|+|+
T Consensus 99 ~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~-~~~~vP~C~-- 175 (349)
T PTZ00410 99 QPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA-RSGKVPHCS-- 175 (349)
T ss_pred CCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh-hcCCCCCCC--
Confidence 69999999999999999999999999999999999888999999999999999999988776544333 234579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP 150 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~ 150 (375)
.|||.|||+||||||.+|+..++ +.+++++||++|||||||+|+|++.|+..+. .++++|+||++++.
T Consensus 176 ~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~ 243 (349)
T PTZ00410 176 TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVG 243 (349)
T ss_pred CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccC
Confidence 89999999999999999988777 8899999999999999999999999997766 68999999999764
No 15
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=9e-41 Score=314.17 Aligned_cols=152 Identities=32% Similarity=0.502 Sum_probs=139.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|++.| +.+||||||||||++||. ++|+|+|||++..+|..|++.|+++.. ..+|+|+
T Consensus 73 ~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~-------~~~p~C~-- 140 (225)
T cd01411 73 KPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEY-------LKSPYHA-- 140 (225)
T ss_pred CCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhc-------CCCCCCC--
Confidence 6999999999999988 899999999999999995 789999999999999999988765422 1368999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||.+|++.++.+.+++++||++|+|||||.|+|+++|+..++ +|+++|+||+++++.+..+|+.|+
T Consensus 141 ~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~ 219 (225)
T cd01411 141 KCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIK 219 (225)
T ss_pred CCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhc
Confidence 8999999999999999999889999999999999999999999999999987654 799999999999999999999999
Q ss_pred ccHHHH
Q 017188 161 GFVDKV 166 (375)
Q Consensus 161 g~~dev 166 (375)
| ++++
T Consensus 220 ~-~~~~ 224 (225)
T cd01411 220 D-AVKV 224 (225)
T ss_pred c-hhhh
Confidence 9 8875
No 16
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=2e-37 Score=287.28 Aligned_cols=156 Identities=47% Similarity=0.711 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||++.++|+|+||++...+|..|++.++.+..... ...|+|+
T Consensus 65 ~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C~-- 138 (222)
T cd00296 65 KPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRCP-- 138 (222)
T ss_pred CCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCCC--
Confidence 6999999999999999999999999999999999988899999999999999999998876544322 4579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEE
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLV 158 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~ 158 (375)
.|||.|||+|++|||.+|+..+..+.+++.+||++|+|||||+|+|+..|+..+.++|+++++||++++..+ ..+++.
T Consensus 139 ~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~ 218 (222)
T cd00296 139 KCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLV 218 (222)
T ss_pred CCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEE
Confidence 899999999999999999877888999999999999999999999999999888889999999999999999 788888
Q ss_pred Eecc
Q 017188 159 IHGF 162 (375)
Q Consensus 159 I~g~ 162 (375)
++|+
T Consensus 219 ~~~~ 222 (222)
T cd00296 219 ILGD 222 (222)
T ss_pred EeCC
Confidence 8764
No 17
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=1.2e-37 Score=281.94 Aligned_cols=120 Identities=48% Similarity=0.790 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||.+|++|++|++.|++++||||||||||++||++ +|+|||||++..+|..|++.|..+.....+. ....|+|+
T Consensus 59 ~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~~~C~-- 133 (178)
T PF02146_consen 59 EPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSID-EEEPPRCP-- 133 (178)
T ss_dssp ---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHH-TTSSCBCT--
T ss_pred CCChhHHHHHHHHHhhhhccceecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhccccc-cccccccc--
Confidence 599999999999999999999999999999999995 9999999999999999999988765544442 34567999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccc
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITP 126 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~P 126 (375)
.||+.|||+||||||.+| +.+..|.+++++|||+|||||||+|+|
T Consensus 134 ~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 134 KCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp TTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 899999999999999999 778999999999999999999999998
No 18
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.8e-37 Score=285.76 Aligned_cols=166 Identities=30% Similarity=0.434 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhh------------
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETI------------ 68 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i------------ 68 (375)
+||++|+||+.||+.|++.++||||||+||.|||+ +.+.||||+...+.|..|+...+++...+.+
T Consensus 111 qPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~~~ 188 (305)
T KOG2683|consen 111 QPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEAIV 188 (305)
T ss_pred CCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcchhhhcc
Confidence 69999999999999999999999999999999997 7899999999999999999987775322111
Q ss_pred --------c---------ccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccch
Q 017188 69 --------G---------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLP 131 (375)
Q Consensus 69 --------~---------~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp 131 (375)
+ ..-.+|.|. +|||.|||+|+||||++|.+..+.+.+.+.+||-+||+||||.|+...+++
T Consensus 189 ~~~~~~pDgDv~lpl~~e~gF~IPeC~--~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i 266 (305)
T KOG2683|consen 189 SPGHQRPDGDVELPLEFEEGFQIPECE--KCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFI 266 (305)
T ss_pred CccccCCCCCeecchhhhhcccCCccc--ccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHH
Confidence 0 011368998 999999999999999999988888899999999999999999999999999
Q ss_pred HhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHH
Q 017188 132 LKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGV 170 (375)
Q Consensus 132 ~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L 170 (375)
..|...+.++.|||.+||..|..|++.|+..|++||+++
T Consensus 267 ~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 267 RHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred HHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 999999999999999999999999999999999998763
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.4e-37 Score=286.84 Aligned_cols=173 Identities=27% Similarity=0.426 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCC-CCCcccchhhhhhhcccCcCCCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPS-CGSEYFRDFEVETIGLKETSRRCSD 79 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~-C~~~y~~d~~v~~i~~~~~~P~Cp~ 79 (375)
+||.+||+|+.|.++|.+.++||||||+|++.||+|.+.++|.||++...+|.. |++.|+.++....+. .+.+|+|+
T Consensus 104 kPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~-~~~vpkC~- 181 (314)
T KOG2682|consen 104 KPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM-SEVVPKCE- 181 (314)
T ss_pred CchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH-hccCCCCc-
Confidence 699999999999999999999999999999999999999999999999999995 999999887766653 45678999
Q ss_pred cCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC----CCCc
Q 017188 80 LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK----DKKA 155 (375)
Q Consensus 80 ~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~----d~~a 155 (375)
.|+|++||+||||||.+|..+++..+.....+||+|||||||+|+|+++||..+. ...+.++||.++..- ....
T Consensus 182 -vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~vp-~~v~RlLiNre~~Gp~~~~~r~r 259 (314)
T KOG2682|consen 182 -VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKVP-LSVPRLLINREKAGPFLGMIRYR 259 (314)
T ss_pred -hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhhh-hcCceeEecccccCccccCcccc
Confidence 8999999999999999999988888888899999999999999999999998654 667889999998762 2446
Q ss_pred eEEEeccHHHHHHHHHHHhccC
Q 017188 156 SLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 156 dl~I~g~~devL~~L~~~L~~~ 177 (375)
|+.+.|+||+-.+.|++.|||.
T Consensus 260 Dv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 260 DVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred cchhhccHHHHHHHHHHHhCcH
Confidence 8999999999999999999985
No 20
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.2e-34 Score=284.26 Aligned_cols=179 Identities=22% Similarity=0.322 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
.|++.|.+|+.|+++|++.++|||||||||++||+...+++||||++....|+.|+..++.+...+.+ .....|.||
T Consensus 155 ~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~-~~~~vp~CP-- 231 (412)
T KOG2684|consen 155 NPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDI-RNQEVPVCP-- 231 (412)
T ss_pred CCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHH-hcCcCccCc--
Confidence 48999999999999999999999999999999999888899999999999999999988877444444 345678999
Q ss_pred CCCc------------------cccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEE
Q 017188 81 KCGA------------------KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIV 142 (375)
Q Consensus 81 ~CgG------------------~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lI 142 (375)
.|.+ .|||+||||||.+|+.+..........+||+|||||||.|+|+++++... .+..+.|
T Consensus 232 ~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~-~~~vpqI 310 (412)
T KOG2684|consen 232 DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSF-PAKVPQI 310 (412)
T ss_pred ccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhh-cccCcEE
Confidence 7865 89999999999999987776666777889999999999999999998643 3556999
Q ss_pred EECCCCCCCCCCceEEEeccHHHHHHHHHHHhccCCCCccch
Q 017188 143 IVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 184 (375)
Q Consensus 143 iINlq~t~~d~~adl~I~g~~devL~~L~~~L~~~iP~~~~~ 184 (375)
.||.++.+. ..+|+-+.++||.+...+...+||.+|.-.-.
T Consensus 311 liNr~~v~h-~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~ 351 (412)
T KOG2684|consen 311 LINRDPVPH-AEFDVELLGDCDDVIRLLCQKCGWLKPLLSLN 351 (412)
T ss_pred EecCccccc-cccChhhccchHHHHHHHHhhccccchHhhhh
Confidence 999997775 45788899999999999999999988766543
No 21
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.35 E-value=0.013 Score=50.38 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=49.0
Q ss_pred hHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHH
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 170 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L 170 (375)
..+.+.+++||++|++|+++.-........ .....+++|.||.++....+ ..++.|.|++..+|.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 456678899999999999986544433211 12233489999999987653 36899999999988775
No 22
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=96.30 E-value=0.019 Score=46.84 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=56.1
Q ss_pred cceEEeeeccCCCCccccceeeeeecCCccccccccccCCCceeEeeeecccceeEEEEEeecCCCCCCcceeeeeeccc
Q 017188 203 NWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFK 282 (375)
Q Consensus 203 ~w~l~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 282 (375)
.|++-+.+.++. ....++++|.-..-..-.---.++..|||.+... .=+.|+|.|++.|.+..+.....|.|...|+
T Consensus 3 ~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~--GWGeF~i~I~i~f~~~~~~~~~~~~h~L~l~ 79 (84)
T PF03366_consen 3 KWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTET--GWGEFEIPIKIHFKDPSNEKPVTIQHDLKLH 79 (84)
T ss_dssp EEEEEEEECCCT---TTTEEEEEEES-TTSSS-EEECSSTTEEEEEE--ESS--EEEEEEECCCGGCTCEEEEEEE--SS
T ss_pred EEEEEEEeCCCC-CccceEEEEEEECCCCCCCCceEecCCCCEEEEe--EeccEEEEEEEEEeCCCCCCcEEEEEEEEcC
Confidence 699999998887 5899999998864322222224789999999744 3489999999999997778888898888887
Q ss_pred cC
Q 017188 283 VP 284 (375)
Q Consensus 283 ~~ 284 (375)
..
T Consensus 80 ~~ 81 (84)
T PF03366_consen 80 QD 81 (84)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 23
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=96.20 E-value=0.0059 Score=57.72 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHcCC-ccEEEecCcchhHhhc
Q 017188 1 MPGMTHMALVELEKAGI-LKFVISQNVDGLHLRS 33 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~-l~~VITQNIDGLH~kA 33 (375)
.|+..|.+|+.|...+. ...+||+|.|.|.++|
T Consensus 79 ~~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 79 EPSPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CCCHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 48999999999987654 5689999999999986
No 24
>PRK08322 acetolactate synthase; Reviewed
Probab=94.07 E-value=0.12 Score=54.38 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
+...+++||++|+|||++.-.+...+. ...+.++|.||.++...+ ...++.|.||+..+|++|.+.+.
T Consensus 256 ~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 456778999999999998765543331 134568999999887644 34689999999999999988774
No 25
>PRK07524 hypothetical protein; Provisional
Probab=94.02 E-value=0.092 Score=55.31 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=51.8
Q ss_pred hHHHHHhhcCCEEEEEccCcccccccc-chHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhcc
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACN-LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~-Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~~ 176 (375)
..+.+.+++|||+|++|+++....... ... ....++++|.||.++.... ...++.|.||+..+|++|.+.+..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDG-GFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCcccccccccc-ccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 356667889999999999985443211 000 1123567999999886543 246889999999999999988764
No 26
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.89 E-value=0.13 Score=55.46 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|+|||++.......+.. ...+.++|.||.++.... ...++.|.||+..+|++|.+.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDE--FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhh--cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999976444332221 134578999999876543 35689999999999999998774
No 27
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.85 E-value=0.14 Score=54.64 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=52.6
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|+|||++.-+....... ....+++|.||.++....+ ..++.|.||+..+|+.|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAK--YCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhh--cCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999987665433311 1234689999998876543 4689999999999999988764
No 28
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.80 E-value=0.14 Score=54.65 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=52.9
Q ss_pred hHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
..+.+.+.+||++|+||+++.-........ ...+.++|.||.++....+ ..++.|.||+..+|++|++.|.
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDRTTNNLEK--YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 345567889999999999987655433321 1235689999998776432 4689999999999999988775
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.57 E-value=0.17 Score=53.87 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=52.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+||+++.......... .....++|.||.++..... ..++.|.+++.++|+.|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAK--YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 34567789999999999987665543322 1245689999998765433 4689999999999999988774
No 30
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.39 E-value=0.17 Score=54.19 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHh
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L 174 (375)
.+.+.+++||++|++|+++.-........ ...+.++|.||.++.... ...++.|.||+..+|.+|.+.+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34567789999999999986544333211 224577999998876643 3468999999999999998866
No 31
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.39 E-value=0.16 Score=54.71 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=51.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC--CCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++||++.......+.. ...++++|.||.++... ....++.|.||+..+|++|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~--~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS--FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999987553322211 12456789999987533 345689999999999999988774
No 32
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.36 E-value=0.29 Score=52.39 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=51.2
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC--CCCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d~~adl~I~g~~devL~~L~~~L~ 175 (375)
+...+.+|||+|++|+++.-........ ...+.++|.||.++... ....++.|.+|+..+|++|.+.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDE--FACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhH--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 4557789999999999987554333211 23467899999987643 334679999999999999988775
No 33
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.29 E-value=0.19 Score=53.92 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=51.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+|||++.-........ ...+.++|.||.++..... ..++.|.|++..+|++|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDA--FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567789999999999986544333211 1245678999998876543 4689999999999999988764
No 34
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.21 E-value=0.2 Score=53.32 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+...+.+||++|++|+++.-.+....... ...+.++|.||.++..... ..++.|.|++..+|++|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567899999999999876654333211 1235689999998876543 4678999999999999988764
No 35
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.20 E-value=0.21 Score=53.13 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=50.9
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|+||+++.-.....+.. .....++|.||.++.... ...++.|.|++..+|+.|.+.+.
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSE--FAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 4457789999999999987554333211 123567999999877543 24578999999999999988774
No 36
>PRK06154 hypothetical protein; Provisional
Probab=93.15 E-value=0.21 Score=53.38 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+.+.+++||++|+||+++.-...... ...+.++|.||.++.... ...++.|.||+..+|+.|++.|..
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~~----~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 343 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGLP----MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRR 343 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcc----CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhh
Confidence 455678899999999999875322111 234578888988876432 346899999999999999987753
No 37
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.13 E-value=0.24 Score=52.26 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=50.5
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|++|+++.-+...... ...+.++|.||.++.... ...++.|.|++..+|+.|.+.+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 3456788999999999997644322221 123468999999987654 34578999999999999988764
No 38
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.13 E-value=0.21 Score=53.25 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=52.1
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|++|+++.......... ...+.++|.||.++..... ..++.|.+++..+|+.|.+.|+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~--~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAK--FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 44567789999999999987655433221 1235689999998876543 4689999999999999988764
No 39
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.11 E-value=0.21 Score=53.34 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+++.-........ .....++|.||.++....+ ..++.|.||+..+|++|.+.|+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLEL--FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 34567889999999999987554332211 1234678999988876543 4689999999999999988764
No 40
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.00 E-value=0.26 Score=52.58 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC-----CCCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK-----DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~-----d~~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+++|||+|+|||++...+.... ...++++|.||.++... ....++.|.||+..++.+|.+.|.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~----~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKIR----PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCcccccc----CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 34566789999999998753332111 12456899999987643 234589999999999999998886
No 41
>PLN02470 acetolactate synthase
Probab=92.86 E-value=0.26 Score=52.73 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=50.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+||+++.......... .....++|.||.++.... ...++.|.+|+..+|+.|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEA--FASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 34567789999999999986554332211 123467899999876543 24578999999999999988775
No 42
>PRK05858 hypothetical protein; Provisional
Probab=92.56 E-value=0.37 Score=51.00 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=49.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+++.-...... ...+.++|.|+.++..... ..++.|.|++..++++|.+.+.
T Consensus 255 ~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 255 ARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcc
Confidence 344677899999999998754322211 1234789999999765443 4678999999999999988765
No 43
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.53 E-value=0.26 Score=52.31 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhh-hcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhccCCCC
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKC-LRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNLRIPP 180 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a-~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~~~iP~ 180 (375)
.+.+.+++|||+|++|+++.-.+...+.... .....++|.||.++..... ..++.|.|++..+|++|.+.+....+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~ 342 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPPASPA 342 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccccchh
Confidence 4556778999999999998655543221111 0135688999988765432 458999999999999998765433344
Q ss_pred c
Q 017188 181 Y 181 (375)
Q Consensus 181 ~ 181 (375)
|
T Consensus 343 ~ 343 (557)
T PRK08199 343 W 343 (557)
T ss_pred H
Confidence 4
No 44
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.50 E-value=0.35 Score=51.31 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC--CCCceEEEeccHHHHHHHHHHHhc
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+++|||+|++|+++.-++...-... ...+.++|.|+.++... ....++.|.|++..+|++|.+.|.
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 260 SFALAEADVVMLVGARLNWLLSHGKGKL-WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred HHHHhcCCEEEEECCCCchhhccCchhh-cCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 3467899999999999874433211111 12356888888877543 334578999999999999998774
No 45
>PRK08266 hypothetical protein; Provisional
Probab=92.34 E-value=0.22 Score=52.60 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=50.2
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC-CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d-~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+++... ..... ....+.++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWP--WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-ccccc--ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998755 22221 1233568899988765533 34689999999999999988765
No 46
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.32 E-value=0.29 Score=51.75 Aligned_cols=69 Identities=12% Similarity=0.281 Sum_probs=49.6
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHh
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L 174 (375)
.+...+++||++|++||++.-.-...+.. ...+.++|.||.++.... ...++.|.+++..+|++|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNT--FAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCccc--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 45567789999999999976433322211 123467899998876543 3468999999999999997754
No 47
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.28 E-value=0.33 Score=51.97 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=50.4
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+++.-........ ...+.++|.||.++.... ...++.|.+++..+|.+|.+.+.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVEV--YTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 4566789999999999976443322211 234568999998877643 34679999999999999988763
No 48
>PRK08611 pyruvate oxidase; Provisional
Probab=92.14 E-value=0.33 Score=51.84 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+|||++..... + ..+.++|.||.++..... ..++.|.+|+..+|++|.+.+.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 355677899999999998743221 1 123689999998765432 4578999999999999988775
No 49
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.14 E-value=0.32 Score=52.10 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+|||++.......... ....+.++|.||.++.... ...++.|.|++..+|+.|.+.+.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAH-FASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh-cCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 35567789999999999987554322111 1123478999999876543 24689999999999999988763
No 50
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.10 E-value=0.36 Score=51.31 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=50.9
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+++.......... ...+.++|.||.++..... ..++.|.+|+.++|++|.+.+.
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQ--FCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 4457789999999999987554332211 2345689999998876543 4689999999999999987664
No 51
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.09 E-value=0.33 Score=51.72 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+|||++.-........ .....++|.||.++....+ ..++.|.+|+..+|..|.+.|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKT--FAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 34567789999999999986433222211 1234679999998775433 3578999999999999988764
No 52
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.08 E-value=0.33 Score=51.50 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+...+.+||++|+||+++.-.....+.. ...+.++|.||.++.... ...++.|.||+..+|+.|.+.+.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAK--FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 44567789999999999986543322211 123567999999876533 24589999999999999998774
No 53
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.08 E-value=0.37 Score=51.36 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC-CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d-~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|++|+.+.-.....+.. ...+.++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 45667889999999999987655433321 124578999998875432 22368899999999999988774
No 54
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.05 E-value=0.31 Score=52.27 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=51.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+...+.+|||+|+|||.+.=.... +..... ... +|-|+.++....+ ..++.|.||+..+|.+|.+.+.-
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~-~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAP-PAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCC-cCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 4566778899999999998854444 222222 222 8889999876654 46899999999999999988763
No 55
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.95 E-value=0.3 Score=52.23 Aligned_cols=72 Identities=28% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHHHhhcCCEEEEEccCcccccccc-chHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACN-LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~-Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+|||++.-..... ........++++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 34567789999999999986332210 00001124678999998876543 34688999999999999998885
No 56
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.90 E-value=0.38 Score=51.17 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+.+.+++||++|++|+++.-........ ...+.++|.||.++.... ...++.|.||+..+|+.|.+.+..
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 338 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLAS--FAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY 338 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc
Confidence 35567889999999999976433222211 124567899998876533 346899999999999999987753
No 57
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.88 E-value=0.43 Score=50.84 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
..+++||++|+||+++.-.+....... ...+.++|.|+.++.... ...++.|.||+..+|++|.+.+.
T Consensus 268 ~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 268 LALANADVVLLVGARLNWLLSHGKGKT-WGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHhcCCEEEEeCCCCchhcccCchhc-cCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 457899999999999864432211111 124578898888776543 34578999999999999988775
No 58
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.83 E-value=0.43 Score=51.08 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=50.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|+||+.+.-........ ...+.++|.||.++..... ..++.|.+|+..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS--FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc--cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 44567889999999999876333222211 1245678999988765432 3578999999999999988764
No 59
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.70 E-value=0.39 Score=51.57 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=49.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+.+.+++|||+|+|||++....+ ++ ...++++|.||.++.... ...++.|.+|+..+|++|.+.|.-
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~~~--~~---~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYSEF--LP---KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER 334 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHHhc--CC---CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc
Confidence 456678899999999999742211 11 123568999998876543 245788999999999999887753
No 60
>PF13289 SIR2_2: SIR2-like domain
Probab=91.69 E-value=0.21 Score=42.43 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcC-CC---eEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhccC
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRG-GG---KIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~-G~---~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~~~ 177 (375)
.+...+-.+.-+|+||-|+.=.....+...+.+. +. +.++|.+.+. ++....+++..|++
T Consensus 78 ~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 78 NFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence 3333344677888889998744444454333322 22 3444444433 35555666666653
No 61
>PRK08617 acetolactate synthase; Reviewed
Probab=91.46 E-value=0.44 Score=50.43 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=49.4
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+|||+|++|+++.-+...... ...+.++|.||.++...+. ..++.|.+++..+|+.|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 445678999999999987533322211 1234689999998876543 4688999999999999987664
No 62
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=91.43 E-value=0.49 Score=50.53 Aligned_cols=70 Identities=29% Similarity=0.267 Sum_probs=50.1
Q ss_pred HHHHHhhcCCEEEEEccCcccccc---ccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa---~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++|||+|+||+.+.-... .... ....++++|.||.++.... ...++.|.||+..+|.+|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGID--YWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccc--cCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 345678899999999999852211 1111 1234678999998876543 24688999999999999998875
No 63
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=91.39 E-value=0.43 Score=51.11 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=48.6
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++|||+|+||+++... .+ ..+.++|.||.++..... ..++.|.||+..++++|.+.|+
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 3456778999999999987422 11 123578999988876543 4689999999999999998875
No 64
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.53 E-value=0.49 Score=48.73 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=48.4
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+ ++|++|++|+.+.-.....+ ....++++|.|+.++...+. ..++.|.||+..+++.|.+.+.
T Consensus 270 ~~~~-~aDlvl~lG~~~~~~~~~~~---~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 270 REEL-QPDLVIRFGGPPVSKRLRQW---LARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhC-CCCEEEEeCCCcchhHHHHH---HhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 3445 89999999999754433322 11235789999998877653 4589999999999999887764
No 65
>PRK07064 hypothetical protein; Provisional
Probab=90.45 E-value=0.53 Score=49.61 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=49.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+|||+|+||+++.-....... .....++|.||.++...+ ...++.|.+++..+|++|.+.+.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998755443221 112347889988876543 34688999999999999988764
No 66
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.27 E-value=0.59 Score=49.98 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=47.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+.+.+++|||+|++||++.... +... ...+..+|.||.++.... ...++.|.||+..+|.+|...|.-
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~---~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAE---VSKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEP 327 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCccc---cccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc
Confidence 34567789999999999874222 2111 123445588888776543 345789999999999999887753
No 67
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=89.75 E-value=0.56 Score=47.91 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=49.4
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+|.|.+|-|.+++-...+ +.-..||-||.++. |.-..+|+.|-||+-+++|+|.+.+.
T Consensus 294 P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 294 PELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 5899999999998887776 22345888999976 66688999999999999999999865
No 68
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=89.54 E-value=0.62 Score=46.74 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+|.|.+|-|.+++-...+ +.-..+|-||.+|. |.-+.+|+.|-||+-+++|+|.+.+.
T Consensus 253 P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 253 PELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred ccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 5799999999998877766 22345888999975 56688999999999999999998864
No 69
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=89.54 E-value=0.75 Score=49.01 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=47.7
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+++||++|++|+++... .+ .....++|.||.++....+ ..++.|.+|+..++.+|.+.+.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 446778999999999987532 11 1234689999998865433 4589999999999999987664
No 70
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=89.27 E-value=0.65 Score=46.58 Aligned_cols=59 Identities=32% Similarity=0.344 Sum_probs=48.2
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+|.|.+|-|.+++-...+ +.-..||-||.+|. |.-+.+|+.|-||.-+++|+|.+.+.
T Consensus 252 P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 252 SDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred ccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 5789999999888877666 22346888999976 56688999999999999999998763
No 71
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=88.96 E-value=0.81 Score=46.01 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=49.9
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.||.|.+|-|.+++-.+.+ +.-..+|-||.++. |.=+.||+.|-||.-+++|+|.+.|+
T Consensus 252 P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 252 PKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred ccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 6899999999999888776 22346788999975 56688999999999999999999875
No 72
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=87.31 E-value=1.1 Score=47.74 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=50.1
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+++.-........ ...+.++|.||.++.... ...++.|.+|+..+|.+|.+.++
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAY--FAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 35567789999999999986443322211 123467888998876433 24578999999999999988765
No 73
>PLN02573 pyruvate decarboxylase
Probab=86.59 E-value=1.2 Score=47.88 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+||+++.-........ ...+.++|.||.++.......++.+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 34567789999999999986544332211 12456799999988765443344433 58888888888764
No 74
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=86.45 E-value=1 Score=47.76 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=50.7
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC--C-CCceEEEeccHHHHHHHHHHHhccC
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--D-KKASLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d-~~adl~I~g~~devL~~L~~~L~~~ 177 (375)
.++++||++|++|+-|.-.--..++- .-.+..++|.||.-+..+ . -..++.|.||+..++.+|.+.|+-.
T Consensus 272 ~ALk~ADvvll~GarlnwiLhfG~~P-k~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~ 344 (571)
T KOG1185|consen 272 LALKKADVVLLAGARLNWILHFGLPP-KWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQ 344 (571)
T ss_pred HHHhhCCEEEEecceeeEEEecCCCC-ccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcCC
Confidence 35678999999999987333333321 124677888887765443 2 3678999999999999999999753
No 75
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.33 E-value=1.3 Score=46.82 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=48.5
Q ss_pred hHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC-CCceEEEeccHHHHHHHHHHHhc
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d-~~adl~I~g~~devL~~L~~~L~ 175 (375)
..+.+.+++||++|++|+++.-+........ ...+.++|.||.++.... ...++.|.+++..++++|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 3455677899999999997422211111101 123567889998876432 23568889999999999998875
No 76
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=84.88 E-value=2 Score=45.61 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHH
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAG 169 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~ 169 (375)
.+.+.+++||++|++||++.... + ...+.++|.||.++.... ...++.|.+++..+|..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 35567789999999999975322 1 123568999999886654 34689999999999954
No 77
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=84.82 E-value=0.8 Score=48.49 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=45.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|+||++|.-.......... ..+++|-||.++..... ..++.| +|+..+|.+|.+.++
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~--~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQL--TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccC--CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 4556788999999999998644332221111 12467888887654322 235556 899999999988774
No 78
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.90 E-value=2.3 Score=44.19 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHhhcCCEEEEEccCcccc-c-cccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQIT-P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~-P-a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
...+.+||++|++|+-.... | .......++++|+++|+||+..+.....+|.+|.
T Consensus 165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 34678999999999975543 1 1122234678999999999999998888888774
No 79
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=83.62 E-value=2.6 Score=44.81 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=54.1
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc-cCCC
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN-LRIP 179 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~-~~iP 179 (375)
|-..+.+|||+|-|||.++=.-..+-.. ....+.+++.||.++-..-+.-.+-+.+|+...|.+|...|+ ++-+
T Consensus 289 AN~~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~ 363 (617)
T COG3962 289 ANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTA 363 (617)
T ss_pred HHhhhhhcCEEEEecccccccccccHHH-hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccc
Confidence 3445578999999999988554444322 345778899999988765455557788999999999988874 4443
No 80
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=82.83 E-value=1.4 Score=46.27 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred HHHhhcCCEEEEEccCccc-cc-cccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQI-TP-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~P-a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+.+||++|++|+-... .| .......++++|+++|.|++..+.....||++|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 3567899999999987654 23 2233345778999999999999998888888774
No 81
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.27 E-value=2.1 Score=44.44 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHhhcCCEEEEEccCcccc-c--cccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-P--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-P--a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... | .......++++|+++|+|++..+.....+|.+|.
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 4567999999999976543 2 1222234667899999999999988888888775
No 82
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=81.67 E-value=1.8 Score=46.31 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHhhcCCEEEEEccCcccc-c-cccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQIT-P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~-P-a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
...+.+||++|++|+..... | .......++++|+++|+|++..+.....+|.+|.
T Consensus 154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 34567999999999976543 2 2222335678999999999999988788888764
No 83
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=80.15 E-value=0.94 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.599 Sum_probs=21.7
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
+..+|..||+.|...... .. .....|| .||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~---~~-~~~~~CP--~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI---SD-DPLATCP--ECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEec---CC-CCCCCCC--CCCCcce
Confidence 456899999977533211 11 3456799 8998654
No 84
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.90 E-value=3.6 Score=42.97 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=40.0
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.++|++|++|+-.... |. ......++++|+++|.|++..+.....+|++|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 4567999999999975433 21 122234668899999999999988778888875
No 85
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=78.83 E-value=3.2 Score=44.07 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHH
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAG 169 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~ 169 (375)
+.+.+++||++|+||+++.-.....+ ......++|.||.++...+. ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 34567899999999999843322111 11223488999998876643 4578999999999876
No 86
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=77.63 E-value=5.2 Score=39.93 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHHhhcCCEEEEEccCccc-ccc-ccchHhhh-cCCCeEEEECCCCCCCCCCceEEEeccHH-HHHHHHHH
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPA-CNLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIHGFVD-KVVAGVMD 172 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~-~~G~~lIiINlq~t~~d~~adl~I~g~~d-evL~~L~~ 172 (375)
...+.++|++|++|+-+.. .|. ......+. ++|+++|.|++..+.. .+|..+.-..+ ..+..|++
T Consensus 143 ~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~ 211 (386)
T cd02768 143 IAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLD 211 (386)
T ss_pred HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHH
Confidence 3566799999999997643 332 12223343 4599999999998887 67877765444 33333333
No 87
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.55 E-value=4.2 Score=43.92 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=31.0
Q ss_pred HHHhhcCCEEEEEccCccc-ccc-ccchHhhhcCCCeEEEECCCCC
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKT 149 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~~~G~~lIiINlq~t 149 (375)
.+.+.+||++|++|+-... .|. ......++++|+++|.||+-.+
T Consensus 158 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 158 LEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 3467789999999996432 221 1222457789999999999765
No 88
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=76.64 E-value=1.9 Score=48.02 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=48.4
Q ss_pred HHHhhcCCEEEEEccCcc-cccc-ccchHhhhc-CCCeEEEECCCCCCCCCCceEEEeccHHH---HHHHHHHH
Q 017188 106 EKHCKIADVVLCLGTSLQ-ITPA-CNLPLKCLR-GGGKIVIVNLQKTPKDKKASLVIHGFVDK---VVAGVMDL 173 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~-V~Pa-~~Lp~~a~~-~G~~lIiINlq~t~~d~~adl~I~g~~de---vL~~L~~~ 173 (375)
.+.+..+||+|+||+.-+ -.|+ +.....|.+ +|.++|++.+.++.....||++|+-..+. +|..+++.
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~Avaky 488 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTAVAKY 488 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHHHHHH
Confidence 457789999999998644 3343 233345555 99999999999999988999998754433 44444443
No 89
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.35 E-value=4.2 Score=42.09 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=39.3
Q ss_pred HhhcCCEEEEEccCcccc---ccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT---PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~---Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-.... |.......++++|+++|.|++..+.....||.+|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 457899999999975543 21222234667899999999999988788888764
No 90
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=76.01 E-value=2.6 Score=47.86 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHhhcCCEEEEEccCcccc--ccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~--Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
...+.+||++|++|+-.... +.......++++|+++|.|++..+.....||++|.
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlp 275 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLP 275 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecC
Confidence 34567899999999975433 23344445778999999999999988788887764
No 91
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=75.50 E-value=5.2 Score=44.23 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHhhcCCEEEEEccCccc--cccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V--~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+.... .|+..-...++++|+++|.||+..+.....+|.+|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 467899999999985332 233222234667899999999999988778888764
No 92
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.28 E-value=4.4 Score=42.91 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=39.1
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcC--CCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~--G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... |. ......++++ |+++|+|++..+.....+|.+|.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 4567999999999976533 21 1222345555 99999999999988777888764
No 93
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=75.19 E-value=4 Score=44.10 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=39.2
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... |. ......++++|+++|.|++..+.....+|.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 4678899999999965432 21 122234667999999999999887777777663
No 94
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.04 E-value=1.6 Score=30.96 Aligned_cols=32 Identities=25% Similarity=0.614 Sum_probs=21.0
Q ss_pred ccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 47 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 47 l~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
++..+|..||..+..-. .+.. .....|| .||+
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP--~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE-DDPVPCP--ECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC-CCCCcCC--CCCC
Confidence 35678999998764321 2222 3456798 8998
No 95
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=72.88 E-value=8.6 Score=40.67 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=57.4
Q ss_pred cccEEEcCCCCCccc---hhHHHHHhhcCCEEEEEccCccccccccc---------hHhhhcCCCeEEEECCCCCC-C--
Q 017188 87 RDTVLDWEDALPPKE---MNPAEKHCKIADVVLCLGTSLQITPACNL---------PLKCLRGGGKIVIVNLQKTP-K-- 151 (375)
Q Consensus 87 RP~VVlFGE~lP~~~---~~~A~~~i~~aDLlLVLGTSL~V~Pa~~L---------p~~a~~~G~~lIiINlq~t~-~-- 151 (375)
+-||++=+-.+|-+. ++++-..+.++|+.||+|..=.|.|+++- |-.-..+-..+|++++.-.+ +
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence 458999888888653 44455567789999999999999998753 21111112234455544222 1
Q ss_pred ------CCCceEEEeccHHHHHHHHHHH
Q 017188 152 ------DKKASLVIHGFVDKVVAGVMDL 173 (375)
Q Consensus 152 ------d~~adl~I~g~~devL~~L~~~ 173 (375)
-...+..+.||+.+.+.+|.+.
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKA 461 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHh
Confidence 1334567889999999998765
No 96
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.76 E-value=5.9 Score=41.92 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHhhcCCEEEEEccCccccc-cc-------cchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQITP-AC-------NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~P-a~-------~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-..... .. .....++++|+++|+|++..+.....||+.|.
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 45688999999998655432 11 12234678899999999999988778888774
No 97
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.42 E-value=4.6 Score=43.59 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHhhcCCEEEEEccCcccccc-----ccchHhhhcCCCeEEEECCCCCCCCC-CceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQITPA-----CNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa-----~~Lp~~a~~~G~~lIiINlq~t~~d~-~adl~I~ 160 (375)
..+.+||++|+.|+-....-. ......++++|+++|+|++..+.... .||++|.
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ 221 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP 221 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence 466789999999996543321 12334567799999999999988764 6887764
No 98
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=72.06 E-value=4.3 Score=45.01 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=38.1
Q ss_pred hhcCCEEEEEccCcccc----------ccccchHhhhcCCCeEEEECCCCCCCCCCc-eEEEe
Q 017188 109 CKIADVVLCLGTSLQIT----------PACNLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVIH 160 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~----------Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~a-dl~I~ 160 (375)
+.+||++|+.|+...+. +.......++++|+++|+|++..|..-..+ |++|.
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~ 227 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIP 227 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeC
Confidence 67899999999975542 222333456789999999999999876654 66653
No 99
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=71.06 E-value=4.5 Score=42.84 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=54.2
Q ss_pred cccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCccccccccc---------hHhhhcCCCeEEEECCCCCC-C--
Q 017188 87 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACNL---------PLKCLRGGGKIVIVNLQKTP-K-- 151 (375)
Q Consensus 87 RP~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~L---------p~~a~~~G~~lIiINlq~t~-~-- 151 (375)
+-||++=+-.+|-+ +++++-..++++|+.||+|..=.|.|+++- |-.-..+-..+|++++.-.+ +
T Consensus 355 HMNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyag 434 (463)
T PF02233_consen 355 HMNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAG 434 (463)
T ss_dssp HHHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS
T ss_pred cceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCC
Confidence 45788777777865 355666678999999999999888887643 32212233456777765332 1
Q ss_pred ------CCCceEEEeccHHHHHHHHHHHh
Q 017188 152 ------DKKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 152 ------d~~adl~I~g~~devL~~L~~~L 174 (375)
.+..+..+.||+.+.+.+|.+.|
T Consensus 435 v~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 435 VDNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp -S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 23456788999999999998764
No 100
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=70.86 E-value=4.2 Score=40.05 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.3
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... |. ......++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~ 207 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLP 207 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeC
Confidence 4567899999999865433 22 122234566899999999999887666777653
No 101
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.49 E-value=8.1 Score=43.20 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHhhcCCEEEEEccCcccc--c-cccchHhhhcCCCeEEEECCCCCCCCCCceEEEec
Q 017188 106 EKHCKIADVVLCLGTSLQIT--P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~--P-a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g 161 (375)
...+.+||++|++|+-.... | .......++++|+++|+|++..+.....+|.+|.-
T Consensus 168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpi 226 (760)
T cd02760 168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPI 226 (760)
T ss_pred cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCc
Confidence 34668999999999986432 2 12222346678999999999999988888988743
No 102
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=68.68 E-value=8.1 Score=42.68 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=39.6
Q ss_pred HhhcCCEEEEEccCccc-cccc--cchHhhh-cCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQI-TPAC--NLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V-~Pa~--~Lp~~a~-~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-... .|.. +....++ ++|+++|.|++..+.....+|++|.
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~ 249 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHA 249 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeec
Confidence 45789999999987654 3432 2223455 7899999999999988888888774
No 103
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.45 E-value=7.8 Score=41.09 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=38.5
Q ss_pred HhhcCCEEEEEccCcccc--ccc--cchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT--PAC--NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~--Pa~--~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+..... +.. .-...++++|+++|+|++..+.....+|.+|.
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~ 215 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLP 215 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeC
Confidence 568999999999875432 211 11223567899999999999887777888874
No 104
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.75 E-value=6.5 Score=43.25 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=39.1
Q ss_pred HHhhcCCEEEEEccCccc-cccc-cchHhhhcC-CCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRG-GGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V-~Pa~-~Lp~~a~~~-G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+++||++|++|+-... .|.. .....++++ |+++|+|++..|.....||+.|.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 457889999999987653 3421 222345555 99999999999987777887663
No 105
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=67.56 E-value=6.7 Score=32.70 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=44.6
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~d 164 (375)
.+.+-|++|++.-|....-.......++++|+++|.| +....+..+.+|+.|.....
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVE 101 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCCC
Confidence 4567799999999988777777788889999998877 44556777788888876543
No 106
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=67.54 E-value=7.3 Score=45.03 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... |. ......++++|+++|.||+..+.....||+.|.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 4567899999999865432 32 122345778999999999999888788888764
No 107
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=67.29 E-value=10 Score=42.26 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCC
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTP 150 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~ 150 (375)
+.+.+||++|++|+-.... |. ......++++|+++|+||+-.+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 4677899999999864322 21 11223577899999999996643
No 108
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=67.28 E-value=6.1 Score=41.99 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=42.8
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHh
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L 174 (375)
.+.+.+++|||+|++|+++.-+....-. ....+.++|.|+.++..... ..++.| +++.+.|.+|++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~--~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQ--RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCccccccccccc--ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 4556778999999999998644221110 11124578888877654332 345666 56777777776654
No 109
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=66.14 E-value=4 Score=36.77 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=20.4
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...+|.+||+...... ....|.|| +||+.
T Consensus 111 G~l~C~~Cg~~~~~~~-------~~~l~~Cp--~C~~~ 139 (146)
T PF07295_consen 111 GTLVCENCGHEVELTH-------PERLPPCP--KCGHT 139 (146)
T ss_pred ceEecccCCCEEEecC-------CCcCCCCC--CCCCC
Confidence 5689999999754331 23468899 89874
No 110
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=65.18 E-value=3.8 Score=27.91 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=21.4
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
...|+.|+..|..+.. .+.......+|+ .||..+
T Consensus 2 ~~~CP~C~~~~~v~~~--~~~~~~~~v~C~--~C~~~~ 35 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDS--QLGANGGKVRCG--KCGHVW 35 (38)
T ss_pred EEECCCCCCEEEeCHH--HcCCCCCEEECC--CCCCEE
Confidence 3679999998765422 222222245798 899765
No 111
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=65.05 E-value=3.4 Score=29.95 Aligned_cols=31 Identities=19% Similarity=0.593 Sum_probs=19.7
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
+..+|.+||..|..... +.. +....|| .||+
T Consensus 4 Yey~C~~Cg~~fe~~~~---~~~-~~~~~CP--~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQK---MSD-DPLATCP--ECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEEe---cCC-CCCCCCC--CCCC
Confidence 45689999997753211 111 2345798 8997
No 112
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=64.87 E-value=13 Score=38.45 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=56.2
Q ss_pred cccEEEcCCCCCccc--hhHHHHHh--hcCCEEEEEccCccccccccchHhhh--cCCCeEEEECCCCCCCCCCceEEEe
Q 017188 87 RDTVLDWEDALPPKE--MNPAEKHC--KIADVVLCLGTSLQITPACNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 87 RP~VVlFGE~lP~~~--~~~A~~~i--~~aDLlLVLGTSL~V~Pa~~Lp~~a~--~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|.-+.|-+.+|... -..+.+.+ +++|..||||+- |.++||..+. -...|+|.|++-+++....+|++|.
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sD----p~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP 381 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASD----PGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIP 381 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecC----ccccChHHHHHHhhcCCEEEecCCCCcchhhcceecc
Confidence 688899988887542 12344555 468999999985 6788887653 3578999999999999888999987
Q ss_pred ccHH
Q 017188 161 GFVD 164 (375)
Q Consensus 161 g~~d 164 (375)
+-++
T Consensus 382 ~aI~ 385 (429)
T COG1029 382 SAID 385 (429)
T ss_pred ccee
Confidence 6554
No 113
>PRK09939 putative oxidoreductase; Provisional
Probab=64.84 E-value=8 Score=43.30 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=30.4
Q ss_pred HHhhcCCEEEEEccCccc-ccc-ccchHhhhcCCCeEEEECCCCC
Q 017188 107 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKT 149 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~~~G~~lIiINlq~t 149 (375)
+.+.+||++|++|+-... .|. ......++++|+++|+||+-.+
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 467899999999986443 232 1112346788999999999664
No 114
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=64.64 E-value=4.3 Score=40.83 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=37.5
Q ss_pred HHHHhhcCCEEEEEccCcccccc---ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 105 AEKHCKIADVVLCLGTSLQITPA---CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa---~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
....+.+||++|++|+....... ..+...++++|+++|.|++..+.....+|..|.
T Consensus 105 ~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~ 163 (432)
T PF00384_consen 105 PLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIP 163 (432)
T ss_dssp HHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEE
T ss_pred ccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhcccccc
Confidence 34578899999999997553322 233345678899999999999876667777654
No 115
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=64.52 E-value=7.8 Score=43.44 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=36.7
Q ss_pred HHHhhcCCEEEEEccCccc-cccc--cchHhhhcCCCeEEEECCCCCCC-CCCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPAC--NLPLKCLRGGGKIVIVNLQKTPK-DKKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa~--~Lp~~a~~~G~~lIiINlq~t~~-d~~adl~I~ 160 (375)
.+.++++|++|++|+-... .|.. .+...++++|+++|.||+..+.. .+.+|.++.
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 3466789999999997654 3422 22222356899999999988763 344555553
No 116
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=62.53 E-value=4.8 Score=28.76 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=19.6
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...+|.+||.++..+... ...+|| .||+.
T Consensus 2 ~~y~C~~CG~~~~~~~~~-------~~~~Cp--~CG~~ 30 (46)
T PRK00398 2 AEYKCARCGREVELDEYG-------TGVRCP--YCGYR 30 (46)
T ss_pred CEEECCCCCCEEEECCCC-------CceECC--CCCCe
Confidence 357899999977554211 135798 89974
No 117
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.47 E-value=18 Score=38.92 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=37.9
Q ss_pred Hhh-cCCEEEEEccCcccc-ccc---------cchHhhhcCCCeEEEECCCCCCCCC-CceEEEe
Q 017188 108 HCK-IADVVLCLGTSLQIT-PAC---------NLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIH 160 (375)
Q Consensus 108 ~i~-~aDLlLVLGTSL~V~-Pa~---------~Lp~~a~~~G~~lIiINlq~t~~d~-~adl~I~ 160 (375)
.+. +||++|+.|+..... |.. .....++++|+++|+|++..+.... .||++|.
T Consensus 165 D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 165 DIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred hHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 444 599999999865432 211 2233567889999999999988775 6888764
No 118
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.23 E-value=19 Score=36.19 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=35.9
Q ss_pred Hh-hcCCEEEEEccCcccc-ccc--cchHh-------hhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HC-KIADVVLCLGTSLQIT-PAC--NLPLK-------CLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i-~~aDLlLVLGTSL~V~-Pa~--~Lp~~-------a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+ ++||++|++|+-.... |.. ++... +.++|+++|.|++..+.....+|.+|.
T Consensus 127 di~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 127 EVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred HHHhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 44 4799999999875543 221 11011 124788999999999888777887764
No 119
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=60.94 E-value=11 Score=42.11 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHhhcCCEEEEEccCcccc-c-c----ccchHhhh-cCCCeEEEECCCCCCCC---CCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-P-A----CNLPLKCL-RGGGKIVIVNLQKTPKD---KKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-P-a----~~Lp~~a~-~~G~~lIiINlq~t~~d---~~adl~I~ 160 (375)
..+.+||++|++|+..... | . ..|. .++ ++|+++|+|++..|... ..+|++|.
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~-~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLA-EARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHH-HHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 4668899999999986533 2 2 2232 344 47899999999998876 77888874
No 120
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=60.88 E-value=10 Score=40.90 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHhhcCCEEEEEccCccc-cccc-cchHhhhcCC-CeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRGG-GKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V-~Pa~-~Lp~~a~~~G-~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-... .|.. .....+.++| +++|.||+..+.....+|.++.
T Consensus 358 ~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~ 414 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLV 414 (603)
T ss_pred HHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhcccee
Confidence 456789999999987543 2321 1122344444 8999999999888777887664
No 121
>PRK11032 hypothetical protein; Provisional
Probab=60.82 E-value=5.7 Score=36.37 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=20.2
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
..+.|.+||+..... ....+|.|| +||+.
T Consensus 123 G~LvC~~Cg~~~~~~-------~p~~i~pCp--~C~~~ 151 (160)
T PRK11032 123 GNLVCEKCHHHLAFY-------TPEVLPLCP--KCGHD 151 (160)
T ss_pred ceEEecCCCCEEEec-------CCCcCCCCC--CCCCC
Confidence 457999999975332 123468899 89863
No 122
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=60.44 E-value=14 Score=39.92 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=36.7
Q ss_pred HhhcCCEEEEEccCcccc-----------ccccchHhhhcCCCeEEEECCCCCCCCCCce-EEE
Q 017188 108 HCKIADVVLCLGTSLQIT-----------PACNLPLKCLRGGGKIVIVNLQKTPKDKKAS-LVI 159 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~-----------Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~ad-l~I 159 (375)
.+.+||++|+.|+-.... +.......++++|+++|+|++..|..-..+| ++|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l 230 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWI 230 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEe
Confidence 468999999999865432 1112233567899999999999998766664 443
No 123
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=60.19 E-value=10 Score=37.74 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=45.5
Q ss_pred CEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 113 DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 113 DLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.|.|.+|-|..|+-.+.| +-..-++-||.+|. |.=.-||+.|.||.=+++|+|.++|+
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 588889999888877766 12234677999875 44467899999999999999998875
No 124
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=59.72 E-value=1.5 Score=39.75 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHc----CCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCC
Q 017188 4 MTHMALVELEKA----GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD 79 (375)
Q Consensus 4 ~aH~aLa~Lek~----G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~ 79 (375)
.+|+.+-..-.. |+....+-|.||||--..-.+ -.+--.-|+.+..+|. |+..|.+.-........+ .-+|-
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~-~YrC~- 144 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGE-VYRCG- 144 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhcccccccc-eEEec-
Confidence 366665554432 556667889999987665432 2344556788999999 999876543333322222 56898
Q ss_pred cCCCcccc
Q 017188 80 LKCGAKLR 87 (375)
Q Consensus 80 ~~CgG~LR 87 (375)
.|+|.|.
T Consensus 145 -~C~gkL~ 151 (156)
T COG3091 145 -KCGGKLV 151 (156)
T ss_pred -cCCceEE
Confidence 8999764
No 125
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=59.24 E-value=13 Score=43.72 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=41.3
Q ss_pred HhhcCCEEEEEccCcccc--ccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~--Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+++++|+.|+..... |.+.+...++.+|+++|.|.+..+.....+|.+|.
T Consensus 242 D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLp 296 (1235)
T TIGR01580 242 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLA 296 (1235)
T ss_pred hhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeC
Confidence 345899999999985433 44444456788999999999999988788888764
No 126
>PRK06260 threonine synthase; Validated
Probab=57.94 E-value=6.2 Score=40.38 Aligned_cols=30 Identities=33% Similarity=0.702 Sum_probs=20.7
Q ss_pred ccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 47 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 47 l~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
|...+|..||++|+.+. ....|| .||+.|.
T Consensus 1 ~~~~~C~~cg~~~~~~~---------~~~~Cp--~cg~~l~ 30 (397)
T PRK06260 1 MYWLKCIECGKEYDPDE---------IIYTCP--ECGGLLE 30 (397)
T ss_pred CCEEEECCCCCCCCCCC---------ccccCC--CCCCeEE
Confidence 45689999999985431 235798 7987643
No 127
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=57.70 E-value=6.9 Score=36.17 Aligned_cols=36 Identities=31% Similarity=0.671 Sum_probs=26.2
Q ss_pred CCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccc
Q 017188 45 GNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 88 (375)
Q Consensus 45 Gnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP 88 (375)
.+-....|+.|+..|..+.... ..-.|| .||+.|..
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~------~~F~Cp--~Cg~~L~~ 148 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME------YGFRCP--QCGEMLEE 148 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh------cCCcCC--CCCCCCee
Confidence 3335678999999998764432 246899 89998866
No 128
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=57.42 E-value=16 Score=36.94 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHhhcCCEEEEEccCccc-ccc-ccchHhhhcCCCeEEEECCCCCC
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTP 150 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~~~G~~lIiINlq~t~ 150 (375)
...+.+||++|++|+.... .|. ......++++|+++|.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 4567889999999997532 231 12223466789999999997654
No 129
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=57.39 E-value=19 Score=36.06 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHhhcCCEEEEEccCccc-ccccc--chHhhhcCCCeEEEECCCCCCCCCCceE
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPACN--LPLKCLRGGGKIVIVNLQKTPKDKKASL 157 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa~~--Lp~~a~~~G~~lIiINlq~t~~d~~adl 157 (375)
...+.+||++|++|+-... .|... +....+++|++++.|++..+.....+++
T Consensus 140 ~~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~ 194 (375)
T cd02773 140 IAGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL 194 (375)
T ss_pred HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC
Confidence 3457899999999997643 24322 2222345689999999887654444443
No 130
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=57.09 E-value=11 Score=31.69 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=43.4
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~d 164 (375)
.+.+-|++|++-.|....-.......++++|+++|.| |....+....+|+.|.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 3456799999988887777667777788899998766 55566777778888876666
No 131
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=56.64 E-value=6.9 Score=35.38 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=25.7
Q ss_pred ecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 43 LHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 43 LHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
-..+-....|+.|+..|..+..+. ..-.|| .||+.|
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~eA~~------~~F~Cp--~Cg~~L 138 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNEAME------LNFTCP--RCGAML 138 (158)
T ss_pred hccCCCeEECCCCCcEeeHHHHHH------cCCcCC--CCCCEe
Confidence 344445678999999998765443 246899 899884
No 132
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=56.55 E-value=21 Score=32.92 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=38.0
Q ss_pred hcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe-ccHHHHHHHHHHH
Q 017188 110 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH-GFVDKVVAGVMDL 173 (375)
Q Consensus 110 ~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~-g~~devL~~L~~~ 173 (375)
.++||+|.+|+. +|..+......++-+++..|.+.... ...||+.+- -+-++.++.|.+.
T Consensus 107 ~~~DlvlfvG~~---~~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l~~l 167 (171)
T PRK00945 107 GNYDLVIFIGVT---YYYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYLDEL 167 (171)
T ss_pred CCcCEEEEecCC---chhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHHHHH
Confidence 589999999999 56666555555555556666666544 455677652 2455666655443
No 133
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=56.25 E-value=15 Score=40.72 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=38.3
Q ss_pred HHhhcCCEEEEEccCcccc-c----c-ccchHhhhcCCCeEEEECCCCCCCC-CCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-P----A-CNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-P----a-~~Lp~~a~~~G~~lIiINlq~t~~d-~~adl~I~ 160 (375)
..+.+||++|++|+..... | . ..+...++++|+++|.|++..+... ..||.+|.
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 4668899999999976543 2 1 1222223468999999999988754 46888764
No 134
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=54.98 E-value=16 Score=40.77 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHhhcCCEEEEEccCcccc-cc----ccchHhhh-cCCCeEEEECCCCCCCC-CCceEEEe
Q 017188 106 EKHCKIADVVLCLGTSLQIT-PA----CNLPLKCL-RGGGKIVIVNLQKTPKD-KKASLVIH 160 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~-Pa----~~Lp~~a~-~~G~~lIiINlq~t~~d-~~adl~I~ 160 (375)
...+.+||++|++|+-.... |. ......++ ++|+++|.|++..+... ..||.+|.
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ 287 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIP 287 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEEC
Confidence 34567899999999976543 21 11222344 57999999999988875 46888764
No 135
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=54.64 E-value=16 Score=37.92 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=57.8
Q ss_pred cccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc--------chHhhhcCCCeEEEECCCC--CC---
Q 017188 87 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN--------LPLKCLRGGGKIVIVNLQK--TP--- 150 (375)
Q Consensus 87 RP~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~--------Lp~~a~~~G~~lIiINlq~--t~--- 150 (375)
+-||++-+-.+|-+ ++++.-+...++|++||||.-=.|.|++. +|-. .-.+++.+++++.. +.
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiL-eV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVL-EVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCcee-eeeccceEEEEeccccccccc
Confidence 55888877778754 35566667789999999999888888764 3311 11234445555442 11
Q ss_pred CC-----CCceEEEeccHHHHHHHHHHHh
Q 017188 151 KD-----KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 151 ~d-----~~adl~I~g~~devL~~L~~~L 174 (375)
.| +..+..+.||+.+..+++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 12 3346788899999999998754
No 136
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.94 E-value=32 Score=36.67 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=13.1
Q ss_pred hhHHHHHhhcCCEEEEEccCc
Q 017188 102 MNPAEKHCKIADVVLCLGTSL 122 (375)
Q Consensus 102 ~~~A~~~i~~aDLlLVLGTSL 122 (375)
++.+.+.+.+-+.=|+|||.+
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQM 321 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcc
Confidence 355556665555556688875
No 137
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=53.81 E-value=17 Score=40.89 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHhhcCCEEEEEccCcccc-cc--ccchHh-hhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA--CNLPLK-CLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa--~~Lp~~-a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.+||++|++|+-.... |. ..+... .+++|+++|+|++..+.....+|++|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 4567899999999975432 22 122211 124799999999988887667777664
No 138
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.25 E-value=7.4 Score=34.55 Aligned_cols=37 Identities=24% Similarity=0.628 Sum_probs=23.3
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 88 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP 88 (375)
...|+.|+..|........... ..--.|| .||+.|..
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~-~~~f~Cp--~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDM-DGTFTCP--RCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCC-CCcEECC--CCCCEEEE
Confidence 5789999999876533221111 1125798 89987643
No 139
>PRK12496 hypothetical protein; Provisional
Probab=52.71 E-value=6.5 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.807 Sum_probs=19.5
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
..+|..|++.|+.+. ..-.|| .||..++
T Consensus 127 ~~~C~gC~~~~~~~~---------~~~~C~--~CG~~~~ 154 (164)
T PRK12496 127 RKVCKGCKKKYPEDY---------PDDVCE--ICGSPVK 154 (164)
T ss_pred eEECCCCCccccCCC---------CCCcCC--CCCChhh
Confidence 467999999885431 113598 8998764
No 140
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=52.39 E-value=45 Score=32.53 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=50.3
Q ss_pred cccceEEeeeccCCCCccccceeeeeecCCccccccccccCCCceeEeeeecccceeEEEEEeecCCCCCCcceeeeee
Q 017188 201 FVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPF 279 (375)
Q Consensus 201 ~~~w~l~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 279 (375)
.-.|++-+.+.. ......+++.|.-+.-+...----++..|||.++ |+.. +.|.|.++.-|.|--++..+.+.|.+
T Consensus 36 th~w~v~v~~~~-~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~-EtGw-geF~i~i~i~f~d~~~~~~v~~~~~l 111 (249)
T KOG3149|consen 36 THIWEVYVRGPG-KEDISAFVDKVVFKLHESFPNPRRVVESPPFEIT-ETGW-GEFEIQIEIFFTDDANEKKVTLYHDL 111 (249)
T ss_pred ceeeEEEecCcC-ccccceeeeeeeeecccccccccccccCCCceEE-eecc-ccceEEEEEEeccCCCCceeeeeeeE
Confidence 345777665532 2236777777776544333332348899999999 4444 89999999999987666666655443
No 141
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=52.18 E-value=24 Score=37.22 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=37.0
Q ss_pred HhhcCCEEEEEccCcccc---ccc--cchHhhhcCC-----CeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT---PAC--NLPLKCLRGG-----GKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~---Pa~--~Lp~~a~~~G-----~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-.... |.. +....++++| .++|.|++..+.....+|.+|.
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ 255 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLA 255 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceec
Confidence 557899999999976544 211 1112234444 4999999999988888888774
No 142
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=50.87 E-value=8.5 Score=26.62 Aligned_cols=30 Identities=33% Similarity=0.917 Sum_probs=19.7
Q ss_pred cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 50 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 50 ~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
..|..||+.|...+.-. ...-.|. .||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~pP-----~~~~~Cd--~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP-----KVEGVCD--NCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBCT--TTTEBE
T ss_pred cCcCCCCCccccccCCC-----CCCCccC--CCCCee
Confidence 46999999986554211 1234798 899865
No 143
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=49.46 E-value=14 Score=40.93 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=38.2
Q ss_pred HHhhcCCEEEEEccCccc-ccccc----chHhhhcCCCeEEEECCCCCCCCCCceEEE
Q 017188 107 KHCKIADVVLCLGTSLQI-TPACN----LPLKCLRGGGKIVIVNLQKTPKDKKASLVI 159 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V-~Pa~~----Lp~~a~~~G~~lIiINlq~t~~d~~adl~I 159 (375)
..++.||++|++|+.... .|... ....+++.|+++|.|++..+.....+|+.|
T Consensus 195 ~D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l 252 (765)
T COG0243 195 PDIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWL 252 (765)
T ss_pred hhHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCcc
Confidence 348999999999998776 55433 222335677899999999987666666544
No 144
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=48.52 E-value=19 Score=29.87 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=41.5
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
+.+-|++|++-.|..-.-.......++++|+++|.| |...++..+.+|..|.-.+
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 567899999988887676666677788899999866 5555666677777776544
No 145
>PRK13937 phosphoheptose isomerase; Provisional
Probab=48.40 E-value=22 Score=32.55 Aligned_cols=56 Identities=13% Similarity=-0.042 Sum_probs=43.8
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
.+.+-|++|++-.|....-.......++++|+++|.| +...++....+|+.|.-..
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 4467799999998888777777777889999999888 6566777778888876443
No 146
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.30 E-value=16 Score=32.69 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=43.9
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~d 164 (375)
.+.+-|++|++.-|........+...++++|+++|.| +....+..+.+|+.|.....
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~ 126 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAA 126 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCc
Confidence 4567899999998888777777777889999999888 55667777778877765443
No 147
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.01 E-value=12 Score=25.69 Aligned_cols=33 Identities=42% Similarity=0.770 Sum_probs=21.2
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...|.+|+..|..+.. .+..+...-+|+ .|+..
T Consensus 2 ~i~Cp~C~~~y~i~d~--~ip~~g~~v~C~--~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDE--KIPPKGRKVRCS--KCGHV 34 (36)
T ss_pred EEECCCCCCEEeCCHH--HCCCCCcEEECC--CCCCE
Confidence 3679999999876532 232233334798 89864
No 148
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.95 E-value=13 Score=31.91 Aligned_cols=31 Identities=32% Similarity=0.951 Sum_probs=21.2
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 89 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~ 89 (375)
+-.|.+||..|.- ++..+-.|| .||....|.
T Consensus 9 KR~Cp~CG~kFYD--------Lnk~PivCP--~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD--------LNKDPIVCP--KCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc--------CCCCCccCC--CCCCccCcc
Confidence 4579999987621 222344699 999887776
No 149
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=47.21 E-value=27 Score=31.20 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=43.5
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
.+.+-|++|++-.|....-.-.....++++|+++|.| |....+..+.+|+.|.-.
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4567899999998888777777777889999999888 666777778888877643
No 150
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=46.51 E-value=19 Score=32.29 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=44.2
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVDK 165 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~de 165 (375)
.+.+-|++|++.-|....-...+...+++.|+++|.| +....+..+.+|+.|.-..++
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 4567899999999888777777777888999999777 445667777788877655544
No 151
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=45.88 E-value=9.2 Score=33.98 Aligned_cols=26 Identities=27% Similarity=0.758 Sum_probs=17.6
Q ss_pred ccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 51 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 51 ~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
+|++||+.|..... ....=|| .|||.
T Consensus 3 ~Ct~Cg~~f~dgs~-------eil~GCP--~CGg~ 28 (131)
T PF09845_consen 3 QCTKCGRVFEDGSK-------EILSGCP--ECGGN 28 (131)
T ss_pred ccCcCCCCcCCCcH-------HHHccCc--ccCCc
Confidence 79999999865421 1223498 89975
No 152
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=45.60 E-value=24 Score=28.98 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=41.5
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~d 164 (375)
.+..-|++|++-.+........+...++++|++++.| +...++....+|..|.-...
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 3466789999998887666666667788899999776 44556666777777765444
No 153
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=45.33 E-value=79 Score=33.41 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=55.2
Q ss_pred cEEEcCCCCCccchhHHHHHh--hcCCEEEEEccCccccccccchHhhhc--CCCeEEEECCCCCCCC-------CCceE
Q 017188 89 TVLDWEDALPPKEMNPAEKHC--KIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKD-------KKASL 157 (375)
Q Consensus 89 ~VVlFGE~lP~~~~~~A~~~i--~~aDLlLVLGTSL~V~Pa~~Lp~~a~~--~G~~lIiINlq~t~~d-------~~adl 157 (375)
+|.+++........+...+.+ ...|++.+-.++.+.+.+..+...+++ .++++|+=...+|... ...|.
T Consensus 39 ~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~ 118 (497)
T TIGR02026 39 DVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDF 118 (497)
T ss_pred ceEEecccccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccE
Confidence 355555443322223333333 358988776666555556566554443 4788877777766531 24799
Q ss_pred EEeccHHHHHHHHHHHhc
Q 017188 158 VIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 158 ~I~g~~devL~~L~~~L~ 175 (375)
++.|..++.+.+|++.|.
T Consensus 119 Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 119 IVRGEGEETVVKLIAALE 136 (497)
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 999999999999998764
No 154
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=44.81 E-value=45 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=40.0
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEe
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIH 160 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~ 160 (375)
+.+-|++|++-.|....-.......++++|+++|.| +....+..+.+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 466799999999988776667777788999999888 4455666677887765
No 155
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=43.38 E-value=37 Score=34.05 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=35.5
Q ss_pred Hhh-cCCEEEEEccCcccc-cc--ccc-------hHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCK-IADVVLCLGTSLQIT-PA--CNL-------PLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~-~aDLlLVLGTSL~V~-Pa--~~L-------p~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+. +||++|++|+-.... |. .++ .....++|++++.|++..+.....+|.+|.
T Consensus 133 di~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 133 EVKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred HHhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 443 699999999875432 21 111 011126788999999999887777887764
No 156
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=43.38 E-value=26 Score=39.49 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=36.8
Q ss_pred HHhhcCCEEEEEccCcccc-cc--ccchHhhh--cCCCeEEEECCCCCCCCCCceEEEe
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA--CNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa--~~Lp~~a~--~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
..+.++|++|++|+-.... |. ..+. .++ ++|+++|+|++..+.....+|++|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~-~a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVT-DRRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHH-HHHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 4567899999999975532 21 1222 223 4699999999988877667776654
No 157
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=43.29 E-value=38 Score=41.29 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=42.6
Q ss_pred HhhcCCEEEEEccCccc-cccccchHhhhcCCCeEEEECCCCCCCC--CCceEEEeccHHHHHHHHHH
Q 017188 108 HCKIADVVLCLGTSLQI-TPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMD 172 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V-~Pa~~Lp~~a~~~G~~lIiINlq~t~~d--~~adl~I~g~~devL~~L~~ 172 (375)
.+.++|++|++|+.+.- .....+.. . .. ..+|.|+.++...+ ...++.|.+++..++..|.+
T Consensus 595 ~~~~aDlVl~iG~rl~s~~~t~~~~~-~-~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 595 NWIQFDVVIQIGSRITSKRVSQMLEK-C-FP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred ccCCCCEEEEeCCccccHHHHHHHHh-C-CC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 35689999999999852 22211111 1 11 35889999888765 34578899999999988765
No 158
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.60 E-value=15 Score=22.85 Aligned_cols=23 Identities=43% Similarity=1.097 Sum_probs=14.6
Q ss_pred ccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 51 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 51 ~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
.|.+||.+...+ ..-|+ .||..|
T Consensus 1 ~Cp~CG~~~~~~-----------~~fC~--~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----------AKFCP--NCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-----------Ccchh--hhCCcC
Confidence 488898875322 23587 788653
No 159
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.16 E-value=29 Score=32.41 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=40.9
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
.+.+-|++|++-.|....-.-.....++++|+++|.| +....+..+.+|+.|.-..
T Consensus 110 ~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 3456799999988877666666667788999999887 4455566677887775433
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.15 E-value=19 Score=31.98 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=21.2
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 89 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~ 89 (375)
+-.|++||+.|.- ++..+..|| .||....|.
T Consensus 9 Kr~Cp~cg~kFYD--------Lnk~p~vcP--~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD--------LNRRPAVSP--YTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc--------cCCCCccCC--CcCCccCcc
Confidence 4579999987621 233456899 899775554
No 161
>PRK04940 hypothetical protein; Provisional
Probab=42.03 E-value=16 Score=33.97 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=39.2
Q ss_pred cccEEEc--CCCCCccchhHHHHHhhc----C--CEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC
Q 017188 87 RDTVLDW--EDALPPKEMNPAEKHCKI----A--DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK 151 (375)
Q Consensus 87 RP~VVlF--GE~lP~~~~~~A~~~i~~----a--DLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~ 151 (375)
.|++.+. ....|.+.+..+.+.+.+ . +=+++|||||-=+-|..| +.+.|.+-|+||+--.+.
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~L---a~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERI---GFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHH---HHHHCCCEEEECCCCChH
Confidence 5676654 222344445544444431 1 346789999986666655 456789999999987664
No 162
>PRK07591 threonine synthase; Validated
Probab=41.99 E-value=15 Score=38.12 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=20.8
Q ss_pred ccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 47 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 47 l~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
+...+|..||++|+.+. . ..|| .|||.|.
T Consensus 16 ~~~l~C~~Cg~~~~~~~---------~-~~C~--~cg~~l~ 44 (421)
T PRK07591 16 AVALKCRECGAEYPLGP---------I-HVCE--ECFGPLE 44 (421)
T ss_pred eeEEEeCCCCCcCCCCC---------C-ccCC--CCCCeEE
Confidence 44589999999986431 2 5798 7988654
No 163
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=41.13 E-value=17 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.624 Sum_probs=21.0
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
..+|++|+..|..+.. .+......-+|+ .|+..
T Consensus 2 ~i~CP~C~~~f~v~~~--~l~~~~~~vrC~--~C~~~ 34 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDD--KLPAGGRKVRCP--KCGHV 34 (37)
T ss_pred EEECCCCCceEEcCHH--HcccCCcEEECC--CCCcE
Confidence 3689999998865532 232233345798 89854
No 164
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=41.12 E-value=15 Score=31.48 Aligned_cols=27 Identities=30% Similarity=0.737 Sum_probs=17.2
Q ss_pred cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 50 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 50 ~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
-+|++||+.|+.... . ...-|| +||+.
T Consensus 3 H~CtrCG~vf~~g~~--~-----il~GCp--~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGSE--E-----ILSGCP--KCGCN 29 (112)
T ss_pred ceecccccccccccH--H-----HHccCc--cccch
Confidence 379999999875411 1 123487 78753
No 165
>PRK07586 hypothetical protein; Validated
Probab=40.87 E-value=87 Score=32.88 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=16.3
Q ss_pred hHHHHHhhcCCEEEEEccCc
Q 017188 103 NPAEKHCKIADVVLCLGTSL 122 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL 122 (375)
..+.+.+++|||+|+||+++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 34556788999999999985
No 166
>PRK12474 hypothetical protein; Provisional
Probab=40.86 E-value=90 Score=32.94 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchH---hhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPL---KCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~---~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++|||+|+||+.+... ...... .......+++.++. ..+++..++..|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l~ 320 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAVD 320 (518)
T ss_pred HHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhcc
Confidence 3446788999999999986321 000000 00112344554432 12688889988887664
No 167
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=40.84 E-value=55 Score=27.55 Aligned_cols=66 Identities=17% Similarity=0.061 Sum_probs=37.5
Q ss_pred hcCCEEEEEccCccccccccchHhhhcC--CCeEEEECCCCCC------CCCCceEEEeccHHHHHHHHHHHhc
Q 017188 110 KIADVVLCLGTSLQITPACNLPLKCLRG--GGKIVIVNLQKTP------KDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 110 ~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~--G~~lIiINlq~t~------~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.|++.+=..+.+...+..+....++. +.++++-....+. ....+|.++.|..+..+.+|++.+.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 3566665543333333333333333332 2444443433331 2345789999999999999998875
No 168
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=40.55 E-value=17 Score=23.10 Aligned_cols=25 Identities=48% Similarity=1.014 Sum_probs=16.6
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
...|.+||.....+ ...|+ .||..|
T Consensus 2 ~~~Cp~Cg~~~~~~-----------~~fC~--~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPD-----------AKFCP--NCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcc-----------cccCh--hhCCCC
Confidence 35799999854222 34688 898754
No 169
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=40.50 E-value=29 Score=33.87 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
...+..-|++|++.-|....-.-.....++++|+++|.| +...++..+.+|+.+....
T Consensus 172 ~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 172 LALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred HHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 345567899999998887666666677789999999988 5557888888888877633
No 170
>PRK15482 transcriptional regulator MurR; Provisional
Probab=40.44 E-value=29 Score=33.52 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC-CCCCCCCCCceEEEeccHHH
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFVDK 165 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN-lq~t~~d~~adl~I~g~~de 165 (375)
..+.+-|++|++.-|........+...++++|+++|.|- ....+....+|+.|.-..++
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 237 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGE 237 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCc
Confidence 345677999999999887777777778899999998884 45566777788887654443
No 171
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=40.18 E-value=52 Score=35.62 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=48.7
Q ss_pred EcCCCCCcc--------chhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe-cc
Q 017188 92 DWEDALPPK--------EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH-GF 162 (375)
Q Consensus 92 lFGE~lP~~--------~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~-g~ 162 (375)
+|+|..|.. --....+.++.||++|++|+-|.=+-...+... .+-.++|.++........ -.+. =.
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~--~~~~~~i~~~~~~v~I~~---~~f~~l~ 323 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQ--YKPANIIEIHPDSVKIKD---AVFTNLS 323 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeee--cCcccEEEeccCeeEecc---cccCCee
Confidence 567776643 134566788999999999998876665555432 233567778777654321 1111 24
Q ss_pred HHHHHHHHHHHh
Q 017188 163 VDKVVAGVMDLL 174 (375)
Q Consensus 163 ~devL~~L~~~L 174 (375)
...+|++|.+.+
T Consensus 324 m~~~L~~L~~~i 335 (557)
T COG3961 324 MKDALQELAKKI 335 (557)
T ss_pred HHHHHHHHHHHh
Confidence 567777776655
No 172
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.03 E-value=11 Score=28.06 Aligned_cols=28 Identities=32% Similarity=0.693 Sum_probs=18.7
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...|..||+++..+. ....-+|| .||..
T Consensus 6 ~Y~C~~Cg~~~~~~~-------~~~~irCp--~Cg~r 33 (49)
T COG1996 6 EYKCARCGREVELDQ-------ETRGIRCP--YCGSR 33 (49)
T ss_pred EEEhhhcCCeeehhh-------ccCceeCC--CCCcE
Confidence 467999999873221 12345898 89974
No 173
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.52 E-value=32 Score=32.93 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECC-CCCCCCCCceEEEecc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGF 162 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINl-q~t~~d~~adl~I~g~ 162 (375)
+...+.+-|++|++.-|............++++|+++|.|=- ...+....+|+.|...
T Consensus 169 ~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 169 TVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 344567889999998887666556666778999999988844 4566667788887643
No 174
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=39.35 E-value=96 Score=32.37 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=49.7
Q ss_pred hHHHHHhhcCCEEEEEccCccccccccchHhhhc--CCCeEEEECCCCCCCC-------CCceEEEeccHHHHHHHHHH
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKD-------KKASLVIHGFVDKVVAGVMD 172 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~--~G~~lIiINlq~t~~d-------~~adl~I~g~~devL~~L~~ 172 (375)
+...+...+.|++.+-.++.+...+..+....++ .++++|+--...|... ...|.++.|..+..+.+|++
T Consensus 60 ~~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~ 138 (472)
T TIGR03471 60 DDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAE 138 (472)
T ss_pred HHHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHc
Confidence 3444456678998887777777777777665554 4677877777766532 24689999999999888764
No 175
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=39.23 E-value=55 Score=37.25 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHhhcCCEEEEEccCcc-ccccccc-hHhh-hcCCCeEEEECCCCCCC-CC--CceEEE--e-ccHHHHHHHHHHHh
Q 017188 106 EKHCKIADVVLCLGTSLQ-ITPACNL-PLKC-LRGGGKIVIVNLQKTPK-DK--KASLVI--H-GFVDKVVAGVMDLL 174 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~-V~Pa~~L-p~~a-~~~G~~lIiINlq~t~~-d~--~adl~I--~-g~~devL~~L~~~L 174 (375)
.+.+.+||++|++|+-+. -.|.... ...| +++|+++|+|++-.+.. .. .+++.+ . |.=..++-.|++.+
T Consensus 365 l~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~i 442 (819)
T PRK08493 365 LEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKF 442 (819)
T ss_pred HHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHH
Confidence 345678999999999654 3453322 2334 35899999999887654 22 234555 2 33333444555544
No 176
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=38.91 E-value=72 Score=30.77 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=47.0
Q ss_pred ceEEeeeccCC--CCccccceeeeeecCCccccccccccCCCceeEeeeecccceeEEEEEeecCCCCCCccee
Q 017188 204 WTLRITSVHGQ--TAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQI 275 (375)
Q Consensus 204 w~l~~~~~~~~--~~~~~~l~~~~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 275 (375)
|.+-+.-++++ ..+..+++.|.-..-+...-.--.+..|||.+. |+. =+.|+|.|+.-|-++.|+-...-
T Consensus 35 th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~-EtG-WGEF~i~I~iff~~~age~~~~f 106 (225)
T COG5033 35 THIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIK-ETG-WGEFDIQIKIFFAEKAGEKTIHF 106 (225)
T ss_pred hEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEE-ecc-cccceEEEEEEEecCCCceEeeh
Confidence 55554444444 456889998876543332222236779999997 333 48999999999999988765543
No 177
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=38.87 E-value=52 Score=36.67 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHhhcCCEEEEEccCccc-ccc-ccchHhhhcCCCeEEEECCCCCCC
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPK 151 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~~~G~~lIiINlq~t~~ 151 (375)
...+.+||++|++|+-... .|. ......++++|+++|+|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4566789999999997542 232 222234667899999999987753
No 178
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=38.75 E-value=33 Score=30.48 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=42.7
Q ss_pred hhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCC-----CCCceE---EEeccHHHHHHHHHH
Q 017188 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK-----DKKASL---VIHGFVDKVVAGVMD 172 (375)
Q Consensus 102 ~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~-----d~~adl---~I~g~~devL~~L~~ 172 (375)
...+.+.+..||++|+-|||+.=-....+...++ ++..++++=+.-.-. +...+. .+--+.+.++..|.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCT
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHc
Confidence 3456778899999999999998766666655444 577888876653322 211121 123567776665543
No 179
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=38.60 E-value=18 Score=37.32 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=19.1
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
..+|..||++|+ +. ....|| .|+|.|.
T Consensus 2 ~l~C~~Cg~~~~-~~---------~~~~C~--~c~g~l~ 28 (398)
T TIGR03844 2 TLRCPGCGEVLP-DH---------YTLSCP--LDCGLLR 28 (398)
T ss_pred EEEeCCCCCccC-Cc---------cccCCC--CCCCceE
Confidence 578999999985 21 125798 7887654
No 180
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.17 E-value=24 Score=23.63 Aligned_cols=24 Identities=38% Similarity=0.808 Sum_probs=16.8
Q ss_pred cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 50 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 50 ~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
.+|..||..|..+. ....|| .||.
T Consensus 2 ~~C~~CGy~y~~~~---------~~~~CP--~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE---------APWVCP--VCGA 25 (33)
T ss_pred EECCCCCCEECCCc---------CCCcCc--CCCC
Confidence 47999999874321 234798 8985
No 181
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=37.46 E-value=33 Score=35.79 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=52.5
Q ss_pred CCCCcc--chhHHHH----HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC------CceEEEecc
Q 017188 95 DALPPK--EMNPAEK----HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK------KASLVIHGF 162 (375)
Q Consensus 95 E~lP~~--~~~~A~~----~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~------~adl~I~g~ 162 (375)
.+||+- ...+|++ ++++||++|.|.|-|.-.-..+|.- ...+++.|...|....+ ...+.|-.+
T Consensus 317 GPLPdvitDv~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTd 392 (407)
T TIGR00300 317 GPLPDVITDVVRAQSKMRELLQGADMVLMLSTMLHSIAVGNLLP----SGVKTICVDINPAVVTKLSDRGSSQAVGVVTD 392 (407)
T ss_pred CCCCcchhhHHHHHHHHHHHhccCCeehhHHHHHHHHhhccccc----ccceEEEEECCHHHhhhhhccCceeEEEEEec
Confidence 467763 2334444 4568999999999988666666532 22377777777755432 234678899
Q ss_pred HHHHHHHHHHHhc
Q 017188 163 VDKVVAGVMDLLN 175 (375)
Q Consensus 163 ~devL~~L~~~L~ 175 (375)
+..+++.|.+.|.
T Consensus 393 vg~Fl~~L~~~l~ 405 (407)
T TIGR00300 393 VGLFLPLLVRQIK 405 (407)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 182
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=37.19 E-value=53 Score=30.30 Aligned_cols=55 Identities=16% Similarity=0.026 Sum_probs=41.3
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
..+-|++|++-.|....-.......++++|+++|.| +....+..+.+|+.|.-..
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 356799999999988777767777788999999887 4455666667787775443
No 183
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=36.45 E-value=9.6 Score=38.88 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=30.7
Q ss_pred EecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccccEE
Q 017188 42 ELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 91 (375)
Q Consensus 42 ELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~VV 91 (375)
-.-|-++..-|..|...|..+... ..--+|| +|||.++-.|.
T Consensus 239 P~LGKY~~TAC~rC~t~y~le~A~------~~~wrCp--kCGg~ikKGV~ 280 (403)
T COG1379 239 PRLGKYHLTACSRCYTRYSLEEAK------SLRWRCP--KCGGKIKKGVS 280 (403)
T ss_pred ccccchhHHHHHHhhhccCcchhh------hhcccCc--ccccchhhhHH
Confidence 345888889999999998765322 1234799 89998887664
No 184
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.24 E-value=63 Score=26.61 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEec--CCccccccCCCCCcccc
Q 017188 3 GMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFR 61 (375)
Q Consensus 3 N~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELH--Gnl~~~~C~~C~~~y~~ 61 (375)
+..++.|..|++.|.+..+-+.| | ...+++. ..-....|.+||+.+..
T Consensus 36 ~TVYR~L~~L~~~Gli~~~~~~~--~---------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 36 ATVYRTLELLEEAGLVREIELGD--G---------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCC--C---------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 34678999999999887764433 1 1234432 22346899999997654
No 185
>PRK05580 primosome assembly protein PriA; Validated
Probab=36.22 E-value=62 Score=35.77 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=12.5
Q ss_pred hhHHHHHhhcCCEEEEEccCc
Q 017188 102 MNPAEKHCKIADVVLCLGTSL 122 (375)
Q Consensus 102 ~~~A~~~i~~aDLlLVLGTSL 122 (375)
.+.+.+.+.+-+.=|+|||.+
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~ 489 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQM 489 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChh
Confidence 455555665545555688875
No 186
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=35.75 E-value=20 Score=41.17 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=36.0
Q ss_pred EecCCccc-----cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhc
Q 017188 42 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 111 (375)
Q Consensus 42 ELHGnl~~-----~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~ 111 (375)
.|-||+.. .+|++|+..|-+- +..-+|+ +|||.+-++|- ..++- +-++.+.+.+++
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~---------PL~G~C~--kCGg~lilTV~--~GsV~-KYl~~s~~la~~ 1060 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRI---------PLVGKCL--KCGNNLTLTVS--KGSVM-KYLELSKFLAEN 1060 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccC---------CCCCccc--ccCCeEEEEEe--cchhH-hhHHHHHHHHHH
Confidence 45598863 7899999988543 2345798 89998888774 33332 224445544443
No 187
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=35.40 E-value=67 Score=29.37 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHh---hcCCEEEEEccCccccccccchHhhhc--CCCeEEEECCCCCCCCCCceEEE-eccHHHHHHHHHHH
Q 017188 105 AEKHC---KIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKDKKASLVI-HGFVDKVVAGVMDL 173 (375)
Q Consensus 105 A~~~i---~~aDLlLVLGTSL~V~Pa~~Lp~~a~~--~G~~lIiINlq~t~~d~~adl~I-~g~~devL~~L~~~ 173 (375)
+.+.+ .++||+|.+|+.. +..+......+ ...+.|-|+ +-. ...||+.+ +-.-++++..|.+.
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~---y~~~~~ls~lk~f~~~~~i~l~--~~y-~pnA~~Sf~n~~~~~~~~~l~~~ 159 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY---YYLSQMLSSLKHFSHIVTIAID--KYY-QPNADYSFPNLSKDEYLDYLRKL 159 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc---hHHHHHHHHHHhhcCcEEEEec--CCC-CCCCceeccccCHHHHHHHHHHH
Confidence 34555 6899999999996 33332222222 245555555 322 45567765 23456666666443
No 188
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.81 E-value=39 Score=28.31 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEec--CCccccccCCCCCcccch
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFRD 62 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELH--Gnl~~~~C~~C~~~y~~d 62 (375)
..++.|..|++.|.+..+.+. |+ ...+++. ..-....|..||+.+..+
T Consensus 44 TVYR~L~~L~e~Gli~~~~~~--~~---------~~~Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 44 TVYRTLDLLEEAGLIRKIEFG--DG---------ESRYELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp HHHHHHHHHHHTTSEEEEEET--TS---------EEEEEESSSSSCEEEEETTTS-EEEE-
T ss_pred HHHHHHHHHHHCCeEEEEEcC--CC---------cceEeecCCCcceEEEECCCCCEEEec
Confidence 357899999999988776544 22 2345553 445568999999976543
No 189
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=34.65 E-value=38 Score=25.09 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=27.9
Q ss_pred CeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 39 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 39 kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
-|..+.|. .|..|+-..+.... ..+...+....|| .||-.|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~-~~i~~~~~i~~Cp--~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQEL-NEIRKGDEIVFCP--NCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHH-HHHHcCCCeEECc--CCCccC
Confidence 47888876 89999987765533 2332334567899 898654
No 190
>PRK06450 threonine synthase; Validated
Probab=33.66 E-value=25 Score=35.47 Aligned_cols=26 Identities=38% Similarity=0.779 Sum_probs=16.1
Q ss_pred cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 50 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 50 ~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
.+|..||++|... ...+|| .|||.|.
T Consensus 4 ~~C~~Cg~~~~~~----------~~~~C~--~cg~~l~ 29 (338)
T PRK06450 4 EVCMKCGKERESI----------YEIRCK--KCGGPFE 29 (338)
T ss_pred eEECCcCCcCCCc----------ccccCC--cCCCEeE
Confidence 6788888877321 124677 6876543
No 191
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.15 E-value=25 Score=30.20 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=23.1
Q ss_pred eEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 40 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 40 ViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
-+++.=--...+|..||..+..+. ....+|| .||+.
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~~~--------~~~~~CP--~Cgs~ 97 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKPNA--------LDYGVCE--KCHSK 97 (117)
T ss_pred EEEEEecCCEEEhhhCCCccccCC--------ccCCcCc--CCCCC
Confidence 455555556789999997664321 1124699 89975
No 192
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.95 E-value=20 Score=29.59 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=41.1
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC-CCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN-lq~t~~d~~adl~I~g~~d 164 (375)
.+.+-|++|++-.|..-.........+++.|+++|.|= ....+....+|..|.-..+
T Consensus 50 ~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~ 107 (131)
T PF01380_consen 50 NLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTG 107 (131)
T ss_dssp GCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESS
T ss_pred cccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCC
Confidence 44566899999988887777777778889999998874 4455555666766654443
No 193
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.71 E-value=24 Score=40.79 Aligned_cols=56 Identities=32% Similarity=0.548 Sum_probs=36.0
Q ss_pred EecCCccc-----cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhc
Q 017188 42 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 111 (375)
Q Consensus 42 ELHGnl~~-----~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~ 111 (375)
.|-||+.. .+|++|+..|-+- +..-+|+ .|||.+-++|- ..++- +-++.+...+++
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~---------PL~G~C~--kCGg~lilTVh--~GsV~-KYl~~s~~la~~ 1085 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRP---------PLSGKCP--KCGGNLILTVH--KGSVE-KYLEVSKKLAEE 1085 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccC---------CCCCcCc--cCCCeEEEEEe--cchHH-HHHHHHHHHHHH
Confidence 45599864 7899999998553 2345798 89999988874 33322 224444444443
No 194
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=31.71 E-value=58 Score=31.41 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=41.0
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
..+.+-|++|++--|....-...+...|+.+|+++|.| +...++....+|+.|.-.
T Consensus 183 ~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 239 (292)
T PRK11337 183 ALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICST 239 (292)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcC
Confidence 34567899999988877666666677788999999888 444556666777777543
No 195
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=31.70 E-value=2.9e+02 Score=26.78 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC---CCCCceEEEeccHHHHHHHHHHHhc
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~---~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+..||++|.- |. -.++..-+..|...|.++|..+..... .+....+.+.++.+++...|.+.+.
T Consensus 294 ~~~l~~ad~~l~~--s~-~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~ 363 (392)
T cd03805 294 ELLLSSARALLYT--PS-NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAN 363 (392)
T ss_pred HHHHhhCeEEEEC--CC-cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHh
Confidence 3456778987762 32 233333345677899999988765432 2334566777788777777766654
No 196
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=31.46 E-value=54 Score=32.91 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC-CC---CCCCceEEEec---cHHHHHHHHHHHh
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK-TP---KDKKASLVIHG---FVDKVVAGVMDLL 174 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~-t~---~d~~adl~I~g---~~devL~~L~~~L 174 (375)
+.+.+||++||+|+.-. .-..+|...|++.|.+-++|+-.. -. +.....+.|-. ..+.+..++.++|
T Consensus 208 ~la~~~Dl~iVVG~~nS-SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 208 ELAPEVDLVIVVGSKNS-SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHhhcCCEEEEECCCCC-ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 44568999999997522 445678788889999888886532 22 22334455543 3455666666554
No 197
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.05 E-value=19 Score=29.28 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=27.5
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc-----cccEEEcCCC
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL-----RDTVLDWEDA 96 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L-----RP~VVlFGE~ 96 (375)
+...|..|+..++. +..+.. +..-.|+ .|++.| ++.|+|=|-.
T Consensus 11 Y~Y~c~~cg~~~dv---vq~~~d-dplt~ce--~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 11 YSYECTECGNRFDV---VQAMTD-DPLTTCE--ECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred eEEeecccchHHHH---HHhccc-CccccCh--hhChHHHHhhccceEEEecce
Confidence 45789999987642 333422 2234688 899865 4777766543
No 198
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=31.00 E-value=68 Score=30.25 Aligned_cols=55 Identities=22% Similarity=0.107 Sum_probs=42.4
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
.+.+-|++|++-.|....-.......|+++|+++|.| |...++....+|+.|.-.
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~~ 99 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIK 99 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEcC
Confidence 4567799999998888777777777889999998776 556677777788877543
No 199
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.90 E-value=27 Score=41.37 Aligned_cols=56 Identities=30% Similarity=0.523 Sum_probs=36.2
Q ss_pred EecCCccc-----cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhc
Q 017188 42 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKI 111 (375)
Q Consensus 42 ELHGnl~~-----~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~ 111 (375)
.|-||+.. .+|.+|+..|-+- +..-+|+ .|||.+-++|- ..++- +-++.|.+.+++
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~---------PL~G~C~--kCGg~iilTv~--~Gsv~-KYl~~a~~~~~~ 1301 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRM---------PLAGKCR--KCGGRIILTVH--EGSVE-KYLDTAKMVATE 1301 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccC---------CCCCccc--ccCCeEEEEEe--cchHH-HHHHHHHHHHHH
Confidence 45599864 7899999998543 2345798 89998888874 33332 224455544443
No 200
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.84 E-value=41 Score=22.81 Aligned_cols=26 Identities=35% Similarity=0.795 Sum_probs=17.3
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
..+|..||..+..+ ..+..|| .||..
T Consensus 2 ~~~C~~CG~i~~g~---------~~p~~CP--~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGE---------EAPEKCP--ICGAP 27 (34)
T ss_pred eEECCCCCCEeECC---------cCCCcCc--CCCCc
Confidence 36899999876432 1234798 89863
No 201
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=30.45 E-value=66 Score=30.68 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=41.3
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEec
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g 161 (375)
.+.+-|++|++..|............|+++|+++|.|=....+....+|+.|.-
T Consensus 172 ~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 172 NSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 446779999998888766666677778999999999965556666777877653
No 202
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.33 E-value=30 Score=24.94 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=17.6
Q ss_pred cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 50 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 50 ~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
..|..||.++..+ ....-+|| .||..
T Consensus 3 Y~C~~Cg~~~~~~--------~~~~irC~--~CG~r 28 (44)
T smart00659 3 YICGECGRENEIK--------SKDVVRCR--ECGYR 28 (44)
T ss_pred EECCCCCCEeecC--------CCCceECC--CCCce
Confidence 5799999976543 11235798 89974
No 203
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.11 E-value=80 Score=29.50 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=39.4
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCC---ceEEEecc
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIHGF 162 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~---adl~I~g~ 162 (375)
...+-|++|++-+|..-.........+++.|+++|.| +....+..+. +|+.|.=+
T Consensus 106 ~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip 164 (196)
T PRK10886 106 LGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcC
Confidence 3456799999999988777777777789999999887 4445555443 56665533
No 204
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.90 E-value=26 Score=29.86 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 40 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 40 ViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
-+++.=-=...+|..|++.|..+... -.|| .||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~---------~~CP--~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFD---------FSCP--RCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCC---------HH-S--SSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCCC---------CCCc--CCcCC
Confidence 45555555678999999988654211 2498 89976
No 205
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=29.82 E-value=33 Score=38.73 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHhhcCCEEEEEccCccc-ccc-ccchHhhhcCCCeEEEECCC
Q 017188 107 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQ 147 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V-~Pa-~~Lp~~a~~~G~~lIiINlq 147 (375)
..+.+||++|++|+-+.. .|. ......+.++|+++|.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999997654 332 22234566788888777764
No 206
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=29.18 E-value=1e+02 Score=25.22 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred cccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC--CCCCCCceEEEeccHH
Q 017188 87 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK--TPKDKKASLVIHGFVD 164 (375)
Q Consensus 87 RP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~--t~~d~~adl~I~g~~d 164 (375)
.++|.+.|-. ++..+.+..||+.|..-..-...|. .+ ..+...|.++|.-+... ..........+.++.+
T Consensus 52 ~~~v~~~g~~------~e~~~~l~~~dv~l~p~~~~~~~~~-k~-~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFV------EELPEILAAADVGLIPSRFNEGFPN-KL-LEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp HCTEEEE-S-------HHHHHHHHC-SEEEE-BSS-SCC-H-HH-HHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HH
T ss_pred CCCEEEcCCH------HHHHHHHHhCCEEEEEeeCCCcCcH-HH-HHHHHhCCCEEECCcchhhheeecCCeEEECCCHH
Confidence 5688877765 2345678889999874421111221 12 24566888887776621 1112334566678888
Q ss_pred HHHHHHHHHh
Q 017188 165 KVVAGVMDLL 174 (375)
Q Consensus 165 evL~~L~~~L 174 (375)
++...|.+.+
T Consensus 124 ~l~~~i~~l~ 133 (135)
T PF13692_consen 124 ELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877665
No 207
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=29.01 E-value=62 Score=33.04 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=30.7
Q ss_pred HHHHhhcCCEEEEEccCcccc-ccccc-hHhh-hcCCCeEEEECCCC
Q 017188 105 AEKHCKIADVVLCLGTSLQIT-PACNL-PLKC-LRGGGKIVIVNLQK 148 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~-Pa~~L-p~~a-~~~G~~lIiINlq~ 148 (375)
..+.+++||++|++|+-+... |.-.. .+.+ ++.|+++++|++..
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 456788999999999987643 43322 1223 35688999999876
No 208
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.82 E-value=1.3e+02 Score=33.36 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccc--hhh-h--hhhcccCcCCCCC
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFR--DFE-V--ETIGLKETSRRCS 78 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~--d~~-v--~~i~~~~~~P~Cp 78 (375)
....+|.+-.++| .-++--| |-|+ ..++-++-.=...+|.+|+-.... ... . ...+....+..||
T Consensus 357 ~l~~~i~~~L~~g--qvll~ln------RrGy--ap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp 426 (665)
T PRK14873 357 LAFRAARDALEHG--PVLVQVP------RRGY--VPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCP 426 (665)
T ss_pred HHHHHHHHHHhcC--cEEEEec------CCCC--CCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCC
Confidence 3445555545556 3344444 3444 246666666666667766643211 100 0 0011222346898
Q ss_pred CcCCCcc-ccc
Q 017188 79 DLKCGAK-LRD 88 (375)
Q Consensus 79 ~~~CgG~-LRP 88 (375)
.||+. +++
T Consensus 427 --~Cgs~~l~~ 435 (665)
T PRK14873 427 --RCGSDRLRA 435 (665)
T ss_pred --CCcCCccee
Confidence 89975 443
No 209
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=28.76 E-value=49 Score=37.19 Aligned_cols=51 Identities=4% Similarity=-0.042 Sum_probs=33.4
Q ss_pred hhcCCEEEEEccCccc----------cccccchHhhh---cC-CCeEEEECCCCCCCCCC-ceEEE
Q 017188 109 CKIADVVLCLGTSLQI----------TPACNLPLKCL---RG-GGKIVIVNLQKTPKDKK-ASLVI 159 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V----------~Pa~~Lp~~a~---~~-G~~lIiINlq~t~~d~~-adl~I 159 (375)
+.++|++|+.|+-... .|...+...++ ++ |+++|+|++..|..... +|.+|
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l 273 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHL 273 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEe
Confidence 5789999999997642 23322222222 23 48999999999886553 45554
No 210
>PF14353 CpXC: CpXC protein
Probab=28.34 E-value=27 Score=29.86 Aligned_cols=17 Identities=41% Similarity=0.987 Sum_probs=11.8
Q ss_pred cCCccccccCCCCCccc
Q 017188 44 HGNSFMEACPSCGSEYF 60 (375)
Q Consensus 44 HGnl~~~~C~~C~~~y~ 60 (375)
-|+++...|++||+.+.
T Consensus 33 ~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCcCEEECCCCCCcee
Confidence 57777777777777543
No 211
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.33 E-value=90 Score=27.33 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEec--CCccccccCCCCCcccc
Q 017188 3 GMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFR 61 (375)
Q Consensus 3 N~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELH--Gnl~~~~C~~C~~~y~~ 61 (375)
.-.++.|..|++.|.+..+-..| | ...+++. +.-....|..||+.+..
T Consensus 53 aTVYR~L~~L~e~Gli~~~~~~~--~---------~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 53 ATVYRVLNQFDDAGIVTRHNFEG--G---------KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCC--C---------cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 34678999999999887765544 1 1234432 11235889999997654
No 212
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=28.31 E-value=43 Score=33.92 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=40.0
Q ss_pred hcCCEEEEEcc--CccccccccchHhhhcCCCeEEEECCCCCCC--CCCceEEEeccHHHHHHHHHHHhc
Q 017188 110 KIADVVLCLGT--SLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 110 ~~aDLlLVLGT--SL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d~~adl~I~g~~devL~~L~~~L~ 175 (375)
+..-.+||+|- |....-..+|..+....+.+..+||++|... .-.+++-|+..++- .++|+..+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkY--kEvMkqY~ 84 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKY--KEVMKQYQ 84 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhH--HHHHHHhC
Confidence 34457888885 6666666777766677788888999998743 23344555544432 34444433
No 213
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=28.11 E-value=84 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=36.5
Q ss_pred HhhcCCEEEEEccCcccc--cccc---chHhhhcCC-CeEEEECCCCCCCC----CCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT--PACN---LPLKCLRGG-GKIVIVNLQKTPKD----KKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~--Pa~~---Lp~~a~~~G-~~lIiINlq~t~~d----~~adl~I~ 160 (375)
.+.+||++|++||+.... |+.. ....++.+| +++|+|++..|... ..+|.+|.
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlp 344 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLP 344 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeC
Confidence 567899999999986643 3322 123455565 79999999987743 45677764
No 214
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.10 E-value=37 Score=28.57 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=18.5
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
-.+|-+||.+|..+.. ..+.+|| .|.+
T Consensus 58 Pa~CkkCGfef~~~~i-------k~pSRCP--~CKS 84 (97)
T COG3357 58 PARCKKCGFEFRDDKI-------KKPSRCP--KCKS 84 (97)
T ss_pred ChhhcccCcccccccc-------CCcccCC--cchh
Confidence 4789999998755321 1345898 7875
No 215
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=26.93 E-value=29 Score=33.20 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=22.4
Q ss_pred EEcc--CccccccccchHhhhcCCCeEEEECCCCCCC--CCCceEEEec
Q 017188 117 CLGT--SLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHG 161 (375)
Q Consensus 117 VLGT--SL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~--d~~adl~I~g 161 (375)
|+|+ |....-+..+-......|.++++||++|..- +..+++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird 49 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRD 49 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHh
Confidence 3554 3334444555555567788999999999753 2345555555
No 216
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=26.13 E-value=76 Score=31.14 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=42.4
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
.+.+-|++|++-.|....-.......++..|+++|.| +....+..+.+|+.|...
T Consensus 91 ~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 91 MVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 4567799999998888777777777888899998877 445567777888877544
No 217
>PLN02275 transferase, transferring glycosyl groups
Probab=26.02 E-value=3e+02 Score=27.33 Aligned_cols=80 Identities=16% Similarity=0.008 Sum_probs=41.8
Q ss_pred ccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC---CCCCceEEEeccHH
Q 017188 88 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGFVD 164 (375)
Q Consensus 88 P~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~---~d~~adl~I~g~~d 164 (375)
.++++|+..+|. +...+.+..||++++.=+|..-..+-.-...|...|.|+|..|....+ .+....+.+. +.+
T Consensus 286 ~~v~~~~~~~~~---~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-~~~ 361 (371)
T PLN02275 286 RHVAFRTMWLEA---EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-SSS 361 (371)
T ss_pred CceEEEcCCCCH---HHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC-CHH
Confidence 346666665553 334467788999975322211011111123466789999988765433 1333445554 555
Q ss_pred HHHHHHH
Q 017188 165 KVVAGVM 171 (375)
Q Consensus 165 evL~~L~ 171 (375)
++.+.|.
T Consensus 362 ~la~~i~ 368 (371)
T PLN02275 362 ELADQLL 368 (371)
T ss_pred HHHHHHH
Confidence 4444443
No 218
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=25.97 E-value=3.6e+02 Score=25.11 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=47.2
Q ss_pred ccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC--CCCCceEEEe-cc
Q 017188 86 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--KDKKASLVIH-GF 162 (375)
Q Consensus 86 LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~--~d~~adl~I~-g~ 162 (375)
+.++|.+.|..+|.+ ...+.+..||+++.-... .-.++......|...|.|+|.-+..... .+....+.+. ++
T Consensus 245 ~~~~v~~~~~~~~~~---~~~~~~~~ad~~v~ps~~-e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d 320 (366)
T cd03822 245 LADRVIFINRYLPDE---ELPELFSAADVVVLPYRS-ADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGD 320 (366)
T ss_pred CCCcEEEecCcCCHH---HHHHHHhhcCEEEecccc-cccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCC
Confidence 345666666656543 345677889998753222 1012222233566789998877765421 1222334443 56
Q ss_pred HHHHHHHHHHHhc
Q 017188 163 VDKVVAGVMDLLN 175 (375)
Q Consensus 163 ~devL~~L~~~L~ 175 (375)
.+++...|.+.+.
T Consensus 321 ~~~~~~~l~~l~~ 333 (366)
T cd03822 321 PAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHHHHHc
Confidence 7777666665544
No 219
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.87 E-value=93 Score=28.71 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=40.4
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC-CCCCCCCC---CceEEEeccHHH
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDK---KASLVIHGFVDK 165 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN-lq~t~~d~---~adl~I~g~~de 165 (375)
..+-|++|++..|..-.-...+...++++|+++|.|= ....+..+ .+|+.|.-..++
T Consensus 109 ~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 109 GQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 3578999999999876666666677889999998874 34444444 477777654443
No 220
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=25.45 E-value=1.2e+02 Score=33.82 Aligned_cols=45 Identities=29% Similarity=0.373 Sum_probs=29.9
Q ss_pred HHHhhcCCEEEEEccCccc-ccccc-chHhhhcCCC-eEEEECCCCCC
Q 017188 106 EKHCKIADVVLCLGTSLQI-TPACN-LPLKCLRGGG-KIVIVNLQKTP 150 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V-~Pa~~-Lp~~a~~~G~-~lIiINlq~t~ 150 (375)
.+.+++||++|++|+.... .|... -...+.++|+ +++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4456889999999998643 33221 1233455664 99999987554
No 221
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=25.11 E-value=67 Score=36.12 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=30.7
Q ss_pred hhcCCEEEEEccCccc----------cccccchHhhh---cC-CCeEEEECCCCCCCCCC
Q 017188 109 CKIADVVLCLGTSLQI----------TPACNLPLKCL---RG-GGKIVIVNLQKTPKDKK 154 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V----------~Pa~~Lp~~a~---~~-G~~lIiINlq~t~~d~~ 154 (375)
+.+||++|+.|+-... .|...+...++ ++ |+++|+|++..|.....
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~ 270 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNY 270 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhh
Confidence 5789999999997542 23322222222 23 79999999998876543
No 222
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.85 E-value=43 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 41 AELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 41 iELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
++++=-=-..+|..|+..+.... ...-.|| .||+.
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~~~~--------~~~~~CP--~Cgs~ 96 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVTLLT--------QRVRRCP--QCHGD 96 (114)
T ss_pred EEEEeeCcEEEcccCCCeeecCC--------ccCCcCc--CcCCC
Confidence 33333334578999998764321 1113598 89975
No 223
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=24.85 E-value=69 Score=33.07 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.5
Q ss_pred HHhhcCCEEEEEccCccc
Q 017188 107 KHCKIADVVLCLGTSLQI 124 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V 124 (375)
..+.+||++|++|+-...
T Consensus 141 ~di~~ad~il~~G~n~~~ 158 (472)
T cd02771 141 RDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHhCCEEEEEeCCccc
Confidence 466799999999997553
No 224
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.57 E-value=76 Score=30.97 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=40.4
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEec
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 161 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g 161 (375)
.+.+-|++|++-.|............++++|+++|.| +....+..+.+|+.+.-
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3466799999988888777777777788899998887 44556666777777743
No 225
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=24.41 E-value=47 Score=28.40 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=21.7
Q ss_pred eEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 40 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 40 ViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
-++++=---..+|..|+..+..+. ..-.|| .||+.
T Consensus 61 ~L~I~~vp~~~~C~~Cg~~~~~~~---------~~~~CP--~Cgs~ 95 (113)
T PRK12380 61 DLHIVYKPAQAWCWDCSQVVEIHQ---------HDAQCP--HCHGE 95 (113)
T ss_pred EEEEEeeCcEEEcccCCCEEecCC---------cCccCc--CCCCC
Confidence 344444445688999998764431 112498 89965
No 226
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=23.91 E-value=3.2e+02 Score=27.59 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=42.6
Q ss_pred chhHHHHHhhcCCEEEEEcc-Ccc--ccccccchH----hhhcCCCeEEEECCCCCC--CCCCceEEEeccHHHHHHHHH
Q 017188 101 EMNPAEKHCKIADVVLCLGT-SLQ--ITPACNLPL----KCLRGGGKIVIVNLQKTP--KDKKASLVIHGFVDKVVAGVM 171 (375)
Q Consensus 101 ~~~~A~~~i~~aDLlLVLGT-SL~--V~Pa~~Lp~----~a~~~G~~lIiINlq~t~--~d~~adl~I~g~~devL~~L~ 171 (375)
....+.+++.+||+ ||+|- |+- |.|.--++. ....+..++++.|...-+ .+. -.+.+-+..|.
T Consensus 162 a~~~al~AI~~ADl-IvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt~g-------~~~~dhv~~i~ 233 (310)
T TIGR01826 162 ALREAVEAIREADL-IILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDG-------FSLEDHVDALH 233 (310)
T ss_pred CCHHHHHHHHhCCE-EEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCCCC-------CCHHHHHHHHH
Confidence 35778899999994 56663 433 333322222 123445567777884322 222 24677788888
Q ss_pred HHhccCCCCc
Q 017188 172 DLLNLRIPPY 181 (375)
Q Consensus 172 ~~L~~~iP~~ 181 (375)
+++|-.+..|
T Consensus 234 ~~~g~~~~D~ 243 (310)
T TIGR01826 234 RHLGKPFIDT 243 (310)
T ss_pred HHcCCCCCCE
Confidence 8887644443
No 227
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=23.44 E-value=3.6e+02 Score=27.36 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=44.3
Q ss_pred cEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC---CCCCceEEEeccHHH
Q 017188 89 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP---KDKKASLVIHGFVDK 165 (375)
Q Consensus 89 ~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~---~d~~adl~I~g~~de 165 (375)
++++|+..+|. +...+.+..||+++.+-.+..-..+-.-+..|...|.|+|.-|....+ .+....+.+ ++.++
T Consensus 295 ~~~~~~g~~~~---~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv-~d~~~ 370 (415)
T cd03816 295 KVTIRTPWLSA---EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF-GDSEE 370 (415)
T ss_pred cEEEEcCcCCH---HHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE-CCHHH
Confidence 45555444442 333456678998875322211011111123466789999887764322 133344555 57777
Q ss_pred HHHHHHHHhcc
Q 017188 166 VVAGVMDLLNL 176 (375)
Q Consensus 166 vL~~L~~~L~~ 176 (375)
+-..|.+.+..
T Consensus 371 la~~i~~ll~~ 381 (415)
T cd03816 371 LAEQLIDLLSN 381 (415)
T ss_pred HHHHHHHHHhc
Confidence 77777666554
No 228
>PRK08197 threonine synthase; Validated
Probab=23.13 E-value=44 Score=34.16 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=11.3
Q ss_pred cccccCCCCCcccch
Q 017188 48 FMEACPSCGSEYFRD 62 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d 62 (375)
...+|..||++|..+
T Consensus 6 ~~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 6 SHLECSKCGETYDAD 20 (394)
T ss_pred eEEEECCCCCCCCCC
Confidence 347899999988543
No 229
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.10 E-value=52 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.490 Sum_probs=20.9
Q ss_pred EEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 41 AELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 41 iELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
++++=---..+|..|+..|.... ..-.|| .||+.
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~~~~---------~~~~CP--~Cgs~ 95 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVSPEI---------DLYRCP--KCHGI 95 (115)
T ss_pred EEEEeeCcEEEcccCCCEEecCC---------cCccCc--CCcCC
Confidence 33333334588999998775431 123598 89975
No 230
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=22.89 E-value=45 Score=31.12 Aligned_cols=27 Identities=22% Similarity=0.612 Sum_probs=19.5
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcccc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 87 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LR 87 (375)
+..+|..|++.|+.+ .-.|| .||+.++
T Consensus 138 w~~rC~GC~~~f~~~-----------~~~Cp--~CG~~~~ 164 (177)
T COG1439 138 WRLRCHGCKRIFPEP-----------KDFCP--ICGSPLK 164 (177)
T ss_pred eeEEEecCceecCCC-----------CCcCC--CCCCceE
Confidence 357899999988511 23598 8999754
No 231
>PLN02569 threonine synthase
Probab=22.68 E-value=49 Score=35.21 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=18.6
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
..+|..||++|+.+. ...+|+ |||.|
T Consensus 49 ~l~C~~Cg~~y~~~~---------~~~~C~---cgg~l 74 (484)
T PLN02569 49 FLECPLTGEKYSLDE---------VVYRSK---SGGLL 74 (484)
T ss_pred ccEeCCCCCcCCCcc---------ccccCC---CCCeE
Confidence 589999999986542 235684 88765
No 232
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.56 E-value=46 Score=32.43 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=28.7
Q ss_pred CeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 39 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 39 kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
-|+.+-|+ .|..|+-..+..+.. .+..++.+..|| .||..|
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~~~~-~V~~~d~iv~CP--~CgRIL 231 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQTLS-KVRKKDEIVFCP--YCGRIL 231 (239)
T ss_pred eEEeecCC----cccCCeeeecHHHHH-HHhcCCCCccCC--ccchHH
Confidence 47888776 699999877665432 233356778999 899654
No 233
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.13 E-value=66 Score=27.32 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred hcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC
Q 017188 110 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT 149 (375)
Q Consensus 110 ~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t 149 (375)
.+|||+||.|+|+---| .-.|.+++++..+..
T Consensus 39 ~dAeLviV~G~sipnd~--------~l~GKkv~i~d~~~A 70 (103)
T COG3925 39 NDAELVIVFGSSIPNDS--------ALNGKKVWIGDIERA 70 (103)
T ss_pred CcccEEEEeccccCCCc--------cccCceEEEecHHHH
Confidence 46899999999953222 225777777655543
No 234
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.05 E-value=81 Score=21.33 Aligned_cols=25 Identities=32% Similarity=0.771 Sum_probs=15.0
Q ss_pred ccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 51 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 51 ~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
.|..||.+.... .. ..-+|+ .||..
T Consensus 2 ~C~~Cg~~~~~~-------~~-~~irC~--~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELK-------PG-DPIRCP--ECGHR 26 (32)
T ss_dssp BESSSSSSE-BS-------TS-STSSBS--SSS-S
T ss_pred CCCcCCCeeEcC-------CC-CcEECC--cCCCe
Confidence 588999876422 11 234798 89864
No 235
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.75 E-value=99 Score=26.70 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=25.2
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 144 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI 144 (375)
+..-|++|++-+|..-...-.....|+++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999888666666667789999998865
No 236
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.52 E-value=1.1e+02 Score=30.55 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=42.0
Q ss_pred hHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC-CC---CCCCceEEEec---cHHHHHHHHHHHh
Q 017188 103 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK-TP---KDKKASLVIHG---FVDKVVAGVMDLL 174 (375)
Q Consensus 103 ~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~-t~---~d~~adl~I~g---~~devL~~L~~~L 174 (375)
+.+.+.+.++|++||||..=. .-..+|...+++.|.+.+.|.-.. -. +.....+.|-+ ..+.+++++.+.|
T Consensus 200 ~a~~~la~~vD~miVVGg~nS-sNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 200 DAVKELAPEVDLMIVIGGKNS-SNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred HHHHHHHhhCCEEEEECCCCC-chHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 344556678999999997522 344567677777787777775432 21 22223344433 3455666666554
No 237
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=20.98 E-value=53 Score=39.32 Aligned_cols=57 Identities=35% Similarity=0.523 Sum_probs=35.9
Q ss_pred EecCCccc-----cccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhcCC
Q 017188 42 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIAD 113 (375)
Q Consensus 42 ELHGnl~~-----~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aD 113 (375)
.|-||+.. .+| +|+..|-+- +..-+|+ +|||.+-.+|- ..++. +-+..|...+++-+
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~---------PL~G~C~--kCGg~~ilTV~--kGsv~-KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRV---------PLKGKCP--KCGSKLILTVS--KGAVE-KYMPVAKMMAEKYN 1591 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccC---------CCCCcCc--ccCCeEEEEEe--cchHH-HHHHHHHHHHHHcC
Confidence 45599864 789 999988543 2335798 89998887774 23322 23455555554433
No 238
>PRK02947 hypothetical protein; Provisional
Probab=20.96 E-value=1.1e+02 Score=29.28 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC------------CCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK------------TPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~------------t~~d~~adl~I~ 160 (375)
.+..-|++|++-.|..-.....+...++++|+++|.|=-.+ .+..+.+|+.|.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 44678999999988887777777777889999999884443 344456677764
No 239
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=20.58 E-value=3e+02 Score=23.23 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=41.4
Q ss_pred hhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhccCCCCc
Q 017188 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 181 (375)
Q Consensus 102 ~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~~~iP~~ 181 (375)
+....+.++.||++|+-|-.- .+... ....|..++... . .+.++++|.+|.+.|.-..|+|
T Consensus 54 ~~~~~~~l~~c~vvi~~~IG~--~a~~~----L~~~gI~~~~~~--~-----------~~~v~eal~~l~~~~~~~~~~w 114 (119)
T TIGR02663 54 IAPKIEALKDCAILYCLAIGG--PAAAK----VVAAKIHPIKVN--E-----------PESISELLERLQKMLKGNPPPW 114 (119)
T ss_pred HHHHHHHhCCCcEEEEhhcCc--cHHHH----HHHcCCeeEecC--C-----------CccHHHHHHHHHHHHcCCCCHH
Confidence 334456678999999966552 11112 234566554331 1 1568999999999998888998
Q ss_pred cch
Q 017188 182 IRI 184 (375)
Q Consensus 182 ~~~ 184 (375)
-++
T Consensus 115 ~~~ 117 (119)
T TIGR02663 115 LRK 117 (119)
T ss_pred HHh
Confidence 654
No 240
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.38 E-value=1.1e+02 Score=30.54 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=42.5
Q ss_pred hhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC-CC---CCCCceEEEec---cHHHHHHHHHHHh
Q 017188 102 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK-TP---KDKKASLVIHG---FVDKVVAGVMDLL 174 (375)
Q Consensus 102 ~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~-t~---~d~~adl~I~g---~~devL~~L~~~L 174 (375)
.+.+.+.+.++|++||+|..-. .-...|...+++.|.+.+.|.-.. -+ +.....+.|-+ ..+.+++++.+.|
T Consensus 200 Q~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 200 QEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp HHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 3445556678999999998533 455677777888888888885432 22 22233455543 4455666666554
No 241
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.32 E-value=1.2e+02 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 145 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN 145 (375)
..+.+-|++|++-.|..-.-...+...++++|+++|.|=
T Consensus 43 ~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 43 SLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 455678999999777665555566677888999988763
No 242
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.21 E-value=1.8e+02 Score=25.91 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEE----EeccHHHHHHH
Q 017188 96 ALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLV----IHGFVDKVVAG 169 (375)
Q Consensus 96 ~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~----I~g~~devL~~ 169 (375)
.++++.++++.+.+.++.-++++|....-..+..+...-..-|.++..++-.....-...|+. ..|...+++..
T Consensus 17 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~ 94 (179)
T cd05005 17 KIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNA 94 (179)
T ss_pred hcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHH
Confidence 455666888888889999899988876655555554333345667766653322211223333 34666666543
Done!