Query 017188
Match_columns 375
No_of_seqs 251 out of 1220
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 5E-50 1.7E-54 392.8 13.6 184 1-184 90-279 (318)
2 3pki_A NAD-dependent deacetyla 100.0 2.2E-49 7.7E-54 392.2 12.2 184 1-184 90-279 (355)
3 1yc5_A NAD-dependent deacetyla 100.0 5.7E-47 1.9E-51 358.5 14.4 171 1-176 75-245 (246)
4 3glr_A NAD-dependent deacetyla 100.0 1.2E-46 4.2E-51 364.2 15.0 172 1-177 91-266 (285)
5 1ma3_A SIR2-AF2, transcription 100.0 1.1E-45 3.7E-50 351.3 13.8 170 1-175 77-247 (253)
6 1m2k_A Silent information regu 100.0 2.1E-45 7.3E-50 348.5 14.6 167 1-175 75-241 (249)
7 1q1a_A HST2 protein; ternary c 100.0 2.9E-45 1E-49 354.4 13.7 174 1-177 88-280 (289)
8 2hjh_A NAD-dependent histone d 100.0 4.9E-45 1.7E-49 362.2 15.4 181 1-184 113-326 (354)
9 4iao_A NAD-dependent histone d 100.0 5.5E-45 1.9E-49 372.6 15.6 179 1-182 251-462 (492)
10 3riy_A NAD-dependent deacetyla 100.0 3.6E-45 1.2E-49 351.6 12.1 169 1-171 84-272 (273)
11 1j8f_A SIRT2, sirtuin 2, isofo 100.0 1.7E-44 5.7E-49 354.6 12.2 173 1-177 111-305 (323)
12 1q14_A HST2 protein; histone d 100.0 3E-44 1E-48 357.6 14.2 174 1-177 96-288 (361)
13 1s5p_A NAD-dependent deacetyla 100.0 2.8E-44 9.7E-49 338.2 13.3 164 1-174 66-230 (235)
14 3u31_A SIR2A, transcriptional 100.0 2.8E-44 9.6E-49 348.5 12.8 168 1-174 108-279 (290)
15 2c31_A Oxalyl-COA decarboxylas 93.7 0.23 7.7E-06 51.1 9.6 71 105-175 266-338 (568)
16 2q28_A Oxalyl-COA decarboxylas 92.5 0.38 1.3E-05 49.3 9.0 69 105-175 264-334 (564)
17 3rls_A YAF9, protein AF-9 homo 91.7 0.48 1.7E-05 42.6 7.6 83 199-284 30-112 (175)
18 3qrl_A Transcription initiatio 91.4 0.36 1.2E-05 42.0 6.3 95 202-300 33-135 (140)
19 2iht_A Carboxyethylarginine sy 91.2 0.39 1.3E-05 49.4 7.6 68 105-175 281-351 (573)
20 1o97_D Electron transferring f 91.2 0.19 6.5E-06 48.9 4.9 58 112-174 260-318 (320)
21 1ybh_A Acetolactate synthase, 90.9 0.49 1.7E-05 48.8 7.9 70 104-175 271-342 (590)
22 4feg_A Pyruvate oxidase; carba 90.8 0.48 1.6E-05 49.2 7.8 69 104-176 269-339 (603)
23 1ozh_A ALS, acetolactate synth 90.6 0.59 2E-05 48.1 8.1 68 104-175 267-336 (566)
24 3lq1_A 2-succinyl-5-enolpyruvy 90.5 0.5 1.7E-05 48.7 7.6 68 106-175 284-353 (578)
25 2pgn_A Cyclohexane-1,2-dione h 89.9 0.58 2E-05 48.4 7.5 69 104-175 264-334 (589)
26 3eya_A Pyruvate dehydrogenase 89.6 0.56 1.9E-05 48.0 7.1 65 104-175 258-324 (549)
27 2uz1_A Benzaldehyde lyase; thi 89.2 0.51 1.7E-05 48.4 6.4 66 109-175 267-334 (563)
28 1efv_A Electron transfer flavo 88.2 0.6 2.1E-05 45.2 5.7 59 112-175 254-313 (315)
29 1efp_A ETF, protein (electron 87.5 0.6 2E-05 45.1 5.3 58 112-174 249-307 (307)
30 3hww_A 2-succinyl-5-enolpyruvy 87.3 0.73 2.5E-05 47.2 6.1 65 104-170 271-337 (556)
31 1v5e_A Pyruvate oxidase; oxido 86.7 1.4 4.9E-05 45.5 7.9 67 104-175 262-331 (590)
32 1q6z_A BFD, BFDC, benzoylforma 86.7 0.74 2.5E-05 46.7 5.6 71 104-175 259-330 (528)
33 2pan_A Glyoxylate carboligase; 86.3 0.84 2.9E-05 47.4 5.9 70 104-175 286-357 (616)
34 2x7j_A 2-succinyl-5-enolpyruvy 86.3 1.1 3.9E-05 46.3 6.9 66 107-175 306-373 (604)
35 1t9b_A Acetolactate synthase, 84.6 1.8 6.1E-05 45.9 7.5 71 105-175 350-429 (677)
36 2vk8_A Pyruvate decarboxylase 76.6 2.7 9.1E-05 42.9 5.3 67 104-174 271-337 (563)
37 1ovm_A Indole-3-pyruvate decar 74.9 3.3 0.00011 42.0 5.5 67 104-175 269-335 (552)
38 2vbi_A Pyruvate decarboxylase; 74.6 3.8 0.00013 41.9 5.9 67 105-175 270-336 (566)
39 2wvg_A PDC, pyruvate decarboxy 73.8 3.9 0.00013 41.8 5.8 67 105-175 270-336 (568)
40 1pno_A NAD(P) transhydrogenase 72.3 9.9 0.00034 34.1 7.1 87 88-174 72-179 (180)
41 2vpz_A Thiosulfate reductase; 70.0 4 0.00014 43.4 4.9 53 109-161 197-252 (765)
42 2k5c_A Uncharacterized protein 68.5 2.5 8.7E-05 33.6 2.2 55 48-110 7-79 (95)
43 2fsv_C NAD(P) transhydrogenase 67.7 10 0.00035 34.6 6.3 88 87-174 94-202 (203)
44 2e7z_A Acetylene hydratase AHY 67.3 2.8 9.4E-05 44.2 3.0 53 108-160 157-212 (727)
45 1djl_A Transhydrogenase DIII; 66.5 10 0.00036 34.6 6.2 89 87-175 93-202 (207)
46 2bru_C NAD(P) transhydrogenase 65.8 9 0.00031 34.5 5.5 87 88-174 79-186 (186)
47 2vbf_A Branched-chain alpha-ke 65.2 3.3 0.00011 42.4 3.0 68 104-175 288-355 (570)
48 1d4o_A NADP(H) transhydrogenas 64.2 12 0.0004 33.7 5.9 88 88-175 71-179 (184)
49 2lcq_A Putative toxin VAPC6; P 63.2 2.7 9.3E-05 36.3 1.6 27 49-86 132-158 (165)
50 1h0h_A Formate dehydrogenase ( 60.2 6.1 0.00021 43.5 4.2 53 108-160 181-235 (977)
51 2ivf_A Ethylbenzene dehydrogen 59.8 6 0.0002 43.5 4.0 52 109-160 244-297 (976)
52 2iv2_X Formate dehydrogenase H 58.6 5.9 0.0002 41.7 3.5 55 107-161 162-218 (715)
53 2nap_A Protein (periplasmic ni 55.5 7.1 0.00024 41.0 3.5 54 108-161 163-220 (723)
54 2nxw_A Phenyl-3-pyruvate decar 54.2 16 0.00055 37.3 5.9 68 104-175 282-349 (565)
55 1eu1_A Dimethyl sulfoxide redu 51.6 5.7 0.0002 42.2 2.1 53 108-160 174-237 (780)
56 1q16_A Respiratory nitrate red 49.7 5.7 0.00019 45.3 1.7 53 108-160 243-297 (1247)
57 1kqf_A FDH-N alpha, formate de 49.4 8.1 0.00028 42.7 2.9 53 108-160 219-274 (1015)
58 3cf4_G Acetyl-COA decarboxylas 49.0 9.6 0.00033 32.9 2.8 63 107-175 103-168 (170)
59 1ti6_A Pyrogallol hydroxytrans 47.8 6.4 0.00022 42.5 1.7 53 108-160 205-265 (875)
60 2i2w_A Phosphoheptose isomeras 45.4 17 0.00059 31.9 3.9 57 107-163 127-184 (212)
61 3i9v_3 NADH-quinone oxidoreduc 43.3 16 0.00055 39.2 3.9 26 136-161 443-468 (783)
62 2xbl_A Phosphoheptose isomeras 43.1 12 0.0004 32.2 2.3 57 108-164 113-170 (198)
63 3trj_A Phosphoheptose isomeras 42.7 25 0.00084 31.0 4.5 57 108-164 111-171 (201)
64 1tmo_A TMAO reductase, trimeth 42.4 11 0.00037 40.4 2.4 52 109-160 208-274 (829)
65 2kdx_A HYPA, hydrogenase/ureas 42.2 12 0.00041 30.7 2.2 33 42-85 66-99 (119)
66 3a43_A HYPD, hydrogenase nicke 41.5 10 0.00035 32.3 1.7 23 40-62 61-83 (139)
67 2yva_A DNAA initiator-associat 40.5 17 0.00057 31.2 3.0 58 107-164 105-166 (196)
68 1tk9_A Phosphoheptose isomeras 40.1 15 0.0005 31.2 2.5 56 108-163 107-163 (188)
69 3sho_A Transcriptional regulat 39.8 14 0.00046 31.5 2.2 58 106-163 82-140 (187)
70 4ayb_P DNA-directed RNA polyme 39.4 16 0.00053 26.1 2.0 30 48-84 2-31 (48)
71 3ml1_A NAPA, periplasmic nitra 38.3 18 0.0006 39.0 3.3 53 108-160 175-231 (802)
72 6rxn_A Rubredoxin; electron tr 37.2 20 0.00069 25.1 2.4 15 47-61 2-16 (46)
73 2gmg_A Hypothetical protein PF 34.4 23 0.0008 29.1 2.7 28 47-84 65-92 (105)
74 2xig_A Ferric uptake regulatio 34.0 37 0.0013 28.6 4.0 47 4-61 63-111 (150)
75 1m3s_A Hypothetical protein YC 34.0 15 0.00052 31.2 1.6 53 108-160 76-129 (186)
76 3c2q_A Uncharacterized conserv 33.6 15 0.00052 36.0 1.7 77 95-175 251-339 (345)
77 1x92_A APC5045, phosphoheptose 33.2 17 0.00059 31.3 1.8 58 107-164 109-170 (199)
78 2xhz_A KDSD, YRBH, arabinose 5 32.7 15 0.00053 31.0 1.4 54 109-162 94-148 (183)
79 3pwf_A Rubrerythrin; non heme 31.7 22 0.00075 31.2 2.3 26 48-85 137-162 (170)
80 1twf_L ABC10-alpha, DNA-direct 30.7 27 0.00091 26.6 2.3 27 48-84 27-53 (70)
81 1vim_A Hypothetical protein AF 30.5 14 0.0005 32.2 0.9 54 109-162 87-141 (200)
82 1jeo_A MJ1247, hypothetical pr 29.8 33 0.0011 28.9 3.0 53 109-162 80-133 (180)
83 3fxa_A SIS domain protein; str 29.6 18 0.00063 31.2 1.4 54 108-161 89-143 (201)
84 1lko_A Rubrerythrin all-iron(I 29.2 22 0.00075 31.6 1.9 28 47-85 153-180 (191)
85 1mzb_A Ferric uptake regulatio 29.0 49 0.0017 27.2 3.9 48 4-62 55-104 (136)
86 2f62_A Nucleoside 2-deoxyribos 28.9 77 0.0026 27.4 5.3 72 101-175 57-159 (161)
87 3dnf_A ISPH, LYTB, 4-hydroxy-3 28.7 75 0.0025 30.6 5.6 87 88-175 184-279 (297)
88 3cvj_A Putative phosphoheptose 25.7 19 0.00065 32.3 0.8 52 109-160 106-169 (243)
89 2epq_A POZ-, at HOOK-, and zin 25.4 56 0.0019 20.4 2.9 39 43-83 4-45 (45)
90 3oy2_A Glycosyltransferase B73 25.2 1.6E+02 0.0056 27.2 7.3 79 90-175 255-354 (413)
91 2w57_A Ferric uptake regulatio 23.8 70 0.0024 26.8 4.0 47 4-61 54-102 (150)
92 3etn_A Putative phosphosugar i 23.8 29 0.00099 30.9 1.6 54 108-161 103-159 (220)
93 3szu_A ISPH, 4-hydroxy-3-methy 23.4 62 0.0021 31.5 4.0 71 104-175 218-295 (328)
94 3h0g_L DNA-directed RNA polyme 23.4 53 0.0018 24.6 2.7 27 49-85 21-47 (63)
95 4rxn_A Rubredoxin; electron tr 23.0 81 0.0028 22.8 3.6 15 47-61 1-15 (54)
96 3na7_A HP0958; flagellar bioge 22.5 42 0.0014 30.9 2.5 40 39-85 192-231 (256)
97 2o03_A Probable zinc uptake re 21.2 84 0.0029 25.5 3.9 47 4-61 47-95 (131)
98 2v3b_B Rubredoxin 2, rubredoxi 21.0 46 0.0016 24.0 1.9 15 47-61 1-15 (55)
99 1vd4_A Transcription initiatio 20.9 47 0.0016 22.9 1.9 40 44-85 9-48 (62)
100 1e8j_A Rubredoxin; iron-sulfur 20.8 50 0.0017 23.6 2.0 15 47-61 1-15 (52)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-50 Score=392.77 Aligned_cols=184 Identities=54% Similarity=0.922 Sum_probs=166.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCC-
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD- 79 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~- 79 (375)
+||.+|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|.++............|.|+.
T Consensus 90 ~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p~~~~C~~~ 169 (318)
T 3k35_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA 169 (318)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCEEEEECCC-
T ss_pred CCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCCCCCcCccc
Confidence 6999999999999999999999999999999999988899999999999999999999887654332222223346641
Q ss_pred -----cCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCC
Q 017188 80 -----LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK 154 (375)
Q Consensus 80 -----~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~ 154 (375)
+.|||.|||+||||||++|.+.++.|.+++++||++|||||||+|+|+++|+..+.++|+++++||+++|+.|..
T Consensus 170 ~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~ 249 (318)
T 3k35_A 170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH 249 (318)
T ss_dssp -------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGG
T ss_pred ccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence 269999999999999999999899999999999999999999999999999998889999999999999999999
Q ss_pred ceEEEeccHHHHHHHHHHHhccCCCCccch
Q 017188 155 ASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 184 (375)
Q Consensus 155 adl~I~g~~devL~~L~~~L~~~iP~~~~~ 184 (375)
+|++|+|+++++|++|++.|||+||+|+.-
T Consensus 250 adl~i~g~~~evl~~L~~~Lg~~iP~~~~~ 279 (318)
T 3k35_A 250 ADLRIHGYVDEVMTRLMKHLGLEIPAWDGP 279 (318)
T ss_dssp CSEEECSCHHHHHHHHHHHHTCCCCCCCSC
T ss_pred ccEEEeCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999863
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=2.2e-49 Score=392.16 Aligned_cols=184 Identities=54% Similarity=0.926 Sum_probs=166.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCC-
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD- 79 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~- 79 (375)
+||.+|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|.++.....+......+.|+.
T Consensus 90 ~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~ 169 (355)
T 3pki_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA 169 (355)
T ss_dssp CCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCEEEEECCCC
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCCCCCccccc
Confidence 5999999999999999999999999999999999987899999999999999999999887654332222222345631
Q ss_pred -----cCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCC
Q 017188 80 -----LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK 154 (375)
Q Consensus 80 -----~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~ 154 (375)
+.|||.|||+||||||++|...++.|.+++++|||+|||||||+|+|+++|+..+.+.|+++|+||+++|+.|..
T Consensus 170 ~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~ 249 (355)
T 3pki_A 170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH 249 (355)
T ss_dssp CBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGG
T ss_pred cccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence 269999999999999999998899999999999999999999999999999998889999999999999999999
Q ss_pred ceEEEeccHHHHHHHHHHHhccCCCCccch
Q 017188 155 ASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 184 (375)
Q Consensus 155 adl~I~g~~devL~~L~~~L~~~iP~~~~~ 184 (375)
+|++|+|+++++|++|++.|||+||+|+..
T Consensus 250 adl~i~g~a~evl~~L~~~Lg~~iP~~~~~ 279 (355)
T 3pki_A 250 ADLRIHGYVDEVMTRLMEHLGLEIPAWDGP 279 (355)
T ss_dssp CSEEECSCHHHHHHHHHHHTTCCCCCCCSC
T ss_pred cCEEEeCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999864
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=5.7e-47 Score=358.55 Aligned_cols=171 Identities=33% Similarity=0.548 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||+ ++|+|+|||++..+|..|++.|+.+.....+. ...+|+||
T Consensus 75 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 149 (246)
T 1yc5_A 75 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLCD-- 149 (246)
T ss_dssp CCCHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBCT--
T ss_pred CCCHHHHHHHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhc-cCCCCCCC--
Confidence 69999999999999999999999999999999998 78999999999999999999987765544332 23579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++|+..+++.|+++|+||+++++.|..+++.|.
T Consensus 150 ~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~ 229 (246)
T 1yc5_A 150 DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYN 229 (246)
T ss_dssp TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred CCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence 89999999999999999998899999999999999999999999999999988888899999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 017188 161 GFVDKVVAGVMDLLNL 176 (375)
Q Consensus 161 g~~devL~~L~~~L~~ 176 (375)
|+++++|++|++.||+
T Consensus 230 ~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 230 MDVVEFARRVMEEGGI 245 (246)
T ss_dssp SCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCC
Confidence 9999999999999986
No 4
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.2e-46 Score=364.24 Aligned_cols=172 Identities=26% Similarity=0.414 Sum_probs=155.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+. ...+|+|+
T Consensus 91 ~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C~-- 167 (285)
T 3glr_A 91 KPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRCP-- 167 (285)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCT--
T ss_pred CCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCCC--
Confidence 699999999999999999999999999999999999899999999999999999999998765433332 34579999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC----CCCCce
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP----KDKKAS 156 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~----~d~~ad 156 (375)
.|||.|||+||||||++|+..+ .+.+.+.+|||+|||||||+|+|++.|+.. .+.|+++|+||++++. .+..+|
T Consensus 168 ~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~l~~~-~~~~~~~v~IN~~~~~~~~~~~~~~d 245 (285)
T 3glr_A 168 VCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFASLTEA-VRSSVPRLLINRDLVGPLAWHPRSRD 245 (285)
T ss_dssp TTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGGGGGS-SCTTSCEEEEESSCCTHHHHSCCTTE
T ss_pred CCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHHHHHH-HhCCCcEEEECCCCcCccccCCCCcc
Confidence 8999999999999999999766 567788999999999999999999999964 4578899999999996 467899
Q ss_pred EEEeccHHHHHHHHHHHhccC
Q 017188 157 LVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 157 l~I~g~~devL~~L~~~L~~~ 177 (375)
+.+.|+|++++++|++.|||+
T Consensus 246 ~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 246 VAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp EEEESCHHHHHHHHHHHHTCH
T ss_pred EEEcCCHHHHHHHHHHHhCCH
Confidence 999999999999999999985
No 5
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.1e-45 Score=351.32 Aligned_cols=170 Identities=33% Similarity=0.533 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|..|++.|+.+.....+. ...+|+||
T Consensus 77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 151 (253)
T 1ma3_A 77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFN-KGEIPRCR-- 151 (253)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHH-TTCCCCCT--
T ss_pred CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-cCCCCCCC--
Confidence 69999999999999999999999999999999998 78999999999999999999988765544332 22469999
Q ss_pred CCCc-cccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEE
Q 017188 81 KCGA-KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI 159 (375)
Q Consensus 81 ~CgG-~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I 159 (375)
.||| .|||+||||||++|++.++.|.+++++||++|||||||+|+|+++|+..++..|+++|+||+++++.|..+++.|
T Consensus 152 ~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i 231 (253)
T 1ma3_A 152 KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKI 231 (253)
T ss_dssp TTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEE
T ss_pred CCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEE
Confidence 8999 999999999999999889999999999999999999999999999998888889999999999999999999999
Q ss_pred eccHHHHHHHHHHHhc
Q 017188 160 HGFVDKVVAGVMDLLN 175 (375)
Q Consensus 160 ~g~~devL~~L~~~L~ 175 (375)
.|+++++|++|++.|.
T Consensus 232 ~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 232 IGKAGEVLPKIVEEVK 247 (253)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 6
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=2.1e-45 Score=348.52 Aligned_cols=167 Identities=33% Similarity=0.548 Sum_probs=155.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||. ++|+|+||+++..+|..|++.|+.+.. + ....+|+||
T Consensus 75 ~Pn~~H~~La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~-~~~~~p~C~-- 146 (249)
T 1m2k_A 75 QPNKAHQAFAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---P-KIPPLPKCD-- 146 (249)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---C-CSSSCCBCS--
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---c-cCCCCCCCC--
Confidence 69999999999999999999999999999999997 799999999999999999998876543 1 123479999
Q ss_pred CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 81 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 81 ~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++|+..+++.|+++|+||+++++.|..+++.|.
T Consensus 147 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~ 226 (249)
T 1m2k_A 147 KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLR 226 (249)
T ss_dssp SSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred CCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence 89999999999999999998899999999999999999999999999999988888999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 017188 161 GFVDKVVAGVMDLLN 175 (375)
Q Consensus 161 g~~devL~~L~~~L~ 175 (375)
|+++++|++|++.|.
T Consensus 227 ~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 227 GKAGEVMDELVRHVR 241 (249)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=2.9e-45 Score=354.37 Aligned_cols=174 Identities=22% Similarity=0.384 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcc--cCcCCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGL--KETSRRCS 78 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~--~~~~P~Cp 78 (375)
+||.+|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+.. ...+|+||
T Consensus 88 ~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~ 167 (289)
T 1q1a_A 88 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD 167 (289)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCT
T ss_pred CCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCC
Confidence 6999999999999999999999999999999999988899999999999999999999987655544422 13579998
Q ss_pred CcCCCccccccEEEcCCCCCccchhHH-------------HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC
Q 017188 79 DLKCGAKLRDTVLDWEDALPPKEMNPA-------------EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 145 (375)
Q Consensus 79 ~~~CgG~LRP~VVlFGE~lP~~~~~~A-------------~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN 145 (375)
.|||.|||+||||||++|++.++.+ .+.+.+||++|||||||+|+|+++|+..+. .|+++|+||
T Consensus 168 --~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN 244 (289)
T 1q1a_A 168 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN 244 (289)
T ss_dssp --TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEES
T ss_pred --CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEE
Confidence 8999999999999999998754433 234678999999999999999999998665 699999999
Q ss_pred CCCCC----CCCCceEEEeccHHHHHHHHHHHhccC
Q 017188 146 LQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 146 lq~t~----~d~~adl~I~g~~devL~~L~~~L~~~ 177 (375)
++++. .+..+|+.|+|+++++|++|++.|||+
T Consensus 245 ~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 245 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp SSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred CCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 99996 245689999999999999999999974
No 8
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-45 Score=362.23 Aligned_cols=181 Identities=22% Similarity=0.297 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCC-
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD- 79 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~- 79 (375)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+. ...+|.||.
T Consensus 113 ~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~P~Cp~C 191 (354)
T 2hjh_A 113 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYC 191 (354)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTT
T ss_pred CCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhh-ccCCCcCccc
Confidence 599999999999999999999999999999999998899999999999999999999888765554442 223577762
Q ss_pred --------------------------------cCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCcccccc
Q 017188 80 --------------------------------LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPA 127 (375)
Q Consensus 80 --------------------------------~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa 127 (375)
+.|+|.|||+||||||++|+..++.|.+++++||++|||||||+|+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Pa 271 (354)
T 2hjh_A 192 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV 271 (354)
T ss_dssp HHHHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETG
T ss_pred cccccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhH
Confidence 135699999999999999998889999999999999999999999999
Q ss_pred ccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhccCCCCccch
Q 017188 128 CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 184 (375)
Q Consensus 128 ~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~~~iP~~~~~ 184 (375)
++|+..+ +.|+++|+||++++..+ .+|+.|+|+|+++|++|++.|||+||.+.-.
T Consensus 272 a~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~~~ 326 (354)
T 2hjh_A 272 SEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKKWN 326 (354)
T ss_dssp GGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTTHH
T ss_pred HHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHHHH
Confidence 9999765 46889999999999865 5899999999999999999999999986543
No 9
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-45 Score=372.62 Aligned_cols=179 Identities=22% Similarity=0.298 Sum_probs=157.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCc
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL 80 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~ 80 (375)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+. ...+|.|+.|
T Consensus 251 ~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~-~~~~P~Cp~C 329 (492)
T 4iao_A 251 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYC 329 (492)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTT
T ss_pred CCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHh-ccCCCCCccc
Confidence 599999999999999999999999999999999998899999999999999999999988765433321 1234555511
Q ss_pred ---------------------------------CCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCcccccc
Q 017188 81 ---------------------------------KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPA 127 (375)
Q Consensus 81 ---------------------------------~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa 127 (375)
.|||.|||+||||||++|++.++.|.+++++|||+|||||||+|+|+
T Consensus 330 g~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPa 409 (492)
T 4iao_A 330 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV 409 (492)
T ss_dssp HHHHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETG
T ss_pred ccccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccch
Confidence 46699999999999999998889999999999999999999999999
Q ss_pred ccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhccCCCCcc
Q 017188 128 CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI 182 (375)
Q Consensus 128 ~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~~~iP~~~ 182 (375)
++|+..+ ..++++|+||+++|+. ..+|+.|.|+|+++++.|++.|||+||.-.
T Consensus 410 A~Lv~~a-~~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~~~ 462 (492)
T 4iao_A 410 SEIVNMV-PSHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPHKK 462 (492)
T ss_dssp GGHHHHS-BTTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCSTT
T ss_pred hhHHHHH-hcCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCChHH
Confidence 9999765 5788999999999985 458999999999999999999999999543
No 10
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=3.6e-45 Score=351.65 Aligned_cols=169 Identities=27% Similarity=0.431 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHH----cCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhh-h-hhh------
Q 017188 1 MPGMTHMALVELEK----AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFE-V-ETI------ 68 (375)
Q Consensus 1 ~PN~aH~aLa~Lek----~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~-v-~~i------ 68 (375)
+||++|++|++|++ +|++.+||||||||||++||+ ++|+|||||++..+|..|++.|..... . ..+
T Consensus 84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~ 161 (273)
T 3riy_A 84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAP 161 (273)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCC
T ss_pred CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCC
Confidence 69999999999996 599999999999999999998 799999999999999999998754210 0 000
Q ss_pred --------cccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCe
Q 017188 69 --------GLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGK 140 (375)
Q Consensus 69 --------~~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~ 140 (375)
-....+|+|+.+.|||.|||+||||||++|++.+++|.+++++|||+|||||||+|+|++.|+..+.++|++
T Consensus 162 ~~~~~~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~ 241 (273)
T 3riy_A 162 EPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVP 241 (273)
T ss_dssp STTCCCCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCC
T ss_pred cccccccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCE
Confidence 012346899322799999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEECCCCCCCCCCceEEEeccHHHHHHHHH
Q 017188 141 IVIVNLQKTPKDKKASLVIHGFVDKVVAGVM 171 (375)
Q Consensus 141 lIiINlq~t~~d~~adl~I~g~~devL~~L~ 171 (375)
+++||+++|+.|..+++.|+|+++++|++|+
T Consensus 242 ~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 242 VAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp EEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred EEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 9999999999999999999999999999885
No 11
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=1.7e-44 Score=354.64 Aligned_cols=173 Identities=25% Similarity=0.420 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCC--CCCcccchhhhhhhcccCcCCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPS--CGSEYFRDFEVETIGLKETSRRCS 78 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~--C~~~y~~d~~v~~i~~~~~~P~Cp 78 (375)
+||++|++|++|+++|++.+||||||||||++||+++++|+||||+++..+|.. |++.|+.++....+. ...+|+||
T Consensus 111 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~C~ 189 (323)
T 1j8f_A 111 KPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPKCE 189 (323)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCBCT
T ss_pred CCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCCCc
Confidence 699999999999999999999999999999999998899999999999999999 999998776544332 34579999
Q ss_pred CcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC-----
Q 017188 79 DLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK----- 153 (375)
Q Consensus 79 ~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~----- 153 (375)
.|||.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++|+..+.+ ++++|+||+++++.+.
T Consensus 190 --~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~ 266 (323)
T 1j8f_A 190 --DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGM 266 (323)
T ss_dssp --TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHH
T ss_pred --CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccc
Confidence 89999999999999999998899999999999999999999999999999987654 4567899999998654
Q ss_pred ---------------CceEEEeccHHHHHHHHHHHhccC
Q 017188 154 ---------------KASLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 154 ---------------~adl~I~g~~devL~~L~~~L~~~ 177 (375)
.+|+.|.|+|+++|++|++.|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 267 IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305 (323)
T ss_dssp HHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred cccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence 379999999999999999999984
No 12
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=3e-44 Score=357.56 Aligned_cols=174 Identities=22% Similarity=0.387 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhccc--CcCCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLK--ETSRRCS 78 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~--~~~P~Cp 78 (375)
+||++|++|++|+++|++.+||||||||||++||++.++|+||||+++..+|..|++.|+.+.....+... ..+|+||
T Consensus 96 ~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp 175 (361)
T 1q14_A 96 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD 175 (361)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCT
T ss_pred CCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCc
Confidence 59999999999999999999999999999999999888999999999999999999998876555444221 2469998
Q ss_pred CcCCCccccccEEEcCCCCCccchhHHHH-------------HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEEC
Q 017188 79 DLKCGAKLRDTVLDWEDALPPKEMNPAEK-------------HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 145 (375)
Q Consensus 79 ~~~CgG~LRP~VVlFGE~lP~~~~~~A~~-------------~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiIN 145 (375)
.|||.|||+||||||++|+..+..+.+ .+.+|||+|||||||+|+|+++|+..+. .|+++|+||
T Consensus 176 --~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN 252 (361)
T 1q14_A 176 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN 252 (361)
T ss_dssp --TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEES
T ss_pred --CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEe
Confidence 899999999999999999877665554 4678999999999999999999988665 699999999
Q ss_pred CCCCC----CCCCceEEEeccHHHHHHHHHHHhccC
Q 017188 146 LQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 177 (375)
Q Consensus 146 lq~t~----~d~~adl~I~g~~devL~~L~~~L~~~ 177 (375)
+++++ .+..+++.|+|+++++|++|++.|||+
T Consensus 253 ~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 253 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp SSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred CCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 99995 256789999999999999999999984
No 13
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=2.8e-44 Score=338.18 Aligned_cols=164 Identities=25% Similarity=0.376 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHH-cCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCC
Q 017188 1 MPGMTHMALVELEK-AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD 79 (375)
Q Consensus 1 ~PN~aH~aLa~Lek-~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~ 79 (375)
+||++|++|++|++ .|++.+||||||||||++||. ++|+||||+++..+|..|++.|+.+..+. ....|.|+
T Consensus 66 ~Pn~~H~~La~L~~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~----~~~~p~c~- 138 (235)
T 1s5p_A 66 QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDVT----PEDKCHCC- 138 (235)
T ss_dssp CCCHHHHHHHHHHHHHGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCCC----SSCCC----
T ss_pred CCCHHHHHHHHHHHhhCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhcc----CCCCCCCC-
Confidence 59999999999999 699999999999999999995 79999999999999999999887654221 22345665
Q ss_pred cCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEE
Q 017188 80 LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI 159 (375)
Q Consensus 80 ~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I 159 (375)
.|||.|||+||||||+ |+ .++++.+++++||++|||||||+|+|+++|+..+++.|+++|+||+++++.|..+++.|
T Consensus 139 -~Cgg~lrP~vv~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i 215 (235)
T 1s5p_A 139 -QFPAPLRPHVVWFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKY 215 (235)
T ss_dssp -----CEEEEECCTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEE
T ss_pred -CCCCeecCcEEEeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEE
Confidence 8999999999999999 74 68999999999999999999999999999999888899999999999999999999999
Q ss_pred eccHHHHHHHHHHHh
Q 017188 160 HGFVDKVVAGVMDLL 174 (375)
Q Consensus 160 ~g~~devL~~L~~~L 174 (375)
+|+++++|++|++.|
T Consensus 216 ~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 216 YGPASQVVPEFVEKL 230 (235)
T ss_dssp ESCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHH
Confidence 999999999999876
No 14
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=2.8e-44 Score=348.50 Aligned_cols=168 Identities=28% Similarity=0.408 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecCCccccccCCCCCcccchhhhhh---hcccCcCCCC
Q 017188 1 MPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVET---IGLKETSRRC 77 (375)
Q Consensus 1 ~PN~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHGnl~~~~C~~C~~~y~~d~~v~~---i~~~~~~P~C 77 (375)
+||++|++|++|+++|++.+||||||||||++||+ ++|+|||||++..+|..|++.|+.+..... ......+|+|
T Consensus 108 ~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C 185 (290)
T 3u31_A 108 EINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPEC 185 (290)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBC
T ss_pred CCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhcccccccccCCCCC
Confidence 69999999999999999999999999999999998 799999999999999999998876543321 1123457999
Q ss_pred CCcCCCccccccEEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC-Cce
Q 017188 78 SDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KAS 156 (375)
Q Consensus 78 p~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~-~ad 156 (375)
| |||.|||+||||||++|++.++.|.+++++|||+|||||||+|+|+++|+..+++.|+++|+||+++|+.|. .+|
T Consensus 186 ~---Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d 262 (290)
T 3u31_A 186 P---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSD 262 (290)
T ss_dssp T---TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCS
T ss_pred C---CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccce
Confidence 7 999999999999999999889999999999999999999999999999999888899999999999999975 689
Q ss_pred EEEeccHHHHHHHHHHHh
Q 017188 157 LVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 157 l~I~g~~devL~~L~~~L 174 (375)
+.|+|+++++++ +++.|
T Consensus 263 ~~i~g~a~~vl~-~~~~l 279 (290)
T 3u31_A 263 YHVCAKFSELTK-VANIL 279 (290)
T ss_dssp EEEESCGGGHHH-HHHHH
T ss_pred EEEECCHHHHHH-HHHHH
Confidence 999999999876 44443
No 15
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=93.70 E-value=0.23 Score=51.08 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+...+.+||++|++|+.+.-......+......+.++|.|+.++...+. ..++.|.+++..+|++|.+.+.
T Consensus 266 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 266 RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 3456789999999999986332211111111146789999998876653 4588999999999999988775
No 16
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.45 E-value=0.38 Score=49.30 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=49.6
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+.+.-........ ...+.++|.|+.++...+. ..++.|.|++..+|.+|.+.+.
T Consensus 264 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 264 RSFALANADVVMLVGARLNWLLAHGKKG--WAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGTTT--SCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHhHhhcCCEEEEECCcccccccccccc--cCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 3456789999999999885322111011 1246789999998876553 4678999999999999988764
No 17
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=91.67 E-value=0.48 Score=42.58 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=60.1
Q ss_pred CccccceEEeeeccCCCCccccceeeeeecCCccccccccccCCCceeEeeeecccceeEEEEEeecCCCCCCcceeeee
Q 017188 199 KKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIP 278 (375)
Q Consensus 199 ~~~~~w~l~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 278 (375)
.-.-.|++-+.+.++..- ..++++|.-..-....--=-+++.+||.+..+. -+.|+|.|++.|.+..|+-...|.|.
T Consensus 30 ~~TH~WtVyVr~~~~edi-s~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G--WGeF~i~I~i~F~~~~~ek~i~i~H~ 106 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDI-SYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG--WGEFDINIKVYFVEEANEKVLNFYHR 106 (175)
T ss_dssp TCCEEEEEEEECGGGCCC-TTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE--SSCCEEEEEEEECGGGCCCCEEEEEE
T ss_pred CCcEEEEEEEECCCCCCh-hheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE--EeeEEEEEEEEEeCCCCCccEEEEEE
Confidence 345679998888776533 368999888654332212236789999997443 47999999999999888888999888
Q ss_pred eccccC
Q 017188 279 FDFKVP 284 (375)
Q Consensus 279 ~~~~~~ 284 (375)
.-++..
T Consensus 107 L~L~~~ 112 (175)
T 3rls_A 107 LRLHPY 112 (175)
T ss_dssp CCCCC-
T ss_pred EEecCC
Confidence 766644
No 18
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=91.40 E-value=0.36 Score=41.97 Aligned_cols=95 Identities=13% Similarity=0.238 Sum_probs=63.4
Q ss_pred ccce--EEeeeccCCCCccccceeeeeecCCccccccccccCCCceeEeeeecccceeEEEEEeecCCCCCCcceeeeee
Q 017188 202 VNWT--LRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPF 279 (375)
Q Consensus 202 ~~w~--l~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 279 (375)
-+|+ +-+.+.+|..-+..++++|.-..-....----++..+||.+..+ .-+.|+|.|++.|.+..+ -..|.|..
T Consensus 33 h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~--GWGeF~i~I~i~f~~~~~--~~~i~H~L 108 (140)
T 3qrl_A 33 RQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQ--GWGGFPLDISVFLLEKAG--ERKIPHDL 108 (140)
T ss_dssp EEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEE--ESSCCCEEEEEEEGGGTE--EEEEEECC
T ss_pred cEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEE--EeeeEEEEEEEEEecCCC--cEEEEEEE
Confidence 4799 78888888776667999998764322211113678999999743 348999999999987543 35677777
Q ss_pred ccccCC------CCCcCChHHHHHHHH
Q 017188 280 DFKVPP------KCFELDKDDIFQRLR 300 (375)
Q Consensus 280 ~~~~~~------~~~~~~~~~~~~~~~ 300 (375)
+|+... -.|+.-++...++|+
T Consensus 109 ~f~~~~y~~~h~i~f~np~~~l~~~L~ 135 (140)
T 3qrl_A 109 NFLQESYEVEHVIQIPLNKPLLTEELA 135 (140)
T ss_dssp CSSSSEEEEEEEEEEESCSHHHHHHHT
T ss_pred EeCCCCCcceEEEEECCCCHHHHHHHH
Confidence 777542 123344555555554
No 19
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.24 E-value=0.39 Score=49.41 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=50.9
Q ss_pred HHHHhhcCCEEEEEccC-ccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTS-LQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTS-L~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+. +.-.....+. ...+.++|.|+.++...+. ..++.|.|++..+++.|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 44567899999999998 6433222221 1146789999999887664 4689999999999999988775
No 20
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=91.18 E-value=0.19 Score=48.87 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHh
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L 174 (375)
|+|.|.+|-|.+++-.+.| +.-..+|-||.+|. |.=+.+|+.|-||.-+++|+|.+.|
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 4999999999998876665 23345788999875 5556899999999999999999886
No 21
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=90.87 E-value=0.49 Score=48.84 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=51.2
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.-...+.. ...+.++|.|+.++...++ ..++.|.|++..+|..|.+.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGG--TTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCcccc--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 45567789999999999875322222211 1246789999999887654 4689999999999999987664
No 22
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=90.79 E-value=0.48 Score=49.18 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=51.8
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhcc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 176 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~~ 176 (375)
.+.+.+.+||++|++|+.+....+ .. ....++++|.|+.++...++ ..++.|.|++..+|+.|.+.+..
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~~---~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 339 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFAEV---SK-AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE 339 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTT---TT-TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCEEEEECCCCCcccc---cc-cCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc
Confidence 355677899999999999763222 11 11346789999999887653 46899999999999999887753
No 23
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.57 E-value=0.59 Score=48.07 Aligned_cols=68 Identities=13% Similarity=0.294 Sum_probs=49.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|++|+.........+ ...+.++|.|+.++...+. ..++.|.|++..+|+.|.+.+.
T Consensus 267 ~~~~~l~~aDlvl~lG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 267 AGDRLLQLADLVICIGYSPVEYEPAMW----NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHHHCSEEEEESCCGGGSCGGGT----CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCEEEEECCCCCcCCcccc----CCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 345567889999999995322222222 1236799999999887654 4689999999999999988765
No 24
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=90.55 E-value=0.5 Score=48.72 Aligned_cols=68 Identities=15% Similarity=0.021 Sum_probs=49.9
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
...+.+||++|.+|+.+.-.+...+. ....+.++|.|+.++...+. ..++.|.|++..+|+.|.+.+.
T Consensus 284 ~~~~~~aDlvl~~G~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 284 IIDKLTPEVVIRFGSMPVSKPLKNWL--EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHHTCCSEEEEESSCCSCHHHHHHH--HHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred ccccCCCCEEEEeCCcccchhHHHHH--hcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 34567899999999975433322221 11256899999999876653 4689999999999999988765
No 25
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=89.95 E-value=0.58 Score=48.37 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=51.4
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.... +.. ...+.++|.|+.++...+. ..++.|.|++..+|+.|.+.+.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIA-QGY--ITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTT-TTT--TCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCEEEEECCCccccccc-ccc--cCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 3456778999999999987533322 211 1246789999999876654 4689999999999999998775
No 26
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.64 E-value=0.56 Score=47.95 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=49.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.... + ...+.++|.|+.++...+. ..++.|.|++..+|..|.+.+.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~~---~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYRA---F----YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCGG---G----SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCEEEEECCCCCccc---c----CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 34567789999999999875321 1 1356789999999877653 4578999999999999887765
No 27
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=89.23 E-value=0.51 Score=48.40 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=50.0
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+||++|++|+.+.-.....+... ...+.++|.|+.++...++ ..++.|.|++..+|+.|.+.+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 6889999999998865554322111 1126789999999877654 4689999999999999988775
No 28
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=88.17 E-value=0.6 Score=45.22 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+|.|.+|-|.+++-.+.| +.-..+|-||.+|. |.=+.+|+.|-||.-+++|+|.+.|.
T Consensus 254 P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 254 PELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred cceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 5899999999999887776 22345788999875 55568999999999999999999874
No 29
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=87.53 E-value=0.6 Score=45.10 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCEEEEEccCccccccccchHhhhcCCCeEEEECCCCC-CCCCCceEEEeccHHHHHHHHHHHh
Q 017188 112 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 112 aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t-~~d~~adl~I~g~~devL~~L~~~L 174 (375)
.+|.|.+|-|.+++-.+.| +.-..+|-||.+|. |.=+.+|+.|-||.-+++|+|.+.|
T Consensus 249 P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 249 PELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 6899999999999887776 22345788999875 5556899999999999999998764
No 30
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=87.29 E-value=0.73 Score=47.24 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=46.9
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHH
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 170 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L 170 (375)
.+.+.+.+||++|++|+.+.-.+...+.. .....++|.|+.++...++ ..++.|.|++..+++.|
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQA--SCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHH--HCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHh--cCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 34567789999999999985433333221 1233489999999887654 46899999999998875
No 31
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=86.69 E-value=1.4 Score=45.46 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=50.6
Q ss_pred HHHHHhhcCCEEEEEccCcccccc-ccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPA-CNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+..... ... . .+.++|.|+.++...++ ..++.|.|++..+++.|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~---~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF--R---NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT--T---TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC--C---CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 455678899999999998754431 001 0 35689999998876654 4579999999999999998775
No 32
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=86.69 E-value=0.74 Score=46.72 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC-CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~-~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.....+... ...+.++|.|+.++...++ ..++.|.+++..+|..|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQY-LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCS-SCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCc-CCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 455678899999999998765554433211 1246789999998754321 5678999999999999988764
No 33
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=86.31 E-value=0.84 Score=47.36 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...++ ..++.|.|++..++..|.+.+.
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 357 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEK--YTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHH--HHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 45667789999999999875222222211 1246789999998876553 4578899999999999987653
No 34
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=86.29 E-value=1.1 Score=46.31 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+.++ +|++|++|+.+.-.....+. ....+.++|.|+.++...++ ..++.|.|++..+|..|.+.+.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWL--KDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHH--HHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHHH--hhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3444 89999999987432222221 11226789999999987764 4688999999999999988774
No 35
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=84.56 E-value=1.8 Score=45.85 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=48.8
Q ss_pred HHHHhhcCCEEEEEccCcccccccc---chHhhh----cCCCeEEEECCCCCCCCC--CceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACN---LPLKCL----RGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~---Lp~~a~----~~G~~lIiINlq~t~~d~--~adl~I~g~~devL~~L~~~L~ 175 (375)
+...+.+||++|.+|+.+.-.-... +...++ .....+|.|+.++...+. ..++.|.|++..+|..|.+.|.
T Consensus 350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 4456789999999999876322222 211121 223348889888876653 4689999999999999987664
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=76.56 E-value=2.7 Score=42.93 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=45.5
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHh
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L 174 (375)
.+.+.+.+||++|++|+.+.-.+...+.. ...+.++|.||.++...+.. .....++..+++.|.+.+
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 337 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSY--SYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTI 337 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCC--CCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccc--CCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhh
Confidence 34567789999999999886544433321 11357899999998776543 334445678888887655
No 37
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=74.87 E-value=3.3 Score=42.03 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.+...+.. ...+.++|.|+.++...++. ......+..+++.|.+ ++
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTH--QLTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCC--CCCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--CCCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh-Cc
Confidence 45567889999999999887655544321 11356789999988766542 3334456788888876 54
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=74.55 E-value=3.8 Score=41.88 Aligned_cols=67 Identities=7% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...+. .....-.+..+++.|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSA--WPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTS--CCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCccccccccccc--cCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 4556789999999999876554433321 1246789999999876654 34445567888888887664
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=73.83 E-value=3.9 Score=41.80 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=45.7
Q ss_pred HHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 105 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 105 A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...+. ......++..+|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWTD--IPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTTC--CCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCccccccccccc--CCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 4456788999999999876444333321 1245678999999876653 34455567888888887664
No 40
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=72.28 E-value=9.9 Score=34.05 Aligned_cols=87 Identities=17% Similarity=0.357 Sum_probs=58.4
Q ss_pred ccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc---------chHhhhcCCCeEEEECCCCCC-C---
Q 017188 88 DTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP-K--- 151 (375)
Q Consensus 88 P~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~---------Lp~~a~~~G~~lIiINlq~t~-~--- 151 (375)
-||++-.-.+|-+ .++.+-..+.++|+.||||..=.|.|++. +|-.-.-+-..+|+++..-.. +
T Consensus 72 mNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv 151 (180)
T 1pno_A 72 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGV 151 (180)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCC
T ss_pred ceEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCC
Confidence 4777777777755 35566677889999999999888888764 221111122356666655322 1
Q ss_pred C-----CCceEEEeccHHHHHHHHHHHh
Q 017188 152 D-----KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 152 d-----~~adl~I~g~~devL~~L~~~L 174 (375)
+ ...+..+.||+.+.+.+|.+.|
T Consensus 152 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 152 ENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp CCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHh
Confidence 1 3346788999999999998875
No 41
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=69.96 E-value=4 Score=43.40 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=39.7
Q ss_pred hhcCCEEEEEccCcccc-c--cccchHhhhcCCCeEEEECCCCCCCCCCceEEEec
Q 017188 109 CKIADVVLCLGTSLQIT-P--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~-P--a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g 161 (375)
+++||++|++|+-.... | .......++++|+++|.|++..|.....||.+|.-
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 56899999999865432 2 12223456788999999999999888888988753
No 42
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=68.52 E-value=2.5 Score=33.63 Aligned_cols=55 Identities=25% Similarity=0.488 Sum_probs=37.5
Q ss_pred cccccCCCCCcccchhhhhhhc------------------ccCcCCCCCCcCCCccccccEEEcCCCCCccchhHHHHHh
Q 017188 48 FMEACPSCGSEYFRDFEVETIG------------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHC 109 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~------------------~~~~~P~Cp~~~CgG~LRP~VVlFGE~lP~~~~~~A~~~i 109 (375)
+...|+-||...++...++++- ..+-.-+|| .||.. |||-.||.+.-++..+.+
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEE------FyG~~Lp~~EaeKVFELL 78 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEE------FYGKTLPRREAEKVFELL 78 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCE------EETTSSCTTTHHHHHHHH
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHH------HhcccCChHHHHHHHHHH
Confidence 5678999999887765554431 011235898 89864 789999987666666665
Q ss_pred h
Q 017188 110 K 110 (375)
Q Consensus 110 ~ 110 (375)
.
T Consensus 79 N 79 (95)
T 2k5c_A 79 N 79 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=67.72 E-value=10 Score=34.61 Aligned_cols=88 Identities=17% Similarity=0.348 Sum_probs=59.2
Q ss_pred cccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc---------chHhhhcCCCeEEEECCCCCC-C--
Q 017188 87 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP-K-- 151 (375)
Q Consensus 87 RP~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~---------Lp~~a~~~G~~lIiINlq~t~-~-- 151 (375)
..||++-.-.+|-+ .++++-..+.++|+.||||..=.|.|++. +|-.-.-+-..+|+++..-.. +
T Consensus 94 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg 173 (203)
T 2fsv_C 94 HMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAG 173 (203)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred CccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCC
Confidence 45777777777765 35566667789999999999988888764 221111122356666665322 1
Q ss_pred -C-----CCceEEEeccHHHHHHHHHHHh
Q 017188 152 -D-----KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 152 -d-----~~adl~I~g~~devL~~L~~~L 174 (375)
+ ...+..+.||+.+.+.+|.+.|
T Consensus 174 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 174 VENELFFRNNTMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp CCCGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred CcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 1 2346788999999999998875
No 44
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=67.32 E-value=2.8 Score=44.25 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=38.5
Q ss_pred HhhcCCEEEEEccCcccc-c--cccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT-P--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~-P--a~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+++||++|++|+-.... | .......++++|+++|+|++..|.....||+.|.
T Consensus 157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 357899999999865532 2 1222234667899999999998876667888874
No 45
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=66.50 E-value=10 Score=34.64 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=60.5
Q ss_pred cccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc---------chHhhhcCCCeEEEECCCCCC-C--
Q 017188 87 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP-K-- 151 (375)
Q Consensus 87 RP~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~---------Lp~~a~~~G~~lIiINlq~t~-~-- 151 (375)
..||++-.-.+|-+ .++++-..+.++|+.||||..=.|.|++. +|-.-.-+-..+|+++..-.. +
T Consensus 93 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg 172 (207)
T 1djl_A 93 QLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAA 172 (207)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred CCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCC
Confidence 45777777777765 35666677889999999999888888764 331111122356666665322 2
Q ss_pred -C-----CCceEEEeccHHHHHHHHHHHhc
Q 017188 152 -D-----KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 152 -d-----~~adl~I~g~~devL~~L~~~L~ 175 (375)
+ ...+..+.||+.+.+.+|.+.|.
T Consensus 173 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 202 (207)
T 1djl_A 173 VDNPIFYKPNTAMLLGDAKKTCDALQAKVR 202 (207)
T ss_dssp CCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 1 23467889999999999998875
No 46
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=65.82 E-value=9 Score=34.46 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=55.7
Q ss_pred ccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc---------chHhhhcCCCeEEEECCCCCC-C---
Q 017188 88 DTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP-K--- 151 (375)
Q Consensus 88 P~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~---------Lp~~a~~~G~~lIiINlq~t~-~--- 151 (375)
-||++-.-.+|-+ .++++-..+.++|+.||||..=.|.|++. +|-.-.-+-..+|+++..-.. +
T Consensus 79 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv 158 (186)
T 2bru_C 79 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGV 158 (186)
T ss_dssp HHHHHHHHTCCTTTEEESCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCC
T ss_pred ceEEEEecCCCHHHHhhHHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCC
Confidence 3666555555643 35556678899999999999888888764 221111122345556554322 1
Q ss_pred C-----CCceEEEeccHHHHHHHHHHHh
Q 017188 152 D-----KKASLVIHGFVDKVVAGVMDLL 174 (375)
Q Consensus 152 d-----~~adl~I~g~~devL~~L~~~L 174 (375)
+ ...+..+.||+.+.+.+|.+.|
T Consensus 159 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l 186 (186)
T 2bru_C 159 QNPLFFKENTHMLFGDAKASVDAILKAL 186 (186)
T ss_dssp SCTTTBSSSEEEECSCHHHHHHHHHHHC
T ss_pred cCcceecCCceEEeccHHHHHHHHHHhC
Confidence 1 3346788999999999988753
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=65.19 E-value=3.3 Score=42.38 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...++ ......++..+++.|.+.++
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTH--HLDENKMISLNIDEGIIFN--KVVEDFDFRAVVSSLSELKG 355 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCC--CCCGGGEEEECSSCEEETT--EEECSSCHHHHHHTGGGCCS
T ss_pred HHHHHHHhCCEEEEECCCccccccccccc--CCCCCeEEEEeCCHHHhCC--eeecCCCHHHHHHHHHHhcc
Confidence 34567789999999999875444433321 1134678999998876554 23444467777777765543
No 48
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=64.24 E-value=12 Score=33.72 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=58.3
Q ss_pred ccEEEcCCCCCcc---chhHHHHHhhcCCEEEEEccCcccccccc---------chHhhhcCCCeEEEECCCCCC-C---
Q 017188 88 DTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP-K--- 151 (375)
Q Consensus 88 P~VVlFGE~lP~~---~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~---------Lp~~a~~~G~~lIiINlq~t~-~--- 151 (375)
-||++-.-.+|-+ .++++-..+.++|+.||||..=.|.|++. +|-.-.-+-..+|+++..-.. +
T Consensus 71 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv 150 (184)
T 1d4o_A 71 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAV 150 (184)
T ss_dssp HHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCC
T ss_pred ceEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCC
Confidence 3666666666754 35666677889999999999888888764 331111122246666665322 1
Q ss_pred C-----CCceEEEeccHHHHHHHHHHHhc
Q 017188 152 D-----KKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 152 d-----~~adl~I~g~~devL~~L~~~L~ 175 (375)
+ ...+..+.||+.+.+.+|.+.|.
T Consensus 151 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 179 (184)
T 1d4o_A 151 DNPIFYKPNTAMLLGDAKKTCDALQAKVR 179 (184)
T ss_dssp CCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 1 23467889999999999998875
No 49
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=63.20 E-value=2.7 Score=36.32 Aligned_cols=27 Identities=26% Similarity=0.689 Sum_probs=19.3
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCccc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 86 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~L 86 (375)
..+|..||+.|... .....|| .||+.+
T Consensus 132 ~y~C~~Cg~~~~~~---------~~~~~Cp--~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL---------PPGGVCP--DCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSC---------CGGGBCT--TTCCBE
T ss_pred EEECCCCCCcccCC---------CCCCcCC--CCCCcc
Confidence 57899999988532 1123799 899875
No 50
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=60.25 E-value=6.1 Score=43.46 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=39.4
Q ss_pred HhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-.... |. ......++++|+++|+|++..|.....||+.|.
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~ 235 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAP 235 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeec
Confidence 467899999999865432 21 122234677899999999999988788898865
No 51
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=59.84 E-value=6 Score=43.51 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=39.3
Q ss_pred hhcCCEEEEEccCcccc--ccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 109 CKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~--Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
+.+||++|++|+-.... +.......++++|+++|.|++..+.....||++|.
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ 297 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVP 297 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEec
Confidence 56799999999865421 23333345777899999999999988788898875
No 52
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=58.60 E-value=5.9 Score=41.67 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=39.0
Q ss_pred HHhhcCCEEEEEccCcccc-cc-ccchHhhhcCCCeEEEECCCCCCCCCCceEEEec
Q 017188 107 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g 161 (375)
..+.+||++|++|+-.... |. ......++++|+++|.|++..|.....+|++|.-
T Consensus 162 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~i 218 (715)
T 2iv2_X 162 NEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL 218 (715)
T ss_dssp GGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECC
T ss_pred hHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEecc
Confidence 3467899999999864422 21 1112346779999999999988766677887753
No 53
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=55.47 E-value=7.1 Score=41.01 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=38.2
Q ss_pred HhhcCCEEEEEccCcccc-cc-ccchHhhhcC--CCeEEEECCCCCCCCCCceEEEec
Q 017188 108 HCKIADVVLCLGTSLQIT-PA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~-Pa-~~Lp~~a~~~--G~~lIiINlq~t~~d~~adl~I~g 161 (375)
.+++||++|++|+-.... |. ......++++ |+++|.|++..|.....+|++|.-
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~i 220 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAF 220 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECC
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeec
Confidence 467899999999864422 21 1112235555 999999999998877788888754
No 54
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=54.24 E-value=16 Score=37.25 Aligned_cols=68 Identities=13% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEeccHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g~~devL~~L~~~L~ 175 (375)
.+.+.+++||++|++|+.+.-.+...+... ....++|.|+.++...... ....-....+++.|.+.+.
T Consensus 282 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 349 (565)
T 2nxw_A 282 EITRLVEESDGLFLLGAILSDTNFAVSQRK--IDLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERLP 349 (565)
T ss_dssp HHHHHHHTCSEEEEESCCBCSSTTSBCTTT--SCGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhcc
Confidence 345677899999999998765554433211 1224678888776554432 2333345677777776553
No 55
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=51.59 E-value=5.7 Score=42.22 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred HhhcCCEEEEEccCccc-ccc---------ccchHhhhcCCCeEEEECCCCCCCCCCc-eEEEe
Q 017188 108 HCKIADVVLCLGTSLQI-TPA---------CNLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V-~Pa---------~~Lp~~a~~~G~~lIiINlq~t~~d~~a-dl~I~ 160 (375)
.+++||++|++|+-... .|. ......++++|+++|+|++..|.....+ |++|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 57899999999986543 222 1122346678999999999988765554 77775
No 56
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=49.66 E-value=5.7 Score=45.27 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=39.1
Q ss_pred HhhcCCEEEEEccCccc--cccccchHhhhcCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V--~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-... .+.......++++|+++|.|++..+.....||++|.
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 45689999999996532 233333445677899999999998876677888875
No 57
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=49.41 E-value=8.1 Score=42.67 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=38.1
Q ss_pred HhhcCCEEEEEccCcccc-c-cccchHhhh-cCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQIT-P-ACNLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~-P-a~~Lp~~a~-~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-.... | .......++ ++|+++|+|++..|.....||+.|.
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~ 274 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAP 274 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEEC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeec
Confidence 456899999999865432 2 112233466 7899999999998876667888775
No 58
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=49.00 E-value=9.6 Score=32.87 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=35.1
Q ss_pred HHhhcCCEEEEEccCc--cccccccchHhhhcCCCeEEEECCCCCCCCCCceEEEec-cHHHHHHHHHHHhc
Q 017188 107 KHCKIADVVLCLGTSL--QITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG-FVDKVVAGVMDLLN 175 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL--~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d~~adl~I~g-~~devL~~L~~~L~ 175 (375)
+.+++||++|++|+.+ .-.....+... .. .++|.|+....+. ....+.. ...++++.|.+.+.
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~--~~-~~iI~i~~~~~~~---~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNF--SN-LKTIAIERGYIQN---ATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHH--CC-CCEEECSSSCCTT---SSEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCcccccccccccc--CC-CeEEEECCCcccc---hhhhhccCCHHHHHHHHHHHHh
Confidence 3567899999999987 43322222111 12 5677665543221 1223322 46778877776543
No 59
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=47.78 E-value=6.4 Score=42.52 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=36.7
Q ss_pred HhhcCCEEEEEccCccccccc-------cchHhhhcCCCeEEEECCCCCCCCCC-ceEEEe
Q 017188 108 HCKIADVVLCLGTSLQITPAC-------NLPLKCLRGGGKIVIVNLQKTPKDKK-ASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~-------~Lp~~a~~~G~~lIiINlq~t~~d~~-adl~I~ 160 (375)
.+.+||++|++|+-..-.|.. .+...++++|+++|+|++..|..... ||++|.
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~ 265 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFS 265 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEEC
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEec
Confidence 478999999999976323431 11122677999999999988865444 576653
No 60
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=45.44 E-value=17 Score=31.90 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
..+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 34677899999999988666666667788899988777 4455666677888876554
No 61
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=43.31 E-value=16 Score=39.20 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.2
Q ss_pred cCCCeEEEECCCCCCCCCCceEEEec
Q 017188 136 RGGGKIVIVNLQKTPKDKKASLVIHG 161 (375)
Q Consensus 136 ~~G~~lIiINlq~t~~d~~adl~I~g 161 (375)
++|+++|+|++..|.....+|.++.-
T Consensus 443 ~~g~klividPr~t~ta~~Ad~~l~i 468 (783)
T 3i9v_3 443 RRTDKMALFAPYRAPLMKWAAIHEVH 468 (783)
T ss_dssp CCTTSEEEEESSCCGGGTTCSEEEEC
T ss_pred cCCCEEEEEeCCcchhhHhhcceEec
Confidence 67899999999999888888887653
No 62
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=43.05 E-value=12 Score=32.15 Aligned_cols=57 Identities=12% Similarity=-0.059 Sum_probs=41.7
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~d 164 (375)
.+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-..+
T Consensus 113 ~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 113 LGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 4577899999998887666666667788899998877 44455555667777765444
No 63
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=42.66 E-value=25 Score=30.97 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=43.3
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCc---eEEEeccHH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKA---SLVIHGFVD 164 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~a---dl~I~g~~d 164 (375)
.+.+-|++|++-.|....-.......++++|+++|.| +....+..+.+ |+.|.-...
T Consensus 111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 4677899999999988777777777889999999888 44555666667 877764443
No 64
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=42.36 E-value=11 Score=40.38 Aligned_cols=52 Identities=6% Similarity=0.024 Sum_probs=36.7
Q ss_pred hhcCCEEEEEccCcccc-c---------cccchHhhhc---CCC-eEEEECCCCCCCCCCc-eEEEe
Q 017188 109 CKIADVVLCLGTSLQIT-P---------ACNLPLKCLR---GGG-KIVIVNLQKTPKDKKA-SLVIH 160 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~-P---------a~~Lp~~a~~---~G~-~lIiINlq~t~~d~~a-dl~I~ 160 (375)
+++||++|++|+-.... | .......+++ +|+ ++|+|++..|.....+ |++|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 68999999999965421 2 2222234566 899 9999999988766666 77763
No 65
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.20 E-value=12 Score=30.71 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=21.9
Q ss_pred EecCCccccccCCCCCcccchhhhhhhcccCcCC-CCCCcCCCcc
Q 017188 42 ELHGNSFMEACPSCGSEYFRDFEVETIGLKETSR-RCSDLKCGAK 85 (375)
Q Consensus 42 ELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P-~Cp~~~CgG~ 85 (375)
++.-.--..+|.+||+.|..+ .... .|| .||+.
T Consensus 66 ~i~~~p~~~~C~~CG~~~e~~---------~~~~~~CP--~Cgs~ 99 (119)
T 2kdx_A 66 DIVDEKVELECKDCSHVFKPN---------ALDYGVCE--KCHSK 99 (119)
T ss_dssp EEEEECCEEECSSSSCEECSC---------CSTTCCCS--SSSSC
T ss_pred EEEeccceEEcCCCCCEEeCC---------CCCCCcCc--cccCC
Confidence 333333468999999987542 2235 698 89987
No 66
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=41.49 E-value=10 Score=32.28 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=15.7
Q ss_pred eEEecCCccccccCCCCCcccch
Q 017188 40 LAELHGNSFMEACPSCGSEYFRD 62 (375)
Q Consensus 40 ViELHGnl~~~~C~~C~~~y~~d 62 (375)
-+++.-.--..+|.+||+.|..+
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEEecCCcEECCCCCCEEecc
Confidence 34444444578999999987654
No 67
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=40.53 E-value=17 Score=31.22 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=42.3
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCC---ceEEEeccHH
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIHGFVD 164 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~---adl~I~g~~d 164 (375)
..+.+-|++|++-.|....-.......++++|+++|.| |....+..+. +|+.|.-...
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 45677899999999988777777777889999999887 4334444444 7777765443
No 68
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=40.09 E-value=15 Score=31.24 Aligned_cols=56 Identities=11% Similarity=-0.143 Sum_probs=41.3
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
.+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-..
T Consensus 107 ~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~ 163 (188)
T 1tk9_A 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163 (188)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCC
Confidence 4567899999999888766666677788999998877 4445555566777765443
No 69
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=39.78 E-value=14 Score=31.47 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEeccH
Q 017188 106 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 163 (375)
Q Consensus 106 ~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~~ 163 (375)
...+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-..
T Consensus 82 ~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 82 LANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAAT 140 (187)
T ss_dssp HHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCC
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecC
Confidence 345567899999998887666666667788899999887 3344444456677665443
No 70
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.43 E-value=16 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=17.9
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
....|..||++++.+.. +.+ ..-+|| .||-
T Consensus 2 ~iY~C~rCg~~fs~~el-~~l----P~IrCp--yCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQL-KVL----PGVRCP--YCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCCCS-CCC----SSSCCT--TTCC
T ss_pred cEEEeeccCCCccHHHH-hhC----CCcccC--ccCc
Confidence 45689999999876532 111 234798 8984
No 71
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=38.32 E-value=18 Score=38.97 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=37.3
Q ss_pred HhhcCCEEEEEccCccc-cccc-cchHhhh--cCCCeEEEECCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQI-TPAC-NLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V-~Pa~-~Lp~~a~--~~G~~lIiINlq~t~~d~~adl~I~ 160 (375)
.+.+||++|++|+-... .|.. .....++ ++|+++|+|++..|.....||++|.
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ 231 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGII 231 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEE
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEec
Confidence 56789999999986542 2321 1112233 4799999999999987778888765
No 72
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=37.25 E-value=20 Score=25.15 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.2
Q ss_pred ccccccCCCCCcccc
Q 017188 47 SFMEACPSCGSEYFR 61 (375)
Q Consensus 47 l~~~~C~~C~~~y~~ 61 (375)
|...+|..||..|+-
T Consensus 2 m~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDP 16 (46)
T ss_dssp CCCEEETTTCCEECG
T ss_pred CCEEECCCCCeEEeC
Confidence 567799999998863
No 73
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.36 E-value=23 Score=29.15 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=18.8
Q ss_pred ccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 47 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 47 l~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
+...+|.+||..| .+ . -..+.+|| .|++
T Consensus 65 v~p~~C~~CG~~F-~~----~---~~kPsrCP--~CkS 92 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-KA----E---INIPSRCP--KCKS 92 (105)
T ss_dssp ECCCBBTTTCCBC-CC----C---SSCCSSCS--SSCC
T ss_pred EECcChhhCcCee-cc----c---CCCCCCCc--CCCC
Confidence 3467899999987 21 1 12356899 7875
No 74
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.00 E-value=37 Score=28.62 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEe--cCCccccccCCCCCcccc
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAEL--HGNSFMEACPSCGSEYFR 61 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViEL--HGnl~~~~C~~C~~~y~~ 61 (375)
..++.|..|++.|.+..+-..| | ...+++ +..-....|..||+.+..
T Consensus 63 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 63 SVYRILNFLEKENFISVLETSK--------S---GRRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEEETT--------T---EEEEEESCSCCCEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEecCCCCceEEEECCCCCEEEe
Confidence 4588999999999987765543 1 124554 123356899999997654
No 75
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=34.00 E-value=15 Score=31.20 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=36.2
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEe
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIH 160 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~ 160 (375)
.+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.
T Consensus 76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~ 129 (186)
T 1m3s_A 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIR 129 (186)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEE
Confidence 3456799999998887665666667788899998887 3333444445565554
No 76
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=33.63 E-value=15 Score=36.00 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCCCcc--chhHHHH----HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCCCC------CCceEEEecc
Q 017188 95 DALPPK--EMNPAEK----HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD------KKASLVIHGF 162 (375)
Q Consensus 95 E~lP~~--~~~~A~~----~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~~d------~~adl~I~g~ 162 (375)
.+||+- ...+|++ +++++|++|.|.|-|.-.-..+|.- ...+++.|...|.... ....+.|-.+
T Consensus 251 GPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTd 326 (345)
T 3c2q_A 251 GPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGNLMP----SYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTD 326 (345)
T ss_dssp SCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHTTCC----TTSEEEEEESCHHHHHHHHHTCCSSEEEEESC
T ss_pred CCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcccCc----ccceEEEEECCHHHhhhhhccCceeEEEEEec
Confidence 467763 2333544 4568999999999887555555521 2345777777765432 3445788999
Q ss_pred HHHHHHHHHHHhc
Q 017188 163 VDKVVAGVMDLLN 175 (375)
Q Consensus 163 ~devL~~L~~~L~ 175 (375)
+..+++.|.+.|.
T Consensus 327 vg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 327 VGVFLVLLLKELE 339 (345)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 77
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=33.15 E-value=17 Score=31.26 Aligned_cols=58 Identities=12% Similarity=-0.038 Sum_probs=42.5
Q ss_pred HHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCC---ceEEEeccHH
Q 017188 107 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKK---ASLVIHGFVD 164 (375)
Q Consensus 107 ~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~---adl~I~g~~d 164 (375)
..+.+-|++|++-.|....-.......++++|+++|.| |....+.... +|+.|.-...
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 45677899999999988776667777889999999887 3333444456 7887765443
No 78
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=32.69 E-value=15 Score=31.00 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=38.9
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-.
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 456799999999887766667777788899998877 434444445566666544
No 79
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.67 E-value=22 Score=31.21 Aligned_cols=26 Identities=35% Similarity=0.758 Sum_probs=18.3
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...+|..||..|.. ..+..|| .||..
T Consensus 137 ~~~~C~~CG~i~~~----------~~p~~CP--~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD----------EAPEYCP--VCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES----------CCCSBCT--TTCCB
T ss_pred CeeEeCCCCCeeCC----------CCCCCCC--CCCCC
Confidence 35779999998851 1234898 89854
No 80
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.69 E-value=27 Score=26.60 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=18.7
Q ss_pred cccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCc
Q 017188 48 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 84 (375)
Q Consensus 48 ~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG 84 (375)
....|..||.++... .....+|+ .||.
T Consensus 27 v~Y~C~~CG~~~e~~--------~~d~irCp--~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS--------RTDAVRCK--DCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC--------TTSTTCCS--SSCC
T ss_pred EEEECCCCCCcceeC--------CCCCccCC--CCCc
Confidence 456899999986443 12245899 8997
No 81
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=30.55 E-value=14 Score=32.18 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=39.0
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
+.+-|++|++-.|....-...+...++++|+++|.| |....+....+|+.|.-.
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~ 141 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVK 141 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEEC
Confidence 456799999999888766667777788899999887 333444445667776543
No 82
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.75 E-value=33 Score=28.86 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=37.8
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEecc
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 162 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g~ 162 (375)
+.+-|++|++-.|....-.......++++|+++|.| |.... ....+|..|.-.
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeC
Confidence 456799999998887666666667788899998877 33334 666677776543
No 83
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=29.65 E-value=18 Score=31.21 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=38.9
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCCCCCCCceEEEec
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHG 161 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t~~d~~adl~I~g 161 (375)
.+.+-|++|++-.|............++++|+++|.| +....+....+|+.|.-
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 4566799999988887766667777788899999888 33444444556666643
No 84
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.18 E-value=22 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=19.2
Q ss_pred ccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 47 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 47 l~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
+...+|..||..|..+ +.+..|| .||..
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~CP--~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELCP--ACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBCT--TTCCB
T ss_pred CceEEECCCCCEeeCC---------CCCCCCC--CCcCC
Confidence 3468999999987522 1123798 89864
No 85
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.04 E-value=49 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEecC--CccccccCCCCCcccch
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHG--NSFMEACPSCGSEYFRD 62 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELHG--nl~~~~C~~C~~~y~~d 62 (375)
..++.|..|++.|.+..+-..| | ...+++.. .-....|..||+.+..+
T Consensus 55 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 55 TVYRVLTQFEAAGLVVRHNFDG--------G---HAVFELADSGHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp HHHHHHHHHHHHTSEEEECSSS--------S---SCEEEESSSCCCEEEEETTTCCEEEEC
T ss_pred HHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEeCCCCcceEEEECCCCCEEEec
Confidence 3578899999999876653221 2 23466521 23468999999976543
No 86
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=28.89 E-value=77 Score=27.39 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=44.5
Q ss_pred chhHHHHHhhcCCEEEEE-----ccCccccccccchHhhhcCCCeEEEECCCCC----------------------CC--
Q 017188 101 EMNPAEKHCKIADVVLCL-----GTSLQITPACNLPLKCLRGGGKIVIVNLQKT----------------------PK-- 151 (375)
Q Consensus 101 ~~~~A~~~i~~aDLlLVL-----GTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t----------------------~~-- 151 (375)
.++.-.+++.+||++|.+ |.....--+..+ -.|...|.|++.+..+.- +.
T Consensus 57 i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEi-GyA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NL 135 (161)
T 2f62_A 57 IRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEV-GCAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNL 135 (161)
T ss_dssp HHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHH-HHHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCG
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHH-HHHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchh
Confidence 345556788999999999 444332223333 346678999999875421 11
Q ss_pred --CCCceEEEeccHHHHHHHHHHHhc
Q 017188 152 --DKKASLVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 152 --d~~adl~I~g~~devL~~L~~~L~ 175 (375)
..... +..+.++++..|.++|.
T Consensus 136 Ml~~~~~--~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 136 MLYDGVE--VFDSFESAFKYFLANFP 159 (161)
T ss_dssp GGCCSSC--EESSHHHHHHHHHHHSC
T ss_pred hhhhhhe--eeCCHHHHHHHHHHhhc
Confidence 11112 66788888888877653
No 87
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=28.67 E-value=75 Score=30.55 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=52.8
Q ss_pred ccEEEcCCCCCc--cchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCC-CC---CCCCCceEEEec
Q 017188 88 DTVLDWEDALPP--KEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KT---PKDKKASLVIHG 161 (375)
Q Consensus 88 P~VVlFGE~lP~--~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq-~t---~~d~~adl~I~g 161 (375)
|++..|++-=.. ...+.+.+.+.++|++||||..-. .-..+|...+++.|.+.+.|.-. .- -+.....+.|-+
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITA 262 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISA 262 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEee
Confidence 566655443222 123445566678999999998422 44557777777778888888543 22 233445566654
Q ss_pred ---cHHHHHHHHHHHhc
Q 017188 162 ---FVDKVVAGVMDLLN 175 (375)
Q Consensus 162 ---~~devL~~L~~~L~ 175 (375)
..+.+++++.+.|.
T Consensus 263 GASTP~~li~eVi~~l~ 279 (297)
T 3dnf_A 263 GASTPDWIIEQVKSRIQ 279 (297)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 34567777776653
No 88
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=25.68 E-value=19 Score=32.28 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=38.2
Q ss_pred hhcCCEEEEEccCccccccccchHhhhcCCCeEEEE-CCCCC-----------CCCCCceEEEe
Q 017188 109 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKT-----------PKDKKASLVIH 160 (375)
Q Consensus 109 i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiI-Nlq~t-----------~~d~~adl~I~ 160 (375)
+.+-|++|++-.|....-...+...++++|+++|.| |.... +....+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 456799999999988776667777888999999887 33222 44566777764
No 89
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.39 E-value=56 Score=20.45 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=23.3
Q ss_pred ecCCccccccCCCCCcccchhhhh---hhcccCcCCCCCCcCCC
Q 017188 43 LHGNSFMEACPSCGSEYFRDFEVE---TIGLKETSRRCSDLKCG 83 (375)
Q Consensus 43 LHGnl~~~~C~~C~~~y~~d~~v~---~i~~~~~~P~Cp~~~Cg 83 (375)
.|-.-....|..|++.|.....+. .....+....|+ .||
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~cg 45 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP--SSG 45 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC--CCC
T ss_pred CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc--CCC
Confidence 355555678999999886543221 112233456787 776
No 90
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=25.21 E-value=1.6e+02 Score=27.21 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=49.5
Q ss_pred EEEcCCCCCccchhHHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCCCC--C-CCC------------
Q 017188 90 VLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP--K-DKK------------ 154 (375)
Q Consensus 90 VVlFGE~lP~~~~~~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~t~--~-d~~------------ 154 (375)
|+.|...++.+ ...+.+..||+++. +|. ..++..-+..|...|.|+|.-|....+ . +..
T Consensus 255 vv~~~g~~~~~---~~~~~~~~adv~v~--pS~-~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~ 328 (413)
T 3oy2_A 255 IMINRTVLTDE---RVDMMYNACDVIVN--CSS-GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISV 328 (413)
T ss_dssp EEEECSCCCHH---HHHHHHHHCSEEEE--CCS-CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEEC
T ss_pred eeeccCcCCHH---HHHHHHHhCCEEEe--CCC-cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCccccccccccccc
Confidence 67777777753 34567789998877 443 233333344677899999887764321 1 111
Q ss_pred ----ce--EEEeccHHHHHHHHHHHhc
Q 017188 155 ----AS--LVIHGFVDKVVAGVMDLLN 175 (375)
Q Consensus 155 ----ad--l~I~g~~devL~~L~~~L~ 175 (375)
.- ++-.++.+++...| +.+.
T Consensus 329 ~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 329 DDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp TTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred ccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 11 55567888888888 7665
No 91
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.81 E-value=70 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEec--CCccccccCCCCCcccc
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFR 61 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELH--Gnl~~~~C~~C~~~y~~ 61 (375)
..++.|..|++.|.+..+-..| | ...+++. ..-....|..||+.+..
T Consensus 54 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 54 TVYRVLNQFDDAGIVTRHHFEG--------G---KSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEECGG--------G---CEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEecCCCceeEEEECCCCCEEEe
Confidence 4688999999999877654321 1 1345542 22346899999997654
No 92
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.81 E-value=29 Score=30.86 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=38.6
Q ss_pred HhhcCCEEEEEccCccccccccchHhhhc--CCCeEEEE-CCCCCCCCCCceEEEec
Q 017188 108 HCKIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIV-NLQKTPKDKKASLVIHG 161 (375)
Q Consensus 108 ~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~--~G~~lIiI-Nlq~t~~d~~adl~I~g 161 (375)
.+.+-|++|++-.|....-.......+++ +|+++|.| |....+....+|+.|.-
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 45677999999888876666666677888 99999887 44444544556666653
No 93
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=23.43 E-value=62 Score=31.53 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=45.5
Q ss_pred HHHHHhhcCCEEEEEccCccccccccchHhhhcCCCeEEEECCCC-CC---CCCCceEEEec---cHHHHHHHHHHHhc
Q 017188 104 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK-TP---KDKKASLVIHG---FVDKVVAGVMDLLN 175 (375)
Q Consensus 104 ~A~~~i~~aDLlLVLGTSL~V~Pa~~Lp~~a~~~G~~lIiINlq~-t~---~d~~adl~I~g---~~devL~~L~~~L~ 175 (375)
.+.+.+.++|++||||..-. .-..+|...+++.|.+.+.|.-.. -. +.....+.|-+ ..+.+++++.+.|.
T Consensus 218 av~~lA~~vD~miVVGg~nS-SNT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~l~ 295 (328)
T 3szu_A 218 AVRALAEQAEVVLVVGSKNS-SNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQ 295 (328)
T ss_dssp HHHHHHHHCSEEEEECCTTC-HHHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEeCCCCC-chHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHHH
Confidence 34455678999999998522 445677777888888888885432 22 23444566654 34556677766654
No 94
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.40 E-value=53 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.740 Sum_probs=18.6
Q ss_pred ccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 49 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 49 ~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
...|..||.+...+ ....-+|+ .||..
T Consensus 21 ~Y~C~~Cg~~~~l~--------~~~~iRC~--~CG~R 47 (63)
T 3h0g_L 21 IYLCADCGARNTIQ--------AKEVIRCR--ECGHR 47 (63)
T ss_dssp CCBCSSSCCBCCCC--------SSSCCCCS--SSCCC
T ss_pred EEECCCCCCeeecC--------CCCceECC--CCCcE
Confidence 47899999976533 12345898 89974
No 95
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.98 E-value=81 Score=22.75 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.9
Q ss_pred ccccccCCCCCcccc
Q 017188 47 SFMEACPSCGSEYFR 61 (375)
Q Consensus 47 l~~~~C~~C~~~y~~ 61 (375)
|.+.+|..||..|+-
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 356789999998864
No 96
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.47 E-value=42 Score=30.90 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=26.9
Q ss_pred CeEEecCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 39 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 39 kViELHGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
-|+.++|. .|..|+-..+..... .+...+.+..|| +||-.
T Consensus 192 avv~v~~~----~C~GC~~~lppq~~~-~i~~~~~Iv~Cp--~CgRI 231 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDKIYT-EVLTSGDMITCP--YCGRI 231 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHHHHH-HHHHSSSCEECT--TTCCE
T ss_pred eEEEeeCC----ccCCCCeeeCHHHHH-HHHCCCCEEECC--CCCee
Confidence 48888875 899999877655332 222234567899 89954
No 97
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.17 E-value=84 Score=25.54 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCcchhHhhcCCCCCCeEEec--CCccccccCCCCCcccc
Q 017188 4 MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFR 61 (375)
Q Consensus 4 ~aH~aLa~Lek~G~l~~VITQNIDGLH~kAG~p~~kViELH--Gnl~~~~C~~C~~~y~~ 61 (375)
..++.|..|++.|.+..+-..| | ...+|+. +.-....|..||+.+..
T Consensus 47 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 47 TVYRTLQSMASSGLVDTLHTDT--------G---ESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp HHHHHHHHHHTTTSEEEEECTT--------S---CEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHCCCEEEEEeCC--------C---ceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 4688999999999877664433 2 2345542 23456889999996654
No 98
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.01 E-value=46 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.8
Q ss_pred ccccccCCCCCcccc
Q 017188 47 SFMEACPSCGSEYFR 61 (375)
Q Consensus 47 l~~~~C~~C~~~y~~ 61 (375)
|.+.+|..||..|+-
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 346789999998864
No 99
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.90 E-value=47 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=23.7
Q ss_pred cCCccccccCCCCCcccchhhhhhhcccCcCCCCCCcCCCcc
Q 017188 44 HGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 85 (375)
Q Consensus 44 HGnl~~~~C~~C~~~y~~d~~v~~i~~~~~~P~Cp~~~CgG~ 85 (375)
|-.-....|..|++.|.....+..+...+.+-.|+ .||..
T Consensus 9 H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~--~C~k~ 48 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCT--FCHTE 48 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCS--SSCCB
T ss_pred cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECC--CCCCc
Confidence 43334578999999886543333332223345788 79854
No 100
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.77 E-value=50 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=11.9
Q ss_pred ccccccCCCCCcccc
Q 017188 47 SFMEACPSCGSEYFR 61 (375)
Q Consensus 47 l~~~~C~~C~~~y~~ 61 (375)
|.+.+|..||..|+-
T Consensus 1 m~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 1 MDIYVCTVCGYEYDP 15 (52)
T ss_dssp CCCEECSSSCCCCCT
T ss_pred CCcEEeCCCCeEEcC
Confidence 356789999999863
Done!