Query 017189
Match_columns 375
No_of_seqs 252 out of 1777
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02988 3-hydroxyisobutyryl-C 100.0 9.1E-73 2E-77 553.5 40.0 368 8-375 8-381 (381)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 9.3E-72 2E-76 547.7 40.1 361 8-371 41-406 (407)
3 PLN02157 3-hydroxyisobutyryl-C 100.0 3.3E-70 7.2E-75 537.0 38.2 357 8-365 36-397 (401)
4 PLN02874 3-hydroxyisobutyryl-C 100.0 4.1E-70 8.8E-75 536.7 38.5 356 7-364 9-367 (379)
5 KOG1684 Enoyl-CoA hydratase [L 100.0 1.3E-67 2.8E-72 492.0 29.9 352 8-364 37-396 (401)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 1.4E-65 3.1E-70 498.7 34.4 333 9-350 3-342 (342)
7 PRK05862 enoyl-CoA hydratase; 100.0 7.5E-55 1.6E-59 409.0 29.1 254 8-334 3-257 (257)
8 PRK06127 enoyl-CoA hydratase; 100.0 1.8E-54 3.8E-59 409.0 29.6 262 1-334 3-269 (269)
9 PRK05809 3-hydroxybutyryl-CoA 100.0 1.7E-54 3.8E-59 407.3 29.0 255 7-333 2-259 (260)
10 PRK09674 enoyl-CoA hydratase-i 100.0 1.7E-54 3.7E-59 406.1 28.8 252 9-333 2-254 (255)
11 PRK08150 enoyl-CoA hydratase; 100.0 1.7E-54 3.7E-59 405.9 28.7 252 9-334 2-255 (255)
12 PRK09076 enoyl-CoA hydratase; 100.0 2.3E-54 4.9E-59 405.9 29.3 252 9-333 3-257 (258)
13 PRK08139 enoyl-CoA hydratase; 100.0 4.2E-54 9.1E-59 405.7 29.6 261 1-334 2-266 (266)
14 PRK06142 enoyl-CoA hydratase; 100.0 2.6E-54 5.7E-59 408.6 28.2 254 8-333 5-272 (272)
15 PRK05980 enoyl-CoA hydratase; 100.0 3.2E-54 7E-59 405.5 28.5 250 10-331 4-260 (260)
16 KOG1680 Enoyl-CoA hydratase [L 100.0 3.2E-55 6.8E-60 397.9 20.4 250 11-333 39-289 (290)
17 PRK07658 enoyl-CoA hydratase; 100.0 3.4E-54 7.4E-59 404.7 28.2 251 10-333 3-256 (257)
18 PRK08140 enoyl-CoA hydratase; 100.0 5.7E-54 1.2E-58 404.2 29.1 253 8-333 3-261 (262)
19 PRK07799 enoyl-CoA hydratase; 100.0 5.5E-54 1.2E-58 404.5 28.8 254 8-334 4-263 (263)
20 PRK06563 enoyl-CoA hydratase; 100.0 4.2E-54 9.1E-59 403.5 27.5 251 11-333 1-254 (255)
21 TIGR02280 PaaB1 phenylacetate 100.0 5.6E-54 1.2E-58 402.9 28.2 250 11-333 1-255 (256)
22 PRK08258 enoyl-CoA hydratase; 100.0 9.7E-54 2.1E-58 405.5 29.8 252 10-333 18-276 (277)
23 PRK08138 enoyl-CoA hydratase; 100.0 9.8E-54 2.1E-58 402.3 29.6 253 8-333 6-260 (261)
24 PLN02600 enoyl-CoA hydratase 100.0 5E-54 1.1E-58 401.9 27.2 247 16-334 2-251 (251)
25 PRK07657 enoyl-CoA hydratase; 100.0 8E-54 1.7E-58 402.7 28.6 254 9-334 3-260 (260)
26 PRK09245 enoyl-CoA hydratase; 100.0 9.4E-54 2E-58 403.6 28.4 252 10-333 4-265 (266)
27 PRK06494 enoyl-CoA hydratase; 100.0 1.2E-53 2.6E-58 401.3 28.9 253 7-333 2-258 (259)
28 PRK05995 enoyl-CoA hydratase; 100.0 1.1E-53 2.4E-58 402.2 28.4 255 7-334 2-262 (262)
29 PRK08252 enoyl-CoA hydratase; 100.0 1.4E-53 3.1E-58 399.6 28.9 249 10-333 4-253 (254)
30 PLN02664 enoyl-CoA hydratase/d 100.0 1E-53 2.3E-58 404.9 27.4 252 10-333 9-274 (275)
31 PRK05981 enoyl-CoA hydratase; 100.0 1.9E-53 4.1E-58 401.6 28.7 255 7-333 2-265 (266)
32 PRK07659 enoyl-CoA hydratase; 100.0 2.9E-53 6.3E-58 398.9 27.4 253 7-333 4-259 (260)
33 PRK07468 enoyl-CoA hydratase; 100.0 4.3E-53 9.4E-58 398.1 28.3 253 8-333 3-261 (262)
34 PRK07511 enoyl-CoA hydratase; 100.0 5.1E-53 1.1E-57 397.3 28.7 251 10-332 4-259 (260)
35 PRK06688 enoyl-CoA hydratase; 100.0 4.6E-53 9.9E-58 397.5 28.2 254 8-333 4-258 (259)
36 TIGR03210 badI 2-ketocyclohexa 100.0 4E-53 8.7E-58 396.9 27.6 252 8-333 1-255 (256)
37 PRK05674 gamma-carboxygeranoyl 100.0 3.5E-53 7.5E-58 399.2 26.6 254 7-333 3-263 (265)
38 PRK03580 carnitinyl-CoA dehydr 100.0 7.6E-53 1.7E-57 396.2 28.5 251 10-333 4-260 (261)
39 TIGR01929 menB naphthoate synt 100.0 5.5E-53 1.2E-57 396.6 27.3 252 9-333 2-258 (259)
40 PRK06210 enoyl-CoA hydratase; 100.0 6.6E-53 1.4E-57 399.1 27.8 256 6-333 2-271 (272)
41 PRK07327 enoyl-CoA hydratase; 100.0 7.3E-53 1.6E-57 397.7 27.6 252 6-333 8-267 (268)
42 PRK06495 enoyl-CoA hydratase; 100.0 1.2E-52 2.6E-57 394.0 28.0 251 7-333 2-256 (257)
43 PRK09120 p-hydroxycinnamoyl Co 100.0 1.8E-52 3.8E-57 396.3 29.1 249 6-325 5-262 (275)
44 PRK11423 methylmalonyl-CoA dec 100.0 1.6E-52 3.4E-57 393.9 27.9 254 7-333 2-260 (261)
45 PRK08260 enoyl-CoA hydratase; 100.0 1.5E-52 3.3E-57 400.9 27.8 254 8-334 3-278 (296)
46 PRK05864 enoyl-CoA hydratase; 100.0 2.1E-52 4.6E-57 396.2 27.6 257 6-334 6-275 (276)
47 PRK06072 enoyl-CoA hydratase; 100.0 4E-52 8.6E-57 388.5 28.4 247 11-334 2-248 (248)
48 PRK06144 enoyl-CoA hydratase; 100.0 2.8E-52 6.1E-57 392.5 27.5 250 8-333 7-261 (262)
49 PRK07396 dihydroxynaphthoic ac 100.0 3.9E-52 8.4E-57 393.7 28.4 255 7-334 11-269 (273)
50 PRK06143 enoyl-CoA hydratase; 100.0 2.9E-52 6.4E-57 391.0 27.2 245 9-325 6-254 (256)
51 PRK07509 enoyl-CoA hydratase; 100.0 4.6E-52 1E-56 391.3 28.4 251 8-332 2-261 (262)
52 PRK07260 enoyl-CoA hydratase; 100.0 6.6E-52 1.4E-56 388.7 26.8 247 8-325 1-253 (255)
53 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.2E-51 2.5E-56 385.7 27.8 246 11-333 3-250 (251)
54 PRK08259 enoyl-CoA hydratase; 100.0 8.9E-52 1.9E-56 387.3 26.3 248 9-329 3-251 (254)
55 PLN02888 enoyl-CoA hydratase 100.0 2E-51 4.4E-56 387.0 28.7 253 8-332 8-262 (265)
56 PRK07827 enoyl-CoA hydratase; 100.0 1.5E-51 3.3E-56 387.2 27.7 251 8-332 5-259 (260)
57 PRK06023 enoyl-CoA hydratase; 100.0 1.2E-51 2.5E-56 386.1 26.6 244 10-325 4-251 (251)
58 PRK07854 enoyl-CoA hydratase; 100.0 2.8E-51 6E-56 381.5 27.8 240 11-333 2-242 (243)
59 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.2E-51 4.7E-56 385.6 27.3 251 7-331 3-257 (257)
60 PRK05870 enoyl-CoA hydratase; 100.0 1.2E-51 2.7E-56 385.5 25.1 244 9-325 3-249 (249)
61 PLN02921 naphthoate synthase 100.0 6.8E-51 1.5E-55 392.5 28.6 254 7-333 63-322 (327)
62 PRK12478 enoyl-CoA hydratase; 100.0 2.9E-51 6.4E-56 391.7 24.9 254 7-336 3-283 (298)
63 PRK07112 polyketide biosynthes 100.0 1E-50 2.3E-55 380.4 27.0 249 7-333 2-254 (255)
64 PF00378 ECH: Enoyl-CoA hydrat 100.0 7E-51 1.5E-55 379.6 24.6 243 12-325 1-245 (245)
65 PRK07938 enoyl-CoA hydratase; 100.0 1.2E-50 2.6E-55 378.6 26.1 240 14-329 7-249 (249)
66 PRK08321 naphthoate synthase; 100.0 3.2E-50 6.9E-55 385.4 27.4 254 8-334 22-298 (302)
67 PRK06190 enoyl-CoA hydratase; 100.0 1.2E-49 2.5E-54 373.5 27.7 234 7-308 2-236 (258)
68 PRK07110 polyketide biosynthes 100.0 1.1E-49 2.3E-54 372.3 27.2 243 7-321 3-246 (249)
69 PLN03214 probable enoyl-CoA hy 100.0 8E-50 1.7E-54 378.4 25.4 247 7-325 9-263 (278)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 1.8E-48 3.8E-53 395.8 26.1 253 11-335 260-545 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.4E-48 5.1E-53 396.1 25.3 256 8-335 259-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 6.6E-47 1.4E-51 347.4 22.5 212 8-287 2-220 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 1.8E-46 4E-51 357.2 24.7 231 7-306 2-257 (288)
74 PRK11730 fadB multifunctional 100.0 2.1E-45 4.6E-50 387.9 27.7 283 10-325 7-296 (715)
75 KOG1679 Enoyl-CoA hydratase [L 100.0 3E-46 6.5E-51 326.0 16.2 255 10-334 28-291 (291)
76 PRK08272 enoyl-CoA hydratase; 100.0 4.1E-45 8.8E-50 350.5 25.7 214 5-288 6-246 (302)
77 PRK08788 enoyl-CoA hydratase; 100.0 1.4E-44 2.9E-49 342.8 27.6 242 10-322 18-274 (287)
78 PRK06213 enoyl-CoA hydratase; 100.0 3.4E-45 7.5E-50 337.9 22.6 224 9-302 3-228 (229)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 5.8E-44 1.3E-48 342.0 25.4 269 19-325 38-328 (360)
80 PRK11154 fadJ multifunctional 100.0 7E-44 1.5E-48 376.3 28.4 279 10-325 6-294 (708)
81 KOG1681 Enoyl-CoA isomerase [L 100.0 8.3E-45 1.8E-49 319.7 14.9 255 8-332 18-290 (292)
82 TIGR02440 FadJ fatty oxidation 100.0 2.7E-43 5.8E-48 371.1 26.1 275 14-325 6-289 (699)
83 TIGR02437 FadB fatty oxidation 100.0 2.8E-42 6E-47 363.6 28.4 284 10-325 7-297 (714)
84 PLN02267 enoyl-CoA hydratase/i 100.0 1.3E-41 2.8E-46 315.7 22.9 179 11-190 2-188 (239)
85 COG0447 MenB Dihydroxynaphthoi 100.0 1.2E-42 2.7E-47 303.8 12.5 251 7-332 16-276 (282)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.2E-40 2.6E-45 351.9 28.2 291 6-325 10-321 (737)
87 KOG1682 Enoyl-CoA isomerase [L 100.0 6.3E-41 1.4E-45 290.5 19.3 252 10-334 33-287 (287)
88 KOG0016 Enoyl-CoA hydratase/is 100.0 3.3E-40 7.1E-45 297.2 21.9 248 6-323 4-261 (266)
89 cd06558 crotonase-like Crotona 100.0 6.7E-39 1.5E-43 288.3 20.6 182 11-192 1-186 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 4.3E-38 9.3E-43 319.9 23.2 187 6-192 8-217 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.4E-37 7.3E-42 314.3 23.1 187 6-192 12-221 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 2.4E-23 5.2E-28 171.9 10.6 115 228-349 4-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 2.7E-19 5.8E-24 158.8 11.4 140 36-190 22-172 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 4.3E-18 9.2E-23 152.4 13.4 146 20-190 2-169 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 7.7E-16 1.7E-20 140.4 11.0 157 18-189 1-205 (211)
96 cd00394 Clp_protease_like Case 99.6 3.9E-14 8.4E-19 123.6 12.2 134 33-184 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.5 1.4E-13 3E-18 125.9 13.6 96 25-136 13-109 (214)
98 TIGR00705 SppA_67K signal pept 99.5 1.4E-13 3.1E-18 142.7 11.6 155 15-187 306-511 (584)
99 cd07023 S49_Sppa_N_C Signal pe 99.5 2.8E-13 6.2E-18 123.3 12.2 154 19-189 2-202 (208)
100 cd07016 S14_ClpP_1 Caseinolyti 99.4 7E-13 1.5E-17 115.7 11.1 128 36-184 15-160 (160)
101 TIGR00706 SppA_dom signal pept 99.4 7.9E-12 1.7E-16 113.7 14.0 148 19-190 2-198 (207)
102 cd07018 S49_SppA_67K_type Sign 99.2 4.4E-11 9.6E-16 110.0 10.7 142 33-190 26-216 (222)
103 cd07021 Clp_protease_NfeD_like 99.2 2.3E-10 4.9E-15 101.4 13.5 140 20-187 2-171 (178)
104 cd07015 Clp_protease_NfeD Nodu 98.7 3.5E-07 7.5E-12 80.5 13.3 136 33-187 10-165 (172)
105 cd07013 S14_ClpP Caseinolytic 98.6 7.4E-07 1.6E-11 77.9 12.0 134 33-184 9-162 (162)
106 KOG1683 Hydroxyacyl-CoA dehydr 98.6 2.2E-08 4.9E-13 95.8 2.0 167 18-187 66-240 (380)
107 PRK00277 clpP ATP-dependent Cl 98.5 1E-06 2.2E-11 79.6 11.9 138 32-187 39-196 (200)
108 PRK10949 protease 4; Provision 98.5 2.5E-06 5.5E-11 89.2 15.3 157 16-190 325-532 (618)
109 PRK12553 ATP-dependent Clp pro 98.4 4.5E-06 9.8E-11 75.9 13.3 136 32-187 43-202 (207)
110 PRK12319 acetyl-CoA carboxylas 98.4 8.1E-05 1.8E-09 69.6 20.0 138 30-188 76-215 (256)
111 cd07017 S14_ClpP_2 Caseinolyti 98.3 5.8E-06 1.3E-10 72.9 11.2 134 33-184 18-171 (171)
112 CHL00198 accA acetyl-CoA carbo 98.3 3.7E-05 8.1E-10 73.7 16.2 139 30-187 132-270 (322)
113 PF00574 CLP_protease: Clp pro 98.3 5.2E-06 1.1E-10 73.8 9.8 142 21-187 18-181 (182)
114 PRK14512 ATP-dependent Clp pro 98.2 2.4E-05 5.2E-10 70.5 12.6 137 33-187 32-188 (197)
115 PLN03230 acetyl-coenzyme A car 98.2 0.00022 4.8E-09 70.2 19.9 136 31-187 200-337 (431)
116 CHL00028 clpP ATP-dependent Cl 98.2 5.4E-05 1.2E-09 68.3 13.9 136 33-188 39-197 (200)
117 TIGR00493 clpP ATP-dependent C 98.1 6.2E-05 1.3E-09 67.6 13.4 136 33-186 35-190 (191)
118 PLN03229 acetyl-coenzyme A car 98.1 0.00011 2.3E-09 76.7 16.6 139 30-187 220-358 (762)
119 PRK05724 acetyl-CoA carboxylas 98.1 0.00012 2.6E-09 70.3 15.9 139 30-187 129-267 (319)
120 TIGR00513 accA acetyl-CoA carb 98.1 0.00015 3.2E-09 69.6 16.4 137 30-187 129-267 (316)
121 PRK11778 putative inner membra 98.0 0.00013 2.8E-09 70.6 13.1 156 16-190 89-289 (330)
122 COG0616 SppA Periplasmic serin 98.0 8.8E-05 1.9E-09 71.8 12.1 136 38-190 82-265 (317)
123 TIGR03133 malonate_beta malona 97.9 0.00044 9.5E-09 65.2 14.9 149 20-189 62-219 (274)
124 PRK14514 ATP-dependent Clp pro 97.9 0.00026 5.5E-09 64.8 12.9 136 32-187 62-219 (221)
125 PRK14513 ATP-dependent Clp pro 97.8 0.00039 8.5E-09 62.7 13.1 136 32-189 35-194 (201)
126 PRK12551 ATP-dependent Clp pro 97.8 0.00043 9.3E-09 62.3 12.9 136 33-188 34-191 (196)
127 PRK07189 malonate decarboxylas 97.8 0.0015 3.2E-08 62.4 16.5 150 19-189 70-228 (301)
128 PRK05654 acetyl-CoA carboxylas 97.7 0.0026 5.7E-08 60.7 16.4 151 16-192 119-271 (292)
129 TIGR03134 malonate_gamma malon 97.6 0.0027 5.8E-08 58.9 15.7 154 17-189 31-191 (238)
130 PF01972 SDH_sah: Serine dehyd 97.6 0.00065 1.4E-08 63.3 10.3 95 31-146 70-164 (285)
131 TIGR00705 SppA_67K signal pept 97.5 0.0012 2.5E-08 69.3 12.9 84 37-135 77-160 (584)
132 PF01343 Peptidase_S49: Peptid 97.5 0.00015 3.3E-09 62.7 5.2 94 97-190 3-143 (154)
133 TIGR00515 accD acetyl-CoA carb 97.4 0.0074 1.6E-07 57.4 15.3 147 20-192 123-270 (285)
134 COG1030 NfeD Membrane-bound se 97.3 0.0053 1.1E-07 61.0 13.5 147 16-187 25-188 (436)
135 CHL00174 accD acetyl-CoA carbo 97.2 0.021 4.5E-07 54.4 16.5 143 19-192 135-284 (296)
136 TIGR01117 mmdA methylmalonyl-C 97.2 0.013 2.7E-07 60.5 15.8 153 22-191 319-485 (512)
137 PF01039 Carboxyl_trans: Carbo 97.2 0.0083 1.8E-07 61.7 14.4 133 25-189 65-207 (493)
138 COG0740 ClpP Protease subunit 97.1 0.012 2.6E-07 52.7 12.4 142 22-189 30-194 (200)
139 PRK12552 ATP-dependent Clp pro 97.0 0.017 3.7E-07 52.9 12.9 142 33-187 49-214 (222)
140 PRK10949 protease 4; Provision 97.0 0.011 2.4E-07 62.2 13.2 85 37-136 96-180 (618)
141 PLN02820 3-methylcrotonyl-CoA 96.6 0.035 7.6E-07 57.8 13.6 137 25-189 137-281 (569)
142 TIGR01117 mmdA methylmalonyl-C 96.5 0.038 8.3E-07 57.0 12.9 128 29-189 94-230 (512)
143 COG4799 Acetyl-CoA carboxylase 96.3 0.049 1.1E-06 55.7 12.2 196 25-252 99-313 (526)
144 COG0825 AccA Acetyl-CoA carbox 95.9 0.0099 2.1E-07 55.8 4.2 91 88-187 176-266 (317)
145 COG0777 AccD Acetyl-CoA carbox 95.5 0.38 8.2E-06 45.0 13.1 147 19-191 124-271 (294)
146 PF01039 Carboxyl_trans: Carbo 94.8 0.36 7.8E-06 49.7 12.0 154 21-191 297-468 (493)
147 PLN02820 3-methylcrotonyl-CoA 93.7 0.82 1.8E-05 47.8 12.0 143 31-190 380-543 (569)
148 PLN02157 3-hydroxyisobutyryl-C 93.4 0.13 2.9E-06 51.4 5.4 67 263-335 228-297 (401)
149 KOG0840 ATP-dependent Clp prot 90.9 1.4 3E-05 40.9 8.4 132 33-187 101-257 (275)
150 PF06833 MdcE: Malonate decarb 76.3 34 0.00074 31.6 10.4 144 30-188 40-188 (234)
151 COG4799 Acetyl-CoA carboxylase 75.2 18 0.00039 37.4 9.2 156 22-190 328-497 (526)
152 PF02601 Exonuc_VII_L: Exonucl 73.2 7.8 0.00017 37.4 5.9 80 34-131 53-136 (319)
153 COG0074 SucD Succinyl-CoA synt 71.2 13 0.00028 35.3 6.5 53 41-112 188-240 (293)
154 PF13607 Succ_CoA_lig: Succiny 70.5 11 0.00024 31.9 5.5 51 40-111 41-92 (138)
155 KOG0540 3-Methylcrotonyl-CoA c 66.5 48 0.001 33.6 9.6 150 21-190 352-510 (536)
156 PLN02522 ATP citrate (pro-S)-l 62.9 19 0.00041 38.1 6.5 52 41-112 210-262 (608)
157 COG1570 XseA Exonuclease VII, 62.7 15 0.00032 37.2 5.4 79 36-131 176-254 (440)
158 smart00250 PLEC Plectin repeat 57.4 8.1 0.00018 24.8 1.8 19 165-183 17-35 (38)
159 PTZ00187 succinyl-CoA syntheta 56.8 29 0.00063 33.7 6.2 53 41-112 212-264 (317)
160 PRK00286 xseA exodeoxyribonucl 55.9 23 0.00051 35.8 5.7 79 34-131 174-253 (438)
161 TIGR00237 xseA exodeoxyribonuc 55.7 24 0.00052 35.8 5.7 80 34-131 168-248 (432)
162 PF00549 Ligase_CoA: CoA-ligas 49.8 37 0.00081 29.2 5.2 57 40-113 60-121 (153)
163 PF00681 Plectin: Plectin repe 44.8 9.9 0.00021 25.4 0.7 19 165-183 17-35 (45)
164 TIGR00377 ant_ant_sig anti-ant 42.6 85 0.0018 24.3 6.0 49 10-63 4-52 (108)
165 PLN00125 Succinyl-CoA ligase [ 40.9 73 0.0016 30.7 6.2 13 100-112 233-245 (300)
166 PF01740 STAS: STAS domain; I 40.7 1.2E+02 0.0025 24.0 6.7 48 11-63 2-57 (117)
167 TIGR02717 AcCoA-syn-alpha acet 40.1 34 0.00073 34.8 4.0 83 39-142 189-271 (447)
168 TIGR02886 spore_II_AA anti-sig 38.3 1.5E+02 0.0032 23.0 6.8 50 12-66 2-51 (106)
169 PRK06091 membrane protein FdrA 35.6 1.1E+02 0.0023 32.2 6.7 22 91-112 270-291 (555)
170 TIGR01019 sucCoAalpha succinyl 33.8 1.1E+02 0.0025 29.1 6.3 52 40-112 185-237 (286)
171 PRK05678 succinyl-CoA syntheta 33.2 1.2E+02 0.0026 29.1 6.3 14 99-112 226-239 (291)
172 COG3660 Predicted nucleoside-d 28.4 2E+02 0.0044 27.4 6.6 111 20-132 130-255 (329)
173 COG0793 Prc Periplasmic protea 25.8 81 0.0018 31.7 3.9 90 19-115 205-302 (406)
174 PRK14053 methyltransferase; Pr 24.5 94 0.002 27.6 3.5 66 13-78 18-90 (194)
175 cd07043 STAS_anti-anti-sigma_f 23.5 1.9E+02 0.0042 21.5 5.0 45 13-63 3-47 (99)
176 PF14842 FliG_N: FliG N-termin 23.1 1.3E+02 0.0029 24.0 4.0 85 160-251 12-100 (108)
177 COG4565 CitB Response regulato 22.8 2.4E+02 0.0052 25.9 5.9 58 142-199 55-116 (224)
178 PF01990 ATP-synt_F: ATP synth 22.2 3E+02 0.0066 21.1 5.8 52 38-111 27-79 (95)
179 PF04208 MtrA: Tetrahydrometha 22.1 1E+02 0.0022 27.1 3.2 66 12-77 17-92 (176)
180 PRK05368 homoserine O-succinyl 22.0 3.1E+02 0.0067 26.4 6.9 74 32-121 79-152 (302)
181 PLN00049 carboxyl-terminal pro 21.7 61 0.0013 32.3 2.1 96 17-119 194-298 (389)
182 PRK00964 tetrahydromethanopter 21.5 1.1E+02 0.0024 28.0 3.5 65 13-77 21-96 (225)
183 PF03464 eRF1_2: eRF1 domain 2 21.1 2.9E+02 0.0063 22.8 5.9 45 19-63 25-83 (133)
184 TIGR01111 mtrA N5-methyltetrah 21.1 1.2E+02 0.0025 27.9 3.5 68 11-78 19-97 (238)
No 1
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=9.1e-73 Score=553.47 Aligned_cols=368 Identities=75% Similarity=1.217 Sum_probs=326.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh-----
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG----- 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----- 82 (375)
...|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|+|++||+|+|++++.......
T Consensus 8 ~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 346889999999999999999999999999999999999999999999999999999999999999985321111
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEY 162 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~ 162 (375)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~ 167 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEY 167 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHH
Confidence 23444455667788999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|+|||++++|+||+++||||++||++++..+..++.++...+|..+...++.+.......+......+..|++||+.+++
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~ 247 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTV 247 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999998888888877777888888888887654322234455668999999999999
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
++|+++|+.+..+..++|++++++.|.+.||.++++|+++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 248 ~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 327 (381)
T PLN02988 248 EEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAIL 327 (381)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHh
Confidence 99999999853223569999999999999999999999999999999999999999999999997211249999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhcccCCCCC-CccccccCCCCCCchhhhccC
Q 017189 323 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDD-RWEDIKLPARSNLPATAIAKL 375 (375)
Q Consensus 323 ~ek~r~P~w~~~~~~~v~~~~v~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 375 (375)
+||+++|+|+|+++++|+++.|+++|+|+++. +|.+|+||+|-..++.|++|+
T Consensus 328 iDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 381 (381)
T PLN02988 328 VDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAIAKL 381 (381)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhhccC
Confidence 99999999999999999999999999999764 255799999877888888875
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.3e-72 Score=547.74 Aligned_cols=361 Identities=47% Similarity=0.812 Sum_probs=321.8
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc----h-h
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN----E-G 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----~-~ 82 (375)
.+.|.++..+++++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|+|++||+|+|++++..... . .
T Consensus 41 ~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 41 QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999865321 1 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEY 162 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~ 162 (375)
..++..++.+.+.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+.+
T Consensus 121 ~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~ 200 (407)
T PLN02851 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEY 200 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHH
Confidence 44667778888899999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|+|||++++|++|+++||++++||++++..+.+.+.++...++..+.+++++|.....++...+......|++||+.+++
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv 280 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTV 280 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999998888888888777788899999999754323344566678999999999999
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
++|+++|+.+.....++|++++++.|.+.||.++++|+++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 281 ~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~L 360 (407)
T PLN02851 281 EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARL 360 (407)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHh
Confidence 99999999854333468999999999999999999999999999999999999999999999873111349999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhcccCCCCCCccccccCCCCCCchhh
Q 017189 323 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPARSNLPATA 371 (375)
Q Consensus 323 ~ek~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~ 371 (375)
+||+++|+|+|+++++|+++.|+++|+|++..++ +|++|++ .+++|
T Consensus 361 IDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~-~l~~~~~--~~~~~ 406 (407)
T PLN02851 361 VDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESES-ELELPTA--QREPY 406 (407)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcc-cccCCcc--ccccc
Confidence 9999999999999999999999999999965323 7999974 55443
No 3
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.3e-70 Score=537.03 Aligned_cols=357 Identities=48% Similarity=0.842 Sum_probs=313.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch---h--
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE---G-- 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~-- 82 (375)
...|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|+|++||+|+|++++...... .
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999988643211 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEY 162 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~ 162 (375)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 23455556677889999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|++||++++|+||+++||||++||+++++.+.+.+.++...+|.++...++.+..........+......|++||+.+++
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999997777777777777888888777766543222223344457899999999999
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+||+++|+.+......+|++++++.|.+.||.+++++.++++++...++.++++.|+++..+++....++||.|||||.|
T Consensus 276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 355 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL 355 (401)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999998643222468999999999999999999999999999999999999999999999885211359999999999
Q ss_pred ccCCCCCCCCCCCccCCCHHHHHhcccCCCCCCccccccCCCC
Q 017189 323 LDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPARS 365 (375)
Q Consensus 323 ~ek~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~ 365 (375)
+||+++|+|+|+++++|+++.|+++|.|+++ ...+|++|.|+
T Consensus 356 iDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~-~~~~l~~~~~~ 397 (401)
T PLN02157 356 IDKDEAPKWDPPSLEKVSEDMVDDYFCALTP-TEPDLDLPVKL 397 (401)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCC-Cccccccchhh
Confidence 9999999999999999999999999999972 23479999773
No 4
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.1e-70 Score=536.66 Aligned_cols=356 Identities=46% Similarity=0.826 Sum_probs=317.8
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc--hh-h
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN--EG-A 83 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~-~ 83 (375)
.++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|++||+|+|++++..... .. .
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999998854221 11 2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYV 163 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l 163 (375)
.+....+.+..+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++|
T Consensus 89 ~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~l 168 (379)
T PLN02874 89 EVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYL 168 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHHH
Confidence 23334455677899999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
++||++++|+||+++|||+++||++++..+..++.++...+...++.+++.|............+....|.+||+.+++.
T Consensus 169 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 248 (379)
T PLN02874 169 ALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVE 248 (379)
T ss_pred HHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999998877777787787778888999999988765555566667789999999999999
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhc
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+|+++|+++.+...++||.+++++|+++||.+++.+|++++.+...++.++++.|+.....++....++||+|||+||++
T Consensus 249 eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afli 328 (379)
T PLN02874 249 EIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVI 328 (379)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEE
Confidence 99999998765556799999999999999999999999999988889999999999998887761114599999999977
Q ss_pred cCCCCCCCCCCCccCCCHHHHHhcccCCCCCCccccccCCC
Q 017189 324 DKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPAR 364 (375)
Q Consensus 324 ek~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~ 364 (375)
||+|+|+|+++++++|++++|+++|+|++.. +||++|++
T Consensus 329 dK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~--~~~~~~~~ 367 (379)
T PLN02874 329 DKDNAPKWNPSTLDEVTDEKVDLVFQPFKAR--EELQLPEE 367 (379)
T ss_pred cCCCCCCCCCCChhhCCHHHHHHHhCCCCCc--cccCCCcc
Confidence 8878999999999999999999999999765 68999986
No 5
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-67 Score=492.03 Aligned_cols=352 Identities=51% Similarity=0.900 Sum_probs=326.3
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh----
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG---- 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---- 82 (375)
...|.++.++..+.||||||+++||||.+|+..+.-.|..++.++.+++||+.|+| ++||+|+|++.......++
T Consensus 37 ~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 37 KDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 46799999999999999999999999999999999999999999999999999996 9999999998665433222
Q ss_pred -hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHH
Q 017189 83 -AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGE 161 (375)
Q Consensus 83 -~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~ 161 (375)
..|++..|.+...|.++.||.||.+||..||||++|+.+.-||||||++.|+|||+.+|++||.|++|+|+|++|..+.
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~ 196 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGL 196 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCCh-HHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDP-AVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
||.|||+++++.||...||++|+|++++|..++++|......+| ..+.+.+++|.....++...+.+.+..|++||+++
T Consensus 197 YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~ 276 (401)
T KOG1684|consen 197 YLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN 276 (401)
T ss_pred hhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc
Confidence 99999999999999999999999999999999999985555666 67999999999988777778888999999999999
Q ss_pred CHHHHHHHHhhcc-cccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHh
Q 017189 241 TVEEILSALESES-TNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 319 (375)
Q Consensus 241 ~~~ei~~~L~~~~-~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~ 319 (375)
+++|||++|+... .+...+||++++++|...||.++++|.+.++.+..+++++++..|+++..+...++ ||.||++
T Consensus 277 tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~---DF~EGvR 353 (401)
T KOG1684|consen 277 TVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRG---DFCEGVR 353 (401)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc---chhhhhh
Confidence 9999999986554 34668999999999999999999999999999999999999999999999988765 9999999
Q ss_pred hhhccCCCCCCCCCCCccCCCHHHHHhcccCCCCCCccccccCCC
Q 017189 320 AILLDKDKNPKWKPSKLELVNDNMVDQYFSKINDDRWEDIKLPAR 364 (375)
Q Consensus 320 A~l~ek~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~ 364 (375)
|.|++|+++|+|+|.++++|++++|+.||.|++.. .+|++|-.
T Consensus 354 A~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~~--~eLklp~~ 396 (401)
T KOG1684|consen 354 AVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPSK--SELKLPVW 396 (401)
T ss_pred heeecCCcCCCCCCcchhhcCHHHHHHhccCCCCc--ccccCchh
Confidence 99999999999999999999999999999997653 68888844
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.4e-65 Score=498.72 Aligned_cols=333 Identities=43% Similarity=0.761 Sum_probs=297.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccc---hh-h
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGIN---EG-A 83 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---~~-~ 83 (375)
+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... .. .
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3688999999999999999999999999999999999999999999999999999 99999999998754221 11 1
Q ss_pred -HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHH
Q 017189 84 -KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEY 162 (375)
Q Consensus 84 -~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~ 162 (375)
.++...++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 3444556778889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcC-CCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVN-SSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
|++||+.++|+||+++|||+++||++++....+.+.++. .++.+.++.++.+|....+ .+++....+.|++||+..+
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAP--ASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCC--cchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999988866545554433 3445668888999877643 3467788899999999999
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+++|+++|+.+ .++|+.+++++|+++||.+++.+|++++.....+++++++.|...+..++.++ |+.||+++|
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSP---DFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC---chhhccceE
Confidence 99999999997 35899999999999999999999999999888899999999999999999765 999999999
Q ss_pred hccCCCCCCCCCCCccCCCHHHHHhcccC
Q 017189 322 LLDKDKNPKWKPSKLELVNDNMVDQYFSK 350 (375)
Q Consensus 322 l~ek~r~P~w~~~~~~~v~~~~v~~~f~~ 350 (375)
+++|+|.|+|+++++++|++++|++||+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 65765889999999999999999999998
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-55 Score=409.03 Aligned_cols=254 Identities=26% Similarity=0.419 Sum_probs=227.5
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHH
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFS 87 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (375)
++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ..+..
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~ 81 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFM-DVYKG 81 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchh-HHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999987543211 22223
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
.+..++.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++|++|
T Consensus 82 ~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~ 161 (257)
T PRK05862 82 DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLT 161 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHh
Confidence 4445778899999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|+.++|+||+++||||+++|++++.+ ++.
T Consensus 162 g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------- 190 (257)
T PRK05862 162 GRMMDAAEAERAGLVSRVVPADKLLD--EAL------------------------------------------------- 190 (257)
T ss_pred CCccCHHHHHHcCCCCEeeCHhHHHH--HHH-------------------------------------------------
Confidence 99999999999999999999877633 322
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKD 326 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~ 326 (375)
+.++++++.+|.++..+|++++.....++.+++..|...+..++.++ |++||+++| .+|
T Consensus 191 ----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---~~~e~i~af-~~k- 249 (257)
T PRK05862 191 ----------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATE---DQKEGMAAF-VEK- 249 (257)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-hcc-
Confidence 23688999999999999999999888899999999999999999765 999999999 599
Q ss_pred CCCCCCCC
Q 017189 327 KNPKWKPS 334 (375)
Q Consensus 327 r~P~w~~~ 334 (375)
|+|+|+++
T Consensus 250 r~p~~~~~ 257 (257)
T PRK05862 250 RKPVFKHR 257 (257)
T ss_pred CCCCCCCC
Confidence 88999863
No 8
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-54 Score=408.97 Aligned_cols=262 Identities=26% Similarity=0.392 Sum_probs=233.1
Q ss_pred CCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhcc
Q 017189 1 MASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGI 79 (375)
Q Consensus 1 M~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~ 79 (375)
|++-....+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....
T Consensus 3 ~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~ 82 (269)
T PRK06127 3 MSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR 82 (269)
T ss_pred ccccCCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc
Confidence 555555567899999999999999999999999999999999999999999999999999999 7999999999875432
Q ss_pred ch--h-hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcc
Q 017189 80 NE--G-AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLP 156 (375)
Q Consensus 80 ~~--~-~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~ 156 (375)
.. . ..+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 162 (269)
T PRK06127 83 SDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLV 162 (269)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHh
Confidence 11 1 23444556678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHH
Q 017189 157 G-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDK 235 (375)
Q Consensus 157 g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (375)
| .+++++++||+.++|+||+++||||+|||++++.. ++.
T Consensus 163 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------- 202 (269)
T PRK06127 163 GPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLET--ALA-------------------------------------- 202 (269)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHH--HHH--------------------------------------
Confidence 9 67999999999999999999999999999887743 222
Q ss_pred HhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHH
Q 017189 236 CFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFF 315 (375)
Q Consensus 236 ~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~ 315 (375)
+.+++++..||.+++.+|++++.....++.+.++.|...+..++.++ |++
T Consensus 203 ---------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~ 252 (269)
T PRK06127 203 ---------------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDSE---DYR 252 (269)
T ss_pred ---------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCh---HHH
Confidence 23789999999999999999999888889999999999999999765 999
Q ss_pred hhHhhhhccCCCCCCCCCC
Q 017189 316 EGCRAILLDKDKNPKWKPS 334 (375)
Q Consensus 316 egv~A~l~ek~r~P~w~~~ 334 (375)
||+++| ++| |.|+|+++
T Consensus 253 e~~~af-~ek-r~p~~~~~ 269 (269)
T PRK06127 253 EGRAAF-MEK-RKPVFKGR 269 (269)
T ss_pred HHHHHH-hcC-CCCCCCCC
Confidence 999999 599 88999763
No 9
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.7e-54 Score=407.27 Aligned_cols=255 Identities=27% Similarity=0.424 Sum_probs=229.5
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AK 84 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~ 84 (375)
+++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++....... ..
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 81 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRK 81 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHH
Confidence 467799999999999999999999999999999999999999999999999999999 9999999999875432211 23
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 161 (260)
T PRK05809 82 FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKEL 161 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 3344456788899999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
++||+.++|+||+++||||+++|++++.. .+.
T Consensus 162 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~---------------------------------------------- 193 (260)
T PRK05809 162 IYTGDMINAEEALRIGLVNKVVEPEKLME--EAK---------------------------------------------- 193 (260)
T ss_pred HHhCCCCCHHHHHHcCCCCcccChHHHHH--HHH----------------------------------------------
Confidence 99999999999999999999999877632 222
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhc
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+.++++++.||.+++.+|+.++.....++.++++.|.+.+..++.++ |++||+++| +
T Consensus 194 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~egi~af-~ 250 (260)
T PRK05809 194 -------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTE---DQTEGMTAF-V 250 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH-h
Confidence 33789999999999999999999888899999999999999999765 999999999 5
Q ss_pred cCCCCCCCCC
Q 017189 324 DKDKNPKWKP 333 (375)
Q Consensus 324 ek~r~P~w~~ 333 (375)
+| |+|+|++
T Consensus 251 ~~-r~p~~~~ 259 (260)
T PRK05809 251 EK-REKNFKN 259 (260)
T ss_pred cC-CCCCCCC
Confidence 99 8999975
No 10
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.7e-54 Score=406.13 Aligned_cols=252 Identities=25% Similarity=0.431 Sum_probs=226.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSK 88 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (375)
..|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ..+...
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~ 80 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLA-ATLNDP 80 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchh-hhHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999999987542211 122233
Q ss_pred HHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcC
Q 017189 89 EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTG 167 (375)
Q Consensus 89 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG 167 (375)
...++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++++++|
T Consensus 81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g 160 (255)
T PRK09674 81 RPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTG 160 (255)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 456778899999999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred CccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILS 247 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 247 (375)
+.++|+||+++||||++||++++.. .+.
T Consensus 161 ~~~~a~eA~~~Glv~~vv~~~~~~~--~a~-------------------------------------------------- 188 (255)
T PRK09674 161 ESITAQQAQQAGLVSEVFPPELTLE--RAL-------------------------------------------------- 188 (255)
T ss_pred CccCHHHHHHcCCCcEecChHHHHH--HHH--------------------------------------------------
Confidence 9999999999999999999887632 222
Q ss_pred HHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCC
Q 017189 248 ALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDK 327 (375)
Q Consensus 248 ~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r 327 (375)
+.+++|++.||.+++.+|+.++.....++.++++.|...+..++.++ |++||+++| .+| |
T Consensus 189 ---------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~i~af-~~k-r 248 (255)
T PRK09674 189 ---------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE---DRHEGISAF-LEK-R 248 (255)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH-hcc-C
Confidence 33789999999999999999999888899999999999999998755 999999999 588 8
Q ss_pred CCCCCC
Q 017189 328 NPKWKP 333 (375)
Q Consensus 328 ~P~w~~ 333 (375)
+|+|++
T Consensus 249 ~p~~~~ 254 (255)
T PRK09674 249 TPDFKG 254 (255)
T ss_pred CCCCCC
Confidence 999975
No 11
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-54 Score=405.92 Aligned_cols=252 Identities=28% Similarity=0.336 Sum_probs=224.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh-hHHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-AKFFS 87 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 87 (375)
+.|.++++++|++||||||++.|+||.+|+.+|.++++.++ +++|+|||||.|++||+|.|++++....... ..+..
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 79 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSR 79 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHH
Confidence 46889999999999999999999999999999999999987 7899999999999999999999985432211 23344
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
.+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|++|
T Consensus 80 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~lt 159 (255)
T PRK08150 80 RWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLT 159 (255)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHc
Confidence 5567788899999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|+.++|+||+++||||++||++++.+ .+.
T Consensus 160 g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------- 188 (255)
T PRK08150 160 GRVYDAQEGERLGLAQYLVPAGEALD--KAM------------------------------------------------- 188 (255)
T ss_pred CCcCCHHHHHHcCCccEeeCchHHHH--HHH-------------------------------------------------
Confidence 99999999999999999999887733 332
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKD 326 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~ 326 (375)
+.+++|++.||.+++.+|++++.....+++++++.|...+..++.++ |++||+++| .+|
T Consensus 189 ----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~eg~~af-~~k- 247 (255)
T PRK08150 189 ----------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAP---EAKERLRAF-LEK- 247 (255)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH-hcc-
Confidence 23789999999999999999998888889999999998888888654 999999999 598
Q ss_pred CCCCCCCC
Q 017189 327 KNPKWKPS 334 (375)
Q Consensus 327 r~P~w~~~ 334 (375)
|+|+|+++
T Consensus 248 r~p~~~~~ 255 (255)
T PRK08150 248 KAAKVKPP 255 (255)
T ss_pred CCCCCCCC
Confidence 89999763
No 12
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-54 Score=405.93 Aligned_cols=252 Identities=27% Similarity=0.392 Sum_probs=225.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AKFF 86 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~~ 86 (375)
..|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++....... ..+.
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (258)
T PRK09076 3 IELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA 81 (258)
T ss_pred eEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHH
Confidence 368899999999999999986 999999999999999999999999999999999 7999999999875432211 2334
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
..+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++++|++
T Consensus 82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l 161 (258)
T PRK09076 82 RRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMIL 161 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++||||++||++++.+ ++.
T Consensus 162 ~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 191 (258)
T PRK09076 162 CGERVDAATALRIGLVEEVVEKGEARE--AAL------------------------------------------------ 191 (258)
T ss_pred cCCcCCHHHHHHCCCCceecCchhHHH--HHH------------------------------------------------
Confidence 999999999999999999999887633 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
++++++++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++| .+|
T Consensus 192 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~eg~~af-~~k 250 (258)
T PRK09076 192 -----------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDTE---DQREGVNAF-LEK 250 (258)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hcC
Confidence 33789999999999999999998877889999999999999999765 999999999 588
Q ss_pred CCCCCCCC
Q 017189 326 DKNPKWKP 333 (375)
Q Consensus 326 ~r~P~w~~ 333 (375)
|+|+|++
T Consensus 251 -r~p~~~~ 257 (258)
T PRK09076 251 -RAPQWKN 257 (258)
T ss_pred -CCCCCCC
Confidence 8999974
No 13
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.2e-54 Score=405.66 Aligned_cols=261 Identities=26% Similarity=0.397 Sum_probs=229.4
Q ss_pred CCCCC-CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhcc
Q 017189 1 MASAQ-SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI 79 (375)
Q Consensus 1 M~~~~-~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~ 79 (375)
|.++- +..+.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~ 81 (266)
T PRK08139 2 MAPAAATEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAAR 81 (266)
T ss_pred CCccccccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhccc
Confidence 44433 34678899999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred chh--hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch
Q 017189 80 NEG--AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG 157 (375)
Q Consensus 80 ~~~--~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g 157 (375)
... ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG 160 (266)
T PRK08139 82 GLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVP 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhC
Confidence 211 23344556788889999999999999999999999999999999999999999999999999875 568999999
Q ss_pred -HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHH
Q 017189 158 -FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKC 236 (375)
Q Consensus 158 -~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (375)
.++++|++||++++|+||+++||||++||++++.....
T Consensus 161 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------- 199 (266)
T PRK08139 161 RKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA----------------------------------------- 199 (266)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH-----------------------------------------
Confidence 67999999999999999999999999999887643222
Q ss_pred hCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHh
Q 017189 237 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFE 316 (375)
Q Consensus 237 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e 316 (375)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++|
T Consensus 200 --------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~e 250 (266)
T PRK08139 200 --------------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAE---DAEE 250 (266)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCc---hHHH
Confidence 23789999999999999999999888899999999999999988755 9999
Q ss_pred hHhhhhccCCCCCCCCCC
Q 017189 317 GCRAILLDKDKNPKWKPS 334 (375)
Q Consensus 317 gv~A~l~ek~r~P~w~~~ 334 (375)
|+++| ++| |+|+|.++
T Consensus 251 g~~af-~~k-r~p~~~~~ 266 (266)
T PRK08139 251 GIDAF-LEK-RPPEWRGR 266 (266)
T ss_pred HHHHH-hcC-CCCCCCCC
Confidence 99999 598 89999753
No 14
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-54 Score=408.56 Aligned_cols=254 Identities=24% Similarity=0.331 Sum_probs=226.2
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhcc--------
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI-------- 79 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-------- 79 (375)
++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++....
T Consensus 5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 5 YESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred cceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999875411
Q ss_pred -chh---hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhc
Q 017189 80 -NEG---AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRL 155 (375)
Q Consensus 80 -~~~---~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl 155 (375)
... ..+...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 164 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI 164 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH
Confidence 001 1223445677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-HHHHHHhhcCCccCHHHHHHcCccceecCC-ccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHH
Q 017189 156 PG-FFGEYVGLTGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVI 233 (375)
Q Consensus 156 ~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 233 (375)
+| .++++|++||++++|+||+++||||++||+ +++.. .+.
T Consensus 165 ~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~--~a~------------------------------------ 206 (272)
T PRK06142 165 IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLA--AAH------------------------------------ 206 (272)
T ss_pred hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHH--HHH------------------------------------
Confidence 99 679999999999999999999999999996 66533 221
Q ss_pred HHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcch
Q 017189 234 DKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKD 313 (375)
Q Consensus 234 ~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d 313 (375)
+.+++|++.||.+++.+|+.+++....++.++++.|...+..++.++ |
T Consensus 207 -----------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~---d 254 (272)
T PRK06142 207 -----------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSK---D 254 (272)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---c
Confidence 23789999999999999999998888899999999999999998755 9
Q ss_pred HHhhHhhhhccCCCCCCCCC
Q 017189 314 FFEGCRAILLDKDKNPKWKP 333 (375)
Q Consensus 314 ~~egv~A~l~ek~r~P~w~~ 333 (375)
++||+++| ++| |+|+|++
T Consensus 255 ~~egv~af-~~k-r~p~~~~ 272 (272)
T PRK06142 255 LTEAIAAH-MEK-RPPEFTG 272 (272)
T ss_pred HHHHHHHH-hcC-CCCCCCC
Confidence 99999999 598 8899974
No 15
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-54 Score=405.47 Aligned_cols=250 Identities=29% Similarity=0.470 Sum_probs=225.3
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccc---h--hh
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGIN---E--GA 83 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---~--~~ 83 (375)
.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 4 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 4 TVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred eEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 588999999999999999999999999999999999999999999999999999 79999999998754321 1 12
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
.+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 163 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALE 163 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHH
Confidence 34445566788899999999999999999999999999999999999999999999999999999999999999 57999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
+++||++++|+||+++||||++||++++.. ++.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 196 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLP--AAR--------------------------------------------- 196 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999999877633 222
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.++++++.||.+++.+|++++.....++.+++..|...+..++.++ |++||+++|
T Consensus 197 --------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~af- 252 (260)
T PRK05980 197 --------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSA---DLREGLAAW- 252 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-
Confidence 23688999999999999999999888899999999999999999765 999999999
Q ss_pred ccCCCCCCC
Q 017189 323 LDKDKNPKW 331 (375)
Q Consensus 323 ~ek~r~P~w 331 (375)
++| |+|+|
T Consensus 253 ~~k-r~p~~ 260 (260)
T PRK05980 253 IER-RRPAY 260 (260)
T ss_pred hcc-CCCCC
Confidence 599 88988
No 16
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-55 Score=397.92 Aligned_cols=250 Identities=29% Similarity=0.452 Sum_probs=223.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEF 90 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (375)
......++|+.||||||+++|+|+..|+.||.+++..++.|+.+.++||||.|++||+|.|++++....... -....+.
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~-~~~~~~~ 117 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQD-VSDGIFL 117 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccc-ccccccc
Confidence 345557899999999999999999999999999999999999999999999999999999999987643321 0111122
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCc
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGAR 169 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~ 169 (375)
+.+..+.+.+||+||+|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+|++.+|+|.+| .+|+++++||++
T Consensus 118 ~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~ 197 (290)
T KOG1680|consen 118 RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRR 197 (290)
T ss_pred chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCc
Confidence 3334455899999999999999999999999999999999999999999999999999999999999 679999999999
Q ss_pred cCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHH
Q 017189 170 LDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSAL 249 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L 249 (375)
++|+||+++|||++|||.+++ +.++.
T Consensus 198 ~~AqeA~~~GlVn~Vvp~~~~--l~eAv---------------------------------------------------- 223 (290)
T KOG1680|consen 198 LGAQEAKKIGLVNKVVPSGDA--LGEAV---------------------------------------------------- 223 (290)
T ss_pred ccHHHHHhCCceeEeecchhH--HHHHH----------------------------------------------------
Confidence 999999999999999999886 44544
Q ss_pred hhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCCC
Q 017189 250 ESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKNP 329 (375)
Q Consensus 250 ~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~P 329 (375)
+++++|+++||.+++..|++++.+...++.+++..|...+...+..+ |.+||+.+| .+| |+|
T Consensus 224 -------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~---d~~Eg~~~f-~~k-r~~ 285 (290)
T KOG1680|consen 224 -------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATE---DRLEGMTAF-AEK-RKP 285 (290)
T ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhH---HHHHHHHHh-ccc-CCc
Confidence 33799999999999999999999999999999999999999999765 999999999 799 899
Q ss_pred CCCC
Q 017189 330 KWKP 333 (375)
Q Consensus 330 ~w~~ 333 (375)
+|+.
T Consensus 286 ~~~k 289 (290)
T KOG1680|consen 286 KFSK 289 (290)
T ss_pred cccc
Confidence 9974
No 17
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-54 Score=404.66 Aligned_cols=251 Identities=27% Similarity=0.430 Sum_probs=226.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch-h-hHHHH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE-G-AKFFS 87 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~-~~~~~ 87 (375)
.|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++...... . ..+..
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 68899999999999999986 999999999999999999999999999999999999999999987543221 1 23344
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
....++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++|++|
T Consensus 82 ~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~ 161 (257)
T PRK07658 82 LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLT 161 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHc
Confidence 5567888899999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|++++|+||+++||||++||++++.+ ++.
T Consensus 162 g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------- 190 (257)
T PRK07658 162 SEPITGAEALKWGLVNGVFPEETLLD--DAK------------------------------------------------- 190 (257)
T ss_pred CCCcCHHHHHHcCCcCeecChhHHHH--HHH-------------------------------------------------
Confidence 99999999999999999999887633 222
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKD 326 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~ 326 (375)
+.++++++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++| .+|
T Consensus 191 ----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~egi~af-~~k- 249 (257)
T PRK07658 191 ----------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSE---DAKEGVQAF-LEK- 249 (257)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHH-HcC-
Confidence 33788999999999999999998888899999999999999999755 999999999 488
Q ss_pred CCCCCCC
Q 017189 327 KNPKWKP 333 (375)
Q Consensus 327 r~P~w~~ 333 (375)
|+|+|++
T Consensus 250 r~p~~~~ 256 (257)
T PRK07658 250 RKPSFSG 256 (257)
T ss_pred CCCCCCC
Confidence 8999975
No 18
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-54 Score=404.23 Aligned_cols=253 Identities=26% Similarity=0.377 Sum_probs=225.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc---hh--
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN---EG-- 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~-- 82 (375)
++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++ |+++++|||||+|++||+|.|++++..... ..
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 567899999999999999999999999999999999999999 999999999999999999999998753221 11
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
..+...+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .+++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 112222345677899999999999999999999999999999999999999999999999999999999999999 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||+|||++++.. ++.
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------- 195 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALAD--EAQ-------------------------------------------- 195 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHH--HHH--------------------------------------------
Confidence 9999999999999999999999999887633 222
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++|
T Consensus 196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~af 251 (262)
T PRK08140 196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRSA---DYAEGVSAF 251 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH
Confidence 33789999999999999999998888899999999999999888765 999999999
Q ss_pred hccCCCCCCCCC
Q 017189 322 LLDKDKNPKWKP 333 (375)
Q Consensus 322 l~ek~r~P~w~~ 333 (375)
++| |+|+|++
T Consensus 252 -~~k-r~p~~~~ 261 (262)
T PRK08140 252 -LEK-RAPRFTG 261 (262)
T ss_pred -hcC-CCCCCCC
Confidence 598 8899975
No 19
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-54 Score=404.47 Aligned_cols=254 Identities=28% Similarity=0.416 Sum_probs=223.9
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch-h--hH
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE-G--AK 84 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~--~~ 84 (375)
++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... . ..
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG 83 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999988643211 1 11
Q ss_pred -H-HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 85 -F-FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 85 -~-~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
+ ...+.. +.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus 84 ~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 162 (263)
T PRK07799 84 SYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVAC 162 (263)
T ss_pred hhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 111222 33468899999999999999999999999999999999999999999999999999999999999 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||+|||++++. .+++
T Consensus 163 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~a~-------------------------------------------- 196 (263)
T PRK07799 163 DLLLTGRHITAAEAKEIGLIGHVVPDGQAL--DKAL-------------------------------------------- 196 (263)
T ss_pred HHHHcCCCCCHHHHHHcCCccEecCcchHH--HHHH--------------------------------------------
Confidence 999999999999999999999999998763 2333
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.++++++.||.+++.+|++++.....++.++++.|.+.+..++.++ |++||+++|
T Consensus 197 ---------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~af 252 (263)
T PRK07799 197 ---------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSE---DAKEGPRAF 252 (263)
T ss_pred ---------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---cHHHHHHHH
Confidence 23789999999999999999998888899999999999999988765 999999999
Q ss_pred hccCCCCCCCCCC
Q 017189 322 LLDKDKNPKWKPS 334 (375)
Q Consensus 322 l~ek~r~P~w~~~ 334 (375)
+ +| |+|+|+++
T Consensus 253 ~-~~-r~p~~~~~ 263 (263)
T PRK07799 253 A-EK-RAPNFQGR 263 (263)
T ss_pred H-cc-CCCCCCCC
Confidence 4 88 89999864
No 20
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-54 Score=403.53 Aligned_cols=251 Identities=25% Similarity=0.342 Sum_probs=220.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch-hhHHHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE-GAKFFSKE 89 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~ 89 (375)
|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...+....
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 80 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGG 80 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999987543211 11222222
Q ss_pred HHHH-HHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcC
Q 017189 90 FILN-YLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTG 167 (375)
Q Consensus 90 ~~l~-~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG 167 (375)
.+.+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..++++++||
T Consensus 81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg 160 (255)
T PRK06563 81 IDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTG 160 (255)
T ss_pred hHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcC
Confidence 2223 3578899999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred CccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILS 247 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 247 (375)
+.++|+||+++||||++||++++.+ +++
T Consensus 161 ~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------------- 188 (255)
T PRK06563 161 DEFDAQEALRLGLVQEVVPPGEQLE--RAI-------------------------------------------------- 188 (255)
T ss_pred CCcCHHHHHHcCCCcEeeCHHHHHH--HHH--------------------------------------------------
Confidence 9999999999999999999887632 333
Q ss_pred HHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCC
Q 017189 248 ALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDK 327 (375)
Q Consensus 248 ~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r 327 (375)
+.++++++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++| .+| |
T Consensus 189 ---------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~k-r 248 (255)
T PRK06563 189 ---------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSE---DAKEGVQAF-LER-R 248 (255)
T ss_pred ---------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hcC-C
Confidence 23688999999999999999998888899999999999999998755 999999999 599 8
Q ss_pred CCCCCC
Q 017189 328 NPKWKP 333 (375)
Q Consensus 328 ~P~w~~ 333 (375)
+|+|++
T Consensus 249 ~p~~~~ 254 (255)
T PRK06563 249 PARFKG 254 (255)
T ss_pred CCCCCC
Confidence 899975
No 21
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=5.6e-54 Score=402.92 Aligned_cols=250 Identities=28% Similarity=0.397 Sum_probs=222.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch--h--hHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE--G--AKFF 86 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~--~~~~ 86 (375)
|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +|+|||||.|++||+|.|++++...... . ..+.
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 467889999999999999999999999999999999999998 9999999999999999999987642211 1 1122
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
..+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++++|++
T Consensus 80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l 159 (256)
T TIGR02280 80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAM 159 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 22345677899999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++||||++||++++.. +++
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 189 (256)
T TIGR02280 160 LGEKLDARTAASWGLIWQVVDDAALMD--EAQ------------------------------------------------ 189 (256)
T ss_pred cCCCCCHHHHHHcCCcceeeChHHHHH--HHH------------------------------------------------
Confidence 999999999999999999999887633 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.++++++.||.+++.+|+.++......+.++++.|.+.+..++.++ |++||+++| .+|
T Consensus 190 -----------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~k 248 (256)
T TIGR02280 190 -----------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSA---DYAEGVTAF-LDK 248 (256)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-HcC
Confidence 23789999999999999999998888889999999999999998765 999999999 599
Q ss_pred CCCCCCCC
Q 017189 326 DKNPKWKP 333 (375)
Q Consensus 326 ~r~P~w~~ 333 (375)
|+|+|++
T Consensus 249 -r~p~~~~ 255 (256)
T TIGR02280 249 -RNPQFTG 255 (256)
T ss_pred -CCCCCCC
Confidence 8999975
No 22
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-54 Score=405.55 Aligned_cols=252 Identities=25% Similarity=0.355 Sum_probs=225.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc--h--h-hH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN--E--G-AK 84 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~--~-~~ 84 (375)
.+.++.+++|++||||||++.|+|+.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... . . ..
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998743211 1 1 23
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCC-CccHHHHHhhcch-HHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFP-DIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~l~rl~g-~~a~~ 162 (375)
+.....+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++| .++++
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 334455788889999999999999999999999999999999999999999999999995 7889999999999 57999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|++||++++|+||+++||||++||++++.. .+.
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 210 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLA--EAQ--------------------------------------------- 210 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999999877633 222
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++|
T Consensus 211 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---d~~eg~~af- 266 (277)
T PRK08258 211 --------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTE---DFRRAYEAF- 266 (277)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-
Confidence 23789999999999999999999888899999999999999999765 999999999
Q ss_pred ccCCCCCCCCC
Q 017189 323 LDKDKNPKWKP 333 (375)
Q Consensus 323 ~ek~r~P~w~~ 333 (375)
++| |+|+|++
T Consensus 267 ~ek-r~p~~~~ 276 (277)
T PRK08258 267 VAK-RKPVFEG 276 (277)
T ss_pred hcC-CCCCCCC
Confidence 599 8999975
No 23
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-54 Score=402.28 Aligned_cols=253 Identities=28% Similarity=0.418 Sum_probs=226.2
Q ss_pred CCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHH
Q 017189 8 EDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
.+.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ...+.
T Consensus 6 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~ 84 (261)
T PRK08138 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA-IEMYL 84 (261)
T ss_pred CCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch-hHHHH
Confidence 34678887 78999999999999999999999999999999999999999999999999999999998764321 12333
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 85 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 164 (261)
T PRK08138 85 RHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMAL 164 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||+.++|+||+++||||++||++++.. ++.
T Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 194 (261)
T PRK08138 165 TGCMVPAPEALAIGLVSEVVEDEQTLP--RAL------------------------------------------------ 194 (261)
T ss_pred cCCCCCHHHHHHCCCCcEecCchHHHH--HHH------------------------------------------------
Confidence 999999999999999999999887632 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.++++++.||.+++.+|++++.....++.+++..|.+.+..++.++ |++||+++| .+|
T Consensus 195 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~i~af-~~k 253 (261)
T PRK08138 195 -----------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSE---DQKEGMDAF-LEK 253 (261)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH-hcC
Confidence 22678889999999999999998888889999999999999999765 999999999 599
Q ss_pred CCCCCCCC
Q 017189 326 DKNPKWKP 333 (375)
Q Consensus 326 ~r~P~w~~ 333 (375)
|+|+|++
T Consensus 254 -r~~~~~~ 260 (261)
T PRK08138 254 -RKPAYKG 260 (261)
T ss_pred -CCCCCCC
Confidence 8899975
No 24
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=5e-54 Score=401.94 Aligned_cols=247 Identities=26% Similarity=0.432 Sum_probs=222.0
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hHHHHHHHHHH
Q 017189 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AKFFSKEFILN 93 (375)
Q Consensus 16 ~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~l~ 93 (375)
.++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..+...+..++
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF 81 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999985 8999999999875422211 33455566778
Q ss_pred HHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCccCH
Q 017189 94 YLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGARLDG 172 (375)
Q Consensus 94 ~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A 172 (375)
.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++++|++||+.++|
T Consensus 82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a 161 (251)
T PLN02600 82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGA 161 (251)
T ss_pred HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 8899999999999999999999999999999999999999999999999999999999999999 679999999999999
Q ss_pred HHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHHhhc
Q 017189 173 AEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESE 252 (375)
Q Consensus 173 ~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~ 252 (375)
+||+++||||++||++++.. +++
T Consensus 162 ~eA~~~Glv~~vv~~~~~~~--~a~------------------------------------------------------- 184 (251)
T PLN02600 162 REAASMGLVNYCVPAGEAYE--KAL------------------------------------------------------- 184 (251)
T ss_pred HHHHHcCCCcEeeChhHHHH--HHH-------------------------------------------------------
Confidence 99999999999999887632 332
Q ss_pred ccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCCCCCC
Q 017189 253 STNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKNPKWK 332 (375)
Q Consensus 253 ~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~P~w~ 332 (375)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||+++| .+| |+|+|+
T Consensus 185 ----------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~ek-r~p~~~ 249 (251)
T PLN02600 185 ----------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTK---DRLEGLAAF-AEK-RKPVYT 249 (251)
T ss_pred ----------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHH-hcC-CCCCCC
Confidence 33789999999999999999998888899999999999999999765 999999999 599 889997
Q ss_pred CC
Q 017189 333 PS 334 (375)
Q Consensus 333 ~~ 334 (375)
++
T Consensus 250 ~~ 251 (251)
T PLN02600 250 GK 251 (251)
T ss_pred CC
Confidence 53
No 25
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-54 Score=402.73 Aligned_cols=254 Identities=27% Similarity=0.438 Sum_probs=227.7
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hHH
Q 017189 9 DQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AKF 85 (375)
Q Consensus 9 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~ 85 (375)
+.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..+
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA 82 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence 3688886 799999999999999999999999999999999999999999999999 5999999999875422211 334
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHh
Q 017189 86 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVG 164 (375)
Q Consensus 86 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ 164 (375)
...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| ..+++++
T Consensus 83 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~ 162 (260)
T PRK07657 83 VSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI 162 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHH
Confidence 455677888999999999999999999999999999999999999999999999999999999999999999 6799999
Q ss_pred hcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHH
Q 017189 165 LTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 244 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 244 (375)
+||++++|+||+++||||++||++++.. .+.
T Consensus 163 l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------------- 193 (260)
T PRK07657 163 YTGRRISAQEAKEIGLVEFVVPAHLLEE--KAI----------------------------------------------- 193 (260)
T ss_pred HhCCCCCHHHHHHcCCCCeecCHHHHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999887633 222
Q ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhcc
Q 017189 245 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 324 (375)
Q Consensus 245 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~e 324 (375)
+.+++++..+|.+++.+|++++.....++.++++.|...+..++.++ |++||+++| .+
T Consensus 194 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~af-~~ 251 (260)
T PRK07657 194 ------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTK---DRLEGLQAF-KE 251 (260)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH---hHHHHHHHH-hc
Confidence 23788999999999999999999888889999999999999999765 999999999 59
Q ss_pred CCCCCCCCCC
Q 017189 325 KDKNPKWKPS 334 (375)
Q Consensus 325 k~r~P~w~~~ 334 (375)
| |+|+|+++
T Consensus 252 ~-r~~~~~~~ 260 (260)
T PRK07657 252 K-RKPMYKGE 260 (260)
T ss_pred C-CCCCCCCC
Confidence 8 89999753
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-54 Score=403.59 Aligned_cols=252 Identities=25% Similarity=0.401 Sum_probs=224.4
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-----h-h
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSA-QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-----E-G 82 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~-~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----~-~ 82 (375)
.|.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++..... . .
T Consensus 4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD 83 (266)
T ss_pred ceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence 48999999999999999999999995 999999999999999999999999999999999999998754211 0 0
Q ss_pred --hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HH
Q 017189 83 --AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FF 159 (375)
Q Consensus 83 --~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~ 159 (375)
..+...+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++| .+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 163 (266)
T PRK09245 84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMAR 163 (266)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHH
Confidence 122233456778899999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCc
Q 017189 160 GEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 239 (375)
Q Consensus 160 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 239 (375)
+++|++||++++|+||+++||||++||++++.. .+.
T Consensus 164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------ 199 (266)
T PRK09245 164 AAEMAFTGDAIDAATALEWGLVSRVVPADQLLP--AAR------------------------------------------ 199 (266)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcceecCHHHHHH--HHH------------------------------------------
Confidence 999999999999999999999999999887643 222
Q ss_pred CCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHh
Q 017189 240 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 319 (375)
Q Consensus 240 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~ 319 (375)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.++ |++||++
T Consensus 200 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~eg~~ 253 (266)
T PRK09245 200 -----------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTA---DHREAVD 253 (266)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH---hHHHHHH
Confidence 23789999999999999999998888889999999999998888654 9999999
Q ss_pred hhhccCCCCCCCCC
Q 017189 320 AILLDKDKNPKWKP 333 (375)
Q Consensus 320 A~l~ek~r~P~w~~ 333 (375)
+| ++| |.|.|++
T Consensus 254 af-~~k-r~p~~~~ 265 (266)
T PRK09245 254 AF-LEK-RPPVFTG 265 (266)
T ss_pred HH-HcC-CCCCCCC
Confidence 99 599 8999975
No 27
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-53 Score=401.26 Aligned_cols=253 Identities=29% Similarity=0.388 Sum_probs=220.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchhhHH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKF 85 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (375)
+++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++....... ..
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-~~ 80 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-WP 80 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-hh
Confidence 456799999999999999999999999999999999999999999999999999999 7999999999875432211 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHh
Q 017189 86 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVG 164 (375)
Q Consensus 86 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ 164 (375)
...+..+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..+++|+
T Consensus 81 ~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ll 159 (259)
T PRK06494 81 ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMI 159 (259)
T ss_pred hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHH
Confidence 1122223 3346899999999999999999999999999999999999999999999999999999999999 5799999
Q ss_pred hcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHH
Q 017189 165 LTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 244 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 244 (375)
+||+.++|+||+++||||++||++++.. .+.
T Consensus 160 l~g~~~~a~eA~~~GLv~~vv~~~~l~~--~a~----------------------------------------------- 190 (259)
T PRK06494 160 LTGRRVTAREGLELGFVNEVVPAGELLA--AAE----------------------------------------------- 190 (259)
T ss_pred HcCCcCCHHHHHHcCCCcEecCHhHHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999877633 222
Q ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHH--HHHHHHHhhCCCcchHHhhHhhhh
Q 017189 245 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIRE--YRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 245 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e--~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.++++++.||.+++.+|+.++.....++.++++.| ...+..++.++ |++||+++|
T Consensus 191 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---d~~eg~~af- 248 (259)
T PRK06494 191 ------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQ---DYIEGPKAF- 248 (259)
T ss_pred ------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCc---cHHHHHHHH-
Confidence 237899999999999999999988888899999999 45677777654 999999999
Q ss_pred ccCCCCCCCCC
Q 017189 323 LDKDKNPKWKP 333 (375)
Q Consensus 323 ~ek~r~P~w~~ 333 (375)
++| |+|+|++
T Consensus 249 ~~k-r~p~~~~ 258 (259)
T PRK06494 249 AEK-RPPRWKG 258 (259)
T ss_pred Hcc-CCCCCCC
Confidence 588 8899975
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-53 Score=402.22 Aligned_cols=255 Identities=25% Similarity=0.396 Sum_probs=223.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-h-h--
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E-G-- 82 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~-- 82 (375)
.++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||+|++||+|+|++++..... . .
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN 81 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999998753211 1 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ +++++| .+++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 11233456788889999999999999999999999999999999999999999999999999988764 788899 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||+|||++++.. ++.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------- 194 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDA--KVD-------------------------------------------- 194 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHH--HHH--------------------------------------------
Confidence 9999999999999999999999999877643 221
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHHhhCCCcchHHhhHhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQC-LIREYRMVCHVMMGEVSKDFFEGCRA 320 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~-l~~e~~~~~~~~~~~~s~d~~egv~A 320 (375)
++++++++.||.+++.+|+.++.....++.+. ++.|...+..++.++ |++||+++
T Consensus 195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~e~~~a 250 (262)
T PRK05995 195 ---------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATE---EAREGVAA 250 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 23789999999999999999998877888888 888888888888654 99999999
Q ss_pred hhccCCCCCCCCCC
Q 017189 321 ILLDKDKNPKWKPS 334 (375)
Q Consensus 321 ~l~ek~r~P~w~~~ 334 (375)
| .+| |+|+|+++
T Consensus 251 f-~~k-r~p~~~~~ 262 (262)
T PRK05995 251 F-LEK-RKPAWRGR 262 (262)
T ss_pred H-hcC-CCCCCCCC
Confidence 9 599 89999864
No 29
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-53 Score=399.64 Aligned_cols=249 Identities=25% Similarity=0.360 Sum_probs=219.9
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKE 89 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (375)
.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ......+
T Consensus 4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~~~ 82 (254)
T PRK08252 4 EVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERP-SIPGRGF 82 (254)
T ss_pred eEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccch-hhhHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999988643211 1111112
Q ss_pred HHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCC
Q 017189 90 FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGA 168 (375)
Q Consensus 90 ~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~ 168 (375)
..+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++++|++||+
T Consensus 83 ~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 160 (254)
T PRK08252 83 GGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGD 160 (254)
T ss_pred HHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCC
Confidence 2222 24699999999999999999999999999999999999999999999999999999999999 67999999999
Q ss_pred ccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHH
Q 017189 169 RLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSA 248 (375)
Q Consensus 169 ~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~ 248 (375)
+++|+||+++||||+|||++++.. ++.
T Consensus 161 ~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------------- 187 (254)
T PRK08252 161 MLTAERAHELGLVNRLTEPGQALD--AAL--------------------------------------------------- 187 (254)
T ss_pred ccCHHHHHHcCCcceecCcchHHH--HHH---------------------------------------------------
Confidence 999999999999999999887633 222
Q ss_pred HhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCC
Q 017189 249 LESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKN 328 (375)
Q Consensus 249 L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~ 328 (375)
+.++++++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++| ++| |+
T Consensus 188 --------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~eg~~af-~~k-r~ 248 (254)
T PRK08252 188 --------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSA---DAKEGATAF-AEK-RA 248 (254)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hcC-CC
Confidence 33789999999999999999998888889999999999999988765 999999999 588 88
Q ss_pred CCCCC
Q 017189 329 PKWKP 333 (375)
Q Consensus 329 P~w~~ 333 (375)
|+|++
T Consensus 249 p~~~~ 253 (254)
T PRK08252 249 PVWTG 253 (254)
T ss_pred CCCCC
Confidence 99975
No 30
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1e-53 Score=404.91 Aligned_cols=252 Identities=23% Similarity=0.334 Sum_probs=221.8
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-----h---
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-----E--- 81 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-----~--- 81 (375)
.+..+.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 9 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PLN02664 9 IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88 (275)
T ss_pred EEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence 34455689999999999999999999999999999999999999999999999999999999998754211 0
Q ss_pred ---h-hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch
Q 017189 82 ---G-AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG 157 (375)
Q Consensus 82 ---~-~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g 157 (375)
. ..+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 168 (275)
T PLN02664 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG 168 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhC
Confidence 0 122334456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhcCCccCHHHHHHcCccceecCC-ccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHH
Q 017189 158 -FFGEYVGLTGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDK 235 (375)
Q Consensus 158 -~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (375)
.+++++++||+.++|+||+++||||++||+ +++.. +.
T Consensus 169 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~---~~-------------------------------------- 207 (275)
T PLN02664 169 YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDE---GV-------------------------------------- 207 (275)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHH---HH--------------------------------------
Confidence 679999999999999999999999999995 55532 11
Q ss_pred HhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHH
Q 017189 236 CFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFF 315 (375)
Q Consensus 236 ~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~ 315 (375)
.+.+++|++.||.+++.+|++++.....++.++++.|...+..++.++ |++
T Consensus 208 --------------------------~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~ 258 (275)
T PLN02664 208 --------------------------RLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSD---DLN 258 (275)
T ss_pred --------------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCh---hHH
Confidence 133789999999999999999998888899999999999888888655 999
Q ss_pred hhHhhhhccCCCCCCCCC
Q 017189 316 EGCRAILLDKDKNPKWKP 333 (375)
Q Consensus 316 egv~A~l~ek~r~P~w~~ 333 (375)
||+++| ++| |+|.|++
T Consensus 259 eg~~af-~ek-r~p~~~~ 274 (275)
T PLN02664 259 EAVSAQ-IQK-RKPVFAK 274 (275)
T ss_pred HHHHHH-hcc-CCCCCCC
Confidence 999999 599 8999975
No 31
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-53 Score=401.55 Aligned_cols=255 Identities=26% Similarity=0.362 Sum_probs=227.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC-CceEEEEeeCCCCccccCCchhHhhccc-----
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDS-NVKLLILKGKGRAFCAGGDVAAVVRGIN----- 80 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~-~vr~vVltg~g~~F~aG~Dl~~~~~~~~----- 80 (375)
+|+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ ++|+|||||.|++||+|+|++++.....
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4678999999999999999999999999999999999999999876 4999999999999999999998754321
Q ss_pred -h-hhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-
Q 017189 81 -E-GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG- 157 (375)
Q Consensus 81 -~-~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g- 157 (375)
. ...+...+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 1 1223344567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHh
Q 017189 158 FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCF 237 (375)
Q Consensus 158 ~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 237 (375)
..+++|++||++++|+||+++|||++++|++++.. +++
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~--~a~---------------------------------------- 199 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMA--EAM---------------------------------------- 199 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHH--HHH----------------------------------------
Confidence 56999999999999999999999999999887632 222
Q ss_pred CcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhh
Q 017189 238 SRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEG 317 (375)
Q Consensus 238 ~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg 317 (375)
+.+++++..||.+++.+|++++.....++.+.++.|...+..++.++ |++||
T Consensus 200 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~e~ 251 (266)
T PRK05981 200 -------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTE---DFKEG 251 (266)
T ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCh---hHHHH
Confidence 23688999999999999999998878889999999999999888755 99999
Q ss_pred HhhhhccCCCCCCCCC
Q 017189 318 CRAILLDKDKNPKWKP 333 (375)
Q Consensus 318 v~A~l~ek~r~P~w~~ 333 (375)
+++| .+| |+|+|++
T Consensus 252 ~~af-~~k-r~~~~~~ 265 (266)
T PRK05981 252 VGAF-LQK-RPAQFKG 265 (266)
T ss_pred HHHH-hcC-CCCCCCC
Confidence 9999 599 8899975
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-53 Score=398.86 Aligned_cols=253 Identities=25% Similarity=0.362 Sum_probs=226.5
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch-h-hH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE-G-AK 84 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~-~~ 84 (375)
+++.|.++.+++|++||||||++.|++|.+|+.+|.++++.+ .|+++|+|||+|.|++||+|+|++++...... . ..
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07659 4 KMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDG 82 (260)
T ss_pred CCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHH
Confidence 346799999999999999999999999999999999999999 58899999999999999999999998643221 1 34
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+...+.+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..+++|
T Consensus 83 ~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 83 VMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 4556677888899999999999999999999999999999999999999999999999999999999999999 579999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
++||+.++|+||+++||||++| ++++.. .+.
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~--~a~---------------------------------------------- 193 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQT--AAK---------------------------------------------- 193 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHH--HHH----------------------------------------------
Confidence 9999999999999999999999 666533 222
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhc
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+.+++|++.||.+++.+|+.++......+.+.++.|...+..++.++ |++||+++| +
T Consensus 194 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~af-~ 250 (260)
T PRK07659 194 -------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTA---DHKEGIRAF-L 250 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCH---hHHHHHHHH-h
Confidence 23789999999999999999998888899999999999999998755 999999999 5
Q ss_pred cCCCCCCCCC
Q 017189 324 DKDKNPKWKP 333 (375)
Q Consensus 324 ek~r~P~w~~ 333 (375)
+| |+|+|++
T Consensus 251 ~k-r~p~~~~ 259 (260)
T PRK07659 251 EK-RLPVFKG 259 (260)
T ss_pred cC-CCCCCCC
Confidence 99 8899975
No 33
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-53 Score=398.10 Aligned_cols=253 Identities=26% Similarity=0.396 Sum_probs=221.5
Q ss_pred CCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-h-h--
Q 017189 8 EDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E-G-- 82 (375)
Q Consensus 8 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~-- 82 (375)
++.|.++++ ++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..... . .
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR 82 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence 456888886 6899999999999999999999999999999999999999999999999999999998753211 1 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
......+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++ +| .+++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~ 161 (262)
T PRK07468 83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANAR 161 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHH
Confidence 122344566788899999999999999999999999999999999999999999999999999999986655 78 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||+++|++++.....
T Consensus 162 ~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~---------------------------------------------- 195 (262)
T PRK07468 162 RVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE---------------------------------------------- 195 (262)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877633211
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.++++++.||.+++.+|++++......+.+.++.|...+..++.++ |++||+++|
T Consensus 196 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~e~~~af 251 (262)
T PRK07468 196 ---------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETE---EAREGIAAF 251 (262)
T ss_pred ---------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 23689999999999999999988766678999999999999999765 999999999
Q ss_pred hccCCCCCCCCC
Q 017189 322 LLDKDKNPKWKP 333 (375)
Q Consensus 322 l~ek~r~P~w~~ 333 (375)
++| |+|+|++
T Consensus 252 -~~k-r~~~~~~ 261 (262)
T PRK07468 252 -FDK-RAPAWRG 261 (262)
T ss_pred -HcC-CCCCCCC
Confidence 599 8899974
No 34
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-53 Score=397.30 Aligned_cols=251 Identities=24% Similarity=0.381 Sum_probs=227.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc---h-hhHH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN---E-GAKF 85 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~-~~~~ 85 (375)
.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++..... . ...+
T Consensus 4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07511 4 ELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAAS 83 (260)
T ss_pred eeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999998764211 1 1334
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHh
Q 017189 86 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVG 164 (375)
Q Consensus 86 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ 164 (375)
...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 84 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 163 (260)
T PRK07511 84 IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELL 163 (260)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHH
Confidence 556677888999999999999999999999999999999999999999999999999999999999999999 5799999
Q ss_pred hcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHH
Q 017189 165 LTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 244 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 244 (375)
+||++++|+||+++||||++||++++. .+++
T Consensus 164 ltg~~~~a~eA~~~Glv~~vv~~~~~~--~~a~----------------------------------------------- 194 (260)
T PRK07511 164 LEGKPISAERLHALGVVNRLAEPGQAL--AEAL----------------------------------------------- 194 (260)
T ss_pred HhCCCCCHHHHHHcCCccEeeCchHHH--HHHH-----------------------------------------------
Confidence 999999999999999999999987763 2332
Q ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhcc
Q 017189 245 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 324 (375)
Q Consensus 245 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~e 324 (375)
+.++++++.||.+++.+|+.++.....++.++++.|...+..++.++ |+++|+++| ++
T Consensus 195 ------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~i~~f-~~ 252 (260)
T PRK07511 195 ------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHA---DALEGIAAF-LE 252 (260)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hc
Confidence 22688999999999999999999888899999999999999999765 999999999 58
Q ss_pred CCCCCCCC
Q 017189 325 KDKNPKWK 332 (375)
Q Consensus 325 k~r~P~w~ 332 (375)
| |+|.|+
T Consensus 253 ~-r~~~~~ 259 (260)
T PRK07511 253 K-RAPDYK 259 (260)
T ss_pred c-CCCCCC
Confidence 8 789995
No 35
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-53 Score=397.48 Aligned_cols=254 Identities=30% Similarity=0.434 Sum_probs=228.9
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHH
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFS 87 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 87 (375)
.+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........+..
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELA 83 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999988653322133455
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
.+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++| ..++++++|
T Consensus 84 ~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~ 163 (259)
T PRK06688 84 PVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLL 163 (259)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHh
Confidence 6677888999999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|++++|+||+++||||+++|++++.. .+.
T Consensus 164 g~~~~a~eA~~~Glv~~v~~~~~l~~--~a~------------------------------------------------- 192 (259)
T PRK06688 164 GEPLSAEEALRIGLVNRVVPAAELDA--EAD------------------------------------------------- 192 (259)
T ss_pred CCccCHHHHHHcCCcceecCHHHHHH--HHH-------------------------------------------------
Confidence 99999999999999999999877632 222
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKD 326 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~ 326 (375)
+.+++|++.||.+++.+|+.++.....+++++++.|.+.+..++.++ |+++|+++| .+|
T Consensus 193 ----------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~af-~~~- 251 (259)
T PRK06688 193 ----------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTP---DFREGATAF-IEK- 251 (259)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHH-HcC-
Confidence 23688999999999999999999888899999999999999999765 999999999 488
Q ss_pred CCCCCCC
Q 017189 327 KNPKWKP 333 (375)
Q Consensus 327 r~P~w~~ 333 (375)
|+|+|++
T Consensus 252 ~~p~~~~ 258 (259)
T PRK06688 252 RKPDFTG 258 (259)
T ss_pred CCCCCCC
Confidence 8899974
No 36
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=4e-53 Score=396.94 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=214.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchhhHHH
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
|+.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........+.
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 80 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIG 80 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHH
Confidence 45689999999999999999999999999999999999999999999999999999 79999999998743211111222
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
..+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++| .+++++++
T Consensus 81 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll 160 (256)
T TIGR03210 81 LPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWY 160 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHH
Confidence 33456788899999999999999999999999999999999999999999999999988888999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++||||++||++++.. ++.
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 190 (256)
T TIGR03210 161 LCRRYTAQEALAMGLVNAVVPHDQLDA--EVQ------------------------------------------------ 190 (256)
T ss_pred hCCCcCHHHHHHcCCceeeeCHHHHHH--HHH------------------------------------------------
Confidence 999999999999999999999877643 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhhCCCcchHHhhHhhhhcc
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGV-GQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 324 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l-~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~e 324 (375)
+.+++|++.||.+++.+|++++....... .+. .|...+..++.+ +|++||+++| .+
T Consensus 191 -----------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~d~~e~~~af-~~ 247 (256)
T TIGR03210 191 -----------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYDT---AESREGVKAF-QE 247 (256)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHccC---hhHHHHHHHH-hc
Confidence 33789999999999999999987643321 111 244556666654 5999999999 59
Q ss_pred CCCCCCCCC
Q 017189 325 KDKNPKWKP 333 (375)
Q Consensus 325 k~r~P~w~~ 333 (375)
| |+|+|++
T Consensus 248 k-r~p~~~~ 255 (256)
T TIGR03210 248 K-RKPEFRK 255 (256)
T ss_pred c-CCCCCCC
Confidence 9 8899974
No 37
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.5e-53 Score=399.19 Aligned_cols=254 Identities=25% Similarity=0.392 Sum_probs=219.6
Q ss_pred CCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-h---
Q 017189 7 QEDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E--- 81 (375)
Q Consensus 7 ~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~--- 81 (375)
+|+.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT 82 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence 3677999985 7899999999999999999999999999999999999999999999999999999998753211 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHH
Q 017189 82 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFG 160 (375)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a 160 (375)
.......+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++| .++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11223345677888999999999999999999999999999999999999999999999999988766 4888889 679
Q ss_pred HHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 161 EYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 161 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
+++++||+.|+|+||+++|||++|||++++.. ++.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 196 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEA--QVE------------------------------------------- 196 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999877633 222
Q ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHH-HHHHHHHHhhCCCcchHHhhHh
Q 017189 241 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIR-EYRMVCHVMMGEVSKDFFEGCR 319 (375)
Q Consensus 241 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~-e~~~~~~~~~~~~s~d~~egv~ 319 (375)
+.+++|++.||.+++.+|+.++.....++.+++.. +...+..++.+ +|++||++
T Consensus 197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~e~~~ 251 (265)
T PRK05674 197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVS---AEGQEGLR 251 (265)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 23789999999999999999999888888888765 44566667754 59999999
Q ss_pred hhhccCCCCCCCCC
Q 017189 320 AILLDKDKNPKWKP 333 (375)
Q Consensus 320 A~l~ek~r~P~w~~ 333 (375)
+| ++| |+|+|+.
T Consensus 252 af-~~k-r~p~~~~ 263 (265)
T PRK05674 252 AF-LEK-RTPAWQT 263 (265)
T ss_pred HH-Hcc-CCCCCCC
Confidence 99 598 8899974
No 38
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=7.6e-53 Score=396.22 Aligned_cols=251 Identities=27% Similarity=0.423 Sum_probs=220.1
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchhhHHHHH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSK 88 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (375)
.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........+...
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG 82 (261)
T ss_pred eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence 5889999999999999996 5999999999999999999999999999999999 7999999999875432211122222
Q ss_pred HHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcC
Q 017189 89 EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTG 167 (375)
Q Consensus 89 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG 167 (375)
....+.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..++++++||
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g 162 (261)
T PRK03580 83 GFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTG 162 (261)
T ss_pred hhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhC
Confidence 344567889999999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred CccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILS 247 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 247 (375)
++++|+||+++|||+++||++++.+ ++.
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------------- 190 (261)
T PRK03580 163 RRMDAEEALRWGIVNRVVPQAELMD--RAR-------------------------------------------------- 190 (261)
T ss_pred CccCHHHHHHcCCCcEecCHhHHHH--HHH--------------------------------------------------
Confidence 9999999999999999999887743 222
Q ss_pred HHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHH----HHHHHhhCCCcchHHhhHhhhhc
Q 017189 248 ALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYR----MVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 248 ~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~----~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+.+++|++.||.+++.+|++++.....++.++++.|.. .+..++.++ |++||+++| +
T Consensus 191 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---d~~e~~~af-~ 251 (261)
T PRK03580 191 ---------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSE---DALEGPRAF-A 251 (261)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCc---cHHHHHHHH-h
Confidence 22689999999999999999998888889999998864 666777655 999999999 5
Q ss_pred cCCCCCCCCC
Q 017189 324 DKDKNPKWKP 333 (375)
Q Consensus 324 ek~r~P~w~~ 333 (375)
+| |+|+|++
T Consensus 252 ek-r~~~~~~ 260 (261)
T PRK03580 252 EK-RDPVWKG 260 (261)
T ss_pred cC-CCCCCCC
Confidence 99 8899975
No 39
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=5.5e-53 Score=396.64 Aligned_cols=252 Identities=21% Similarity=0.320 Sum_probs=216.4
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccc-hh-hH
Q 017189 9 DQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGIN-EG-AK 84 (375)
Q Consensus 9 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-~~-~~ 84 (375)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... .. ..
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 4578888 899999999999999999999999999999999999999999999999 89999999997643211 11 11
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
.......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l 161 (259)
T TIGR01929 82 HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREI 161 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHH
Confidence 1112345777889999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
++||++++|+||+++||||+|||++++.. .+.
T Consensus 162 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~---------------------------------------------- 193 (259)
T TIGR01929 162 WFLCRQYDAEQALDMGLVNTVVPLADLEK--ETV---------------------------------------------- 193 (259)
T ss_pred HHhCCccCHHHHHHcCCcccccCHHHHHH--HHH----------------------------------------------
Confidence 99999999999999999999999877633 222
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhc
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+.+++|++.||.+++.+|++++..... ....+..|...+..++.++ |++||+++| .
T Consensus 194 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~---d~~egi~af-~ 249 (259)
T TIGR01929 194 -------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTE---EGQEGRNAF-L 249 (259)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCc---cHHHHHHHH-h
Confidence 237899999999999999999876443 4555566777777777655 999999999 5
Q ss_pred cCCCCCCCCC
Q 017189 324 DKDKNPKWKP 333 (375)
Q Consensus 324 ek~r~P~w~~ 333 (375)
+| |+|+|+.
T Consensus 250 ~k-r~p~~~~ 258 (259)
T TIGR01929 250 EK-RQPDFSK 258 (259)
T ss_pred cc-CCCCCCC
Confidence 99 8999974
No 40
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-53 Score=399.05 Aligned_cols=256 Identities=27% Similarity=0.414 Sum_probs=225.6
Q ss_pred CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh--
Q 017189 6 SQEDQVLEEETS-FVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-- 82 (375)
Q Consensus 6 ~~~~~v~~~~~~-~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 82 (375)
++++.|.+++++ +|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 567789999998 99999999999999999999999999999999999999999999999999999999875422110
Q ss_pred -----hHHH----HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHh
Q 017189 83 -----AKFF----SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLS 153 (375)
Q Consensus 83 -----~~~~----~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~ 153 (375)
..+. ..+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 0111 1224456788999999999999999999999999999999999999999999999999999999999
Q ss_pred hcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHH
Q 017189 154 RLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDV 232 (375)
Q Consensus 154 rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (375)
|++| .++++|++||+.++|++|+++||||++||++++.. ++.
T Consensus 162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------- 204 (272)
T PRK06210 162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELME--RTL----------------------------------- 204 (272)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--HHH-----------------------------------
Confidence 9999 56999999999999999999999999999877632 222
Q ss_pred HHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhc-CCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCc
Q 017189 233 IDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKA-SPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVS 311 (375)
Q Consensus 233 i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s 311 (375)
+.+++|++. +|.++..+|+.+++....++.++++.|...+..++.++
T Consensus 205 ------------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~-- 252 (272)
T PRK06210 205 ------------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRP-- 252 (272)
T ss_pred ------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCc--
Confidence 236888875 99999999999999888899999999999999888755
Q ss_pred chHHhhHhhhhccCCCCCCCCC
Q 017189 312 KDFFEGCRAILLDKDKNPKWKP 333 (375)
Q Consensus 312 ~d~~egv~A~l~ek~r~P~w~~ 333 (375)
|++||+++| ++| |+|.|.+
T Consensus 253 -~~~egi~af-~~k-r~p~~~~ 271 (272)
T PRK06210 253 -DFIEGVASF-LEK-RPPRFPG 271 (272)
T ss_pred -cHHHHHHHH-hcc-CCCCCCC
Confidence 999999999 599 8899974
No 41
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-53 Score=397.74 Aligned_cols=252 Identities=23% Similarity=0.335 Sum_probs=216.6
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch---
Q 017189 6 SQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE--- 81 (375)
Q Consensus 6 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--- 81 (375)
.+++.|.+++ .++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++......
T Consensus 8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 87 (268)
T PRK07327 8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEV 87 (268)
T ss_pred CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHH
Confidence 4578899998 589999999999999999999999999999999999999999999999999999999987543211
Q ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHH
Q 017189 82 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFG 160 (375)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a 160 (375)
...++.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (268)
T PRK07327 88 RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKA 167 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHH
Confidence 1233444567788899999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred HHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 161 EYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 161 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
+++++||++++|+||+++|||++++|++++.+ +++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 202 (268)
T PRK07327 168 KYYLLLCEPVSGEEAERIGLVSLAVDDDELLP--KAL------------------------------------------- 202 (268)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCHHHHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999887733 332
Q ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhhCCCcchHHhh
Q 017189 241 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL---QGVGQCLIREYRMVCHVMMGEVSKDFFEG 317 (375)
Q Consensus 241 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~---~~l~~~l~~e~~~~~~~~~~~~s~d~~eg 317 (375)
+.+++|++.||.+++.+|++++.... ..+++.+..|. ..+. ++|++||
T Consensus 203 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~eg 253 (268)
T PRK07327 203 ----------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVREG 253 (268)
T ss_pred ----------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHHHH
Confidence 23789999999999999999986532 23555544442 3454 4599999
Q ss_pred HhhhhccCCCCCCCCC
Q 017189 318 CRAILLDKDKNPKWKP 333 (375)
Q Consensus 318 v~A~l~ek~r~P~w~~ 333 (375)
+++| ++| |+|+|++
T Consensus 254 ~~af-~ek-r~p~~~~ 267 (268)
T PRK07327 254 LASL-REK-RAPDFPG 267 (268)
T ss_pred HHHH-Hhc-CCCCCCC
Confidence 9999 599 8999975
No 42
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=394.04 Aligned_cols=251 Identities=26% Similarity=0.406 Sum_probs=222.3
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-h-h-h
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-E-G-A 83 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~-~-~ 83 (375)
.|+.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... . . .
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 80 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR 80 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence 4667999999999999999998 599999999999999999999999999999999999999999998754311 1 1 2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
.+.....+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |+++++++++| .++++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~ 157 (257)
T PRK06495 81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRR 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHH
Confidence 333445677888999999999999999999999999999999999999999999999996 45678999999 67999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|+++|+.++|+||+++||||++||++++.. .+.
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~--~a~--------------------------------------------- 190 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMP--EAM--------------------------------------------- 190 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999999887633 222
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.++++++.||.+++.+|++++.....++.++++.|...+..++.++ |++||+++|
T Consensus 191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~---d~~egi~af- 246 (257)
T PRK06495 191 --------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTE---DAKEAQRAF- 246 (257)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---HHHHHHHHH-
Confidence 23789999999999999999998888899999999999999988755 999999999
Q ss_pred ccCCCCCCCCC
Q 017189 323 LDKDKNPKWKP 333 (375)
Q Consensus 323 ~ek~r~P~w~~ 333 (375)
++| |+|+|++
T Consensus 247 ~~k-r~p~~~~ 256 (257)
T PRK06495 247 LEK-RPPVFKG 256 (257)
T ss_pred hcc-CCCCCCC
Confidence 599 8999975
No 43
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.8e-52 Score=396.29 Aligned_cols=249 Identities=23% Similarity=0.339 Sum_probs=218.2
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc-hh--
Q 017189 6 SQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN-EG-- 82 (375)
Q Consensus 6 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~-- 82 (375)
..|+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++..... ..
T Consensus 5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence 347889999999999999999999999999999999999999999999999999999999999999998743211 11
Q ss_pred --hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HH
Q 017189 83 --AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FF 159 (375)
Q Consensus 83 --~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~ 159 (375)
..+....+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .+
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 122234456778899999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCc
Q 017189 160 GEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR 239 (375)
Q Consensus 160 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 239 (375)
+++|++||++++|+||+++|||++|||++++.....
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 200 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTR-------------------------------------------- 200 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999888743222
Q ss_pred CCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHH--HHHhhCCCcc-hHHh
Q 017189 240 RTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMV--CHVMMGEVSK-DFFE 316 (375)
Q Consensus 240 ~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~--~~~~~~~~s~-d~~e 316 (375)
+.+++|++.||.+++.+|++++.....++.+.++.|.... ..++. ++ |++|
T Consensus 201 -----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~e 254 (275)
T PRK09120 201 -----------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREE 254 (275)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHH
Confidence 2378999999999999999999988889999998886543 33453 45 8999
Q ss_pred hHhhhhccC
Q 017189 317 GCRAILLDK 325 (375)
Q Consensus 317 gv~A~l~ek 325 (375)
|+++|+ +|
T Consensus 255 g~~afl-~k 262 (275)
T PRK09120 255 GLKQFL-DD 262 (275)
T ss_pred HHHHHH-hc
Confidence 999995 77
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.6e-52 Score=393.88 Aligned_cols=254 Identities=20% Similarity=0.302 Sum_probs=222.3
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeC-C-CCccccCCchhHhhccchhhH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGK-G-RAFCAGGDVAAVVRGINEGAK 84 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~-g-~~F~aG~Dl~~~~~~~~~~~~ 84 (375)
.++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +|+|||||. | ++||+|+|++++.....+...
T Consensus 2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~ 80 (261)
T PRK11423 2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS 80 (261)
T ss_pred CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHH
Confidence 3667999999999999999999999999999999999999999987 999999996 3 899999999987542211123
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++| ..++++
T Consensus 81 ~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l 160 (261)
T PRK11423 81 YDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEM 160 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHH
Confidence 4445567888899999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
+++|++++|+||+++||||+|||++++.. .+.
T Consensus 161 ~l~g~~~~a~eA~~~GLv~~vv~~~~l~~--~a~---------------------------------------------- 192 (261)
T PRK11423 161 FFTASPITAQRALAVGILNHVVEVEELED--FTL---------------------------------------------- 192 (261)
T ss_pred HHcCCCcCHHHHHHcCCcCcccCHHHHHH--HHH----------------------------------------------
Confidence 99999999999999999999999877643 222
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhc-CCH-HHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGV-GQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~l-~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.++++++.||.+++.+|+.++.... ..+ ...++.|...+..++.++ |++||+.+|
T Consensus 193 -------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~~eg~~af 250 (261)
T PRK11423 193 -------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSE---DYQEGMNAF 250 (261)
T ss_pred -------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCCh---hHHHHHHHH
Confidence 33789999999999999999986543 344 688888888888888655 999999999
Q ss_pred hccCCCCCCCCC
Q 017189 322 LLDKDKNPKWKP 333 (375)
Q Consensus 322 l~ek~r~P~w~~ 333 (375)
.+| |+|+|++
T Consensus 251 -~~k-r~p~~~~ 260 (261)
T PRK11423 251 -LEK-RKPVFVG 260 (261)
T ss_pred -hcc-CCCCCCC
Confidence 599 8999975
No 45
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-52 Score=400.88 Aligned_cols=254 Identities=24% Similarity=0.323 Sum_probs=218.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhc---c-----
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRG---I----- 79 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~----- 79 (375)
++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|+++|+|||||.|++||+|+|++++... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999987421 0
Q ss_pred -------c-h--hhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHH
Q 017189 80 -------N-E--GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGAS 149 (375)
Q Consensus 80 -------~-~--~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~ 149 (375)
. . ...+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 0 01222334467788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhh
Q 017189 150 YFLSRLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYH 228 (375)
Q Consensus 150 ~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
++|+|++| .++++|++||++++|+||+++||||+|||++++.. .++
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~--~a~------------------------------- 209 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLP--AAR------------------------------- 209 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHH--HHH-------------------------------
Confidence 99999999 67999999999999999999999999999877632 332
Q ss_pred HHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhc-CCchHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHH
Q 017189 229 WMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKA-SPTSLKISLRSIREGRL--QGVGQCLIREYRMVCHV 305 (375)
Q Consensus 229 ~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~a~~~~k~~l~~~~~--~~l~~~l~~e~~~~~~~ 305 (375)
+.+++|+.. +|.+++.+|++++.... ..+. ....|...+..+
T Consensus 210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~ 254 (296)
T PRK08260 210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSR 254 (296)
T ss_pred ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHH
Confidence 236888885 99999999999987642 2344 345677777777
Q ss_pred hhCCCcchHHhhHhhhhccCCCCCCCCCC
Q 017189 306 MMGEVSKDFFEGCRAILLDKDKNPKWKPS 334 (375)
Q Consensus 306 ~~~~~s~d~~egv~A~l~ek~r~P~w~~~ 334 (375)
+.+ +|++||+++| ++| |+|+|+++
T Consensus 255 ~~~---~d~~egi~af-~~k-r~p~f~~~ 278 (296)
T PRK08260 255 GRS---GDGKEGVSSF-LEK-RPAVFPGK 278 (296)
T ss_pred ccC---hhHHHHHHHH-hcC-CCCCCCCC
Confidence 765 4999999999 598 89999875
No 46
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-52 Score=396.16 Aligned_cols=257 Identities=22% Similarity=0.331 Sum_probs=220.0
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc----
Q 017189 6 SQEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN---- 80 (375)
Q Consensus 6 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---- 80 (375)
.+++.|.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence 3566788887 78999999999999999999999999999999999999999999999999999999998743110
Q ss_pred -hh---hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCC-CccHHHHHhhc
Q 017189 81 -EG---AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFP-DIGASYFLSRL 155 (375)
Q Consensus 81 -~~---~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~l~rl 155 (375)
.. ......+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 01 12233455677888999999999999999999999999999999999999999999999997 78899999999
Q ss_pred ch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHH
Q 017189 156 PG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVID 234 (375)
Q Consensus 156 ~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 234 (375)
+| .++++|++||++++|+||+++|||+++||++++.+ ++.
T Consensus 166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------- 206 (276)
T PRK05864 166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLD--TCY------------------------------------- 206 (276)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHH--HHH-------------------------------------
Confidence 99 57999999999999999999999999999887633 222
Q ss_pred HHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcC-CHHHHHHHHHHHHH-HHhhCCCcc
Q 017189 235 KCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQ-GVGQCLIREYRMVC-HVMMGEVSK 312 (375)
Q Consensus 235 ~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~-~l~~~l~~e~~~~~-~~~~~~~s~ 312 (375)
+.+++|+..||.+++.+|+.++..... ++.+.+..|..... ..+. ++
T Consensus 207 ----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~~ 255 (276)
T PRK05864 207 ----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---TA 255 (276)
T ss_pred ----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---Ch
Confidence 237899999999999999999877664 78888888765332 2454 45
Q ss_pred hHHhhHhhhhccCCCCCCCCCC
Q 017189 313 DFFEGCRAILLDKDKNPKWKPS 334 (375)
Q Consensus 313 d~~egv~A~l~ek~r~P~w~~~ 334 (375)
|++||+++| .+| |+|+|++.
T Consensus 256 d~~e~~~af-~~k-r~p~~~~~ 275 (276)
T PRK05864 256 NFEEAVAAR-AEK-RPPVFTDD 275 (276)
T ss_pred hHHHHHHHH-hcc-CCCCCCCC
Confidence 999999999 599 88999753
No 47
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-52 Score=388.46 Aligned_cols=247 Identities=24% Similarity=0.359 Sum_probs=220.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEF 90 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (375)
|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ...+...++
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~--~~~~~~~~~ 79 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF--AIDLRETFY 79 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh--HHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999999999999875321 123344556
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCcc
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARL 170 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i 170 (375)
.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.+++++++||+++
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g~~~ 159 (248)
T PRK06072 80 PIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEF 159 (248)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhCCcc
Confidence 77888999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHHh
Q 017189 171 DGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSALE 250 (375)
Q Consensus 171 ~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~ 250 (375)
+|+||+++||||.+ + ++ +.++.
T Consensus 160 ~a~eA~~~Glv~~~-~--~~--~~~a~----------------------------------------------------- 181 (248)
T PRK06072 160 TAEEAERWGLLKIS-E--DP--LSDAE----------------------------------------------------- 181 (248)
T ss_pred CHHHHHHCCCcccc-c--hH--HHHHH-----------------------------------------------------
Confidence 99999999999953 2 33 22222
Q ss_pred hcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCCCC
Q 017189 251 SESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKNPK 330 (375)
Q Consensus 251 ~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~P~ 330 (375)
+.++++++.||.+++.+|++++......+.+.++.|...+..++.++ |++||+++| .+| |+|+
T Consensus 182 ------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~k-r~p~ 244 (248)
T PRK06072 182 ------------EMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTE---DFKEGISSF-KEK-REPK 244 (248)
T ss_pred ------------HHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCCh---hHHHHHHHH-hcC-CCCC
Confidence 33789999999999999999998878889999999999999988755 999999999 598 8999
Q ss_pred CCCC
Q 017189 331 WKPS 334 (375)
Q Consensus 331 w~~~ 334 (375)
|+++
T Consensus 245 ~~~~ 248 (248)
T PRK06072 245 FKGI 248 (248)
T ss_pred CCCC
Confidence 9863
No 48
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-52 Score=392.49 Aligned_cols=250 Identities=26% Similarity=0.381 Sum_probs=218.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh--hH
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG--AK 84 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~~ 84 (375)
.+.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++....... ..
T Consensus 7 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 86 (262)
T PRK06144 7 TDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVA 86 (262)
T ss_pred CCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHH
Confidence 55799999999999999999999999999999999999999999999999999999 7999999999875432111 23
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccc-cCCCCCccHHHHHhhcch-HHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETA-LGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~-~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
+...+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++| ..+++
T Consensus 87 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~ 166 (262)
T PRK06144 87 YERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKD 166 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999997 999999999999999999 67999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
+++||+.++|+||+++||||+|||++++.+ +++
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------- 199 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDA--RAD--------------------------------------------- 199 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999999877633 222
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.+++|++.||.+++.+|+.++......+ ..+.+.+..++.++ |++||+++|
T Consensus 200 --------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~~---~~~e~~~af- 251 (262)
T PRK06144 200 --------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYMSE---DFREGVEAF- 251 (262)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhcCh---HHHHHHHHH-
Confidence 33789999999999999999987655544 34456667777654 999999999
Q ss_pred ccCCCCCCCCC
Q 017189 323 LDKDKNPKWKP 333 (375)
Q Consensus 323 ~ek~r~P~w~~ 333 (375)
.+| |+|+|++
T Consensus 252 ~~k-r~p~~~~ 261 (262)
T PRK06144 252 LEK-RPPKWKG 261 (262)
T ss_pred hcC-CCCCCCC
Confidence 598 8899975
No 49
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=3.9e-52 Score=393.68 Aligned_cols=255 Identities=22% Similarity=0.350 Sum_probs=219.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchhhHH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKF 85 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 85 (375)
+++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 90 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG 90 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence 467899999999999999999999999999999999999999999999999999999 6999999999874321111110
Q ss_pred HH--HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHH
Q 017189 86 FS--KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 86 ~~--~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
.. ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| .++++
T Consensus 91 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~ 170 (273)
T PRK07396 91 VPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKARE 170 (273)
T ss_pred hhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHH
Confidence 11 2345677889999999999999999999999999999999999999999999999999999999999999 57999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
|++||+.++|+||+++||||+|||++++.+ .+.
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~--~a~--------------------------------------------- 203 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEK--ETV--------------------------------------------- 203 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999999877633 222
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.+++|++.||.+++.+|++++.... .+....+.|...+..++.++ |++||+++|
T Consensus 204 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~---d~~egi~af- 258 (273)
T PRK07396 204 --------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMTE---EAQEGRNAF- 258 (273)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-
Confidence 23789999999999999999987644 45555556777777777654 999999999
Q ss_pred ccCCCCCCCCCC
Q 017189 323 LDKDKNPKWKPS 334 (375)
Q Consensus 323 ~ek~r~P~w~~~ 334 (375)
.+| |+|+|++.
T Consensus 259 ~~k-r~p~~~~~ 269 (273)
T PRK07396 259 NEK-RQPDFSKF 269 (273)
T ss_pred hCC-CCCCCCCC
Confidence 599 89999863
No 50
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-52 Score=390.99 Aligned_cols=245 Identities=24% Similarity=0.350 Sum_probs=218.6
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hHH
Q 017189 9 DQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AKF 85 (375)
Q Consensus 9 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~ 85 (375)
.++.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..+
T Consensus 6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (256)
T PRK06143 6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAF 85 (256)
T ss_pred ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHH
Confidence 3577774 689999999999999999999999999999999999999999999999 7999999999875432211 334
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHh
Q 017189 86 FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVG 164 (375)
Q Consensus 86 ~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ 164 (375)
...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |++|++++|++++| .++++++
T Consensus 86 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~ 164 (256)
T PRK06143 86 ISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLL 164 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHH
Confidence 555677888999999999999999999999999999999999999999999999998 88888999999999 5799999
Q ss_pred hcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHH
Q 017189 165 LTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEE 244 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~e 244 (375)
+||+.++|+||+++||||++||++++.. .+.
T Consensus 165 l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------------- 195 (256)
T PRK06143 165 LTGETIDAAQALAWGLVDRVVPLAELDA--AVE----------------------------------------------- 195 (256)
T ss_pred HcCCcCCHHHHHHCCCcCeecCHHHHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999887643 221
Q ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhcc
Q 017189 245 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 324 (375)
Q Consensus 245 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~e 324 (375)
+.+++++..||.+++.+|++++.....++.+.+..|...+..++.++ |++||+++| ++
T Consensus 196 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~e~~~af-~e 253 (256)
T PRK06143 196 ------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTG---EPQRHMAAF-LN 253 (256)
T ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCh---HHHHHHHHH-Hh
Confidence 23789999999999999999999888899999999999999988755 999999999 48
Q ss_pred C
Q 017189 325 K 325 (375)
Q Consensus 325 k 325 (375)
|
T Consensus 254 k 254 (256)
T PRK06143 254 R 254 (256)
T ss_pred h
Confidence 8
No 51
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-52 Score=391.26 Aligned_cols=251 Identities=25% Similarity=0.375 Sum_probs=221.5
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh-hHH-
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-AKF- 85 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~- 85 (375)
++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ..+
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLF 81 (262)
T ss_pred CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHh
Confidence 456899999999999999999999999999999999999999999999999999999999999999876432111 111
Q ss_pred ------HHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-H
Q 017189 86 ------FSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-F 158 (375)
Q Consensus 86 ------~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~ 158 (375)
...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++| .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 161 (262)
T PRK07509 82 KRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD 161 (262)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence 122345666788999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhC
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 238 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 238 (375)
.++++++||++++|+||+++||||++|++ + ..++.
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~--~~~a~----------------------------------------- 196 (262)
T PRK07509 162 VARELTYTARVFSAEEALELGLVTHVSDD--P--LAAAL----------------------------------------- 196 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCChhhhhch--H--HHHHH-----------------------------------------
Confidence 79999999999999999999999999954 2 11221
Q ss_pred cCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhH
Q 017189 239 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 318 (375)
Q Consensus 239 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv 318 (375)
+.++++++.||.++..+|++++.....++.+++..|.+.+..++.++ |++||+
T Consensus 197 ------------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---d~~e~~ 249 (262)
T PRK07509 197 ------------------------ALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGK---NQKIAV 249 (262)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCh---hHHHHH
Confidence 33789999999999999999999888889999999999999998765 999999
Q ss_pred hhhhccCCCCCCCC
Q 017189 319 RAILLDKDKNPKWK 332 (375)
Q Consensus 319 ~A~l~ek~r~P~w~ 332 (375)
++| .+| |+|.|+
T Consensus 250 ~af-~ek-r~p~~~ 261 (262)
T PRK07509 250 KAQ-MKK-RAPKFL 261 (262)
T ss_pred HHH-hcC-CCCCCC
Confidence 999 599 889996
No 52
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-52 Score=388.66 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=221.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch-h----
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE-G---- 82 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~---- 82 (375)
++.+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987542211 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 83 AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 83 ~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
..+.+.+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++| ..++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 123344567788899999999999999999999999999999999999999999999999999999999999999 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||++||++++.+...
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 194 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTCE---------------------------------------------- 194 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877633222
Q ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 242 VEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 242 ~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.++++++.+|.+++.+|+.++.....++.+.+..|...+..++.++ |++||+++|
T Consensus 195 ---------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~e~~~af 250 (255)
T PRK07260 195 ---------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKE---DFKEGVRAF 250 (255)
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 23789999999999999999999888899999999999999888654 999999999
Q ss_pred hccC
Q 017189 322 LLDK 325 (375)
Q Consensus 322 l~ek 325 (375)
.+|
T Consensus 251 -~~k 253 (255)
T PRK07260 251 -SER 253 (255)
T ss_pred -Hhc
Confidence 487
No 53
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.2e-51 Score=385.72 Aligned_cols=246 Identities=27% Similarity=0.356 Sum_probs=213.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEF 90 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (375)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++... ....+.....
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~--~~~~~~~~~~ 79 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD--QCAAMLASLH 79 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch--hHHHHHHHHH
Confidence 778889999999999997 5999999999999999999999999999999999999999999975321 1123334456
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCc
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGAR 169 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~ 169 (375)
+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++| ..+++|++||++
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~ 158 (251)
T TIGR03189 80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRS 158 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCC
Confidence 67888999999999999999999999999999999999999999999999999874 5789999999 679999999999
Q ss_pred cCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHH
Q 017189 170 LDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSAL 249 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L 249 (375)
++|+||+++|||++|+|+.+ ..++.
T Consensus 159 ~~a~eA~~~Glv~~v~~~~~----~~a~~--------------------------------------------------- 183 (251)
T TIGR03189 159 IDGAEGARIGLANAVAEDPE----NAALA--------------------------------------------------- 183 (251)
T ss_pred CCHHHHHHCCCcceecCcHH----HHHHH---------------------------------------------------
Confidence 99999999999999998532 12220
Q ss_pred hhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHH-HHHHHHHHHhhCCCcchHHhhHhhhhccCCCC
Q 017189 250 ESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLI-REYRMVCHVMMGEVSKDFFEGCRAILLDKDKN 328 (375)
Q Consensus 250 ~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~-~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~ 328 (375)
.+++++++.||.+++.+|++++.....++.+++. .|...+..++.++ |++||+++| .+| |+
T Consensus 184 -------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~---d~~eg~~af-~ek-r~ 245 (251)
T TIGR03189 184 -------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATH---DAVEGLNAF-LEK-RP 245 (251)
T ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCH---hHHHHHHHH-Hhc-CC
Confidence 1157899999999999999999887888887764 7777788888654 999999999 599 88
Q ss_pred CCCCC
Q 017189 329 PKWKP 333 (375)
Q Consensus 329 P~w~~ 333 (375)
|.|.+
T Consensus 246 p~~~~ 250 (251)
T TIGR03189 246 ALWED 250 (251)
T ss_pred CCCCC
Confidence 99975
No 54
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-52 Score=387.31 Aligned_cols=248 Identities=25% Similarity=0.298 Sum_probs=214.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSK 88 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (375)
+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++......... ...
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~-~~~ 81 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLH-PSG 81 (254)
T ss_pred ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhh-hhh
Confidence 3488999999999999999999999999999999999999999999999999999999999999987543211100 000
Q ss_pred HHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcC
Q 017189 89 EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTG 167 (375)
Q Consensus 89 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG 167 (375)
...+...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..+++++++|
T Consensus 82 ~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g 161 (254)
T PRK08259 82 DGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTG 161 (254)
T ss_pred cchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 111222334799999999999999999999999999999999999999999999999999999999999 5799999999
Q ss_pred CccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILS 247 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~ 247 (375)
+.++|+||+++||||+|||++++.+ .+.
T Consensus 162 ~~~~a~eA~~~Glv~~vv~~~~l~~--~a~-------------------------------------------------- 189 (254)
T PRK08259 162 RPVDADEALAIGLANRVVPKGQARA--AAE-------------------------------------------------- 189 (254)
T ss_pred CccCHHHHHHcCCCCEeeChhHHHH--HHH--------------------------------------------------
Confidence 9999999999999999999987743 222
Q ss_pred HHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCC
Q 017189 248 ALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDK 327 (375)
Q Consensus 248 ~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r 327 (375)
+.+++|++.||.+++.+|++++.....++.++++.|...+...+. + |++||+++|+ +|.|
T Consensus 190 ---------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~---d~~egi~af~-~~~~ 249 (254)
T PRK08259 190 ---------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-A---EALEGAARFA-AGAG 249 (254)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-h---HHHHHHHHHH-hhhc
Confidence 237899999999999999999988788899999999887777775 5 9999999995 7756
Q ss_pred CC
Q 017189 328 NP 329 (375)
Q Consensus 328 ~P 329 (375)
+|
T Consensus 250 ~~ 251 (254)
T PRK08259 250 RH 251 (254)
T ss_pred cc
Confidence 55
No 55
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2e-51 Score=387.05 Aligned_cols=253 Identities=27% Similarity=0.389 Sum_probs=219.7
Q ss_pred CCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHH
Q 017189 8 EDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
...|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~ 85 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKG--DVK 85 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccc--hhh
Confidence 44678886 799999999999999999999999999999999999999999999999999999999986532111 111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
....+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .++++|++
T Consensus 86 ~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 165 (265)
T PLN02888 86 DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSL 165 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHH
Confidence 12245667789999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++||||++||++++.+ ++.
T Consensus 166 tg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 195 (265)
T PLN02888 166 TAMPLTAETAERWGLVNHVVEESELLK--KAR------------------------------------------------ 195 (265)
T ss_pred hCCccCHHHHHHcCCccEeeChHHHHH--HHH------------------------------------------------
Confidence 999999999999999999999877633 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.++++++.+|.+++.+|++++.....++.+++..|...+..++.. .++|++||+++| ++|
T Consensus 196 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~-~~~d~~e~~~af-~ek 256 (265)
T PLN02888 196 -----------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNG-MTKEQFQKMQEF-IAG 256 (265)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHH-Hhc
Confidence 3378999999999999999999888889999999998887777631 246999999999 598
Q ss_pred CCCCCCC
Q 017189 326 DKNPKWK 332 (375)
Q Consensus 326 ~r~P~w~ 332 (375)
|+|+=.
T Consensus 257 -r~~~~~ 262 (265)
T PLN02888 257 -RSSKKP 262 (265)
T ss_pred -CCCCCC
Confidence 777643
No 56
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=387.22 Aligned_cols=251 Identities=25% Similarity=0.344 Sum_probs=223.3
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhcc-chh---h
Q 017189 8 EDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI-NEG---A 83 (375)
Q Consensus 8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~---~ 83 (375)
+..+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... ... .
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999875421 111 2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYV 163 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l 163 (375)
.+...+.+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++++..++++
T Consensus 85 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~l 164 (260)
T PRK07827 85 ARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARY 164 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHHH
Confidence 34455677888999999999999999999999999999999999999999999999999999999999999877789999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVE 243 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 243 (375)
+++|+.++|++|+++|||++++++ +.. .+.
T Consensus 165 ~l~g~~~~a~eA~~~Glv~~v~~~--l~~--~a~---------------------------------------------- 194 (260)
T PRK07827 165 YLTGEKFGAAEAARIGLVTAAADD--VDA--AVA---------------------------------------------- 194 (260)
T ss_pred HHhCCccCHHHHHHcCCcccchHH--HHH--HHH----------------------------------------------
Confidence 999999999999999999999742 422 111
Q ss_pred HHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhc
Q 017189 244 EILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILL 323 (375)
Q Consensus 244 ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ 323 (375)
+.++++++.||.+++.+|+++++.....+.+.++.|...+..++.++ |++||+++| .
T Consensus 195 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~af-~ 251 (260)
T PRK07827 195 -------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVSD---EAREGMTAF-L 251 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHH-h
Confidence 33789999999999999999999888899999999999999988755 999999999 5
Q ss_pred cCCCCCCCC
Q 017189 324 DKDKNPKWK 332 (375)
Q Consensus 324 ek~r~P~w~ 332 (375)
+| |+|+|+
T Consensus 252 ~k-r~p~~~ 259 (260)
T PRK07827 252 QK-RPPRWA 259 (260)
T ss_pred cC-CCCCCC
Confidence 98 789995
No 57
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=386.07 Aligned_cols=244 Identities=22% Similarity=0.350 Sum_probs=215.6
Q ss_pred cEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHH
Q 017189 10 QVLEEETSF---VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 10 ~v~~~~~~~---v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
.|.++++++ |++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.........+.
T Consensus 4 ~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (251)
T PRK06023 4 HILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFG 83 (251)
T ss_pred eEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhH
Confidence 588888774 99999999999999999999999999999999999999999999999999999998754321112333
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
..+.+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++| .+++++++
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l 163 (251)
T PRK06023 84 SEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLA 163 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHH
Confidence 44557788899999999999999999999999999999999999999999999999999999999999999 67999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||+.++|+||+++|||+++||++++.. ++.
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 193 (251)
T PRK06023 164 LGEGFSAEAAQEAGLIWKIVDEEAVEA--ETL------------------------------------------------ 193 (251)
T ss_pred hCCCCCHHHHHHcCCcceeeCHHHHHH--HHH------------------------------------------------
Confidence 999999999999999999999877643 222
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.+++|++.||.+++.+|++++... ..+.+.++.|...+..++.++ |++||+++|+ +|
T Consensus 194 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~---~~~e~~~af~-e~ 251 (251)
T PRK06023 194 -----------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKSA---EARAAFEAFM-RR 251 (251)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCH---HHHHHHHHHh-cC
Confidence 3378999999999999999998764 468889999988888888655 9999999994 64
No 58
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-51 Score=381.55 Aligned_cols=240 Identities=22% Similarity=0.324 Sum_probs=213.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEF 90 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (375)
|.++++++|++||||||++.|++|.+|+.+|.++++.++.+ ++|+|||||.|++||+|+|+++... ...+...+.
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~----~~~~~~~~~ 76 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY----ADDFPDALI 76 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh----HHHHHHHHH
Confidence 67888999999999999999999999999999999999865 8999999999999999999985321 123444556
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCc
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGAR 169 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~ 169 (375)
+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| ..+++|++||++
T Consensus 77 ~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~ 156 (243)
T PRK07854 77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEK 156 (243)
T ss_pred HHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999 579999999999
Q ss_pred cCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHH
Q 017189 170 LDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSAL 249 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L 249 (375)
++|+||+++|||++|++ ++ ++.
T Consensus 157 ~~a~eA~~~Glv~~v~~---~~---~a~---------------------------------------------------- 178 (243)
T PRK07854 157 LTAEQALATGMANRIGT---LA---DAQ---------------------------------------------------- 178 (243)
T ss_pred cCHHHHHHCCCcccccC---HH---HHH----------------------------------------------------
Confidence 99999999999999975 21 222
Q ss_pred hhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCCC
Q 017189 250 ESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKNP 329 (375)
Q Consensus 250 ~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~P 329 (375)
+.+++|++.||.+++.+|+.++.. ..++++++.|...+..++.++ |++||+++| .+| |+|
T Consensus 179 -------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~---d~~eg~~af-~~k-r~p 238 (243)
T PRK07854 179 -------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQ---DAIEAQVAR-IEK-RPP 238 (243)
T ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCc---hHHHHHHHH-hCC-CCC
Confidence 236899999999999999999875 678999999999998888765 999999999 598 889
Q ss_pred CCCC
Q 017189 330 KWKP 333 (375)
Q Consensus 330 ~w~~ 333 (375)
.|++
T Consensus 239 ~~~~ 242 (243)
T PRK07854 239 KFQG 242 (243)
T ss_pred CCCC
Confidence 9975
No 59
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.2e-51 Score=385.63 Aligned_cols=251 Identities=30% Similarity=0.499 Sum_probs=220.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhh-ccc-hhhH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVR-GIN-EGAK 84 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-~~~-~~~~ 84 (375)
++..+.++..++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||+|++||+|+|++.+.. ... ....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 82 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAEN 82 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875 111 1134
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++| ..+.+|
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l 162 (257)
T COG1024 83 LMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKEL 162 (257)
T ss_pred HHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHH
Confidence 5566677899999999999999999999999999999999999999999999999999998899999999999 579999
Q ss_pred hhcCCccCHHHHHHcCccceecCC-ccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPS-SRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
++||+.++|+||+++|||+++|+. +++.. .+.
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~--~a~--------------------------------------------- 195 (257)
T COG1024 163 LLTGEPISAAEALELGLVDEVVPDAEELLE--RAL--------------------------------------------- 195 (257)
T ss_pred HHcCCcCCHHHHHHcCCcCeeeCCHHHHHH--HHH---------------------------------------------
Confidence 999999999999999999999986 46532 221
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+++++++. +|.++..+|+.++......+.+.+..|...+...+.+ +|++||+++|+
T Consensus 196 --------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~eg~~a~~ 251 (257)
T COG1024 196 --------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSS---EDFREGVRAFL 251 (257)
T ss_pred --------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcC---hhHHHHHHHHH
Confidence 22455555 9999999999999987766999999999998886654 59999999995
Q ss_pred ccCCCCCCC
Q 017189 323 LDKDKNPKW 331 (375)
Q Consensus 323 ~ek~r~P~w 331 (375)
+ |+|.|
T Consensus 252 -~--r~p~~ 257 (257)
T COG1024 252 -E--RKPVF 257 (257)
T ss_pred -c--cCCCC
Confidence 6 67987
No 60
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=385.47 Aligned_cols=244 Identities=24% Similarity=0.319 Sum_probs=217.5
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh-hHHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-AKFFS 87 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 87 (375)
..|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLR 82 (249)
T ss_pred ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999986532211 23345
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
.+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .+++++++|
T Consensus 83 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~lt 162 (249)
T PRK05870 83 RIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLF 162 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHh
Confidence 5566777899999999999999999999999999999999999999999999999999999999999999 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|++++|+||+++||||++| +++.. ++.
T Consensus 163 g~~~~a~eA~~~Glv~~vv--~~l~~--~a~------------------------------------------------- 189 (249)
T PRK05870 163 GMRFDAEAAVRHGLALMVA--DDPVA--AAL------------------------------------------------- 189 (249)
T ss_pred CCccCHHHHHHcCCHHHHH--hhHHH--HHH-------------------------------------------------
Confidence 9999999999999999999 44522 222
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.++++++.||.+++.+|++++.... ..+.++++.|...+...+.++ |++||+++|+ ++
T Consensus 190 ----------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af~-~~ 249 (249)
T PRK05870 190 ----------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQSP---EFAARLAAAQ-RR 249 (249)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcCh---hHHHHHHHHh-cC
Confidence 33789999999999999999998877 789999999999999988765 9999999995 53
No 61
>PLN02921 naphthoate synthase
Probab=100.00 E-value=6.8e-51 Score=392.53 Aligned_cols=254 Identities=22% Similarity=0.314 Sum_probs=215.6
Q ss_pred CCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-
Q 017189 7 QEDQVLEEE--TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG- 82 (375)
Q Consensus 7 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~- 82 (375)
+++.|.+++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.......
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~ 142 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP 142 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence 467888988 599999999999999999999999999999999999999999999999 8999999999874321111
Q ss_pred hHHHH-HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHH
Q 017189 83 AKFFS-KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFG 160 (375)
Q Consensus 83 ~~~~~-~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a 160 (375)
..... ...+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus 143 ~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A 222 (327)
T PLN02921 143 DDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKA 222 (327)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 11111 1235677889999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred HHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 161 EYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 161 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
++|+++|+.++|+||+++||||+|||++++.. ++.
T Consensus 223 ~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~--~a~------------------------------------------- 257 (327)
T PLN02921 223 REMWFLARFYTASEALKMGLVNTVVPLDELEG--ETV------------------------------------------- 257 (327)
T ss_pred HHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999887743 222
Q ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhh
Q 017189 241 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 320 (375)
Q Consensus 241 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A 320 (375)
+.+++|+++||.+++.+|++++..... .......+...+..++.+ +|++||+++
T Consensus 258 ----------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s---~d~~egi~A 311 (327)
T PLN02921 258 ----------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGS---EEGNEGRTA 311 (327)
T ss_pred ----------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 237899999999999999999876543 333333344666677755 599999999
Q ss_pred hhccCCCCCCCCC
Q 017189 321 ILLDKDKNPKWKP 333 (375)
Q Consensus 321 ~l~ek~r~P~w~~ 333 (375)
| ++| |+|+|+.
T Consensus 312 f-~ek-r~p~f~~ 322 (327)
T PLN02921 312 Y-LEG-RAPDFSK 322 (327)
T ss_pred H-hcc-CCCCCCC
Confidence 9 599 8999975
No 62
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-51 Score=391.71 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=214.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchh-Hhh---c---c
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAA-VVR---G---I 79 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~-~~~---~---~ 79 (375)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|++||+|+|+++ +.. . .
T Consensus 3 ~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~ 82 (298)
T PRK12478 3 DFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTD 82 (298)
T ss_pred CceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999986 211 0 0
Q ss_pred c--h-hhHH---HHH---HHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccccc-CCCCCccHH
Q 017189 80 N--E-GAKF---FSK---EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETAL-GLFPDIGAS 149 (375)
Q Consensus 80 ~--~-~~~~---~~~---~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~-G~~p~~g~~ 149 (375)
. . ...+ ... ...++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ +++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~ 160 (298)
T PRK12478 83 GRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGM 160 (298)
T ss_pred cccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhH
Confidence 0 0 0111 011 1235567889999999999999999999999999999999999999999997 8875 333
Q ss_pred HHHhhcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhh
Q 017189 150 YFLSRLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYH 228 (375)
Q Consensus 150 ~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
+ + +.+| .++++|++||++++|+||+++||||+|||++++.. ++.
T Consensus 161 ~-~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~--~a~------------------------------- 205 (298)
T PRK12478 161 W-L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEA--RVA------------------------------- 205 (298)
T ss_pred H-H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--HHH-------------------------------
Confidence 3 2 4578 67999999999999999999999999999988743 222
Q ss_pred HHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhh
Q 017189 229 WMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL-QGVGQCLIREYRMVCHVMM 307 (375)
Q Consensus 229 ~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~~ 307 (375)
+.+++|+..||.+++.+|++++.... .++.++++.|...+..++.
T Consensus 206 ----------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~ 251 (298)
T PRK12478 206 ----------------------------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN 251 (298)
T ss_pred ----------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 23789999999999999999998766 4699999999999999987
Q ss_pred CCCcchHH--------hhHhhhhccCCCCCCCCCCCc
Q 017189 308 GEVSKDFF--------EGCRAILLDKDKNPKWKPSKL 336 (375)
Q Consensus 308 ~~~s~d~~--------egv~A~l~ek~r~P~w~~~~~ 336 (375)
++ |++ ||++|| .+| |+|+|+.-+.
T Consensus 252 s~---d~~e~~~~~~~egv~Af-~ek-R~p~f~~~~~ 283 (298)
T PRK12478 252 TP---DALEFIRTAETQGVRAA-VER-RDGPFGDYSQ 283 (298)
T ss_pred Ch---hHHHHHHHHHHHHHHHH-HHh-cCCcccccCc
Confidence 55 997 599999 599 8999997653
No 63
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-50 Score=380.39 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=216.8
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh---h
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG---A 83 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~ 83 (375)
+++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++ +++|+|||||.|++||+|+|++++....... .
T Consensus 2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07112 2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL 79 (255)
T ss_pred CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence 4667999999999999999999999999999999999999998 3699999999999999999999876432211 1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
.....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +.+|++++| .++++
T Consensus 80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~ 158 (255)
T PRK07112 80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHY 158 (255)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHH
Confidence 1233445778889999999999999999999999999999999999999999999999999875 467899999 67999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
++++|++++|+||+++||||++||+++. ...
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~----------------------------------------------- 189 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR----------------------------------------------- 189 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999997542 111
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+.++++++.||.+++.+|++++.. ...+.+.++.|...+..++.++ |++||+++|
T Consensus 190 --------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~---~~~eg~~af- 244 (255)
T PRK07112 190 --------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFADP---ENLRKIARY- 244 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcCh---HHHHHHHHH-
Confidence 226899999999999999999875 5578999999999998888765 999999999
Q ss_pred ccCCCCCCCCC
Q 017189 323 LDKDKNPKWKP 333 (375)
Q Consensus 323 ~ek~r~P~w~~ 333 (375)
.+| |+|.|+.
T Consensus 245 ~~k-r~p~~~~ 254 (255)
T PRK07112 245 VET-GKFPWEA 254 (255)
T ss_pred HcC-CCCCCCC
Confidence 598 8899973
No 64
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=7e-51 Score=379.62 Aligned_cols=243 Identities=31% Similarity=0.517 Sum_probs=223.6
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh-hHHHHHHH
Q 017189 12 LEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-AKFFSKEF 90 (375)
Q Consensus 12 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~ 90 (375)
.++.+++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++||++|.|++||+|.|++++....... ..+...++
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999987763222 56777888
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCc
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGAR 169 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~ 169 (375)
.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..++++++||++
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~ 160 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEP 160 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 579999999999
Q ss_pred cCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHH
Q 017189 170 LDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSAL 249 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L 249 (375)
++|+||+++||||+++|++++.....
T Consensus 161 ~~a~eA~~~Glv~~v~~~~~l~~~a~------------------------------------------------------ 186 (245)
T PF00378_consen 161 ISAEEALELGLVDEVVPDEELDEEAL------------------------------------------------------ 186 (245)
T ss_dssp EEHHHHHHTTSSSEEESGGGHHHHHH------------------------------------------------------
T ss_pred chhHHHHhhcceeEEcCchhhhHHHH------------------------------------------------------
Confidence 99999999999999999988743222
Q ss_pred hhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccC
Q 017189 250 ESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 250 ~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek 325 (375)
+.+++++..||.+++.+|+.+++.....+.+.++.|.+.+..++.++ |++||+++| +||
T Consensus 187 -------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~f-~eK 245 (245)
T PF00378_consen 187 -------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSE---DFQEGIAAF-LEK 245 (245)
T ss_dssp -------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSH---HHHHHHHHH-HTT
T ss_pred -------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCH---HHHHHHHHH-hCc
Confidence 23789999999999999999999988899999999999999999755 999999999 487
No 65
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=378.65 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=210.2
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh--hHHHHHHHH
Q 017189 14 EETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG--AKFFSKEFI 91 (375)
Q Consensus 14 ~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~ 91 (375)
+++++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ..+......
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA 85 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHH
Confidence 4578999999999985 9999999999999999999999999999999999999999999875422111 122334456
Q ss_pred HHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCcc
Q 017189 92 LNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGARL 170 (375)
Q Consensus 92 l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~i 170 (375)
++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++| ..+++|++||+.+
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~ 162 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATI 162 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcC
Confidence 7788999999999999999999999999999999999999999999999986 45678999999 5799999999999
Q ss_pred CHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHHh
Q 017189 171 DGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEILSALE 250 (375)
Q Consensus 171 ~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~ 250 (375)
+|+||+++|||+++||++++.. .+.
T Consensus 163 ~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------------------- 187 (249)
T PRK07938 163 TAAELHHFGSVEEVVPRDQLDE--AAL----------------------------------------------------- 187 (249)
T ss_pred CHHHHHHCCCccEEeCHHHHHH--HHH-----------------------------------------------------
Confidence 9999999999999999877633 222
Q ss_pred hcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCCCCC
Q 017189 251 SESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKDKNP 329 (375)
Q Consensus 251 ~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~r~P 329 (375)
+.+++|+..||.+++.+|+.++.....++.+.++.|...+..++.++ |++||+++| .+| |+|
T Consensus 188 ------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---d~~eg~~af-~ek-r~p 249 (249)
T PRK07938 188 ------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAG---VSDEHRDAF-VEK-RKA 249 (249)
T ss_pred ------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---cHHHHHHHH-Hhc-CCC
Confidence 23789999999999999999998877889999999999988888655 999999999 598 666
No 66
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=3.2e-50 Score=385.44 Aligned_cols=254 Identities=21% Similarity=0.325 Sum_probs=215.8
Q ss_pred CCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-------CCccccCCchhHhhc
Q 017189 8 EDQVLEEE--TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-------RAFCAGGDVAAVVRG 78 (375)
Q Consensus 8 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-------~~F~aG~Dl~~~~~~ 78 (375)
+..|.+++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 55788888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred c------c--h--h-hHHH-HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEe-CCeEEeccccccCCCCC
Q 017189 79 I------N--E--G-AKFF-SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVAT-ENSVFAMPETALGLFPD 145 (375)
Q Consensus 79 ~------~--~--~-~~~~-~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~G~~p~ 145 (375)
. . . . .... .....+...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 0 0 0 0111 112345667889999999999999999999999999999999 69999999999999999
Q ss_pred ccHHHHHhhcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcc
Q 017189 146 IGASYFLSRLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDH 224 (375)
Q Consensus 146 ~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
+|++++|+|++| ..+++|++||+.++|+||+++|||+++||++++.. ++.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~--~a~--------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELET--EAL--------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHH--HHH---------------------------
Confidence 999999999999 57999999999999999999999999999887743 222
Q ss_pred hhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 017189 225 SAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCH 304 (375)
Q Consensus 225 ~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~ 304 (375)
+.+++|++.||.+++.+|++++.... .+.+....|...+..
T Consensus 233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 23789999999999999999987654 344455568888888
Q ss_pred HhhCCCcchHHhhHhhhhccCCCCCCCCCC
Q 017189 305 VMMGEVSKDFFEGCRAILLDKDKNPKWKPS 334 (375)
Q Consensus 305 ~~~~~~s~d~~egv~A~l~ek~r~P~w~~~ 334 (375)
++.++ |++||+++| ++| |+|.|+..
T Consensus 274 ~~~~~---d~~egi~af-~ek-r~p~~~~~ 298 (302)
T PRK08321 274 AYMTD---EAQEGRDAF-LEK-RDPDWSDF 298 (302)
T ss_pred HhcCH---HHHHHHHHH-hcc-CCCCCCCC
Confidence 88654 999999999 598 88999763
No 67
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=373.46 Aligned_cols=234 Identities=27% Similarity=0.337 Sum_probs=210.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
+++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++......... .
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~-~ 80 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGA-Q 80 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhH-H
Confidence 456799999999999999999999999999999999999999999999999999999999999999988643221111 2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
..+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 81 ~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 160 (258)
T PRK06190 81 DALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSL 160 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++||||+++|++++.+ .++
T Consensus 161 tg~~~~a~eA~~~GLv~~vv~~~~l~~--~a~------------------------------------------------ 190 (258)
T PRK06190 161 TGDFLDAADALRAGLVTEVVPHDELLP--RAR------------------------------------------------ 190 (258)
T ss_pred hCCccCHHHHHHcCCCeEecCHhHHHH--HHH------------------------------------------------
Confidence 999999999999999999999877633 322
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhC
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMG 308 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~ 308 (375)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.+
T Consensus 191 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 191 -----------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred -----------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 2378999999999999999999988889999999999999999876
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-49 Score=372.27 Aligned_cols=243 Identities=21% Similarity=0.288 Sum_probs=218.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHH
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFF 86 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 86 (375)
.+..+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.........+.
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFT 82 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999998754322112222
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhh
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGL 165 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~l 165 (375)
. ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| ..++++++
T Consensus 83 -~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~lll 160 (249)
T PRK07110 83 -E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLL 160 (249)
T ss_pred -h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHH
Confidence 2 56788899999999999999999999999999999999999999999999999999999999999999 57999999
Q ss_pred cCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 166 TGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 166 tG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
||++++|+||+++|||++||+++++.+ ++.
T Consensus 161 tg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------ 190 (249)
T PRK07110 161 TARYYRGAELKKRGVPFPVLPRAEVLE--KAL------------------------------------------------ 190 (249)
T ss_pred cCCccCHHHHHHcCCCeEEeChHHHHH--HHH------------------------------------------------
Confidence 999999999999999999999877632 332
Q ss_pred HHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh
Q 017189 246 LSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI 321 (375)
Q Consensus 246 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~ 321 (375)
+.++++++.||.+++.+|+.+++.....+.+.++.|...+..++.++ |++||++++
T Consensus 191 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~---~~~egi~~~ 246 (249)
T PRK07110 191 -----------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQP---EVKRRIESL 246 (249)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCH---hHHHHHHHh
Confidence 23789999999999999999999888999999999999999999765 999999985
No 69
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=8e-50 Score=378.42 Aligned_cols=247 Identities=19% Similarity=0.266 Sum_probs=217.0
Q ss_pred CCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC--CCccccCCchhHhhccchh-
Q 017189 7 QEDQVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG--RAFCAGGDVAAVVRGINEG- 82 (375)
Q Consensus 7 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g--~~F~aG~Dl~~~~~~~~~~- 82 (375)
..+.|.+++ .++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|.|++++.......
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~ 87 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA 87 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence 356899998 6999999999985 6999999999999999999999999999999998 6999999999875321111
Q ss_pred --hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCC-CCCccHHHHHhhcch-H
Q 017189 83 --AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGL-FPDIGASYFLSRLPG-F 158 (375)
Q Consensus 83 --~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~-~p~~g~~~~l~rl~g-~ 158 (375)
..+......++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++| .
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~ 167 (278)
T PLN03214 88 RYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRK 167 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHH
Confidence 223333345778899999999999999999999999999999999999999999999999 599999999999999 6
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhC
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 238 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 238 (375)
++++|++||+.++|+||+++||||++||++++.+ .++
T Consensus 168 ~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~----------------------------------------- 204 (278)
T PLN03214 168 VAESLLLRGRLVRPAEAKQLGLIDEVVPAAALME--AAA----------------------------------------- 204 (278)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCcEecChHHHHH--HHH-----------------------------------------
Confidence 7999999999999999999999999999877633 222
Q ss_pred cCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhH
Q 017189 239 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGC 318 (375)
Q Consensus 239 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv 318 (375)
+.+++|++.||.+++.+|++++......++++++.|...+..++.+ +|++||+
T Consensus 205 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~egi 257 (278)
T PLN03214 205 ------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSE---PSIIKAL 257 (278)
T ss_pred ------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence 2378999999999999999999888888999999999988888865 4999999
Q ss_pred hhhhccC
Q 017189 319 RAILLDK 325 (375)
Q Consensus 319 ~A~l~ek 325 (375)
++|+ ||
T Consensus 258 ~afl-ek 263 (278)
T PLN03214 258 GGVM-ER 263 (278)
T ss_pred HHHH-HH
Confidence 9994 86
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.8e-48 Score=395.79 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=220.4
Q ss_pred EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCceEEEEeeCCCC-ccccCCchhH
Q 017189 11 VLEEETSFVRILTLNRPRQL-------------NALSAQMISRLLELFQRYET-DSNVKLLILKGKGRA-FCAGGDVAAV 75 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~vr~vVltg~g~~-F~aG~Dl~~~ 75 (375)
+.++++++|++||||||++. |+||.+|+.+|.+++.+++. |+++|+|||||.|+. ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 45566899999999999999 99999999999999999984 599999999999977 9999999843
Q ss_pred hhccchh-hHHHHHHHHHHHHHHhCCCcEEEEE-ccccchhh-hhhhhcCCEEEE-------eCCeEEeccccccCCCCC
Q 017189 76 VRGINEG-AKFFSKEFILNYLMATYTKPQVSIL-NGIVMGGG-AGVSIHGRFRVA-------TENSVFAMPETALGLFPD 145 (375)
Q Consensus 76 ~~~~~~~-~~~~~~~~~l~~~i~~~~kPvIAav-nG~a~GgG-~~Lala~D~ria-------~~~a~f~~pe~~~G~~p~ 145 (375)
....... ........+++.+|..+||||||+| ||+|+||| ++|+++||+||| +++++|++||+++|++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~ 419 (546)
T TIGR03222 340 AHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPM 419 (546)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCC
Confidence 2111111 2222334457788999999999999 89999999 999999999999 899999999999999999
Q ss_pred ccHHHHHhhcc-h-HHH--HHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCC
Q 017189 146 IGASYFLSRLP-G-FFG--EYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYL 221 (375)
Q Consensus 146 ~g~~~~l~rl~-g-~~a--~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
+|++++|+|++ | .++ +++++||+.|+|+||+++|||++++|++++.+ ++.
T Consensus 420 ~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~--~a~------------------------ 473 (546)
T TIGR03222 420 VNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWED--EIR------------------------ 473 (546)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHH--HHH------------------------
Confidence 99999999998 8 567 56999999999999999999999999988743 222
Q ss_pred CcchhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHH-HHHHHH
Q 017189 222 KDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQC-LIREYR 300 (375)
Q Consensus 222 ~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~-l~~e~~ 300 (375)
+++++|++.||.+++.+|++++.....+++++ +..|..
T Consensus 474 -----------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~ 512 (546)
T TIGR03222 474 -----------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTA 512 (546)
T ss_pred -----------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHH
Confidence 23789999999999999999999999999999 999999
Q ss_pred HHHHHhhCCCcchHHh---hHhhhhccCCCCCCCCCCC
Q 017189 301 MVCHVMMGEVSKDFFE---GCRAILLDKDKNPKWKPSK 335 (375)
Q Consensus 301 ~~~~~~~~~~s~d~~e---gv~A~l~ek~r~P~w~~~~ 335 (375)
.+..++.++ |.+| |++|| .|| |+|+|+-.+
T Consensus 513 ~~~~~~~~~---d~~e~~~g~~af-~ek-r~p~f~~~~ 545 (546)
T TIGR03222 513 WQNWIFNRP---NAVGENGALKVY-GSG-KKAQFDMER 545 (546)
T ss_pred HHHHHhcCC---cccchhhHHHHH-ccC-CCCCCCccC
Confidence 999999765 9999 99999 599 899998544
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.4e-48 Score=396.08 Aligned_cols=256 Identities=13% Similarity=0.082 Sum_probs=220.6
Q ss_pred CCcEE--EEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhc-CCCceEEEEeeCC-CCccccC
Q 017189 8 EDQVL--EEETSFVRILTLNRPRQL-------------NALSAQMISRLLELFQRYET-DSNVKLLILKGKG-RAFCAGG 70 (375)
Q Consensus 8 ~~~v~--~~~~~~v~~itlnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~vr~vVltg~g-~~F~aG~ 70 (375)
|.++. ++++++|++||||||++. |+||.+|+.+|.+++..++. |+++|+|||||+| ++||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 44444 455699999999999988 68999999999999999996 7999999999999 5999999
Q ss_pred CchhHhhccchh-hHHHHHHHHHHHHHHhCCCcEEEEEc-cccchhh-hhhhhcCCEEEEe-------CCeEEecccccc
Q 017189 71 DVAAVVRGINEG-AKFFSKEFILNYLMATYTKPQVSILN-GIVMGGG-AGVSIHGRFRVAT-------ENSVFAMPETAL 140 (375)
Q Consensus 71 Dl~~~~~~~~~~-~~~~~~~~~l~~~i~~~~kPvIAavn-G~a~GgG-~~Lala~D~ria~-------~~a~f~~pe~~~ 140 (375)
|++......... .........++.+|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+++
T Consensus 339 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~ 418 (550)
T PRK08184 339 DATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNF 418 (550)
T ss_pred ChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccc
Confidence 987432111101 22233445577889999999999997 9999999 9999999999999 999999999999
Q ss_pred CCCCCccHHHHHhhc-ch-HHHHHH--hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhc
Q 017189 141 GLFPDIGASYFLSRL-PG-FFGEYV--GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFS 216 (375)
Q Consensus 141 G~~p~~g~~~~l~rl-~g-~~a~~l--~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (375)
|++|++|++++|+|+ +| .+++++ ++||++++|+||+++||||++||++++.+ ++.
T Consensus 419 Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~--~a~------------------- 477 (550)
T PRK08184 419 GLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWED--EVR------------------- 477 (550)
T ss_pred cCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHH--HHH-------------------
Confidence 999999999999988 69 668776 59999999999999999999999988743 222
Q ss_pred cCCCCCcchhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHH-H
Q 017189 217 LEPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQC-L 295 (375)
Q Consensus 217 ~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~-l 295 (375)
+++++|++.||.+++.+|++++.....+++++ +
T Consensus 478 ----------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~ 511 (550)
T PRK08184 478 ----------------------------------------------IALEERASLSPDALTGMEANLRFAGPETMETRIF 511 (550)
T ss_pred ----------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 23799999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhCCCcchHHh---hHhhhhccCCCCCCCCCCC
Q 017189 296 IREYRMVCHVMMGEVSKDFFE---GCRAILLDKDKNPKWKPSK 335 (375)
Q Consensus 296 ~~e~~~~~~~~~~~~s~d~~e---gv~A~l~ek~r~P~w~~~~ 335 (375)
..|...+..++.++ |.+| |++|| .|| |+|+|++.+
T Consensus 512 ~~e~~~~~~~~~~~---d~~e~~~g~~af-~ek-r~~~f~~~~ 549 (550)
T PRK08184 512 GRLTAWQNWIFQRP---NAVGEKGALKVY-GTG-QKAQFDWNR 549 (550)
T ss_pred HHHHHHHHHHhcCC---cccccchHHHHh-ccC-CCCCCCCCC
Confidence 99999999999765 9999 99999 599 899998765
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=6.6e-47 Score=347.37 Aligned_cols=212 Identities=22% Similarity=0.259 Sum_probs=186.8
Q ss_pred CCcEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh
Q 017189 8 EDQVLEEET-----SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG 82 (375)
Q Consensus 8 ~~~v~~~~~-----~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 82 (375)
++.|.++.. ++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh
Confidence 345666555 8999999999985 9999999999999999999999999999999999999999999875432221
Q ss_pred -hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHH
Q 017189 83 -AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFG 160 (375)
Q Consensus 83 -~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a 160 (375)
..+...+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++| ..+
T Consensus 81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 160 (222)
T PRK05869 81 ADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 223344567888999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred HHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 161 EYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 161 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
+++++||++++|+||+++||||+++|++++.. ++.
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------- 195 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAPDDVYD--AAA------------------------------------------- 195 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCchHHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999887633 222
Q ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 017189 241 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGR 287 (375)
Q Consensus 241 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~ 287 (375)
+.+++|+..+|.+++.+|++++...
T Consensus 196 ----------------------~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 196 ----------------------AWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred ----------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3378999999999999999998754
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-46 Score=357.18 Aligned_cols=231 Identities=22% Similarity=0.322 Sum_probs=200.3
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc------
Q 017189 7 QEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN------ 80 (375)
Q Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~------ 80 (375)
+++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 81 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD 81 (288)
T ss_pred CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence 46679999999999999999999999999999999999999999999999999999999999999998632110
Q ss_pred ------------h--hhH---HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCC
Q 017189 81 ------------E--GAK---FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLF 143 (375)
Q Consensus 81 ------------~--~~~---~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~ 143 (375)
. ... ....+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl- 160 (288)
T PRK08290 82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI- 160 (288)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-
Confidence 0 001 1223456677889999999999999999999999999999999999999999999998
Q ss_pred CCccHHHHHhhcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCC
Q 017189 144 PDIGASYFLSRLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLK 222 (375)
Q Consensus 144 p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
|+ ++++++++++| ..+++|++||+.++|+||+++||||++||++++.....
T Consensus 161 ~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~--------------------------- 212 (288)
T PRK08290 161 PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL--------------------------- 212 (288)
T ss_pred Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH---------------------------
Confidence 54 45677899999 57999999999999999999999999999877643222
Q ss_pred cchhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcC-CHHHHHHHHHHH
Q 017189 223 DHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQ-GVGQCLIREYRM 301 (375)
Q Consensus 223 ~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~-~l~~~l~~e~~~ 301 (375)
+.+++|++.||.+++.+|+++++.... .++++++.|...
T Consensus 213 ----------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T PRK08290 213 ----------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDL 252 (288)
T ss_pred ----------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 337899999999999999999987664 799999999999
Q ss_pred HHHHh
Q 017189 302 VCHVM 306 (375)
Q Consensus 302 ~~~~~ 306 (375)
....+
T Consensus 253 ~~~~~ 257 (288)
T PRK08290 253 HQLGH 257 (288)
T ss_pred HHHcc
Confidence 88877
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-45 Score=387.94 Aligned_cols=283 Identities=20% Similarity=0.239 Sum_probs=218.5
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhcc--ch--hhH
Q 017189 10 QVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI--NE--GAK 84 (375)
Q Consensus 10 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~--~~~ 84 (375)
.+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||+|++||+|+|++++.... .. ...
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ 86 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence 577874 7999999999999999999999999999999999999999999999999999999999875421 11 124
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+.....+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~l 166 (715)
T PRK11730 87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEW 166 (715)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHH
Confidence 4455667888899999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHh-cCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYK-VNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
++||++++|+||+++||||++||++++.....++.+ +... + ..+.... .+....... +.+++++.....
T Consensus 167 lltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~------~~~~~~~-~~~~~p~a~--~~~~~~~~~~~~ 236 (715)
T PRK11730 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAG-K------LDWKARR-QPKLEPLKL--SKIEAMMSFTTA 236 (715)
T ss_pred HHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhc-C------Ccccccc-Ccccccccc--cchhHHHHHHHH
Confidence 999999999999999999999999887443333321 1000 0 0000000 000000000 001111111111
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
+. .+.++..+..|.++ .++++++.....+++++++.|.+.+..++.++ |++||+++|+
T Consensus 237 k~------------------~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~---d~~egi~aF~ 294 (715)
T PRK11730 237 KG------------------MVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAKTN---VARALVGIFL 294 (715)
T ss_pred HH------------------HHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHH
Confidence 11 11245566777776 66778998888899999999999999999754 9999999996
Q ss_pred ccC
Q 017189 323 LDK 325 (375)
Q Consensus 323 ~ek 325 (375)
++
T Consensus 295 -~~ 296 (715)
T PRK11730 295 -ND 296 (715)
T ss_pred -HH
Confidence 65
No 75
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-46 Score=326.00 Aligned_cols=255 Identities=24% Similarity=0.392 Sum_probs=229.2
Q ss_pred cEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-h
Q 017189 10 QVLEEE----TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-A 83 (375)
Q Consensus 10 ~v~~~~----~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~ 83 (375)
.|.+++ +.||.+|-+|||.+.|+|+.-|+++|.++++.+..|+.+|+|+|++.- +.||+|+||++-....... .
T Consensus 28 Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~ 107 (291)
T KOG1679|consen 28 EVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVT 107 (291)
T ss_pred eeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHH
Confidence 455544 569999999999999999999999999999999999999999999876 9999999999986655544 6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHH
Q 017189 84 KFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEY 162 (375)
Q Consensus 84 ~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~ 162 (375)
.|...+..++..|.++|.||||+|+|.|+|||++|+|+||+|+|+++++|+++|++++++|+.|++++|+|++| ..+++
T Consensus 108 ~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKE 187 (291)
T KOG1679|consen 108 RFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKE 187 (291)
T ss_pred HHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999 67999
Q ss_pred HhhcCCccCHHHHHHcCccceecCCccH-HH-HHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcC
Q 017189 163 VGLTGARLDGAEMRACGLATHFVPSSRL-AL-LEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRR 240 (375)
Q Consensus 163 l~ltG~~i~A~eA~~~GLv~~vv~~~~l-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 240 (375)
|++||+.+++.||..+||||++|...+- +. ..+++
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal------------------------------------------- 224 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKAL------------------------------------------- 224 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHH-------------------------------------------
Confidence 9999999999999999999999987542 11 11122
Q ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhh
Q 017189 241 TVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRA 320 (375)
Q Consensus 241 ~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A 320 (375)
+++++|.-+-|.++++.|..++.+....+..++..|..-+.+.+.+ +|..||+.|
T Consensus 225 ----------------------~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t---~drLeglaa 279 (291)
T KOG1679|consen 225 ----------------------ELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPT---KDRLEGLAA 279 (291)
T ss_pred ----------------------HHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcH---HHHHHHHHH
Confidence 4589999999999999999999999999999999999988888865 499999999
Q ss_pred hhccCCCCCCCCCC
Q 017189 321 ILLDKDKNPKWKPS 334 (375)
Q Consensus 321 ~l~ek~r~P~w~~~ 334 (375)
| .|| |.|.|+++
T Consensus 280 f-~ek-r~p~y~G~ 291 (291)
T KOG1679|consen 280 F-KEK-RKPEYKGE 291 (291)
T ss_pred H-Hhh-cCCCcCCC
Confidence 9 699 89999863
No 76
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-45 Score=350.54 Aligned_cols=214 Identities=23% Similarity=0.326 Sum_probs=185.2
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccch---
Q 017189 5 QSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINE--- 81 (375)
Q Consensus 5 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--- 81 (375)
..+++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++......
T Consensus 6 ~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 6 LDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred cCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999987542210
Q ss_pred -------------------h----hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc
Q 017189 82 -------------------G----AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET 138 (375)
Q Consensus 82 -------------------~----~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~ 138 (375)
. ..+.....+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 01234455677889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHhhcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhcc
Q 017189 139 ALGLFPDIGASYFLSRLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSL 217 (375)
Q Consensus 139 ~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (375)
++|.+|+. ..+++++| .++++|++||++|+|+||+++||||++||++++.....
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~---------------------- 220 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTE---------------------- 220 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHH----------------------
Confidence 98666643 35677889 67999999999999999999999999999887643222
Q ss_pred CCCCCcchhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 017189 218 EPYLKDHSAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRL 288 (375)
Q Consensus 218 ~~~~~~~~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~ 288 (375)
+.+++|++.||.+++.+|++++....
T Consensus 221 ---------------------------------------------~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 221 ---------------------------------------------RLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred ---------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23789999999999999999988754
No 77
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-44 Score=342.81 Aligned_cols=242 Identities=18% Similarity=0.227 Sum_probs=200.8
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhc-----CCCceEEEEeeC-CCCccccCCchhHhhcc--ch
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYET-----DSNVKLLILKGK-GRAFCAGGDVAAVVRGI--NE 81 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~-----d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~--~~ 81 (375)
.|.++.+++|++|||| |++.|+||.+|+.+|.+++++++. |+++|+|||||. |+.||+|.|++++.... .+
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 3566678999999996 999999999999999999999998 899999999999 69999999999875321 11
Q ss_pred hh---HHHHHHHHHHHHHH---hCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhc
Q 017189 82 GA---KFFSKEFILNYLMA---TYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRL 155 (375)
Q Consensus 82 ~~---~~~~~~~~l~~~i~---~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl 155 (375)
.. .+...+...+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 11 12222233334343 7999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHH
Q 017189 156 PG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVID 234 (375)
Q Consensus 156 ~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 234 (375)
+| .++++|++||+.++|+||+++||||++||++++.+ ++.
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~--~a~------------------------------------- 217 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEA--AVR------------------------------------- 217 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHH--HHH-------------------------------------
Confidence 99 67999999999999999999999999999887633 222
Q ss_pred HHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchH
Q 017189 235 KCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDF 314 (375)
Q Consensus 235 ~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~ 314 (375)
+.+++|++. |.+...+|+..+.....++.+.++.|......+++.. +.-
T Consensus 218 ----------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 266 (287)
T PRK08788 218 ----------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLE--EKD 266 (287)
T ss_pred ----------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcc--ccc
Confidence 226788877 8888888888777767789999999887777766643 566
Q ss_pred HhhHhhhh
Q 017189 315 FEGCRAIL 322 (375)
Q Consensus 315 ~egv~A~l 322 (375)
.+-+.+|.
T Consensus 267 ~~~~~~~~ 274 (287)
T PRK08788 267 LRTMERLV 274 (287)
T ss_pred HHHHHHHH
Confidence 77788873
No 78
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-45 Score=337.90 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=196.0
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHH
Q 017189 9 DQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSK 88 (375)
Q Consensus 9 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (375)
+.|.++.+++|++||||||+ .|++|.+|+.+|.++++.++ +++++|||||.|++||+|.|++++.........+...
T Consensus 3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 79 (229)
T PRK06213 3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTA 79 (229)
T ss_pred ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHH
Confidence 35889999999999999985 69999999999999999988 4579999999999999999999876432111345556
Q ss_pred HHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC-eEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 89 EFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 89 ~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
..+++.++..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|+.+++++.+| ..++++++|
T Consensus 80 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~ 159 (229)
T PRK06213 80 GSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVIN 159 (229)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHc
Confidence 677888999999999999999999999999999999999999 999999999999988888888888888 568999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|++++|+||+++||||+++|++++.. .+.
T Consensus 160 g~~~~a~eA~~~Glv~~vv~~~~l~~--~a~------------------------------------------------- 188 (229)
T PRK06213 160 AEMFDPEEAVAAGFLDEVVPPEQLLA--RAQ------------------------------------------------- 188 (229)
T ss_pred CcccCHHHHHHCCCceeccChHHHHH--HHH-------------------------------------------------
Confidence 99999999999999999999877633 222
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMV 302 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~ 302 (375)
+.++++++.||.+++.+|++++......+.++++.|.+.+
T Consensus 189 ----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 189 ----------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred ----------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3378999999999999999999887778888888887653
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.8e-44 Score=342.04 Aligned_cols=269 Identities=19% Similarity=0.294 Sum_probs=208.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccc----hhhHHHHHHHHHH
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGIN----EGAKFFSKEFILN 93 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~----~~~~~~~~~~~l~ 93 (375)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ....+...+.+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 355999999999999999999999999999999999999999999 79999999998764211 1123444456778
Q ss_pred HHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhcCCccCH
Q 017189 94 YLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLTGARLDG 172 (375)
Q Consensus 94 ~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A 172 (375)
..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| .+++++++||++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 8899999999999999999999999999999999999999999999999999999999999999 679999999999999
Q ss_pred HHHHHcCccceecCCccH------------HHHHHHHHhcCCCCh---HHHHHHHHHhccCCCCCcchhhhHHHHHHHH-
Q 017189 173 AEMRACGLATHFVPSSRL------------ALLEEALYKVNSSDP---AVISAVIDKFSLEPYLKDHSAYHWMDVIDKC- 236 (375)
Q Consensus 173 ~eA~~~GLv~~vv~~~~l------------~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 236 (375)
++|+++|||+++||+.++ +...+.+.++..+.+ ++++.... .+.++
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~------------------~~~~~~ 259 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKE------------------LIKQGT 259 (360)
T ss_pred HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHH------------------HHhccc
Confidence 999999999999998776 222222222111111 11111111 11100
Q ss_pred hCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHh
Q 017189 237 FSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFE 316 (375)
Q Consensus 237 f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e 316 (375)
-...-+ ++-..+++.++....|.++.-+++-+|..........-..-...+..-+. -+..+
T Consensus 260 ~~~~~l---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 320 (360)
T TIGR03200 260 IDLSLL---------------DEAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM----NEART 320 (360)
T ss_pred chHhHH---------------HHHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc----cccch
Confidence 000001 11222356788999999999999999988777776666666666655543 38999
Q ss_pred hHhhhhccC
Q 017189 317 GCRAILLDK 325 (375)
Q Consensus 317 gv~A~l~ek 325 (375)
|++|| .++
T Consensus 321 ~~~~~-~~~ 328 (360)
T TIGR03200 321 GFRAF-NEG 328 (360)
T ss_pred hhHHH-hcc
Confidence 99999 675
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7e-44 Score=376.34 Aligned_cols=279 Identities=19% Similarity=0.262 Sum_probs=214.9
Q ss_pred cEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh--hH
Q 017189 10 QVLEEE-TSFVRILTLNRP-RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG--AK 84 (375)
Q Consensus 10 ~v~~~~-~~~v~~itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~~ 84 (375)
.+.+++ +++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+|.+ ++||+|+|++++....... ..
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 466777 789999999999 689999999999999999999999999999999976 8999999999875432111 23
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC--eEEeccccccCCCCCccHHHHHhhcch-HHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLPG-FFGE 161 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~ 161 (375)
+......++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++| .+++
T Consensus 86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~ 165 (708)
T PRK11154 86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 165 (708)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHH
Confidence 4445566888999999999999999999999999999999999996 599999999999999999999999999 6799
Q ss_pred HHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCC
Q 017189 162 YVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRT 241 (375)
Q Consensus 162 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 241 (375)
+|++||++++|+||+++||||++|+++++.+...++.+.. ... .. ...... +.-+...
T Consensus 166 ~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~-------------~~~--~~-~~~~~~------~~~~~~p 223 (708)
T PRK11154 166 DMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKG-------------KPA--RR-PLPVRE------RLLEGNP 223 (708)
T ss_pred HHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhc-------------CCc--cC-cCCchh------hhcccCc
Confidence 9999999999999999999999999988744333332110 000 00 000000 0000000
Q ss_pred H--HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHh
Q 017189 242 V--EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCR 319 (375)
Q Consensus 242 ~--~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~ 319 (375)
. ..+++ .+.+.+++-.+..-.++..+|++++.+...++.+++..|.+.+..++.++ |+++|++
T Consensus 224 ~~~~~~~~------------~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~---~~~~~~~ 288 (708)
T PRK11154 224 LGRALLFK------------QARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTP---ESAALRS 288 (708)
T ss_pred hhHHHHHH------------HHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHH
Confidence 0 00110 11111122222222589999999999988899999999999999999755 9999999
Q ss_pred hhhccC
Q 017189 320 AILLDK 325 (375)
Q Consensus 320 A~l~ek 325 (375)
+|+.++
T Consensus 289 aF~~~~ 294 (708)
T PRK11154 289 IFFATT 294 (708)
T ss_pred HHHHHH
Confidence 998665
No 81
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8.3e-45 Score=319.72 Aligned_cols=255 Identities=22% Similarity=0.362 Sum_probs=220.3
Q ss_pred CCcEEEE---EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccc---h
Q 017189 8 EDQVLEE---ETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGIN---E 81 (375)
Q Consensus 8 ~~~v~~~---~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 81 (375)
++.+.+. .+..|..+.||||.|.|+||..|+.|+.++++.+.+||++|+|||+|+|++||+|+|+..+..... +
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 4444444 356899999999999999999999999999999999999999999999999999999877654311 1
Q ss_pred h----------hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHH
Q 017189 82 G----------AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYF 151 (375)
Q Consensus 82 ~----------~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~ 151 (375)
+ +.+...+++.+..|.+||||||++|+|+|+|||+.|..+||+|+|+++|.|+.-|+.+|+..+.|...+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~R 177 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNR 177 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhh
Confidence 1 445556778888999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcch-H-HHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhH
Q 017189 152 LSRLPG-F-FGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHW 229 (375)
Q Consensus 152 l~rl~g-~-~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
||..+| . .++++.+|++.++|.||++.|||.+|+|+.+-. +..++
T Consensus 178 lpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l-------------------------------- 224 (292)
T KOG1681|consen 178 LPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL-------------------------------- 224 (292)
T ss_pred hhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH--------------------------------
Confidence 999999 4 599999999999999999999999999984321 22333
Q ss_pred HHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCC
Q 017189 230 MDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGE 309 (375)
Q Consensus 230 ~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~ 309 (375)
.+|+.|+.+||.++..||+.+....+.+.++.|.+-..+....+.
T Consensus 225 ---------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~-- 269 (292)
T KOG1681|consen 225 ---------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLL-- 269 (292)
T ss_pred ---------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHH--
Confidence 458999999999999999999999999999999999888887775
Q ss_pred CcchHHhhHhhhhccCCCCCCCC
Q 017189 310 VSKDFFEGCRAILLDKDKNPKWK 332 (375)
Q Consensus 310 ~s~d~~egv~A~l~ek~r~P~w~ 332 (375)
|+|+.+.+.|-+ +|.+.+.|.
T Consensus 270 -s~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 270 -SDDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred -HHHHHHHHHHHh-hcCCCCCcc
Confidence 459999999995 673333364
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.7e-43 Score=371.12 Aligned_cols=275 Identities=22% Similarity=0.307 Sum_probs=212.5
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE-eeCCCCccccCCchhHhhccch-h-hHHHHHH
Q 017189 14 EETSFVRILTLNRP-RQLNALSAQMISRLLELFQRYETDSNVKLLIL-KGKGRAFCAGGDVAAVVRGINE-G-AKFFSKE 89 (375)
Q Consensus 14 ~~~~~v~~itlnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~-~-~~~~~~~ 89 (375)
..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+||| +|.|++||+|+|++++...... . ..+....
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 85 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQG 85 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHH
Confidence 45789999999999 68999999999999999999999999999997 6788999999999987542211 1 2334455
Q ss_pred HHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC--eEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 90 FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 90 ~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
..++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++| ..+++|++|
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lllt 165 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILT 165 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHc
Confidence 67888999999999999999999999999999999999986 799999999999999999999999999 679999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCc--CCHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSR--RTVEE 244 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~--~~~~e 244 (375)
|+.++|++|+++||||++||++++.....++.+.. .+ .....+... +.-+. .....
T Consensus 166 G~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~--------------~~~~~~~~~------~~~~~~~~a~~~ 223 (699)
T TIGR02440 166 GKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KP--------------IRKPLSLQE------RLLEGTPLGRAL 223 (699)
T ss_pred CCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CC--------------CCCCccchh------hhcccCchhHHH
Confidence 99999999999999999999988754433332110 00 000000000 00000 00000
Q ss_pred HHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhcc
Q 017189 245 ILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLD 324 (375)
Q Consensus 245 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~e 324 (375)
++ +++.+.+++-....-.+...+|++++.+...+++++++.|.+.+..++.++ |+++++++|+.+
T Consensus 224 ~~------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~---~~~~~~~~f~~~ 288 (699)
T TIGR02440 224 LF------------DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTP---ESAALRSIFFAT 288 (699)
T ss_pred HH------------HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH
Confidence 00 011111222223234578889999999999999999999999999999755 999999999876
Q ss_pred C
Q 017189 325 K 325 (375)
Q Consensus 325 k 325 (375)
+
T Consensus 289 ~ 289 (699)
T TIGR02440 289 T 289 (699)
T ss_pred H
Confidence 5
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.8e-42 Score=363.60 Aligned_cols=284 Identities=18% Similarity=0.228 Sum_probs=217.5
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhcc--c-hh-hH
Q 017189 10 QVLEEE-TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGI--N-EG-AK 84 (375)
Q Consensus 10 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~-~~-~~ 84 (375)
.+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... . .. ..
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 677775 7899999999999999999999999999999999999999999999999999999999985421 1 11 23
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHH
Q 017189 85 FFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYV 163 (375)
Q Consensus 85 ~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l 163 (375)
+.....+++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l 166 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW 166 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 4445567888999999999999999999999999999999999999999999999999999999999999999 579999
Q ss_pred hhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhc-CCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKV-NSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTV 242 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 242 (375)
++||++++|++|+++||||+++|++++.....++.+. .... ..+.... ........ .+.+.+++..+..
T Consensus 167 lltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~-------~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~ 236 (714)
T TIGR02437 167 IASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGK-------LDWKAKR-QPKLEPLK--LSKIEAMMSFTTA 236 (714)
T ss_pred HHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcC-------CcccccC-CCCccccc--ccchHHHHHHHHH
Confidence 9999999999999999999999988875433333211 0000 0001000 00000000 0111222111111
Q ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhh
Q 017189 243 EEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAIL 322 (375)
Q Consensus 243 ~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l 322 (375)
. ....++..++.|...+.. ++++.+...++++++..|.+.+.+++.++ +.+..++.|+
T Consensus 237 ~------------------~~~~~~~~~~~pap~~~~-~~v~~~~~~~~~~gl~~E~~~f~~l~~s~---~a~~l~~~ff 294 (714)
T TIGR02437 237 K------------------GMVAQVAGPHYPAPMTAV-KTIEKAARFGRDKALEIEAKGFVKLAKTS---EAKALIGLFL 294 (714)
T ss_pred H------------------HHHHHhhcCCCCCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHh
Confidence 1 112334445555444444 67888878889999999999999999765 9999999998
Q ss_pred ccC
Q 017189 323 LDK 325 (375)
Q Consensus 323 ~ek 325 (375)
.++
T Consensus 295 ~~r 297 (714)
T TIGR02437 295 NDQ 297 (714)
T ss_pred hhH
Confidence 765
No 84
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.3e-41 Score=315.66 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=154.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCccccCCchhHhhccc--hh-hHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVK-LLILKGKGRAFCAGGDVAAVVRGIN--EG-AKFF 86 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~-~~~~ 86 (375)
+.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... .. ..+.
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 5678899999999999985 9999999999999999999999875 7778999999999999998753211 11 2234
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEe-CCeEEeccccccCCCCCccHHHHHhhcch-HHH-HHH
Q 017189 87 SKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVAT-ENSVFAMPETALGLFPDIGASYFLSRLPG-FFG-EYV 163 (375)
Q Consensus 87 ~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a-~~l 163 (375)
..+.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.++++++| .++ +++
T Consensus 81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~l 160 (239)
T PLN02267 81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDV 160 (239)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHH
Confidence 456678888999999999999999999999999999999998 56899999999999744445778999998 667 689
Q ss_pred hhcCCccCHHHHHHcCccceecCC-ccH
Q 017189 164 GLTGARLDGAEMRACGLATHFVPS-SRL 190 (375)
Q Consensus 164 ~ltG~~i~A~eA~~~GLv~~vv~~-~~l 190 (375)
++||++++|+||+++||||+++|+ +++
T Consensus 161 lltG~~~~a~eA~~~Glv~~vv~~~~~l 188 (239)
T PLN02267 161 LLRAAKLTAEEAVEMGIVDSAHDSAEET 188 (239)
T ss_pred HHcCCcCCHHHHHHCCCcceecCCHHHH
Confidence 999999999999999999999985 455
No 85
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-42 Score=303.84 Aligned_cols=251 Identities=24% Similarity=0.422 Sum_probs=206.8
Q ss_pred CCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeC--C-CCccccCCchhHhhcc---
Q 017189 7 QEDQVLEEET-SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGK--G-RAFCAGGDVAAVVRGI--- 79 (375)
Q Consensus 7 ~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~--g-~~F~aG~Dl~~~~~~~--- 79 (375)
.++.|.+++. ++|+.||||||+++|++.+.++.||.++|..++.|++|.+|||||. | ++||+|+|-+--....
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 4788999998 9999999999999999999999999999999999999999999985 5 8999999987543311
Q ss_pred chhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-H
Q 017189 80 NEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-F 158 (375)
Q Consensus 80 ~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~ 158 (375)
.+...-.-...++-+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|++...++|-+-++.++.+|.|++| .
T Consensus 96 ~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqK 175 (282)
T COG0447 96 DDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQK 175 (282)
T ss_pred CCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhh
Confidence 111111112345667789999999999999999999999999999999999999999999999988878889999999 4
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhC
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFS 238 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 238 (375)
.|+++.+.++.++|+||+++|+||.|||.++|+. +.+
T Consensus 176 kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~--e~v----------------------------------------- 212 (282)
T COG0447 176 KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK--ETV----------------------------------------- 212 (282)
T ss_pred hhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH--HHH-----------------------------------------
Confidence 6999999999999999999999999999988854 333
Q ss_pred cCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHhhCCCcchHHh
Q 017189 239 RRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVG--QCLIREYRMVCHVMMGEVSKDFFE 316 (375)
Q Consensus 239 ~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~--~~l~~e~~~~~~~~~~~~s~d~~e 316 (375)
.| ++.|.++||.+++..|.+++.-.+ ++. +.+.-+... ++. ++++.+|
T Consensus 213 --------------------~W----~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~---L~Y--mTdEa~E 262 (282)
T COG0447 213 --------------------QW----AREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATL---LYY--MTDEAQE 262 (282)
T ss_pred --------------------HH----HHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceE---EEE--echhhhh
Confidence 35 588999999999999999975433 221 111111111 121 4579999
Q ss_pred hHhhhhccCCCCCCCC
Q 017189 317 GCRAILLDKDKNPKWK 332 (375)
Q Consensus 317 gv~A~l~ek~r~P~w~ 332 (375)
|-.|| .|| |+|.|+
T Consensus 263 Gr~AF-~eK-R~Pdf~ 276 (282)
T COG0447 263 GRDAF-LEK-RKPDFS 276 (282)
T ss_pred hHHHH-hhc-cCCChH
Confidence 99999 599 899987
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.2e-40 Score=351.93 Aligned_cols=291 Identities=19% Similarity=0.272 Sum_probs=212.4
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEE-EEeeCCCCccccCCchhHhhccc-h-
Q 017189 6 SQEDQVLEEETSFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLL-ILKGKGRAFCAGGDVAAVVRGIN-E- 81 (375)
Q Consensus 6 ~~~~~v~~~~~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~v-Vltg~g~~F~aG~Dl~~~~~~~~-~- 81 (375)
+.++.+.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++|+| |+||.|++||+|+|++++..... .
T Consensus 10 ~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~ 89 (737)
T TIGR02441 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQE 89 (737)
T ss_pred CCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHH
Confidence 44667899999999999999998 68999999999999999999999999965 56999999999999999863211 1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC--eEEeccccccCCCCCccHHHHHhhcch-H
Q 017189 82 GAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETALGLFPDIGASYFLSRLPG-F 158 (375)
Q Consensus 82 ~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~rl~g-~ 158 (375)
...+.....+++.++.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|+|++| .
T Consensus 90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~ 169 (737)
T TIGR02441 90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP 169 (737)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHH
Confidence 1334455667888999999999999999999999999999999999987 589999999999999999999999999 6
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCC--cc-----------HHHHHHHHHh-cCCCChHHHHHHHHHhccCCCCCcc
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPS--SR-----------LALLEEALYK-VNSSDPAVISAVIDKFSLEPYLKDH 224 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~--~~-----------l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
.+++|++||++++|++|+++||||+|||+ ++ +.....++.+ +... +...+++.... +...
T Consensus 170 ~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~-----~~~~~~~~~~~-~~~~ 243 (737)
T TIGR02441 170 AALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG-----KLSINRDKGLV-HKIT 243 (737)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc-----cCCcccccccc-Cccc
Confidence 79999999999999999999999999986 21 2111111110 0000 00000000000 0000
Q ss_pred hhhhHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 017189 225 SAYHWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCH 304 (375)
Q Consensus 225 ~~~~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~ 304 (375)
.... +.-+ ....+++.. .+++.++...+.|...+ +.+++..+...++++++..|.+.|..
T Consensus 244 ~~~~-----~~~~---~~~~~~~~~-----------~~~~~~~~~g~~~Ap~~-~l~~v~~~~~~~~~~gl~~E~~~f~~ 303 (737)
T TIGR02441 244 QYVM-----TNPF---VRQQVYKTA-----------EDKVMKQTKGLYPAPLK-ILDVVRTGYDQGPDAGYEAESKAFGE 303 (737)
T ss_pred hhhc-----ccch---hHHHHHHHH-----------HHHHHHhccCCCccHHH-HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0000 0000 001111111 11222333333554444 44688888888999999999999999
Q ss_pred HhhCCCcchHHhhHhhhhccC
Q 017189 305 VMMGEVSKDFFEGCRAILLDK 325 (375)
Q Consensus 305 ~~~~~~s~d~~egv~A~l~ek 325 (375)
++.++ ..+.-++.|+.++
T Consensus 304 l~~s~---~a~al~~~f~~~~ 321 (737)
T TIGR02441 304 LSMTF---ESKALIGLFHGQT 321 (737)
T ss_pred HhCCH---HHHHHHHHHHHHH
Confidence 99765 8888899998775
No 87
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-41 Score=290.52 Aligned_cols=252 Identities=23% Similarity=0.344 Sum_probs=222.8
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh--hHHHH
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG--AKFFS 87 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--~~~~~ 87 (375)
..+++.+++|..|+||+|+|+|.|+..|+.+|.+.|....++.++|+|||+..|+.||+|.||+++....... ...+.
T Consensus 33 ~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq 112 (287)
T KOG1682|consen 33 LGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ 112 (287)
T ss_pred ccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence 3456677999999999999999999999999999999988889999999999999999999999997765322 55667
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
...+++.-|+++|+|||+.|||+|.++|+.|...||+++|+++++|..|..++|++...-+. -|.|.+. ..+.||++|
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~T 191 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMT 191 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHh
Confidence 77888999999999999999999999999999999999999999999999999997554443 4778887 569999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEIL 246 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei~ 246 (375)
|.+|++++|+..|||+++||.++++...+.
T Consensus 192 g~Pi~~eeAl~sGlvskvVp~~el~~e~~~-------------------------------------------------- 221 (287)
T KOG1682|consen 192 GLPITGEEALISGLVSKVVPAEELDKEIEE-------------------------------------------------- 221 (287)
T ss_pred CCCCchHHHHHhhhhhhcCCHHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999988542222
Q ss_pred HHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhhhccCC
Q 017189 247 SALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAILLDKD 326 (375)
Q Consensus 247 ~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~l~ek~ 326 (375)
+..+|...|...+.+.|+.+......+-.+++....+.++.-+.-+ |++|||.+| ++|
T Consensus 222 -----------------i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~---d~kegiasf-~~k- 279 (287)
T KOG1682|consen 222 -----------------ITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLG---DTKEGIASF-FEK- 279 (287)
T ss_pred -----------------HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccc---chHHHHHHH-hcc-
Confidence 2577888888889999999998888888999999999999988876 999999999 599
Q ss_pred CCCCCCCC
Q 017189 327 KNPKWKPS 334 (375)
Q Consensus 327 r~P~w~~~ 334 (375)
|.|+|+|.
T Consensus 280 rp~~~~h~ 287 (287)
T KOG1682|consen 280 RPPNWKHQ 287 (287)
T ss_pred CCCCcCCC
Confidence 89999873
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-40 Score=297.24 Aligned_cols=248 Identities=21% Similarity=0.315 Sum_probs=222.5
Q ss_pred CCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh--
Q 017189 6 SQEDQVLEEETSFVRILTLN-RPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG-- 82 (375)
Q Consensus 6 ~~~~~v~~~~~~~v~~itln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 82 (375)
+.+..+.+++++|+..|.+| ||++.|+++.+|+.++.++|..+.+|+++..+|++|.|+.||+|.|++.+.......
T Consensus 4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 45778999999999999999 999999999999999999999999999999999999999999999999886654322
Q ss_pred ------hHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcc
Q 017189 83 ------AKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLP 156 (375)
Q Consensus 83 ------~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~ 156 (375)
..+...+..+...+..+|||+||.|||+|+|.|..+.-.||+++|+|+++|..|++++|..|.+|+++.+|+++
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 11223333467788899999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccCCCCCcchhhhHHHHHHH
Q 017189 157 G-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLEPYLKDHSAYHWMDVIDK 235 (375)
Q Consensus 157 g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (375)
| ..|.+|++.|++++|+||.+.|||+++++.+.+.. ..+
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~--~v~-------------------------------------- 203 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNE--EVL-------------------------------------- 203 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHH--HHH--------------------------------------
Confidence 9 67999999999999999999999999999977743 333
Q ss_pred HhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHH
Q 017189 236 CFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFF 315 (375)
Q Consensus 236 ~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~ 315 (375)
+.++++++.||.+++..|+++|......+..+.+.|...+...|.++ |+.
T Consensus 204 ---------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~---e~~ 253 (266)
T KOG0016|consen 204 ---------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSA---ECL 253 (266)
T ss_pred ---------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCh---HHH
Confidence 22688999999999999999999999999999999999999999765 999
Q ss_pred hhHhhhhc
Q 017189 316 EGCRAILL 323 (375)
Q Consensus 316 egv~A~l~ 323 (375)
+.+.+|+.
T Consensus 254 ~~~~~~~~ 261 (266)
T KOG0016|consen 254 ARFKQYLS 261 (266)
T ss_pred HHHHHHhc
Confidence 99999963
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=6.7e-39 Score=288.32 Aligned_cols=182 Identities=34% Similarity=0.549 Sum_probs=169.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchh---hHHHH
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEG---AKFFS 87 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~~~~ 87 (375)
+.++++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++....... ..+..
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999987655432 46777
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-HHHHHHhhc
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-FFGEYVGLT 166 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~~a~~l~lt 166 (375)
.++.++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|++|++|+++++++++| ..+.+++++
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~ 160 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT 160 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999998 579999999
Q ss_pred CCccCHHHHHHcCccceecCCccHHH
Q 017189 167 GARLDGAEMRACGLATHFVPSSRLAL 192 (375)
Q Consensus 167 G~~i~A~eA~~~GLv~~vv~~~~l~~ 192 (375)
|+.++|+||.++|||+++++.+++..
T Consensus 161 g~~~~a~ea~~~Glv~~~~~~~~l~~ 186 (195)
T cd06558 161 GRRISAEEALELGLVDEVVPDEELLA 186 (195)
T ss_pred CCccCHHHHHHcCCCCeecChhHHHH
Confidence 99999999999999999999977744
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4.3e-38 Score=319.94 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=161.3
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEeeC-CCCccccCCch
Q 017189 6 SQEDQVLEEETSFVRILTLNRPR----------QLNALSAQMISRLLELFQRYE-TDSNVKLLILKGK-GRAFCAGGDVA 73 (375)
Q Consensus 6 ~~~~~v~~~~~~~v~~itlnrp~----------~~Nal~~~~~~eL~~~l~~~~-~d~~vr~vVltg~-g~~F~aG~Dl~ 73 (375)
..+++|.++++++|++||||||+ +.|+||.+|+.+|.++++.++ .|+++|+|||||. |++||+|.|++
T Consensus 8 ~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~ 87 (546)
T TIGR03222 8 SQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIF 87 (546)
T ss_pred CCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHH
Confidence 45778999999999999999976 899999999999999999999 7899999999997 49999999999
Q ss_pred hHhhccchh-h---HHHH-HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC--eEEeccccc-cCCCCC
Q 017189 74 AVVRGINEG-A---KFFS-KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETA-LGLFPD 145 (375)
Q Consensus 74 ~~~~~~~~~-~---~~~~-~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~-~G~~p~ 145 (375)
++....... . .+.. ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 88 MLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred HHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 875321111 1 1111 1123455677899999999999999999999999999999986 799999997 999999
Q ss_pred ccHHHHHh--hcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHH
Q 017189 146 IGASYFLS--RLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLAL 192 (375)
Q Consensus 146 ~g~~~~l~--rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 192 (375)
+|++.+++ +.+| .++++|++||+.++|+||+++||||++||++++.+
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~ 217 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDA 217 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHH
Confidence 99998887 6778 67999999999999999999999999999987744
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.4e-37 Score=314.34 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=160.7
Q ss_pred CCCCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-cCCCceEEEEeeCC-CCccccCCch
Q 017189 6 SQEDQVLEEETSFVRILTLNRP-------R---QLNALSAQMISRLLELFQRYE-TDSNVKLLILKGKG-RAFCAGGDVA 73 (375)
Q Consensus 6 ~~~~~v~~~~~~~v~~itlnrp-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~vr~vVltg~g-~~F~aG~Dl~ 73 (375)
+.++.+.++.+++|++|||||| + +.|+||.+|+.+|.++++.++ .|+++|+|||||.+ ++||+|+|++
T Consensus 12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~ 91 (550)
T PRK08184 12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF 91 (550)
T ss_pred CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence 4577899999999999999965 3 899999999999999999999 78999999999985 8999999999
Q ss_pred hHhhccchh-hHH---HHHH-HHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCC--eEEeccccc-cCCCCC
Q 017189 74 AVVRGINEG-AKF---FSKE-FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATEN--SVFAMPETA-LGLFPD 145 (375)
Q Consensus 74 ~~~~~~~~~-~~~---~~~~-~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~--a~f~~pe~~-~G~~p~ 145 (375)
.+....... ..+ .... ..+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~ 171 (550)
T PRK08184 92 MLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPG 171 (550)
T ss_pred hHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCC
Confidence 875422111 111 1111 22445678899999999999999999999999999999987 899999997 999999
Q ss_pred ccHHHHHh--hcch-HHHHHHhhcCCccCHHHHHHcCccceecCCccHHH
Q 017189 146 IGASYFLS--RLPG-FFGEYVGLTGARLDGAEMRACGLATHFVPSSRLAL 192 (375)
Q Consensus 146 ~g~~~~l~--rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 192 (375)
+|++++++ +++| ..+++|++||+.++|+||+++||||++||++++..
T Consensus 172 ~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~ 221 (550)
T PRK08184 172 TGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDA 221 (550)
T ss_pred cchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHH
Confidence 99999988 6788 57999999999999999999999999999887743
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.90 E-value=2.4e-23 Score=171.93 Aligned_cols=115 Identities=45% Similarity=0.867 Sum_probs=99.3
Q ss_pred hHHHHHHHHhCcCCHHHHHHHHhhcccccccHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 017189 228 HWMDVIDKCFSRRTVEEILSALESESTNRADAWISDAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMM 307 (375)
Q Consensus 228 ~~~~~i~~~f~~~~~~ei~~~L~~~~~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~ 307 (375)
.+...|++||+.+++++|+++|+.+ .++|+.++++.|.++||.|+++|.++++++...++.++++.|+++..+++.
T Consensus 4 ~~~~~I~~~F~~~s~~eI~~~L~~~----~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~ 79 (118)
T PF13766_consen 4 EHLEAIDRCFSADSVEEIIEALEAD----GDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR 79 (118)
T ss_dssp HCHHHHHHHTTSSSHHHHHHHHHHH----S-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcc----CcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999993 579999999999999999999999999999999999999999999999998
Q ss_pred CCCcchHHhhHhhhhccCCCCCCCCCCCccCCCHHHHHhccc
Q 017189 308 GEVSKDFFEGCRAILLDKDKNPKWKPSKLELVNDNMVDQYFS 349 (375)
Q Consensus 308 ~~~s~d~~egv~A~l~ek~r~P~w~~~~~~~v~~~~v~~~f~ 349 (375)
.+ ||.|||+|.|+||++.|+|+|+++++|++++|+++|+
T Consensus 80 ~~---DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 80 HP---DFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp CS---CHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred cc---hHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 76 9999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.80 E-value=2.7e-19 Score=158.81 Aligned_cols=140 Identities=16% Similarity=0.052 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhh
Q 017189 36 QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGG 115 (375)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG 115 (375)
-.+.+|.++++.+.+|+++++|||++ +|.|+|+... ..+.+++..+.+++|||||+|||.|.|+|
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~-----------~~~~~~i~~~~~~~kpVia~v~G~a~g~g 86 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS-----------EVIRAELAAARAAGKPVVASGGGNAASGG 86 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH-----------HHHHHHHHHHHhCCCCEEEEECCchhHHH
Confidence 35789999999999999999999997 6889887643 12344666778899999999999999999
Q ss_pred hhhhhcCCEEEEeCCeEEeccccccCCCCCccHHH--------HHhhcch--H-HHHHHhhcCCccCHHHHHHcCcccee
Q 017189 116 AGVSIHGRFRVATENSVFAMPETALGLFPDIGASY--------FLSRLPG--F-FGEYVGLTGARLDGAEMRACGLATHF 184 (375)
Q Consensus 116 ~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~--------~l~rl~g--~-~a~~l~ltG~~i~A~eA~~~GLv~~v 184 (375)
+.|+++||+++++++++|+.+.+..+..+...... .+++..| . ..++++..|..++|++|++.||||++
T Consensus 87 ~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v 166 (177)
T cd07014 87 YWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSL 166 (177)
T ss_pred HHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccC
Confidence 99999999999999999999988776433222222 3444444 2 36788899999999999999999999
Q ss_pred cCCccH
Q 017189 185 VPSSRL 190 (375)
Q Consensus 185 v~~~~l 190 (375)
.+.+++
T Consensus 167 ~~~~e~ 172 (177)
T cd07014 167 GSFDDA 172 (177)
T ss_pred CCHHHH
Confidence 987665
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.77 E-value=4.3e-18 Score=152.41 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=114.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe-eCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh
Q 017189 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILK-GKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT 98 (375)
Q Consensus 20 ~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 98 (375)
+.|.++. .++..+...+.++|+.++.|+ ++.|+|. . |-|+++..- ..++..|..
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~~--------------~~i~~~l~~ 56 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDST--------------REIVQAILA 56 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHHH--------------HHHHHHHHh
Confidence 4566653 366778889999999998765 7877776 3 334443221 234556778
Q ss_pred CCCcEEEEEc---cccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCc--------------cHHHHHhhcchH---
Q 017189 99 YTKPQVSILN---GIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDI--------------GASYFLSRLPGF--- 158 (375)
Q Consensus 99 ~~kPvIAavn---G~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~--------------g~~~~l~rl~g~--- 158 (375)
+|||||++|+ |+|.|||+.|+++||+++++++++|+++++..|..+.. +....+++..|.
T Consensus 57 ~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~ 136 (187)
T cd07020 57 SPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAE 136 (187)
T ss_pred CCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999999 99999999999999999999999999999985554432 245567787773
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCCc-cH
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPSS-RL 190 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~-~l 190 (375)
.+++++++|+.++|+||+++||||+++++. ++
T Consensus 137 ~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~ 169 (187)
T cd07020 137 WAEKAVRESLSLTAEEALKLGVIDLIAADLNEL 169 (187)
T ss_pred HHHHHHHcCCeecHHHHHHcCCcccccCCHHHH
Confidence 588999999999999999999999999885 44
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.65 E-value=7.7e-16 Score=140.43 Aligned_cols=157 Identities=17% Similarity=0.083 Sum_probs=110.1
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH
Q 017189 18 FVRILTLNRP--RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL 95 (375)
Q Consensus 18 ~v~~itlnrp--~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~ 95 (375)
+|++|.++.| ...+..+..++.+|.++|+.+..|+++++|||+ .||.|+|+..+. .+.+.+..
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~-----------~~~~~l~~ 65 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE-----------VIRAELAA 65 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH-----------HHHHHHHH
Confidence 3555555532 122333455789999999999999999999998 699999987652 22345567
Q ss_pred HHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccc------------cccCCCC---Cc-c------------
Q 017189 96 MATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPE------------TALGLFP---DI-G------------ 147 (375)
Q Consensus 96 i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe------------~~~G~~p---~~-g------------ 147 (375)
+..++|||||+++|.|.|+|+.|+++||+++|++.+.|+.-- -++|+-+ -. |
T Consensus 66 ~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~ 145 (211)
T cd07019 66 ARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPP 145 (211)
T ss_pred HHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCH
Confidence 788999999999999999999999999999999998886322 1233311 11 1
Q ss_pred -HHHHHhhcc---------------h--HHHHHHhhcCCccCHHHHHHcCccceecCCcc
Q 017189 148 -ASYFLSRLP---------------G--FFGEYVGLTGARLDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 148 -~~~~l~rl~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 189 (375)
.-..+.+.+ + .....-...|..+++++|++.||||++..-++
T Consensus 146 e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~ 205 (211)
T cd07019 146 EAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHH
Confidence 001111111 1 11222255788999999999999999987544
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.56 E-value=3.9e-14 Score=123.61 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++..++.+|.+.|+.++.|+++++|+|.. .|.|+|+... ..+...+..++||||+.++|.|.
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~--------------~~i~~~l~~~~kpvva~~~g~~~ 69 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG--------------MNIVDALQASRKPVIAYVGGQAA 69 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH--------------HHHHHHHHHhCCCEEEEECChhH
Confidence 56688999999999999999999999986 4777765432 23445667788999999999999
Q ss_pred hhhhhhhhcCCEEEEeCCeEEeccccccCCCCCcc--H----HHH----Hhhcc-------h--H-HHHHHhhcCCccCH
Q 017189 113 GGGAGVSIHGRFRVATENSVFAMPETALGLFPDIG--A----SYF----LSRLP-------G--F-FGEYVGLTGARLDG 172 (375)
Q Consensus 113 GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g--~----~~~----l~rl~-------g--~-~a~~l~ltG~~i~A 172 (375)
++|+.|+++||.|++.+++.|++..+..+.....+ . ... ..+.. | . ....++..|..++|
T Consensus 70 s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a 149 (161)
T cd00394 70 SAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTA 149 (161)
T ss_pred HHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcH
Confidence 99999999999999999999999888766543220 0 011 11111 1 1 24567778999999
Q ss_pred HHHHHcCcccee
Q 017189 173 AEMRACGLATHF 184 (375)
Q Consensus 173 ~eA~~~GLv~~v 184 (375)
+||+++||||++
T Consensus 150 ~eA~~~GLvD~i 161 (161)
T cd00394 150 QEALEYGLVDAL 161 (161)
T ss_pred HHHHHcCCcCcC
Confidence 999999999975
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.53 E-value=1.4e-13 Score=125.86 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=74.7
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcE
Q 017189 25 NRPRQLNA-LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQ 103 (375)
Q Consensus 25 nrp~~~Na-l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv 103 (375)
++|...|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++... ..+...+..+.. +|||
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~-----------~~l~~~l~~~~~-~KpV 76 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV-----------FELADAIRAARA-GKPI 76 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH-----------HHHHHHHHHHhc-CCCE
Confidence 45555564 45689999999999999999999999986 5666664332 122333333444 6999
Q ss_pred EEEEccccchhhhhhhhcCCEEEEeCCeEEecc
Q 017189 104 VSILNGIVMGGGAGVSIHGRFRVATENSVFAMP 136 (375)
Q Consensus 104 IAavnG~a~GgG~~Lala~D~ria~~~a~f~~p 136 (375)
||+++|.|.|+|+.|+++||+++|++.+.|+..
T Consensus 77 iA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 77 VAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred EEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 999999999999999999999999999987654
No 98
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.48 E-value=1.4e-13 Score=142.72 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=117.5
Q ss_pred EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC---CCccccCCchhHhhccchhhHHHHHH
Q 017189 15 ETSFVRILTLNRPR--QLNALSAQMISRLLELFQRYETDSNVKLLILKGKG---RAFCAGGDVAAVVRGINEGAKFFSKE 89 (375)
Q Consensus 15 ~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g---~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (375)
.+++|++|+++.+= ..|..+....+.+.+.|+.+..|++|++|||+-.. ..||+ ..+
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as------------------e~i 367 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS------------------EII 367 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH------------------HHH
Confidence 46889999999753 23434444567888899999999999999999542 33332 122
Q ss_pred HHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEE------eccc------cccCCCCCccHHHHHhh---
Q 017189 90 FILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVF------AMPE------TALGLFPDIGASYFLSR--- 154 (375)
Q Consensus 90 ~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f------~~pe------~~~G~~p~~g~~~~l~r--- 154 (375)
++.+.++...+||||+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|+.+.+..+.+
T Consensus 368 ~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~ 447 (584)
T TIGR00705 368 RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSL 447 (584)
T ss_pred HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCC
Confidence 33445566778999999999999999999999999999999876 5553 58999888776654443
Q ss_pred -------------------------cch-HH-----HHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 155 -------------------------LPG-FF-----GEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 155 -------------------------l~g-~~-----a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.++ .+ ..+.+.+|+.++|++|+++||||++..-
T Consensus 448 ~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 448 LRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH
Confidence 333 22 5677889999999999999999999543
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.48 E-value=2.8e-13 Score=123.26 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=108.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT 98 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 98 (375)
|++|.++.+=... ...++.+|.++|+.+..|+++++|||++ +|.|+|+... ..+.+.+..+..
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~-----------~~i~~~i~~~~~ 64 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS-----------EEIYREIRRLRK 64 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH-----------HHHHHHHHHHHh
Confidence 5566666431000 3678999999999999999999999998 5889887652 123445667788
Q ss_pred CCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc------------ccCCCCCcc------------------H
Q 017189 99 YTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGLFPDIG------------------A 148 (375)
Q Consensus 99 ~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~G~~p~~g------------------~ 148 (375)
++|||||+++|.|.|+|+.|+++||++++++.+.|+..-+ ++|+-+... .
T Consensus 65 ~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~ 144 (208)
T cd07023 65 AKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEE 144 (208)
T ss_pred cCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHH
Confidence 8999999999999999999999999999999998864322 234322211 0
Q ss_pred HHHHhhcc---------------h--HHHHHHhhcCCccCHHHHHHcCccceecCCcc
Q 017189 149 SYFLSRLP---------------G--FFGEYVGLTGARLDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 149 ~~~l~rl~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 189 (375)
...+..++ | .....-++.|..+++++|++.||||.+...++
T Consensus 145 ~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 145 RAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDD 202 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHH
Confidence 11111111 1 11112256888999999999999999986544
No 100
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.44 E-value=7e-13 Score=115.69 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhh
Q 017189 36 QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGG 115 (375)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG 115 (375)
.+...+.+.|..+..+.. -.+.|.+.|+ ++.. ...+...|..++||||+.++|.|.|+|
T Consensus 15 ~~~~~~~~~l~~~~~~~~-i~l~inspGG------~~~~--------------~~~i~~~i~~~~~pvi~~v~g~a~s~g 73 (160)
T cd07016 15 VTAKEFKDALDALGDDSD-ITVRINSPGG------DVFA--------------GLAIYNALKRHKGKVTVKIDGLAASAA 73 (160)
T ss_pred cCHHHHHHHHHhccCCCC-EEEEEECCCC------CHHH--------------HHHHHHHHHhcCCCEEEEEcchHHhHH
Confidence 567888888998887733 3444455443 2211 123566678889999999999999999
Q ss_pred hhhhhcCCEEEEeCCeEEeccccccCCCCCccH---------------HHHHhhcch--HH-HHHHhhcCCccCHHHHHH
Q 017189 116 AGVSIHGRFRVATENSVFAMPETALGLFPDIGA---------------SYFLSRLPG--FF-GEYVGLTGARLDGAEMRA 177 (375)
Q Consensus 116 ~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~l~rl~g--~~-a~~l~ltG~~i~A~eA~~ 177 (375)
+.|+++||+|+++++++|+++....|..+.... ...+.+..| .. ...++.++..++|+||++
T Consensus 74 ~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~ 153 (160)
T cd07016 74 SVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVE 153 (160)
T ss_pred HHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHH
Confidence 999999999999999999998877665443321 223566667 33 666777777899999999
Q ss_pred cCcccee
Q 017189 178 CGLATHF 184 (375)
Q Consensus 178 ~GLv~~v 184 (375)
+||||++
T Consensus 154 ~GliD~v 160 (160)
T cd07016 154 LGFADEI 160 (160)
T ss_pred cCCCCcC
Confidence 9999975
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.38 E-value=7.9e-12 Score=113.70 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT 98 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 98 (375)
|++|+++.+= + ....+|.++|+.+..|+++++|||++. |.|+++... ..+...|..
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~--------------~~l~~~i~~ 57 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS--------------EEIYEKLKK 57 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH--------------HHHHHHHHH
Confidence 5666666431 1 336789999999999999999999984 777776532 223445555
Q ss_pred CC--CcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc------------ccCCCCC---------cc--------
Q 017189 99 YT--KPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGLFPD---------IG-------- 147 (375)
Q Consensus 99 ~~--kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~G~~p~---------~g-------- 147 (375)
++ |||||.++|.|.|+|+.|+++||.++|++++.++.-.+ ++|+-+. .+
T Consensus 58 ~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~ 137 (207)
T TIGR00706 58 LKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTP 137 (207)
T ss_pred hcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCH
Confidence 55 99999999999999999999999999999988765333 2333210 00
Q ss_pred -HHHHHhhcc---------------h--HHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 148 -ASYFLSRLP---------------G--FFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 148 -~~~~l~rl~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
....+.+++ | .....=++.|..+++++|++.||||++...+++
T Consensus 138 ~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~ 198 (207)
T TIGR00706 138 EERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA 198 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence 001111111 1 111122468899999999999999999876664
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.24 E-value=4.4e-11 Score=109.95 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
-+..++.+|.++|+.+..|++|++|||+..+..| ++.++.++ .+.+..+...+|||||.++| |.
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el--------------~~~i~~~~~~~kpVia~~~~-~~ 89 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL--------------RQALERFRASGKPVIAYADG-YS 89 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH--------------HHHHHHHHHhCCeEEEEeCC-CC
Confidence 4567899999999999999999999999988666 65555544 33445566689999999998 88
Q ss_pred hhhhhhhhcCCEEEEeCCeEEeccccc------------cCCCCC---------ccHHHH-----------Hhhcc----
Q 017189 113 GGGAGVSIHGRFRVATENSVFAMPETA------------LGLFPD---------IGASYF-----------LSRLP---- 156 (375)
Q Consensus 113 GgG~~Lala~D~ria~~~a~f~~pe~~------------~G~~p~---------~g~~~~-----------l~rl~---- 156 (375)
+||+.|+++||.++|.+.+.|+..-+. +|+-+. .+..+. +..++
T Consensus 90 sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~ 169 (222)
T cd07018 90 QGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLW 169 (222)
T ss_pred chhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999885432 233221 111111 01111
Q ss_pred -------------hHHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 157 -------------GFFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 157 -------------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
......-+..|..+++++|++.||||++...+++
T Consensus 170 ~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~ 216 (222)
T cd07018 170 DQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL 216 (222)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence 1111122355999999999999999999976554
No 103
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.22 E-value=2.3e-10 Score=101.43 Aligned_cols=140 Identities=15% Similarity=0.215 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhC
Q 017189 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATY 99 (375)
Q Consensus 20 ~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 99 (375)
..|.++. .++..+...+.++|+.+.+++ +..|||.=. |.|+++. ....+...|..+
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~--------------~~~~I~~~l~~~ 57 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD--------------SALEIVDLILNS 57 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH--------------HHHHHHHHHHhC
Confidence 3455543 367788889999999999886 667766532 2333332 223456778889
Q ss_pred CCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccH--------HHH------Hhhcch-H--HHHH
Q 017189 100 TKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGA--------SYF------LSRLPG-F--FGEY 162 (375)
Q Consensus 100 ~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~--------~~~------l~rl~g-~--~a~~ 162 (375)
++|||+.|+|.|.++|+.++++||+++|++++.|+.+.+- +..|. +.. +...-| . .+..
T Consensus 58 ~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~ 133 (178)
T cd07021 58 PIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEA 133 (178)
T ss_pred CCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999988543 32222 111 112223 1 2455
Q ss_pred HhhcC-------------CccCHHHHHHcCccceecCC
Q 017189 163 VGLTG-------------ARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 163 l~ltG-------------~~i~A~eA~~~GLv~~vv~~ 187 (375)
|+--. -.++++||++.|++|.+.++
T Consensus 134 mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 134 MVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 55443 26999999999999999876
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.70 E-value=3.5e-07 Score=80.50 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEc---c
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILN---G 109 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavn---G 109 (375)
++..+...|.+.++.++++ .++.|+|.=. |-|+.+.. ...+...|...++||++.|+ |
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~--------------~~~I~~~i~~~~~pvv~~v~p~g~ 70 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA--------------AGNIVQRIQQSKIPVIIYVYPPGA 70 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH--------------HHHHHHHHHhcCcCEEEEEecCCC
Confidence 6777888999999998875 4677776532 33443322 12345556778999999999 9
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCC----cc----HHHHHh------hcch---HHHHHHhhcCCccCH
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPD----IG----ASYFLS------RLPG---FFGEYVGLTGARLDG 172 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~----~g----~~~~l~------rl~g---~~a~~l~ltG~~i~A 172 (375)
.|..+|.-++++||.++|.+++.++....-.|..+. .. .+..+. +.-| ..+..++-....+++
T Consensus 71 ~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta 150 (172)
T cd07015 71 SAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTP 150 (172)
T ss_pred eehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCH
Confidence 999999999999999999999999987774432120 00 111222 2223 236677778888999
Q ss_pred HHHHHcCccceecCC
Q 017189 173 AEMRACGLATHFVPS 187 (375)
Q Consensus 173 ~eA~~~GLv~~vv~~ 187 (375)
+||+++|++|.++.+
T Consensus 151 ~EA~~~G~iD~ia~~ 165 (172)
T cd07015 151 EEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHcCCceeeeCC
Confidence 999999999999987
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.58 E-value=7.4e-07 Score=77.91 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++..+..++.+.|..++.++..+.|+|.=. |.|+++. ....++..|..+++|+++.+.|.|.
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~--------------~~~~i~~~i~~~~~~v~~~~~g~aa 70 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF--------------AGMAIYDTIKFIKADVVTIIDGLAA 70 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH--------------HHHHHHHHHHhcCCCceEEEEeehh
Confidence 567899999999999998877776666532 3333322 1123455667788999999999999
Q ss_pred hhhhhhhhcCC--EEEEeCCeEEeccccccCCCCCccHHH---------------HHhhcch-H--HHHHHhhcCCccCH
Q 017189 113 GGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG-F--FGEYVGLTGARLDG 172 (375)
Q Consensus 113 GgG~~Lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~rl~g-~--~a~~l~ltG~~i~A 172 (375)
++|.-|+++|| .|++.++++|.+....-|......-.. .+.+..| . ....++-.+.-++|
T Consensus 71 S~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa 150 (162)
T cd07013 71 SMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSA 150 (162)
T ss_pred hHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccH
Confidence 99999999999 688888888876544322211100000 1111113 1 23445555556799
Q ss_pred HHHHHcCcccee
Q 017189 173 AEMRACGLATHF 184 (375)
Q Consensus 173 ~eA~~~GLv~~v 184 (375)
+||+++||||++
T Consensus 151 ~eA~~~GliD~i 162 (162)
T cd07013 151 REAVEYGFADTI 162 (162)
T ss_pred HHHHHcCCCCcC
Confidence 999999999975
No 106
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.56 E-value=2.2e-08 Score=95.84 Aligned_cols=167 Identities=17% Similarity=0.092 Sum_probs=137.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchh-hHHHHHHHHHHHH
Q 017189 18 FVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEG-AKFFSKEFILNYL 95 (375)
Q Consensus 18 ~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~l~~~ 95 (375)
+++.+.++ |+ .|..|.++..+|..-++.++.+..+++..+|+.. +.|++|.|..+........ ..++-++.+++.+
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~ 143 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA 143 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence 78888888 66 4999999999999999999999899999999998 9999999999887655432 5677788899999
Q ss_pred HHhCCCcEEEEEccccchhh--hhhhhcCCEEEEe--CCeEEeccccccCC-CCCccHHHHHhhcch-HHHHHHhhcCCc
Q 017189 96 MATYTKPQVSILNGIVMGGG--AGVSIHGRFRVAT--ENSVFAMPETALGL-FPDIGASYFLSRLPG-FFGEYVGLTGAR 169 (375)
Q Consensus 96 i~~~~kPvIAavnG~a~GgG--~~Lala~D~ria~--~~a~f~~pe~~~G~-~p~~g~~~~l~rl~g-~~a~~l~ltG~~ 169 (375)
.++++.|+.+++||++-.|| +.++.+|+|++.. ..-..+..+..+|+ +|++-.- .+-..+| +.+.+-+--|.-
T Consensus 144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD-~~~t~fGf~~g~~~L~d~~g 222 (380)
T KOG1683|consen 144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLID-SLITKFGFRVGERALADGVG 222 (380)
T ss_pred cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHH-HHHHhcCccccHHHHhhccC
Confidence 99999999999999999888 8899999999998 44555788888885 4444322 2223335 445555667888
Q ss_pred cCHHHHHHcCccceecCC
Q 017189 170 LDGAEMRACGLATHFVPS 187 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~ 187 (375)
++..||.+-|+++.+.+.
T Consensus 223 fdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 223 FDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccHHHHHhhccchhccch
Confidence 999999999999999985
No 107
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.53 E-value=1e-06 Score=79.63 Aligned_cols=138 Identities=18% Similarity=0.124 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017189 32 ALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIV 111 (375)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a 111 (375)
.++..+...+...|..++.++..+-|.|.=. |.|+|+.. ...++..|...+.|+++.+.|.|
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~--------------g~~I~d~i~~~~~~v~t~~~G~a 100 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA--------------GLAIYDTMQFIKPDVSTICIGQA 100 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH--------------HHHHHHHHHhcCCCEEEEEEeEe
Confidence 3788999999999998886543333333211 22333221 12244456677889999999999
Q ss_pred chhhhhhhhcCC--EEEEeCCeEEeccccccCCCCCccH----H-----------HHHhhcch---HHHHHHhhcCCccC
Q 017189 112 MGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGA----S-----------YFLSRLPG---FFGEYVGLTGARLD 171 (375)
Q Consensus 112 ~GgG~~Lala~D--~ria~~~a~f~~pe~~~G~~p~~g~----~-----------~~l~rl~g---~~a~~l~ltG~~i~ 171 (375)
.+.|..|+++++ .|++.++++|.+....-|......- . ..+....| .....++-.+.-++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls 180 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS 180 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc
Confidence 999999988753 5777777766655443221100000 0 11222223 12445556677899
Q ss_pred HHHHHHcCccceecCC
Q 017189 172 GAEMRACGLATHFVPS 187 (375)
Q Consensus 172 A~eA~~~GLv~~vv~~ 187 (375)
|+||+++||||+|+.+
T Consensus 181 a~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 181 AEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHcCCccEEeec
Confidence 9999999999999975
No 108
>PRK10949 protease 4; Provisional
Probab=98.50 E-value=2.5e-06 Score=89.20 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=102.0
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHH
Q 017189 16 TSFVRILTLNRP-----RQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEF 90 (375)
Q Consensus 16 ~~~v~~itlnrp-----~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (375)
.+.|++|+++.+ ...+.++. +.+.+.|+.+..|++|++|||+-.. .|+... ..+.++
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInS----pGGs~~-----------ase~i~ 386 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNS----PGGSVT-----------ASEVIR 386 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecC----CCCcHH-----------HHHHHH
Confidence 567888888732 22234443 5677888899999999999998653 222211 112334
Q ss_pred HHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc------------ccCCCCCccHH---------
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGLFPDIGAS--------- 149 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~G~~p~~g~~--------- 149 (375)
+.+.++....||||+.+.|.|.-||.-++++||.++|.+.+..+.--+ ++|+-+++..+
T Consensus 387 ~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~ 466 (618)
T PRK10949 387 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSIT 466 (618)
T ss_pred HHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCcccc
Confidence 445555667899999999999999999999999999998664333211 34443221111
Q ss_pred --------HHHhhcc-----------------hHHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 150 --------YFLSRLP-----------------GFFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 150 --------~~l~rl~-----------------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
..+...+ ......-+..|+.+++++|++.||||++-.-++.
T Consensus 467 ~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~a 532 (618)
T PRK10949 467 KALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDA 532 (618)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHH
Confidence 0111111 1111222568999999999999999999765443
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.43 E-value=4.5e-06 Score=75.87 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017189 32 ALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIV 111 (375)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a 111 (375)
.++..+..++.+.|..++..+..+.|+|.=. |.|+++.. ...++..|..++.|+++.+.|.|
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~--------------g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA--------------GDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH--------------HHHHHHHHHhcCCCcEEEEEeeh
Confidence 3789999999999999987543343333211 23333321 12345566778889999999999
Q ss_pred chhhhhhhhcCC--EEEEeCCeEEecccccc-CCCCCccHH------------------HHHhhcch-H--HHHHHhhcC
Q 017189 112 MGGGAGVSIHGR--FRVATENSVFAMPETAL-GLFPDIGAS------------------YFLSRLPG-F--FGEYVGLTG 167 (375)
Q Consensus 112 ~GgG~~Lala~D--~ria~~~a~f~~pe~~~-G~~p~~g~~------------------~~l~rl~g-~--~a~~l~ltG 167 (375)
.+.|.-|+++|| .|++.++++|.+..... |.. .|-. ..+...-| . ....++-.+
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 182 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRD 182 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 999999999999 59999999999877643 211 1111 11222234 1 245566678
Q ss_pred CccCHHHHHHcCccceecCC
Q 017189 168 ARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~ 187 (375)
.-++|+||+++||||+++++
T Consensus 183 ~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 183 KWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred ccccHHHHHHcCCccEEcCc
Confidence 88999999999999999976
No 110
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.35 E-value=8.1e-05 Score=69.63 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
..+++++-.....+.++.+++.. +-+|-|.-.++++. |.+-.. ....+.+.+++..+....+|+|+.|-|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE~--------~G~~~~ia~~~~~~s~~~VP~IsVI~G 145 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAEE--------RGQGEAIARNLMEMSDLKVPIIAIIIG 145 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHHh--------ccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 45788999999999999888753 55555544433443 332110 112345556677778899999999999
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch--HHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|.|||......||+++|.+++.|+ +.++-|+...+.+-.. ..+.+.+ .+++.++.+.|+||+|+++
T Consensus 146 ~~~gGgA~a~~~~D~v~m~~~a~~~-------v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 146 EGGSGGALALAVADQVWMLENTMYA-------VLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred CcCcHHHHHhhcCCEEEEecCceEE-------EcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence 9999988877899999999998765 4444444444443322 2233332 7799999999999999985
Q ss_pred c
Q 017189 188 S 188 (375)
Q Consensus 188 ~ 188 (375)
.
T Consensus 215 ~ 215 (256)
T PRK12319 215 H 215 (256)
T ss_pred C
Confidence 3
No 111
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.33 E-value=5.8e-06 Score=72.92 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++..+..++...|..+..++..+.|+|.=. |.|+|+.. ...+...|...+.|+++.+.|.|.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~--------------~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTA--------------GLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHH--------------HHHHHHHHHhcCCCEEEEEEeEeh
Confidence 678889999999999998765555544321 23333321 122444556678999999999999
Q ss_pred hhhhhhhhcCC--EEEEeCCeEEeccccccCCCCCccH---------------HHHHhhcch-H--HHHHHhhcCCccCH
Q 017189 113 GGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGA---------------SYFLSRLPG-F--FGEYVGLTGARLDG 172 (375)
Q Consensus 113 GgG~~Lala~D--~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~l~rl~g-~--~a~~l~ltG~~i~A 172 (375)
++|.-+++++| .|++.++++|.+.+...+..-...- ...+....| . ....++-.+.-++|
T Consensus 80 S~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta 159 (171)
T cd07017 80 SMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSA 159 (171)
T ss_pred hHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccH
Confidence 99999999999 7999999999988876554322100 001111113 1 23455567788999
Q ss_pred HHHHHcCcccee
Q 017189 173 AEMRACGLATHF 184 (375)
Q Consensus 173 ~eA~~~GLv~~v 184 (375)
+||+++||||+|
T Consensus 160 ~EA~e~GiiD~V 171 (171)
T cd07017 160 EEAKEYGLIDKI 171 (171)
T ss_pred HHHHHcCCCccC
Confidence 999999999975
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.28 E-value=3.7e-05 Score=73.66 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
..+++++-.....+.++.+++.. +-+|-|.-.+++++ |.+-.+ ....+.+.+.+..+....+|+|++|-|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~--------~G~~~aiar~l~~~a~~~VP~IsVViG 201 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK--------LGQGEAIAVNLREMFSFEVPIICTIIG 201 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH--------HhHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 45788999999999999988753 44555444334443 432211 112344555666778899999999999
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|.|||.-....||+++|.+++.|+ +.++-|+...|.+-.. ++.+ +....+++|+++++.|+||+|+|.
T Consensus 202 eggsGGAlal~~aD~V~m~e~a~~s-------VisPEg~a~Il~~d~~-~a~~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 202 EGGSGGALGIGIGDSIMMLEYAVYT-------VATPEACAAILWKDSK-KSLD-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred cccHHHHHhhhcCCeEEEeCCeEEE-------ecCHHHHHHHHhcchh-hHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 9988886555569999999999876 4444444545544332 1222 123457999999999999999984
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.28 E-value=5.2e-06 Score=73.84 Aligned_cols=142 Identities=19% Similarity=0.259 Sum_probs=92.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCc-e-EEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh
Q 017189 21 ILTLNRPRQLNALSAQMISRLLELFQRYETDSNV-K-LLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT 98 (375)
Q Consensus 21 ~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v-r-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 98 (375)
+|.|+.| ++.++...+...|..++..+.. . .|.|.+ .|+|+.. ...+...|..
T Consensus 18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~--------------g~~i~~~i~~ 72 (182)
T PF00574_consen 18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDA--------------GLAIYDAIRS 72 (182)
T ss_dssp EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHH--------------HHHHHHHHHH
T ss_pred EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHH--------------HHHHHHHHHh
Confidence 3555554 7899999999998888533222 2 223344 4444422 2345667788
Q ss_pred CCCcEEEEEccccchhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHHH---------------HHhhcch-H--
Q 017189 99 YTKPQVSILNGIVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG-F-- 158 (375)
Q Consensus 99 ~~kPvIAavnG~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~rl~g-~-- 158 (375)
++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+.+...+......-.. .+....| .
T Consensus 73 ~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~ 152 (182)
T PF00574_consen 73 SKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKE 152 (182)
T ss_dssp SSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred cCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 89999999999999999999999999 89999999999888655532111100 0111112 1
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
....++-...-++|+||+++||||+|+.+
T Consensus 153 ~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 153 EIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 12444445555899999999999999864
No 114
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.21 E-value=2.4e-05 Score=70.50 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++..+...+.+.|..++..+..+.|+|.=. |.|+++.. ...++..|...+.||++.+.|.|.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a--------------g~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA--------------GFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH--------------HHHHHHHHHhCCCCEEEEEEeeeH
Confidence 778899999999988876333333333211 33333321 123455667788999999999999
Q ss_pred hhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHH---------------HHHhhcch---HHHHHHhhcCCccCH
Q 017189 113 GGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGAS---------------YFLSRLPG---FFGEYVGLTGARLDG 172 (375)
Q Consensus 113 GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~---------------~~l~rl~g---~~a~~l~ltG~~i~A 172 (375)
+.|.-|+++||- |++.++++|.+....-|+.....-. ..++..-| .....++-...-++|
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta 173 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDS 173 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCH
Confidence 999999999985 9999999887655433321111100 00111123 123444455567999
Q ss_pred HHHHHcCccceecCC
Q 017189 173 AEMRACGLATHFVPS 187 (375)
Q Consensus 173 ~eA~~~GLv~~vv~~ 187 (375)
+||+++||||+|++.
T Consensus 174 ~EA~~yGliD~I~~~ 188 (197)
T PRK14512 174 SSAVKYGLVFEVVET 188 (197)
T ss_pred HHHHHcCCccEeecC
Confidence 999999999999976
No 115
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.20 E-value=0.00022 Score=70.18 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
.+++++-.....+.++.++... +=+|-|.-.++++ .|.+..+ ....+.+.+.+..+....+|+|+.|-|.
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe--------~Gqa~aIAr~l~ams~l~VPiISVViGe 269 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE--------LGQGEAIAFNLREMFGLRVPIIATVIGE 269 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH--------HhHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4688999999999999988753 4555554333333 3332222 1123445566777889999999999999
Q ss_pred cchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch--HHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 111 VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 111 a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
+.+||......||+++|.+++.++ +.++-|+...|.+-.. ..+.+ ...++|.++.+.|+||+|++.
T Consensus 270 GgSGGAlalg~aD~VlMle~A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 270 GGSGGALAIGCGNRMLMMENAVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred CCcHHHHHhhcCCEEEEecCCEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence 966664444468999999998755 4444444444444322 23333 338999999999999999985
No 116
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.16 E-value=5.4e-05 Score=68.34 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEE--EeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLI--LKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
+|.++..++...|-.++.++..+-|. |.+.| +|+.. ...++..|...+.||.+.+.|.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~--------------g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS--------------GLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh--------------HHHHHHHHHhcCCCEEEEEEEe
Confidence 89999999999999988544333333 33433 33221 1235556778889999999999
Q ss_pred cchhhhhhhhcCC--EEEEeCCeEEeccccccCCCCCccH----------------HHHHhhcch-H--HHHHHhhcCCc
Q 017189 111 VMGGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGA----------------SYFLSRLPG-F--FGEYVGLTGAR 169 (375)
Q Consensus 111 a~GgG~~Lala~D--~ria~~~a~f~~pe~~~G~~p~~g~----------------~~~l~rl~g-~--~a~~l~ltG~~ 169 (375)
|.+.|.-|++++| .|++.++++|.+.....|..-+... ...++...| . ....++-...-
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~ 178 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVF 178 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 9999999999999 6999999999987776553211110 011111123 1 23445555566
Q ss_pred cCHHHHHHcCccceecCCc
Q 017189 170 LDGAEMRACGLATHFVPSS 188 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~ 188 (375)
++|+||+++||||+|+.+.
T Consensus 179 lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 179 MSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CCHHHHHHcCCCcEEeecC
Confidence 9999999999999999764
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.12 E-value=6.2e-05 Score=67.56 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++..+..++...|..++.++..+-|+|.=. |.|+|+.. ...++..|...+.|+...+.|.|.
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~--------------g~~I~d~l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA--------------GLAIYDTMQFIKPDVSTICIGQAA 96 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH--------------HHHHHHHHHhcCCCEEEEEEEeec
Confidence 678888899999888887554343433211 23444321 122444566677788888899999
Q ss_pred hhhhhhhhcCC--EEEEeCCeEEeccccccCCCCCccHH---------------HHHhhcch---HHHHHHhhcCCccCH
Q 017189 113 GGGAGVSIHGR--FRVATENSVFAMPETALGLFPDIGAS---------------YFLSRLPG---FFGEYVGLTGARLDG 172 (375)
Q Consensus 113 GgG~~Lala~D--~ria~~~a~f~~pe~~~G~~p~~g~~---------------~~l~rl~g---~~a~~l~ltG~~i~A 172 (375)
+.|.-|++++| .|++.++++|.+.+..-|......-. ..+....| .....++-.+.-++|
T Consensus 97 SaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta 176 (191)
T TIGR00493 97 SMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSA 176 (191)
T ss_pred cHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcH
Confidence 99998888766 69999999999877654432111111 11222223 124556667778999
Q ss_pred HHHHHcCccceecC
Q 017189 173 AEMRACGLATHFVP 186 (375)
Q Consensus 173 ~eA~~~GLv~~vv~ 186 (375)
+||+++||||+++.
T Consensus 177 ~EA~~~GliD~ii~ 190 (191)
T TIGR00493 177 EEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHcCCccEEec
Confidence 99999999999874
No 118
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.12 E-value=0.00011 Score=76.72 Aligned_cols=139 Identities=14% Similarity=0.069 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
..+++++-++-..+.++.++... +-+|-|.=.+++++ |.+.... ...+.+.+.+..+....+|+|++|-|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~--------Gq~~aIArnl~amasl~VP~ISVViG 289 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIVSIVIG 289 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHH--------hHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 45778888999999998888753 44454443333343 3332221 12344556677788899999999999
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|.|||......||+++|.+++.|+ +.++-|+...+.+-.. .+.. +.....|+|++.+++|+||.|+|.
T Consensus 290 eggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 290 EGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred CcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence 9988887777779999999988754 4444455555544433 1111 223457999999999999999984
No 119
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.11 E-value=0.00012 Score=70.28 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
..+++++-.+...+.++.++.- ++-+|-|.-.+++++ |.+-.+ ....+.+.+++..+....+|+|+.|-|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~--------~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE--------RGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh--------ccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4578899999999999988875 455565554444443 432221 112345566777888999999999999
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|.|||.-....||+++|.+++.|+ ++++-|+...+.+-.. .+.... .-..+++.++.+.|+||.|++.
T Consensus 199 eg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~-~a~~aa-e~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 199 EGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS-KAPEAA-EAMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred CccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch-hHHHHH-HHcCCCHHHHHHCCCceEeccC
Confidence 9987776555569999999888754 5555555555555433 122211 1456899999999999999985
No 120
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.11 E-value=0.00015 Score=69.57 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
..+++++-.....+.++.+++- .+-+|-|.-.+++++ |.+..+. ...+.+.+++..+....+|+|++|-|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~--------G~~~aia~~l~a~s~~~VP~IsVViG 198 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEER--------GQSEAIARNLREMARLGVPVICTVIG 198 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHH--------HHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 3578899999999999988875 345555544333333 3322211 12344556677778899999999999
Q ss_pred ccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch--HHHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 110 IVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG--FFGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|.|||......||+++|.+++.++ ++++-|+...+.+-.. ..+.+. ..+++.++.+.|+||.|+|.
T Consensus 199 eggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae~----~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 199 EGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAEA----MKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred ccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHHH----ccCCHHHHHHCCCCeEeccC
Confidence 9977776544569999999998765 4544555555554322 222221 56789999999999999984
No 121
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.97 E-value=0.00013 Score=70.59 Aligned_cols=156 Identities=10% Similarity=0.021 Sum_probs=92.9
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH
Q 017189 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL 95 (375)
Q Consensus 16 ~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~ 95 (375)
++.|++|.|+.+=..+ -...+.+++...+..+..+ .+|||+-. |.|+..... ......+.+
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-----------~~a~~~l~~ 149 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-----------GLAASQLQR 149 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-----------HHHHHHHHH
Confidence 4678888888542111 1123445666656555433 46777654 222222110 001111344
Q ss_pred HHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc------------ccCCCCC---------ccHH-----
Q 017189 96 MATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGLFPD---------IGAS----- 149 (375)
Q Consensus 96 i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~G~~p~---------~g~~----- 149 (375)
+....||+|+.+++.|.-||+.++++||.++|.+.+.++.-.+ ++|+-+. .+..
T Consensus 150 lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~s 229 (330)
T PRK11778 150 LRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENT 229 (330)
T ss_pred HHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCC
Confidence 5677899999999999999999999999999999887665433 1222110 0000
Q ss_pred ----HHHhhcc---------------hHHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 150 ----YFLSRLP---------------GFFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 150 ----~~l~rl~---------------g~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
..+...+ +.....-+.+|+.++|++|++.||||++...+++
T Consensus 230 ee~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 230 EEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0011111 1011223468999999999999999999987665
No 122
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.97 E-value=8.8e-05 Score=71.83 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhh
Q 017189 38 ISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAG 117 (375)
Q Consensus 38 ~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~ 117 (375)
.+.+.+.|+.+..|+++++|||.=. |-|+..- -...+++.++++..-. ||++.|++.|.-||..
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~-----------as~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~ 145 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVV-----------ASELIARALKRLRAKK-PVVVSVGGYAASGGYY 145 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchh-----------HHHHHHHHHHHHhhcC-CEEEEECCeecchhhh
Confidence 5667777888889999999998743 2233221 1134445555555554 9999999999999999
Q ss_pred hhhcCCEEEEeCCeEEeccccccCCCCCcc-------------------------------HHHHHhhcc----------
Q 017189 118 VSIHGRFRVATENSVFAMPETALGLFPDIG-------------------------------ASYFLSRLP---------- 156 (375)
Q Consensus 118 Lala~D~ria~~~a~f~~pe~~~G~~p~~g-------------------------------~~~~l~rl~---------- 156 (375)
++++||.+||++.+..|---+..+. |... ....+...+
T Consensus 146 IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~ 224 (317)
T COG0616 146 IALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDK 224 (317)
T ss_pred hhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998866543332221 1110 000011110
Q ss_pred -----h--HHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 157 -----G--FFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 157 -----g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
+ .....-+.+|+.+++++|.+.||||++...++.
T Consensus 225 V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 225 VAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 1 112235689999999999999999999876543
No 123
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.89 E-value=0.00044 Score=65.20 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH
Q 017189 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDS----NVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL 95 (375)
Q Consensus 20 ~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~ 95 (375)
..+-.+..-..-++....-..+.++++.+.+|. .+-+|.|.-+|++ -+.+-.... ..+ .........
T Consensus 62 ~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqEg~~~L---~~~-a~i~~~~~~ 132 (274)
T TIGR03133 62 VVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQEANAGL---IAI-AEIMRAILD 132 (274)
T ss_pred EEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----ChhhhHHHH---HHH-HHHHHHHHH
Confidence 334444444556788888899999998887622 2346666544433 222210000 011 112222233
Q ss_pred HHhCCCcEEEEEccc--cchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-H--HHHHHhhcCCcc
Q 017189 96 MATYTKPQVSILNGI--VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-F--FGEYVGLTGARL 170 (375)
Q Consensus 96 i~~~~kPvIAavnG~--a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~--~a~~l~ltG~~i 170 (375)
+... .|+|+.+-|+ |+||+..++..||++||++++++++. +...+....| . ....-.|.-+.+
T Consensus 133 ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~~~~l 200 (274)
T TIGR03133 133 ARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRTT 200 (274)
T ss_pred HhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhccccccc
Confidence 3444 9999999999 89999999999999999998877652 1222222223 1 133344455556
Q ss_pred CHHHHHHcCccceecCCcc
Q 017189 171 DGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 171 ~A~eA~~~GLv~~vv~~~~ 189 (375)
.+...+..|++|.+++++.
T Consensus 201 GG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 201 GGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred chHhHhhcccceEEeCCHH
Confidence 7777888999999998854
No 124
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.89 E-value=0.00026 Score=64.78 Aligned_cols=136 Identities=11% Similarity=0.065 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCce--EEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 32 ALSAQMISRLLELFQRYETDSNVK--LLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
.++..+..++...|..++..+.-+ .|.|.+.|+...+| ..++..|...+-||.+.+.|
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG--------------------laIyd~m~~~~~~V~tv~~G 121 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG--------------------LGIYDTMQFISSDVATICTG 121 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH--------------------HHHHHHHHhcCCCEEEEEEE
Confidence 367888888888777766432112 22233433322221 23455677788899999999
Q ss_pred ccchhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHHH---------------HHhhcch-H--HHHHHhhcCCc
Q 017189 110 IVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG-F--FGEYVGLTGAR 169 (375)
Q Consensus 110 ~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~rl~g-~--~a~~l~ltG~~ 169 (375)
.|.+.|..|++++|. |++.++++|.+....-|......-.. .++...| . .....+-...-
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~w 201 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYW 201 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 999999999999996 99999999987776544322111000 1111223 1 23445555667
Q ss_pred cCHHHHHHcCccceecCC
Q 017189 170 LDGAEMRACGLATHFVPS 187 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~ 187 (375)
++|+||+++||||+|+..
T Consensus 202 mtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 202 MTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CCHHHHHHcCCccEEeec
Confidence 999999999999999864
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.83 E-value=0.00039 Score=62.71 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCce--EEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 32 ALSAQMISRLLELFQRYETDSNVK--LLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
.++.++...+...|..++.++.-+ -|.|.+.| +|+.. ...++..|...+-||...+.|
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~--------------GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA--------------GLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh--------------HHHHHHHHHhcCCCEEEEEEe
Confidence 478899999988888887643222 22234433 33321 123555677788899999999
Q ss_pred ccchhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHHHH-----------------Hhhcch-H--HHHHHhhcC
Q 017189 110 IVMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYF-----------------LSRLPG-F--FGEYVGLTG 167 (375)
Q Consensus 110 ~a~GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------l~rl~g-~--~a~~l~ltG 167 (375)
.|.+.|.-|++++|- |++.+++++-+....-|.. +....+ +.+..| . .-..++-..
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd 172 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERD 172 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccC
Confidence 999999999999995 9999999998877765542 111111 112223 1 133444455
Q ss_pred CccCHHHHHHcCccceecCCcc
Q 017189 168 ARLDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~ 189 (375)
.-++|+||+++||||+|+++..
T Consensus 173 ~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 173 YFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred cccCHHHHHHcCCCcEEeccCC
Confidence 5699999999999999997644
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.81 E-value=0.00043 Score=62.31 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEE--EeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLI--LKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
++.++..++...|..++.++..+-|. |-+.| +|+.. ...++..|...+-||...+.|.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~--------------g~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD--------------GLGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh--------------HHHHHHHHHhcCCCEEEEEEEE
Confidence 79999999999999888543223333 33333 33321 1234556677888999999999
Q ss_pred cchhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHHH---------------HHhhcch-H--HHHHHhhcCCcc
Q 017189 111 VMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASY---------------FLSRLPG-F--FGEYVGLTGARL 170 (375)
Q Consensus 111 a~GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~rl~g-~--~a~~l~ltG~~i 170 (375)
|.+.|..|++++|- |++.++++|.+....-|..-...-.. .+....| . ....++-...-+
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~m 173 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFM 173 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCC
Confidence 99999999999985 88999999887776433221111000 0111123 1 134444555569
Q ss_pred CHHHHHHcCccceecCCc
Q 017189 171 DGAEMRACGLATHFVPSS 188 (375)
Q Consensus 171 ~A~eA~~~GLv~~vv~~~ 188 (375)
+|+||+++||||+|++..
T Consensus 174 sa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 174 SPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CHHHHHHcCCCcEEeccC
Confidence 999999999999999764
No 127
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.77 E-value=0.0015 Score=62.43 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=88.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCC----CceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHH
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDS----NVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY 94 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~ 94 (375)
|..+-.+..=..-++.......+.++++.+.++. -+-+|.|.-+|++ -+.+-.... ..+ ...+..+.
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~~L---~~~-a~i~~~~~ 140 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANAGL---AAI-AEIMRAIV 140 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHHHH---HHH-HHHHHHHH
Confidence 3444444444567888899999999999887764 1556666554433 222110000 011 12222223
Q ss_pred HHHhCCCcEEEEEccc--cchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcch-H--HHHHHhhcCCc
Q 017189 95 LMATYTKPQVSILNGI--VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPG-F--FGEYVGLTGAR 169 (375)
Q Consensus 95 ~i~~~~kPvIAavnG~--a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g-~--~a~~l~ltG~~ 169 (375)
.+... +|+|+.+-|. |+||+...+..||++||++++++++. +...+....| . ...+..+..+.
T Consensus 141 ~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~~vw~~ 208 (301)
T PRK07189 141 DLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWRT 208 (301)
T ss_pred HHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhcccccc
Confidence 34444 9999999999 99999999999999999998877652 1212222122 0 12222222222
Q ss_pred cCHHHHHHcCccceecCCcc
Q 017189 170 LDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~ 189 (375)
+.+......|.+|.+++++.
T Consensus 209 lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 209 TGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred cCcceeeecccceEEeCCHH
Confidence 33334456899999998754
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.66 E-value=0.0026 Score=60.68 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=93.1
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHH
Q 017189 16 TSFVRILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY 94 (375)
Q Consensus 16 ~~~v~~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~ 94 (375)
.|.-..|.-|.+. ...+++....+.+.++++.+.+. .+-+|.|.-+|++ -+.+ .... ..........+.
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgGa-----rmqE---gi~s-L~~~ak~~~a~~ 188 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGGA-----RMQE---GLLS-LMQMAKTSAALK 188 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----chhh---hhhH-HHhHHHHHHHHH
Confidence 3333334444444 66789999999999999998876 4677777755532 2211 0000 000112223334
Q ss_pred HHHhCCCcEEEEEccccchhhh-hhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHH
Q 017189 95 LMATYTKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGA 173 (375)
Q Consensus 95 ~i~~~~kPvIAavnG~a~GgG~-~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~ 173 (375)
++.....|.|+.+.|+|+||+. ..++.+|++||.++|.+++-..+ .+...++ ..+ .-+.-+++
T Consensus 189 ~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~---e~l--pe~~~~ae 252 (292)
T PRK05654 189 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVR---EKL--PEGFQRAE 252 (292)
T ss_pred HHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhh---hhh--hhhhcCHH
Confidence 4556679999999999999975 46778999999998877763221 1111111 111 11122566
Q ss_pred HHHHcCccceecCCccHHH
Q 017189 174 EMRACGLATHFVPSSRLAL 192 (375)
Q Consensus 174 eA~~~GLv~~vv~~~~l~~ 192 (375)
-+.+.|+||.||++.++..
T Consensus 253 ~~~~~G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 253 FLLEHGAIDMIVHRRELRD 271 (292)
T ss_pred HHHhCCCCcEEECHHHHHH
Confidence 6778999999999988743
No 129
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.64 E-value=0.0027 Score=58.87 Aligned_cols=154 Identities=9% Similarity=0.003 Sum_probs=93.6
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH
Q 017189 17 SFVRILTLNRPRQLNALSAQMISRLLELFQRY-ETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL 95 (375)
Q Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~-~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~ 95 (375)
|.-..|.=|.|.. .++.+-...+.+.+..+ +.+.++-+|.|.=..+ |-.|..-+.. ...+.+.++...
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~--------G~~~a~A~l~~a 99 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL--------GINQALAHLAKA 99 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH--------HHHHHHHHHHHH
Confidence 4434444455542 68878888888888885 4556666666654432 3333322211 122233334444
Q ss_pred H---HhCCCcEEEEEccccchhhh-hhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhc--CCc
Q 017189 96 M---ATYTKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLT--GAR 169 (375)
Q Consensus 96 i---~~~~kPvIAavnG~a~GgG~-~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~lt--G~~ 169 (375)
+ ...+.|+|+.|-|.++|||+ .+.+.+|.++|-+++. ++..+.-++...+.+-... ..++.-+ -..
T Consensus 100 ~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~-------i~vm~~e~aa~I~~~~~~~-~~e~a~~~~~~a 171 (238)
T TIGR03134 100 LALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAM-------VHVMDLESMARVTKRSVEE-LEALAKSSPVFA 171 (238)
T ss_pred HHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcE-------EEecCHHHHHHHHccCHhH-HHHHHHhhhhhc
Confidence 4 45669999999999999886 5666688887776665 5566666666555544432 2222111 123
Q ss_pred cCHHHHHHcCccceecCCcc
Q 017189 170 LDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~ 189 (375)
.+...+.++|+||.++++.+
T Consensus 172 ~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 172 PGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred cCHHHHHhCCCccEEeCCCC
Confidence 57778999999999998655
No 130
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.55 E-value=0.00065 Score=63.33 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
+.++.+...++.++++....+..+- ++|.. -|+++. .-.++...+.+.+.|+++.|++.
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~--------------AA~~I~~~l~~~~~~v~v~VP~~ 128 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVD--------------AAEQIARALREHPAKVTVIVPHY 128 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHH--------------HHHHHHHHHHhCCCCEEEEECcc
Confidence 5688899999999999887765543 33433 333332 12345667788999999999999
Q ss_pred cchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCc
Q 017189 111 VMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDI 146 (375)
Q Consensus 111 a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~ 146 (375)
|+.||.-++|+||-++|.+.+.+|--..++|-.|..
T Consensus 129 A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 129 AMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred cccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 999999999999999999999999999999887743
No 131
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.51 E-value=0.0012 Score=69.26 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhh
Q 017189 37 MISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGA 116 (375)
Q Consensus 37 ~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~ 116 (375)
.+.++.++++.+.+|+.|++|||.-.+ +.|+.+.. .+.+++.+..+....|||||..++++ -+|+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~-----------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Y 141 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH-----------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQY 141 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH-----------HHHHHHHHHHHHhcCCeEEEEEcccc-chhh
Confidence 578999999999999999999998753 12333222 12344455566667899999988876 5789
Q ss_pred hhhhcCCEEEEeCCeEEec
Q 017189 117 GVSIHGRFRVATENSVFAM 135 (375)
Q Consensus 117 ~Lala~D~ria~~~a~f~~ 135 (375)
-|+.+||-+++.+.+.+++
T Consensus 142 ylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 142 YLASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhhhCCEEEECCCceEEe
Confidence 9999999999999877755
No 132
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.50 E-value=0.00015 Score=62.73 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=59.8
Q ss_pred HhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEecccc------------ccCC---------CCCcc--------
Q 017189 97 ATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPET------------ALGL---------FPDIG-------- 147 (375)
Q Consensus 97 ~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~------------~~G~---------~p~~g-------- 147 (375)
.+..|||||.++|.|..+|+-|+.+||-+++.+.+.++..-+ ++|+ ....+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 567899999999999999999999999999999887665433 1332 11111
Q ss_pred -HHHHHhhcc---------------h--HHHHHHhhcCCccCHHHHHHcCccceecCCccH
Q 017189 148 -ASYFLSRLP---------------G--FFGEYVGLTGARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 148 -~~~~l~rl~---------------g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
.-..+.+++ | .....-+..|..++|++|++.||||++-..+++
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~ 143 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence 111111111 1 011122579999999999999999999876665
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.38 E-value=0.0074 Score=57.39 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhC
Q 017189 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATY 99 (375)
Q Consensus 20 ~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 99 (375)
+.+..|..-..-+++....+.+.++++.+.+. .+-+|.|..+|++- +.+ ....-.. .......+.++...
T Consensus 123 ~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGaR-----mqE---g~~sL~~-~ak~~~~~~~~~~~ 192 (285)
T TIGR00515 123 VVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGAR-----MQE---ALLSLMQ-MAKTSAALAKMSER 192 (285)
T ss_pred EEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCcc-----ccc---chhHHHh-HHHHHHHHHHHHcC
Confidence 33333433356789999999999999988765 56777777655431 111 0000001 11222233445566
Q ss_pred CCcEEEEEccccchhhh-hhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHHHHc
Q 017189 100 TKPQVSILNGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMRAC 178 (375)
Q Consensus 100 ~kPvIAavnG~a~GgG~-~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA~~~ 178 (375)
..|.|+++-|+|.||+. ..++.+|++||.++|.+++...+ .+...+| .. +.-+.-+|+-+.+.
T Consensus 193 ~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~---e~--lpe~~q~ae~~~~~ 256 (285)
T TIGR00515 193 GLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVR---EK--LPEGFQTSEFLLEH 256 (285)
T ss_pred CCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhc---Cc--cchhcCCHHHHHhC
Confidence 79999999999999975 46679999999999987763322 1111111 00 11112245557788
Q ss_pred CccceecCCccHHH
Q 017189 179 GLATHFVPSSRLAL 192 (375)
Q Consensus 179 GLv~~vv~~~~l~~ 192 (375)
|+||.||++.++..
T Consensus 257 G~vD~iv~~~~~r~ 270 (285)
T TIGR00515 257 GAIDMIVHRPEMKK 270 (285)
T ss_pred CCCcEEECcHHHHH
Confidence 99999999988743
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0053 Score=60.96 Aligned_cols=147 Identities=10% Similarity=0.101 Sum_probs=105.7
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEe-eCCCCccccCCchhHhhccchhhHHHHHHHHHHH
Q 017189 16 TSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILK-GKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNY 94 (375)
Q Consensus 16 ~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~ 94 (375)
+..|..|.++. .+++.+.+.+.+.++.++++.. -+|||. -.. ..+.+.+.++.+
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTP-------------------GGl~~sm~~iv~ 79 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTP-------------------GGLLDSMRQIVR 79 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCC-------------------CchHHHHHHHHH
Confidence 34567777754 5899999999999999998752 334433 111 112345677889
Q ss_pred HHHhCCCcEEEEEc---cccchhhhhhhhcCCEEEEeCCeEEeccccccCC---CCCcc-HHHHHh------hcch---H
Q 017189 95 LMATYTKPQVSILN---GIVMGGGAGVSIHGRFRVATENSVFAMPETALGL---FPDIG-ASYFLS------RLPG---F 158 (375)
Q Consensus 95 ~i~~~~kPvIAavn---G~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~---~p~~g-~~~~l~------rl~g---~ 158 (375)
.+.+.+.|||..|. ++|.-+|.-++++||+..|.+.+.++....-.+- .+... .+..+. +.-| .
T Consensus 80 ~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~ 159 (436)
T COG1030 80 AILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPT 159 (436)
T ss_pred HHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChH
Confidence 99999999999985 4699999999999999999999998854443222 11111 122222 2334 2
Q ss_pred HHHHHhhcCCccCHHHHHHcCccceecCC
Q 017189 159 FGEYVGLTGARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 159 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~ 187 (375)
.|..++.-...++++||.+.|++|-+..+
T Consensus 160 ~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 160 WAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred HHHHHhhhccCCChhHHHhcCccccccCC
Confidence 37889999999999999999999988765
No 135
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.23 E-value=0.021 Score=54.37 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=87.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH-HH
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL-MA 97 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~-i~ 97 (375)
|+....+..=..-++....-+.+.++++.+.+.. +-+|+|+.+|++ -+.+-.... ..+ ......+.. ..
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGGA-----RmQEg~~sL---~qm-ak~saa~~~~~~ 204 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGGA-----RMQEGSLSL---MQM-AKISSALYDYQS 204 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCCc-----cccccchhh---hhh-HHHHHHHHHHHH
Confidence 3444444444567899999999999999887754 667777765543 221100000 001 111111222 22
Q ss_pred hCCCcEEEEEccccchhhhh-hhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCc-----cC
Q 017189 98 TYTKPQVSILNGIVMGGGAG-VSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGAR-----LD 171 (375)
Q Consensus 98 ~~~kPvIAavnG~a~GgG~~-Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~-----i~ 171 (375)
.-..|.|+++.|+|.||+.. +++.||++|+.+++.+++.-.+ .+.. .+|+. =+
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~----------t~ge~lpe~fq~ 263 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQ----------TLNKTVPEGSQA 263 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHH----------hcCCcCCccccc
Confidence 45699999999999999875 5777999999888876653221 1111 12222 23
Q ss_pred HHHHHHcCccceecCCccHHH
Q 017189 172 GAEMRACGLATHFVPSSRLAL 192 (375)
Q Consensus 172 A~eA~~~GLv~~vv~~~~l~~ 192 (375)
|+-..+.|+||.+|+..++..
T Consensus 264 ae~l~~~G~vD~iV~r~~lr~ 284 (296)
T CHL00174 264 AEYLFDKGLFDLIVPRNLLKG 284 (296)
T ss_pred HHHHHhCcCceEEEcHHHHHH
Confidence 555678999999999877643
No 136
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.19 E-value=0.013 Score=60.53 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=96.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCC
Q 017189 22 LTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYT 100 (375)
Q Consensus 22 itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 100 (375)
|.-|.|. ...+++....+...+.++.+.+. ++-+|.|.-.++ |..|.+-.. ........+++.++....
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~--------~g~~~~~a~~~~a~~~~~ 388 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY--------GGIIRHGAKVLYAYSEAT 388 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH--------HHHHHHHHHHHHHHHhCC
Confidence 3444443 34579999999999999988774 466666654443 555543221 223345556777888899
Q ss_pred CcEEEEEccccchhhhhhhh----cCCEEEEeCCeEEeccccccCCCCCccHHHHHhhc-c---h--HHH--HHH-hhcC
Q 017189 101 KPQVSILNGIVMGGGAGVSI----HGRFRVATENSVFAMPETALGLFPDIGASYFLSRL-P---G--FFG--EYV-GLTG 167 (375)
Q Consensus 101 kPvIAavnG~a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl-~---g--~~a--~~l-~ltG 167 (375)
+|.|+.|-|.+.|||..-+. .+|+++|.+++.++ +.++-++...+.+. + . ..+ ..+ -..-
T Consensus 389 vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~ 461 (512)
T TIGR01117 389 VPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYRE 461 (512)
T ss_pred CCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHH
Confidence 99999999999888654332 38998887777654 44444433333221 1 0 101 111 1122
Q ss_pred CccCHHHHHHcCccceecCCccHH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRLA 191 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l~ 191 (375)
+..++..+.+.|+||.|+++.+..
T Consensus 462 ~~~~~~~~a~~g~vD~VI~P~~tR 485 (512)
T TIGR01117 462 EFANPYKAAARGYVDDVIEPKQTR 485 (512)
T ss_pred hhcCHHHHHhcCCCCeeEChHHHH
Confidence 245788999999999999998763
No 137
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.18 E-value=0.0083 Score=61.71 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=88.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccC--CchhHhhccchhhHHHHHHHHHHHHHHhCCCc
Q 017189 25 NRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGG--DVAAVVRGINEGAKFFSKEFILNYLMATYTKP 102 (375)
Q Consensus 25 nrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP 102 (375)
+..-...+++......+.++++.+.++. +-+|.|.- |.|+ .+.+-... .........-...+.. ..|
T Consensus 65 D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~----l~~~g~i~~~~~~~~~-~iP 133 (493)
T PF01039_consen 65 DFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVES----LMGMGRIFRAIARLSG-GIP 133 (493)
T ss_dssp ETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHH----HHHHHHHHHHHHHHHT-TS-
T ss_pred ccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhh----hhhhHHHHHHHHHHhc-CCC
Confidence 3334567899999999999999988764 45555554 3333 33332211 1111223333444556 899
Q ss_pred EEEEEccccchhhhhhhhcCCEEEEeCC-eEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHH------
Q 017189 103 QVSILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEM------ 175 (375)
Q Consensus 103 vIAavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA------ 175 (375)
+|+++.|+|.|||..++..||++|+.++ +.+++. +...+. ..+|+.++.++.
T Consensus 134 ~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~~~~~lgG~~~h 192 (493)
T PF01039_consen 134 QISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEVDSEELGGADVH 192 (493)
T ss_dssp EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCTSHHHHHBHHHH
T ss_pred eEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccccchhhhhhhhh
Confidence 9999999999999999999999999997 775532 111111 246777777653
Q ss_pred -HHcCccceecCCcc
Q 017189 176 -RACGLATHFVPSSR 189 (375)
Q Consensus 176 -~~~GLv~~vv~~~~ 189 (375)
...|.+|.++++++
T Consensus 193 ~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 193 AAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHTSSSSSEEESSHH
T ss_pred cccCCCceEEEechH
Confidence 36899999998754
No 138
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.06 E-value=0.012 Score=52.71 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=87.3
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEE--EeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhC
Q 017189 22 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLI--LKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATY 99 (375)
Q Consensus 22 itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 99 (375)
|.|..| ++..+...+...+..++.++..+-|. |-+.|+...+| ..++..|...
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG--------------------~AIydtm~~i 84 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG--------------------LAIYDTMQFI 84 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh--------------------HHHHHHHHhc
Confidence 555544 44455555665555555544334333 34444433333 2245567789
Q ss_pred CCcEEEEEccccchhhhhhhhcCCEE--EEeCCeEEeccccccCCCCCccHHHHH-h---------------hcch-HH-
Q 017189 100 TKPQVSILNGIVMGGGAGVSIHGRFR--VATENSVFAMPETALGLFPDIGASYFL-S---------------RLPG-FF- 159 (375)
Q Consensus 100 ~kPvIAavnG~a~GgG~~Lala~D~r--ia~~~a~f~~pe~~~G~~p~~g~~~~l-~---------------rl~g-~~- 159 (375)
+.||...|-|.|...|..|+++++.. ++.+++++-..... |.+-+...=... + .--| ..
T Consensus 85 k~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e 163 (200)
T COG0740 85 KPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLE 163 (200)
T ss_pred CCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999975 88888888766665 333222110000 0 1112 11
Q ss_pred -HHHHhhcCCccCHHHHHHcCccceecCCcc
Q 017189 160 -GEYVGLTGARLDGAEMRACGLATHFVPSSR 189 (375)
Q Consensus 160 -a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 189 (375)
-....-...-++|+||+++||||+|+....
T Consensus 164 ~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 164 KIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 122233444589999999999999998654
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.98 E-value=0.017 Score=52.88 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCce--EEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVK--LLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
++.++...+...|-.++.++..+ -+-|-+.|+...+|-=+... .....++..|...+-||...+-|.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v-----------~~glaIyD~m~~ik~~V~Tv~~G~ 117 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE-----------TEAFAICDTMRYIKPPVHTICIGQ 117 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc-----------ccHHHHHHHHHhcCCCeEEEEEee
Confidence 34448888888888886543222 33345555544444111000 111234455666778899999999
Q ss_pred cchhhhhhhhcCCE--EEEeCCeEEeccccccCCCCCccHHHH------Hh-----------hcch-H--HHHHHhhcCC
Q 017189 111 VMGGGAGVSIHGRF--RVATENSVFAMPETALGLFPDIGASYF------LS-----------RLPG-F--FGEYVGLTGA 168 (375)
Q Consensus 111 a~GgG~~Lala~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~------l~-----------rl~g-~--~a~~l~ltG~ 168 (375)
|.+.+..|++++|- |++.++++|-+....-|.. + -++-+ +- ...| . .-...+-.-.
T Consensus 118 AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~ 195 (222)
T PRK12552 118 AMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMF 195 (222)
T ss_pred hhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999999995 9999999998877654432 1 11111 10 1112 0 1122233334
Q ss_pred ccCHHHHHHcCccceecCC
Q 017189 169 RLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 169 ~i~A~eA~~~GLv~~vv~~ 187 (375)
-++|+||+++||||+|+.+
T Consensus 196 wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 196 YLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCHHHHHHcCCCcEEecc
Confidence 5899999999999999975
No 140
>PRK10949 protease 4; Provisional
Probab=96.98 E-value=0.011 Score=62.22 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhh
Q 017189 37 MISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGA 116 (375)
Q Consensus 37 ~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~ 116 (375)
.+.++.++++.+..|+.|++|||.-.+. .|..+.. .+.+++.+..+....|||||.-+.++ -+|.
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~-----------~~eI~~ai~~fk~sGKpVvA~~~~~~-s~~Y 160 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS-----------MQYIGKALREFRDSGKPVYAVGDSYS-QGQY 160 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH-----------HHHHHHHHHHHHHhCCeEEEEecCcc-chhh
Confidence 4568999999999999999999997531 1222111 12344455566677899999655444 4689
Q ss_pred hhhhcCCEEEEeCCeEEecc
Q 017189 117 GVSIHGRFRVATENSVFAMP 136 (375)
Q Consensus 117 ~Lala~D~ria~~~a~f~~p 136 (375)
-|+.+||-+++.+.+.+++.
T Consensus 161 yLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 161 YLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhCCEEEECCCceEEEe
Confidence 99999999999998776543
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.62 E-value=0.035 Score=57.82 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEE
Q 017189 25 NRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQV 104 (375)
Q Consensus 25 nrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 104 (375)
+..=+..+++....+.+.++++.+.+.. +-+|.|.-+|+++-.+ ....+.. ...+..+.....++.....|.|
T Consensus 137 D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~~-----~~~~g~if~~~~~ls~~~VP~I 209 (569)
T PLN02820 137 DPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFPD-----RDHFGRIFYNQARMSSAGIPQI 209 (569)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccch-----HhHHHHHHHHHHHHhCCCCCEE
Confidence 3333567999999999999999988764 5666666554444221 1111100 0011122222233455679999
Q ss_pred EEEccccchhhhhhhhcCCEEEEeCC-eEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHH-----H--
Q 017189 105 SILNGIVMGGGAGVSIHGRFRVATEN-SVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEM-----R-- 176 (375)
Q Consensus 105 AavnG~a~GgG~~Lala~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA-----~-- 176 (375)
++|-|.|.|||..+...||++|++++ +.+.+ ++...+.. .||+.+++++. +
T Consensus 210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------aGP~vV~~----------~~Ge~v~~eeLGGa~~h~~ 268 (569)
T PLN02820 210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------AGPPLVKA----------ATGEEVSAEDLGGADVHCK 268 (569)
T ss_pred EEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------cCHHHHHh----------hcCcccCHHHhCCHHHhcc
Confidence 99999999999999999999999875 54443 11111111 35555555554 3
Q ss_pred HcCccceecCCcc
Q 017189 177 ACGLATHFVPSSR 189 (375)
Q Consensus 177 ~~GLv~~vv~~~~ 189 (375)
..|.+|.+++++.
T Consensus 269 ~sGv~d~~~~de~ 281 (569)
T PLN02820 269 VSGVSDHFAQDEL 281 (569)
T ss_pred cccccccccCchH
Confidence 3799998888754
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.51 E-value=0.038 Score=57.04 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=78.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCcc-ccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEE
Q 017189 29 QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFC-AGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSIL 107 (375)
Q Consensus 29 ~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~-aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 107 (375)
+.-+++....+.+.++++.+.++. +-+|.|.-+|+++- -|.+ .+. .+.+.+... . ...-..|.|++|
T Consensus 94 ~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGarm~eg~~--~l~-------~~~~~~~~~-~-~~s~~iP~Isvv 161 (512)
T TIGR01117 94 MGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGARIQEAVD--ALK-------GYGDIFYRN-T-IASGVVPQISAI 161 (512)
T ss_pred cccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCCCccccch--hhh-------hHHHHHHHH-H-HHcCCCcEEEEE
Confidence 567899999999999999888765 45566554433321 1111 010 111111111 1 123358999999
Q ss_pred ccccchhhhhhhhcCCEEEEeCCe-EEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHH-----H--HcC
Q 017189 108 NGIVMGGGAGVSIHGRFRVATENS-VFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEM-----R--ACG 179 (375)
Q Consensus 108 nG~a~GgG~~Lala~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA-----~--~~G 179 (375)
.|.|.||+......||++|+++++ .+++ ++...+.. .+|+.+++++. + .-|
T Consensus 162 ~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~----------~~Ge~v~~e~lGGa~~h~~~sG 220 (512)
T TIGR01117 162 MGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKT----------VTGEEVTAEQLGGAMAHNSVSG 220 (512)
T ss_pred ecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHh----------hcCcccchhhcchHHHhccccc
Confidence 999999998777799999999964 4443 11111221 34555555444 3 489
Q ss_pred ccceecCCcc
Q 017189 180 LATHFVPSSR 189 (375)
Q Consensus 180 Lv~~vv~~~~ 189 (375)
.+|.+++++.
T Consensus 221 v~d~~~~de~ 230 (512)
T TIGR01117 221 VAHFIAEDDD 230 (512)
T ss_pred eeEEecCChH
Confidence 9999998744
No 143
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.33 E-value=0.049 Score=55.69 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=108.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEE
Q 017189 25 NRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQV 104 (375)
Q Consensus 25 nrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 104 (375)
+.+-+.-++..-..+.+.++.+.+.++..-.+.+..|.| +.+.+-... ...+...+.-..++... .|.|
T Consensus 99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~~----l~g~g~iF~~~a~~Sg~-IPqI 167 (526)
T COG4799 99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVPS----LAGYGRIFYRNARASGV-IPQI 167 (526)
T ss_pred cCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCccc----cccchHHHHHHHHhccC-CCEE
Confidence 345577788888888888888888877554555555544 222221100 11112223233445555 9999
Q ss_pred EEEccccchhhhhhhhcCCEEEEeCCe-EEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHH-------H
Q 017189 105 SILNGIVMGGGAGVSIHGRFRVATENS-VFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEM-------R 176 (375)
Q Consensus 105 AavnG~a~GgG~~Lala~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA-------~ 176 (375)
++|-|.|.|||.-+...||++|+.++. ++.+ + |+..-. ..||+.++++|. .
T Consensus 168 svv~G~c~gGgaY~pal~D~~imv~~~~~mfl-----------t---------GP~~ik-~vtGe~V~~e~LGGa~vh~~ 226 (526)
T COG4799 168 SVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL-----------T---------GPPVIK-AVTGEEVSAEELGGAQVHAR 226 (526)
T ss_pred EEEEecCcccccccccccceEEEEcCCccEEe-----------e---------CHHHHH-hhcCcEeehhhccchhhhcc
Confidence 999999999999999999999999984 3221 0 111111 135665555542 2
Q ss_pred HcCccceecCCccH-HHHHHHH-HhcCCCChHH--HH-------HHHHHhccCCCCCcchhhhHHHHHHHHhCcCCHHHH
Q 017189 177 ACGLATHFVPSSRL-ALLEEAL-YKVNSSDPAV--IS-------AVIDKFSLEPYLKDHSAYHWMDVIDKCFSRRTVEEI 245 (375)
Q Consensus 177 ~~GLv~~vv~~~~l-~~~~~~l-~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 245 (375)
..|.+|.+.+++.- ....+.+ .-+++..... +. .--+......+.++....+-...|.+.|+.+++.|+
T Consensus 227 ~sGva~~~a~dd~~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~ 306 (526)
T COG4799 227 KSGVADLLAEDDEDAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEF 306 (526)
T ss_pred cccceeeeecCHHHHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHH
Confidence 34888888876431 1122222 2222211110 00 000000011222333344667899999998899887
Q ss_pred HHHHhhc
Q 017189 246 LSALESE 252 (375)
Q Consensus 246 ~~~L~~~ 252 (375)
-...-.+
T Consensus 307 ~~~~a~~ 313 (526)
T COG4799 307 KAGYAKN 313 (526)
T ss_pred HhhhCcc
Confidence 7655443
No 144
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.85 E-value=0.0099 Score=55.78 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcC
Q 017189 88 KEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTG 167 (375)
Q Consensus 88 ~~~~l~~~i~~~~kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG 167 (375)
.+.+-...+.++++|+||.|=|---+||.-=...+|.++|-++++|+. +.|.++ +..|.+=.. ++.+. -..
T Consensus 176 AIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~-AsILWkD~~-ka~eA-Ae~ 246 (317)
T COG0825 176 AIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGC-ASILWKDAS-KAKEA-AEA 246 (317)
T ss_pred HHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhh-hhhhhcChh-hhHHH-HHH
Confidence 344455667899999999999877666655455689999999999873 334444 444444322 22222 244
Q ss_pred CccCHHHHHHcCccceecCC
Q 017189 168 ARLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~ 187 (375)
..|+|.+.+++||||.|+|.
T Consensus 247 mkita~dLk~lgiID~II~E 266 (317)
T COG0825 247 MKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cCCCHHHHHhCCCcceeccC
Confidence 57999999999999999985
No 145
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.49 E-value=0.38 Score=45.03 Aligned_cols=147 Identities=13% Similarity=0.144 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT 98 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 98 (375)
|+...++-.=-..+|..-.=+.|.++++.+-++ .+.+|+++.+|++=..-+-+. --........+.++..
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGARMQEg~lS---------LMQMaktsaAl~~l~e 193 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGARMQEGILS---------LMQMAKTSAALKRLSE 193 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcchhHhHHHHH---------HHHHHHHHHHHHHHHh
Confidence 344445544445678877888899999888775 588999988774321111110 0011222334556777
Q ss_pred CCCcEEEEEccccchhh-hhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCccCHHHHHH
Q 017189 99 YTKPQVSILNGIVMGGG-AGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGARLDGAEMRA 177 (375)
Q Consensus 99 ~~kPvIAavnG~a~GgG-~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~i~A~eA~~ 177 (375)
-..|.|+.+..+.+||= ..+++..|+.||-++|.++|...++ --+.+..-++ -..=+++-.++
T Consensus 194 a~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LP---------egfQ~aEfLle 257 (294)
T COG0777 194 AGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLP---------EGFQTAEFLLE 257 (294)
T ss_pred cCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCC---------cchhhHHHHHH
Confidence 88999999999999874 5799999999999888876643321 1111111111 00113444569
Q ss_pred cCccceecCCccHH
Q 017189 178 CGLATHFVPSSRLA 191 (375)
Q Consensus 178 ~GLv~~vv~~~~l~ 191 (375)
.|+||.||+..++.
T Consensus 258 hG~iD~iv~R~elr 271 (294)
T COG0777 258 HGMIDMIVHRDELR 271 (294)
T ss_pred cCCceeeecHHHHH
Confidence 99999999987663
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.76 E-value=0.36 Score=49.74 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=92.8
Q ss_pred EEEEcCCCCC-CCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhC
Q 017189 21 ILTLNRPRQL-NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATY 99 (375)
Q Consensus 21 ~itlnrp~~~-Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 99 (375)
-|.-|+|... -+++.+-.....+.++.++. .++-+|.|.-. ..|..|..-+. ....+...+++.++..+
T Consensus 297 Giian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E~--------~g~~~~ga~~~~a~~~~ 366 (493)
T PF01039_consen 297 GIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAER--------AGIIRAGARLLYALAEA 366 (493)
T ss_dssp EEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHHH--------TTHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhhh--------cchHHHHHHHHHHHHcC
Confidence 3445666422 26999999999999999987 45777777643 23555532211 23455667788999999
Q ss_pred CCcEEEEEccccchhhhhhhhcC----CEEEEeCCeEEeccccccCCCCCccHHHHHhhcch---H---------HHHHH
Q 017189 100 TKPQVSILNGIVMGGGAGVSIHG----RFRVATENSVFAMPETALGLFPDIGASYFLSRLPG---F---------FGEYV 163 (375)
Q Consensus 100 ~kPvIAavnG~a~GgG~~Lala~----D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g---~---------~a~~l 163 (375)
..|+|+.|-|.+.|||....... |+++|.++++ +|++++-++...+.+.-- . ....+
T Consensus 367 ~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~-------~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 439 (493)
T PF01039_consen 367 TVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAE-------IGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKI 439 (493)
T ss_dssp -S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-E-------EESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHH
T ss_pred CCCEEEEEeCCccCcchhhhcccccchhhhhhhhcce-------eeecChhhhheeeehhhhhhhhcccchhHHHHHHHH
Confidence 99999999999999877444444 7776666665 455555554444432210 0 11111
Q ss_pred hh-cCCccCHHHHHHcCccceecCCccHH
Q 017189 164 GL-TGARLDGAEMRACGLATHFVPSSRLA 191 (375)
Q Consensus 164 ~l-tG~~i~A~eA~~~GLv~~vv~~~~l~ 191 (375)
-- .-...++..+...|++|.++++.+..
T Consensus 440 ~~~~~~~~~~~~~a~~~~~D~ii~p~~tR 468 (493)
T PF01039_consen 440 AEYEDELSSPYRAASRGYVDDIIDPAETR 468 (493)
T ss_dssp HHHHHHHSSHHHHHHTTSSSEESSGGGHH
T ss_pred HHHHHhcCCHHHHHhcCCCCCccCHHHHH
Confidence 11 11225889999999999999998863
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=93.67 E-value=0.82 Score=47.82 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccc
Q 017189 31 NALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGI 110 (375)
Q Consensus 31 Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~ 110 (375)
-+++.+-.....+.++.+++ -++-+|-|.-..+ |..|.+-+. ....+...+++.++....+|.|+.|-|.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~--------~G~~~~~a~l~~A~a~~~VP~isvi~g~ 449 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA--------SGIAKAGAKMVMAVACAKVPKITIIVGG 449 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH--------hhHHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 35788888888888888876 4566666654332 666654332 2245566778888899999999999999
Q ss_pred cchhhhhhhh----cCCEEEEeCCeEEeccccccCCCCCccHHHHHhhc-c------------hHH-HH-H-H-hhcCCc
Q 017189 111 VMGGGAGVSI----HGRFRVATENSVFAMPETALGLFPDIGASYFLSRL-P------------GFF-GE-Y-V-GLTGAR 169 (375)
Q Consensus 111 a~GgG~~Lal----a~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl-~------------g~~-a~-~-l-~ltG~~ 169 (375)
|+|+|..-.+ ..|+++|.+++ .+|+.++-++...+.+. + -.. +. . + -..-+.
T Consensus 450 a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (569)
T PLN02820 450 SFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYERE 522 (569)
T ss_pred cchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHh
Confidence 9998754333 55666665555 56666666666555431 1 011 00 0 0 112224
Q ss_pred cCHHHHHHcCccceecCCccH
Q 017189 170 LDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 170 i~A~eA~~~GLv~~vv~~~~l 190 (375)
.++..|...|+||.|+++.+.
T Consensus 523 ~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 523 ANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred CCHHHHHHcCCcCcccCHHHH
Confidence 577788899999999999765
No 148
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.36 E-value=0.13 Score=51.40 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCcchHHhhHhhh---hccCCCCCCCCCCC
Q 017189 263 DAIQSLKKASPTSLKISLRSIREGRLQGVGQCLIREYRMVCHVMMGEVSKDFFEGCRAI---LLDKDKNPKWKPSK 335 (375)
Q Consensus 263 ~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egv~A~---l~ek~r~P~w~~~~ 335 (375)
+.+++++..+|.++..+|+.++... .+....+..+...+..++.++ |+.|++++| + +| |.|.|.-+.
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~~---d~~ei~~al~~~~-~k-r~~~wa~~~ 297 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSHD---TVEEIIDSLEIEA-GR-RKDTWCITT 297 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcCC---CHHHHHHHHHhhh-cc-cchHHHHHH
Confidence 4467888889999999999997653 346677788888888999754 999999998 4 66 678887543
No 149
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=1.4 Score=40.94 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 33 LSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 33 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
++.++-..+...|-.++.+++-|=|.+.=. |-|+++.. ...++..+..+.-||=..+=|.|.
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta--------------glAIYDtMq~ik~~V~Tic~G~Aa 162 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA--------------GLAIYDTMQYIKPDVSTICVGLAA 162 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch--------------hhhHHHHHHhhCCCceeeehhhHH
Confidence 788888888888888877666666655422 23333311 112334455566666666668887
Q ss_pred hhhhhhhhcCCEEEEeCCeEEeccccccCCC-CCcc----HHHHHhh---cch---HH-HHHHhhcCC------------
Q 017189 113 GGGAGVSIHGRFRVATENSVFAMPETALGLF-PDIG----ASYFLSR---LPG---FF-GEYVGLTGA------------ 168 (375)
Q Consensus 113 GgG~~Lala~D~ria~~~a~f~~pe~~~G~~-p~~g----~~~~l~r---l~g---~~-a~~l~ltG~------------ 168 (375)
+-|.-|..+. +++-+|++|..++=+. |-+| ++-..-+ +.- .. -.+.--||+
T Consensus 163 s~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd 237 (275)
T KOG0840|consen 163 SMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRD 237 (275)
T ss_pred hHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhccc
Confidence 7665444432 4555666666665553 3222 1111110 110 00 122223454
Q ss_pred -ccCHHHHHHcCccceecCC
Q 017189 169 -RLDGAEMRACGLATHFVPS 187 (375)
Q Consensus 169 -~i~A~eA~~~GLv~~vv~~ 187 (375)
.++|+||.++||||.|++.
T Consensus 238 ~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 238 RFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred ccCCHHHHHHhcchhhhhcC
Confidence 4899999999999999874
No 150
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=76.29 E-value=34 Score=31.62 Aligned_cols=144 Identities=8% Similarity=0.006 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCceEEEE--eeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEE
Q 017189 30 LNALSAQMISRLLELFQRYETDSNVKLLIL--KGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSIL 107 (375)
Q Consensus 30 ~Nal~~~~~~eL~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav 107 (375)
...+..+.--.|.+++.+.-.+..-|.||+ -..|..++-= .|+... ..++....+.+..-+...-|||+.|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grr---eEllGi----~~alAhla~a~a~AR~~GHpvI~Lv 112 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRR---EELLGI----NQALAHLAKAYALARLAGHPVIGLV 112 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchH---HHHhhH----HHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 467888877777777765544333344443 3333222210 111100 2334444555566677889999999
Q ss_pred ccccchhhh-hhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhcchHHHHHHhhcCCc--cCHHHHHHcCcccee
Q 017189 108 NGIVMGGGA-GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRLPGFFGEYVGLTGAR--LDGAEMRACGLATHF 184 (375)
Q Consensus 108 nG~a~GgG~-~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl~g~~a~~l~ltG~~--i~A~eA~~~GLv~~v 184 (375)
-|.|++||| .-.+.+|..||-+++ .+-..+-..+ .+..++.=..-.++.-|--. .+.+--.++|.++++
T Consensus 113 ~G~A~SGaFLA~GlqA~rl~AL~ga-------~i~vM~~~s~-ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l 184 (234)
T PF06833_consen 113 YGKAMSGAFLAHGLQANRLIALPGA-------MIHVMGKPSA-ARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDEL 184 (234)
T ss_pred ecccccHHHHHHHHHhcchhcCCCC-------eeecCChHHh-HHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHH
Confidence 999999997 688899988876643 3333322222 23333322223333333333 455666788999999
Q ss_pred cCCc
Q 017189 185 VPSS 188 (375)
Q Consensus 185 v~~~ 188 (375)
++.+
T Consensus 185 ~~~~ 188 (234)
T PF06833_consen 185 WDGD 188 (234)
T ss_pred hccc
Confidence 8743
No 151
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=75.20 E-value=18 Score=37.39 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=92.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCC
Q 017189 22 LTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYT 100 (375)
Q Consensus 22 itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 100 (375)
|.=|.|. ..-+|+.+-...-.+.++.++. .++-.|.|.-. ..|.-|.+-.. ....++..+++.++....
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI~~cd~-~~iPlv~L~d~-pGFm~G~~~E~--------~giik~Gakl~~A~aeat 397 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFIRLCDA-FNIPLVFLVDT-PGFMPGTDQEY--------GGIIKHGAKLLYAVAEAT 397 (526)
T ss_pred EEecCccccccccchHHHHHHHHHHHhhhc-cCCCeEEEeCC-CCCCCChhHHh--------ChHHHhhhHHHhhHhhcc
Confidence 4445554 4558999998888888866655 35666666533 44888876443 344566678889999999
Q ss_pred CcEEEEEccccchhhhhhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhh-cch--HH-HHHH---------hhcC
Q 017189 101 KPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSR-LPG--FF-GEYV---------GLTG 167 (375)
Q Consensus 101 kPvIAavnG~a~GgG~~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r-l~g--~~-a~~l---------~ltG 167 (375)
+|.|..|-|.++|||......-.+- .+-.|+.|..++|+.-+-|+...+.| .+. .. ..+. -..-
T Consensus 398 VPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~ 474 (526)
T COG4799 398 VPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEE 474 (526)
T ss_pred CCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Confidence 9999999999999985432221111 33445556666666544444433332 221 00 1000 0111
Q ss_pred CccCHHHHHHcCccceecCCccH
Q 017189 168 ARLDGAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 168 ~~i~A~eA~~~GLv~~vv~~~~l 190 (375)
+...+--|.+.|++|.|+++.+.
T Consensus 475 ~~~~p~~aa~r~~iD~vI~p~~t 497 (526)
T COG4799 475 QFSNPYYAAERGYIDAVIDPADT 497 (526)
T ss_pred hccchHHHHHhCCCCcccCHHHH
Confidence 22345556667777777776543
No 152
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=73.16 E-value=7.8 Score=37.37 Aligned_cols=80 Identities=11% Similarity=0.186 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhhcCC---CceEEEE-eeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcc
Q 017189 34 SAQMISRLLELFQRYETDS---NVKLLIL-KGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNG 109 (375)
Q Consensus 34 ~~~~~~eL~~~l~~~~~d~---~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG 109 (375)
......+|.++|+.+...+ .+-+||| +|.| .+.++... .-..+.++|..++.|||++| |
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~F---------N~e~varai~~~~~PvisaI-G 115 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAF---------NDEEVARAIAASPIPVISAI-G 115 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhccc---------ChHHHHHHHHhCCCCEEEec-C
Confidence 3455778888888887654 4666665 4433 23333222 12457889999999999987 4
Q ss_pred ccchhhhhhhhcCCEEEEeCCe
Q 017189 110 IVMGGGAGVSIHGRFRVATENS 131 (375)
Q Consensus 110 ~a~GgG~~Lala~D~ria~~~a 131 (375)
|-.=- .-.=+.||+|..|+.+
T Consensus 116 He~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 116 HETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred CCCCc-hHHHHHHHhhCCCHHH
Confidence 44322 2344667777777654
No 153
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=71.17 E-value=13 Score=35.32 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 41 LLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 41 L~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
+.++|..+++||+.++||+-|.- |.+-++ ...++... ....|||||.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEi-----GG~aEe-------------~AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEI-----GGPAEE-------------EAAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecC-----CCcHHH-------------HHHHHHHH-hccCCCEEEEEeccCC
Confidence 34788899999999999999972 111111 11223333 3345999999999875
No 154
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=70.50 E-value=11 Score=31.87 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017189 40 RLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIV 111 (375)
Q Consensus 40 eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a 111 (375)
.+.+.++.+.+||++++|++.-++ + | -+.+.+..++.... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~------d--------------~~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG------D--------------GRRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S---------------------HHHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC------C--------------HHHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 466778888889999999998765 1 0 12334455555555 99999998874
No 155
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=66.54 E-value=48 Score=33.58 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=95.4
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhC
Q 017189 21 ILTLNRPR-QLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATY 99 (375)
Q Consensus 21 ~itlnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~ 99 (375)
=|.-|+|+ ....|..+.-....+.++.+.+ ..+-.|.|...++ |..|.+.+... ..+....++.+....
T Consensus 352 gIvgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~~g--------IaK~gAklv~a~a~a 421 (536)
T KOG0540|consen 352 GIVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEAGG--------IAKHGAKLVYAVACA 421 (536)
T ss_pred EEeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhhhc--------hhhhhhhhhhhhhhc
Confidence 35566765 4456777777777777776655 4677777766655 99998876431 223345577777888
Q ss_pred CCcEEEEEccccchhhh---hhhhcCCEEEEeCCeEEeccccccCCCCCccHHHHHhhc-----chHHHHHHhhcCCccC
Q 017189 100 TKPQVSILNGIVMGGGA---GVSIHGRFRVATENSVFAMPETALGLFPDIGASYFLSRL-----PGFFGEYVGLTGARLD 171 (375)
Q Consensus 100 ~kPvIAavnG~a~GgG~---~Lala~D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~rl-----~g~~a~~l~ltG~~i~ 171 (375)
.+|-|..+.|.+.||-. +-.+.-|+.+|-++|++++-.. -++.-.+.+. ....+.+.=..|.++.
T Consensus 422 kvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~-------~~a~~Vi~q~~~e~a~~~~~~~~E~f~npy~ 494 (536)
T KOG0540|consen 422 KVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGG-------KQAANVIFQITLEKAVALKAPYIEKFGNPYY 494 (536)
T ss_pred cCceEEEEecCccCCcccccccccCCceeEEcccceeeeccc-------cchhhhhhhhhhhhhhhhcchHHHHhcCccH
Confidence 89999999999999654 4667788888888887664322 1222223322 2211111112266654
Q ss_pred HHHHHHcCccceecCCccH
Q 017189 172 GAEMRACGLATHFVPSSRL 190 (375)
Q Consensus 172 A~eA~~~GLv~~vv~~~~l 190 (375)
|...|++|.++++.+.
T Consensus 495 ---a~~Rg~~D~II~p~~t 510 (536)
T KOG0540|consen 495 ---AAARGWDDGIIDPSDT 510 (536)
T ss_pred ---HHHhhccccccChhHh
Confidence 3578999999998765
No 156
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.91 E-value=19 Score=38.09 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCceEEEEeeC-CCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 41 LLELFQRYETDSNVKLLILKGK-GRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 41 L~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
+.+.|+.+++||++++|++.|+ |. .| +.++ .+..++.. ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg-----~~----------e~~f----~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGG-----RD----------EYSL----VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCc-----hh----------HHHH----HHHHHHhc-CCCCEEEEeccCCC
Confidence 4666777778888888888876 41 00 0112 22223222 67999999999886
No 157
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=62.71 E-value=15 Score=37.15 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhh
Q 017189 36 QMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGG 115 (375)
Q Consensus 36 ~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG 115 (375)
....+|.++++.+++.+++.++|+-=. |+-++++-... -..+.++++.++.|||++| ||-.--
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRG------GGSiEDLW~FN---------dE~vaRAi~~s~iPvISAV-GHEtD~- 238 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARG------GGSIEDLWAFN---------DEIVARAIAASRIPVISAV-GHETDF- 238 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecC------cchHHHHhccC---------hHHHHHHHHhCCCCeEeec-ccCCCc-
Confidence 345677777777777666666665311 22333332221 1347889999999999988 333211
Q ss_pred hhhhhcCCEEEEeCCe
Q 017189 116 AGVSIHGRFRVATENS 131 (375)
Q Consensus 116 ~~Lala~D~ria~~~a 131 (375)
.-.=+.+|+|-+|+.+
T Consensus 239 tL~DfVAD~RApTPTa 254 (440)
T COG1570 239 TLADFVADLRAPTPTA 254 (440)
T ss_pred cHHHhhhhccCCCchH
Confidence 1123456777666643
No 158
>smart00250 PLEC Plectin repeat.
Probab=57.45 E-value=8.1 Score=24.77 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=17.3
Q ss_pred hcCCccCHHHHHHcCccce
Q 017189 165 LTGARLDGAEMRACGLATH 183 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~ 183 (375)
.||++++-.+|.+.||++.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999985
No 159
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=56.81 E-value=29 Score=33.67 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 41 LLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 41 L~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
+.+.|+.+.+||++++|++.+++. ++-. .+..+|. .. ....||||+.+-|..-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g-----G~~e------~~aa~fi-------~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG-----GTAE------EEAAEWI-------KN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC-----Cchh------HHHHHHH-------Hh-hcCCCcEEEEEecCCC
Confidence 456677777788888888887631 0000 0001121 21 2468999999998874
No 160
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.86 E-value=23 Score=35.77 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCceEEEE-eeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 34 SAQMISRLLELFQRYETDSNVKLLIL-KGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 34 ~~~~~~eL~~~l~~~~~d~~vr~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
......+|.++|..++... +-+||| +|.| -+.++... .-..+.++|..++.|||++| ||-.
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~F---------n~e~v~~ai~~~~~Pvis~I-GHE~ 235 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAF---------NDEAVARAIAASRIPVISAV-GHET 235 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhcc---------CcHHHHHHHHcCCCCEEEec-cCCC
Confidence 3445778888888877633 444444 4433 22333222 12457889999999999987 3332
Q ss_pred hhhhhhhhcCCEEEEeCCe
Q 017189 113 GGGAGVSIHGRFRVATENS 131 (375)
Q Consensus 113 GgG~~Lala~D~ria~~~a 131 (375)
=- .-.=+.||.|.+|+.+
T Consensus 236 D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 236 DF-TIADFVADLRAPTPTA 253 (438)
T ss_pred Cc-cHHHHhhhccCCChHH
Confidence 11 2344667888777754
No 161
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=55.72 E-value=24 Score=35.79 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCceEEEEe-eCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccc
Q 017189 34 SAQMISRLLELFQRYETDSNVKLLILK-GKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 34 ~~~~~~eL~~~l~~~~~d~~vr~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~ 112 (375)
..+...++.++++.++..+++-+|||. |.| -+.++... .-..+.++|..+|.|||++| ||-.
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~F---------n~e~~~rai~~~~~Pvis~i-GHe~ 230 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSF---------NDEKVARAIFLSKIPIISAV-GHET 230 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhc---------CcHHHHHHHHcCCCCEEEec-CcCC
Confidence 445678888888888776656666654 433 22333222 12357889999999999987 3332
Q ss_pred hhhhhhhhcCCEEEEeCCe
Q 017189 113 GGGAGVSIHGRFRVATENS 131 (375)
Q Consensus 113 GgG~~Lala~D~ria~~~a 131 (375)
-- .-.=+.+|.|.+|+.+
T Consensus 231 D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 231 DF-TISDFVADLRAPTPSA 248 (432)
T ss_pred Cc-cHHHHhhhccCCCcHH
Confidence 11 2234667888777654
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=49.80 E-value=37 Score=29.24 Aligned_cols=57 Identities=18% Similarity=0.084 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHH-----HhCCCcEEEEEccccch
Q 017189 40 RLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLM-----ATYTKPQVSILNGIVMG 113 (375)
Q Consensus 40 eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i-----~~~~kPvIAavnG~a~G 113 (375)
...++|..+.+||++++|++-+.++.=+. .+ ... .+...+ ....+|+|+.|-|-..-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~----~~----------~A~---~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC----ED----------PAA---GLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH----HH----------HHH---HHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch----HH----------HHH---HHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 45566777888999999999986531111 11 111 122222 34679999999998765
No 163
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=44.85 E-value=9.9 Score=25.42 Aligned_cols=19 Identities=37% Similarity=0.351 Sum_probs=16.5
Q ss_pred hcCCccCHHHHHHcCccce
Q 017189 165 LTGARLDGAEMRACGLATH 183 (375)
Q Consensus 165 ltG~~i~A~eA~~~GLv~~ 183 (375)
-||++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4899999999999999975
No 164
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=42.58 E-value=85 Score=24.35 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=36.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q 017189 10 QVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG 63 (375)
Q Consensus 10 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g 63 (375)
.+.++..+++.+|++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 477888999999999864 4555577777777766554567888887665
No 165
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=40.88 E-value=73 Score=30.66 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.2
Q ss_pred CCcEEEEEccccc
Q 017189 100 TKPQVSILNGIVM 112 (375)
Q Consensus 100 ~kPvIAavnG~a~ 112 (375)
.||||+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999988773
No 166
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=40.74 E-value=1.2e+02 Score=24.00 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=40.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCC--------ceEEEEeeCC
Q 017189 11 VLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSN--------VKLLILKGKG 63 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~--------vr~vVltg~g 63 (375)
+.++..+++.++.++.| |+-.....+.+.+..+..... ++.|||.-.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 56788999999999987 788889999999988887665 7899998776
No 167
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=40.12 E-value=34 Score=34.84 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEccccchhhhhh
Q 017189 39 SRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGV 118 (375)
Q Consensus 39 ~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a~GgG~~L 118 (375)
-.+.+.++.+.+|+++++|++..++- + +. +.+.+..++... .||||+..-|..- .|-..
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~~--------~-------~~----~~f~~aa~~a~~-~KPVv~~k~Grs~-~g~~a 247 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEGI--------K-------DG----RKFLKTAREISK-KKPIVVLKSGTSE-AGAKA 247 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecCC--------C-------CH----HHHHHHHHHHcC-CCCEEEEecCCCh-hhhhh
Confidence 35567777777888888888877640 0 00 123334444444 8999999998874 34333
Q ss_pred hhcCCEEEEeCCeEEeccccccCC
Q 017189 119 SIHGRFRVATENSVFAMPETALGL 142 (375)
Q Consensus 119 ala~D~ria~~~a~f~~pe~~~G~ 142 (375)
+...-=-++.++..|..-.-+.|+
T Consensus 248 a~sHtgalag~~~~~~a~~~~~Gv 271 (447)
T TIGR02717 248 ASSHTGALAGSDEAYDAAFKQAGV 271 (447)
T ss_pred hhhccccccChHHHHHHHHHHCCe
Confidence 322222233333333333334444
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=38.30 E-value=1.5e+02 Score=23.00 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=35.5
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCc
Q 017189 12 LEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAF 66 (375)
Q Consensus 12 ~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F 66 (375)
.++..+++.++.+..| ++-....++.+.+..+-..+..+.+||.-++-.|
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 4577899999999776 5666677777777665443457888887666333
No 169
>PRK06091 membrane protein FdrA; Validated
Probab=35.62 E-value=1.1e+02 Score=32.19 Aligned_cols=22 Identities=23% Similarity=0.242 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCcEEEEEccccc
Q 017189 91 ILNYLMATYTKPQVSILNGIVM 112 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~ 112 (375)
+++....++.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4445555669999999998654
No 170
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=33.78 E-value=1.1e+02 Score=29.10 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHh-CCCcEEEEEccccc
Q 017189 40 RLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT-YTKPQVSILNGIVM 112 (375)
Q Consensus 40 eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~-~~kPvIAavnG~a~ 112 (375)
.+.+.|+.+.+||++++|++..++. | |- . .+....+.. ..||||+..-|..-
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~----~-~~----------~------~~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG----G-SA----------E------EEAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC----C-ch----------H------HHHHHHHHhcCCCCEEEEEecCCC
Confidence 3455566666677777777766531 0 00 0 011122222 67999999988763
No 171
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=33.21 E-value=1.2e+02 Score=29.07 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.8
Q ss_pred CCCcEEEEEccccc
Q 017189 99 YTKPQVSILNGIVM 112 (375)
Q Consensus 99 ~~kPvIAavnG~a~ 112 (375)
..||||+..-|..-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999998854
No 172
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.36 E-value=2e+02 Score=27.36 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhH-hhcc----c-hh----hHHHHH
Q 017189 20 RILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAV-VRGI----N-EG----AKFFSK 88 (375)
Q Consensus 20 ~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~-~~~~----~-~~----~~~~~~ 88 (375)
-++.+|.. .|-++...+....+++.+.--.+.-++-||-|.. +.|.---|-... .+.. . .+ ..+.++
T Consensus 130 Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR 207 (329)
T COG3660 130 NILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR 207 (329)
T ss_pred ceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 35667764 3778889999999999988666677787877766 888765443321 1111 0 11 112222
Q ss_pred HHHHHHHH-H-hCCCcEEEEEccccch--hhhhhhhcCCEEEEeCCeE
Q 017189 89 EFILNYLM-A-TYTKPQVSILNGIVMG--GGAGVSIHGRFRVATENSV 132 (375)
Q Consensus 89 ~~~l~~~i-~-~~~kPvIAavnG~a~G--gG~~Lala~D~ria~~~a~ 132 (375)
.-+....+ . +++--.+...|+--.| --+.+..++|++|++.++.
T Consensus 208 Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 208 TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 22222222 2 2455557778877444 4578899999999998874
No 173
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=25.83 E-value=81 Score=31.71 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--eeCC-CCccccCCchhHhhccc-----hhhHHHHHHH
Q 017189 19 VRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLIL--KGKG-RAFCAGGDVAAVVRGIN-----EGAKFFSKEF 90 (375)
Q Consensus 19 v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~~~~~~-----~~~~~~~~~~ 90 (375)
|++|.| +.|+.....+|..++..+..+. ++++|| ++.+ +......++..+.-... ..+.-....+
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 888876 4477778888999999999876 888886 5665 55566666554322110 0000000000
Q ss_pred HHHHHHHhCCCcEEEEEccccchhh
Q 017189 91 ILNYLMATYTKPQVSILNGIVMGGG 115 (375)
Q Consensus 91 ~l~~~i~~~~kPvIAavnG~a~GgG 115 (375)
.-...-...++|+|..||+...-++
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAs 302 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASAS 302 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHH
Confidence 0000001467999999998776554
No 174
>PRK14053 methyltransferase; Provisional
Probab=24.51 E-value=94 Score=27.60 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=44.9
Q ss_pred EEEeCCEEEEEEcCCC---CCCCCCHHHHH---HHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhc
Q 017189 13 EEETSFVRILTLNRPR---QLNALSAQMIS---RLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRG 78 (375)
Q Consensus 13 ~~~~~~v~~itlnrp~---~~Nal~~~~~~---eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~ 78 (375)
-+.+..|+.+||...- ..-|+...... .+...+..+-.||++|.+||.|.. +..-+|.-|..++..
T Consensus 18 G~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~N 90 (194)
T PRK14053 18 GNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHAN 90 (194)
T ss_pred CCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHHc
Confidence 3445688999987532 11233222222 366777778889999999999987 778888777777654
No 175
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=23.46 E-value=1.9e+02 Score=21.52 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=29.2
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q 017189 13 EEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG 63 (375)
Q Consensus 13 ~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g 63 (375)
....+++.++.+..+ ++..-...+.+.+.....++ .+.|+|...+
T Consensus 3 ~~~~~~~~ii~l~G~-----l~~~~~~~~~~~~~~~~~~~-~~~viid~~~ 47 (99)
T cd07043 3 VEERGGVLVVRLSGE-----LDAATAPELREALEELLAEG-PRRLVLDLSG 47 (99)
T ss_pred eEEECCEEEEEEece-----ecccchHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 455778888888764 34444556666666555443 6888887766
No 176
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=23.12 E-value=1.3e+02 Score=23.95 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHHhhcCCccCHHHHHHcCccceecCCccHHHHHHHHHhcCCCChHHHHHHHHHhccC----CCCCcchhhhHHHHHHH
Q 017189 160 GEYVGLTGARLDGAEMRACGLATHFVPSSRLALLEEALYKVNSSDPAVISAVIDKFSLE----PYLKDHSAYHWMDVIDK 235 (375)
Q Consensus 160 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~ 235 (375)
|..|+..|+...++=..+ ++++++..+..++.++..-+++.+...+++|... ...-......-...+.+
T Consensus 12 AilLl~Lgee~Aa~vlk~-------l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~ 84 (108)
T PF14842_consen 12 AILLLALGEEAAAEVLKH-------LDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEK 84 (108)
T ss_dssp HHHHHHS-HHHHHHHHHH-------S-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHH
T ss_pred HHHHHHHCHHHHHHHHcc-------CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHH
Confidence 566666666555544333 4677788888889888888888888888887552 11112222233456777
Q ss_pred HhCcCCHHHHHHHHhh
Q 017189 236 CFSRRTVEEILSALES 251 (375)
Q Consensus 236 ~f~~~~~~ei~~~L~~ 251 (375)
.|+.+..++|++.+..
T Consensus 85 alg~~~a~~il~~~~~ 100 (108)
T PF14842_consen 85 ALGEEKAKEILDRLEQ 100 (108)
T ss_dssp HS---HHHHH------
T ss_pred HCCHHHHHHHHHHHhc
Confidence 8888888887776654
No 177
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=22.76 E-value=2.4e+02 Score=25.87 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=37.8
Q ss_pred CCCCccHHHHHhhcchH-H-HHHHhhcC--CccCHHHHHHcCccceecCCccHHHHHHHHHh
Q 017189 142 LFPDIGASYFLSRLPGF-F-GEYVGLTG--ARLDGAEMRACGLATHFVPSSRLALLEEALYK 199 (375)
Q Consensus 142 ~~p~~g~~~~l~rl~g~-~-a~~l~ltG--~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~ 199 (375)
+.|++-|..+|+.+... . ..-++.|. +.=+-++|++.|.+|+++.|=.++.+.++|.+
T Consensus 55 YmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~ 116 (224)
T COG4565 55 YMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTR 116 (224)
T ss_pred ccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHH
Confidence 35777777777766541 1 12222222 12356899999999999999777777777754
No 178
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=22.22 E-value=3e+02 Score=21.15 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHH-HHhCCCcEEEEEcccc
Q 017189 38 ISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYL-MATYTKPQVSILNGIV 111 (375)
Q Consensus 38 ~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~-i~~~~kPvIAavnG~a 111 (375)
-+++.++|..+-.++++.+|++|-. ....+.+.... ......|+|..+=+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~----------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITED----------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHH----------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHH----------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 4677888888888889999998842 11222222233 3567899999996543
No 179
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=22.05 E-value=1e+02 Score=27.15 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=41.6
Q ss_pred EEEEeCCEEEEEEcCCCCCC------CCCHHHH---HHHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhh
Q 017189 12 LEEETSFVRILTLNRPRQLN------ALSAQMI---SRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVR 77 (375)
Q Consensus 12 ~~~~~~~v~~itlnrp~~~N------al~~~~~---~eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~ 77 (375)
.-+.+..|+.+||......- |+..... -.+...+..+-.||++|.+||.|.- +..-+|.-|..++.
T Consensus 17 vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh~ 92 (176)
T PF04208_consen 17 VGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALHE 92 (176)
T ss_pred ECCCCCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHHH
Confidence 33445678999987643211 1111111 1366778888889999999999987 66666655555543
No 180
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=22.00 E-value=3.1e+02 Score=26.42 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEeeCCCCccccCCchhHhhccchhhHHHHHHHHHHHHHHhCCCcEEEEEcccc
Q 017189 32 ALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIV 111 (375)
Q Consensus 32 al~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAavnG~a 111 (375)
--+.+-+..+..-++++.. ...-++||||+.-.- .++.+ ..++..+.+++.-+.+..+|++. .|
T Consensus 79 ~~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp~e~---~~fed--------v~YW~El~~i~~w~~~~~~s~Lg----IC 142 (302)
T PRK05368 79 NTPAEHLENFYCTFEDIKD-EKFDGLIITGAPVEQ---LPFED--------VDYWDELKEILDWAKTHVTSTLF----IC 142 (302)
T ss_pred CCCHHHHHHhccCHHHhcc-CCCCEEEEcCCCCCC---ccCCC--------CchHHHHHHHHHHHHHcCCCEEE----Ec
Confidence 3567888999999998864 568999999986111 11111 23455555666656666777775 56
Q ss_pred chhhhhhhhc
Q 017189 112 MGGGAGVSIH 121 (375)
Q Consensus 112 ~GgG~~Lala 121 (375)
.|..+.+-..
T Consensus 143 wGaQa~a~al 152 (302)
T PRK05368 143 WAAQAALYHL 152 (302)
T ss_pred HHHHHHHHHc
Confidence 6655544333
No 181
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=21.69 E-value=61 Score=32.32 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=51.0
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEE--eeCC-CCccccCCchhHhhccch-----hhHHHHH
Q 017189 17 SFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLIL--KGKG-RAFCAGGDVAAVVRGINE-----GAKFFSK 88 (375)
Q Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~~~~~~~-----~~~~~~~ 88 (375)
++|++|.+ +.|+.....++.+++..+... +++.+|| ++.+ +.+..+.++..+.-.... ...-...
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 36788877 446667788999999998765 4777776 5554 333333333332111000 0000000
Q ss_pred HHHHHHH-HHhCCCcEEEEEccccchhhhhhh
Q 017189 89 EFILNYL-MATYTKPQVSILNGIVMGGGAGVS 119 (375)
Q Consensus 89 ~~~l~~~-i~~~~kPvIAavnG~a~GgG~~La 119 (375)
.+..... .....+|++..+|+.+..++=.++
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a 298 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILA 298 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHH
Confidence 0000000 112468999999998876653333
No 182
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=21.55 E-value=1.1e+02 Score=28.00 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred EEEeCCEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhh
Q 017189 13 EEETSFVRILTLNRPRQ-------LNALSAQMIS---RLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVR 77 (375)
Q Consensus 13 ~~~~~~v~~itlnrp~~-------~Nal~~~~~~---eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~ 77 (375)
-+.+..|+.+||..... .-|+...... .+...+..+-.||++|.+||.|.. +..-+|.-|..++.
T Consensus 21 Gd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~~ 96 (225)
T PRK00964 21 GDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALHE 96 (225)
T ss_pred CCCCCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 34456899999986431 1223222222 367778888889999999999987 66777766666654
No 183
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=21.13 E-value=2.9e+02 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHh--hcCCCceEEEEeeCC
Q 017189 19 VRILTLNRPRQLNAL--S----------AQMISRLLELFQRY--ETDSNVKLLILKGKG 63 (375)
Q Consensus 19 v~~itlnrp~~~Nal--~----------~~~~~eL~~~l~~~--~~d~~vr~vVltg~g 63 (375)
+..|+.+-|.|...- + ...+.++.+.+... ...+++++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 355777778876542 2 25666777777766 556789999999987
No 184
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=21.11 E-value=1.2e+02 Score=27.90 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=45.6
Q ss_pred EEEEEeCCEEEEEEcCCCC-------CCCCCHHHHH---HHHHHHHHhhcCCCceEEEEeeCC-CCccccCCchhHhhc
Q 017189 11 VLEEETSFVRILTLNRPRQ-------LNALSAQMIS---RLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRG 78 (375)
Q Consensus 11 v~~~~~~~v~~itlnrp~~-------~Nal~~~~~~---eL~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~ 78 (375)
+.-+.+..|+.+||..... .-|+...... .+...+..+-.||++|.+|+.|.. +..-+|.-|..++..
T Consensus 19 ~vGd~~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TENlGIEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh~N 97 (238)
T TIGR01111 19 VVGDPESPVLVVTLGSHIEEQIILDAGAAIAGPCKTENLGIEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALHEN 97 (238)
T ss_pred EecCCCCceEEEEccccccccchhhcCceeeccccccccCHHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHHHc
Confidence 3344466899999976431 1122222222 366777788889999999999987 677788777776553
Done!