Query 017191
Match_columns 375
No_of_seqs 167 out of 1802
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 6.5E-11 2.2E-15 94.6 5.2 71 252-322 34-105 (137)
2 3b5d_A Multidrug transporter E 98.7 4.1E-08 1.4E-12 75.6 6.7 70 253-322 35-105 (110)
3 3b5d_A Multidrug transporter E 98.6 7.3E-07 2.5E-11 68.5 11.8 69 78-152 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.5 2.4E-07 8.2E-12 73.8 8.5 70 78-153 34-104 (137)
5 3b9w_A Ammonium transporter fa 65.5 87 0.003 29.1 15.8 72 74-151 177-250 (407)
6 3rko_J NADH-quinone oxidoreduc 60.9 67 0.0023 26.2 12.3 33 289-321 127-161 (184)
7 1pw4_A Glycerol-3-phosphate tr 51.1 1.4E+02 0.0048 27.0 25.1 12 264-275 367-378 (451)
8 3l1l_A Arginine/agmatine antip 32.8 44 0.0015 30.9 4.8 44 282-325 388-431 (445)
9 2l2t_A Receptor tyrosine-prote 31.0 22 0.00076 21.6 1.5 9 315-323 30-38 (44)
10 2zxe_G FXYD10, phospholemman-l 21.3 35 0.0012 23.1 1.2 18 305-322 25-42 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.10 E-value=6.5e-11 Score=94.58 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=54.2
Q ss_pred hhhhhhhhHhHHHHHHHhccCCcchhhhh-hhHHHHHHHHHHHHHhcccccchhhhhHHHHHhhhhheeecc
Q 017191 252 FSGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTGSLVGAIGVILGLYAVLWGK 322 (375)
Q Consensus 252 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~iG~~lil~g~~l~~~~~ 322 (375)
.+++++++++|++|.+++|+.+++.+..+ ..+.|+++.+++++++||++++.+++|+++|++|+++..+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35667899999999999999999999888 899999999999999999999999999999999999986543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.66 E-value=4.1e-08 Score=75.58 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=64.2
Q ss_pred hhhhhhhHhHHHHHHHhccCCcchhhhh-hhHHHHHHHHHHHHHhcccccchhhhhHHHHHhhhhheeecc
Q 017191 253 SGAIGSGVSFCVQAWCISKRGPLFSAMF-NPLCTVIVTILAALLLHEEIYTGSLVGAIGVILGLYAVLWGK 322 (375)
Q Consensus 253 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~iG~~lil~g~~l~~~~~ 322 (375)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||+++..+++|++++++|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556788999999999999999999888 899999999999999999999999999999999999986543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.58 E-value=7.3e-07 Score=68.52 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHhhh-hhhhHHHHHHHHHHhhccccCCCccchhhhhhhHHHHhhhHhHHhh
Q 017191 78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMAL 152 (375)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~ 152 (375)
+.+++.+.+++.++.+++++.|.+.+..+ ..+.|+++.+++++++||++++. +++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666668999999999999999999988 79999999999999999999999 99999999999999874
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=2.4e-07 Score=73.84 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhHhhh-hhhhHHHHHHHHHHhhccccCCCccchhhhhhhHHHHhhhHhHHhhh
Q 017191 78 FIALLGVTINQNTYFEGLYLASSSMASAM-GNLIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISMALL 153 (375)
Q Consensus 78 ~~g~~~~~~~~~~~~~al~~~~~~~a~~l-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~ 153 (375)
+.+++.+++++.++++++++.+++.+..+ .++.|++++++++++++|++++. +++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 56666778999999999999999999998 89999999999999999999999 999999999999999753
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=65.48 E-value=87 Score=29.06 Aligned_cols=72 Identities=4% Similarity=-0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhHhhhhhhhHHHHHHHHHHhhcc--ccCCCccchhhhhhhHHHHhhhHhHHh
Q 017191 74 SLIFFIALLGVTINQNTYFEGLYLASSSMASAMGNLIPAITFVMASIVGLE--KIDLGSVRSVAKILGTIFCVGGAISMA 151 (375)
Q Consensus 74 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~~~pi~~~ll~~l~~~e--~~~~~~~~~~~~~~g~~l~~~Gv~l~~ 151 (375)
..+..+|.+..-.++..|+-++.......-.+++...-.-...+++++..+ +-.+. ...++.=+.++-++.+
T Consensus 177 ~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~------~~~~~~nG~LAGLVAI 250 (407)
T 3b9w_A 177 DRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA------SIVDMANAALAGGVAI 250 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHhhhhhhhee
Confidence 344455555547788889988543222222233333333334444443322 12233 4445555544444444
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=60.89 E-value=67 Score=26.20 Aligned_cols=33 Identities=9% Similarity=-0.031 Sum_probs=24.0
Q ss_pred HHHHHHHhcccccchhhhhHHHHHh--hhhheeec
Q 017191 289 TILAALLLHEEIYTGSLVGAIGVIL--GLYAVLWG 321 (375)
Q Consensus 289 ~~~~~l~~~e~~~~~~~iG~~lil~--g~~l~~~~ 321 (375)
--+|..++++-.-+.++.+..+.++ |.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888899999999999888753 54444443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=51.12 E-value=1.4e+02 Score=26.95 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=7.0
Q ss_pred HHHHHhccCCcc
Q 017191 264 VQAWCISKRGPL 275 (375)
Q Consensus 264 ~~~~a~~~~~~~ 275 (375)
.+.+..+..++.
T Consensus 367 ~~~~~~~~~~~~ 378 (451)
T 1pw4_A 367 IGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTSCTT
T ss_pred HHHHHHHHhchh
Confidence 345566666654
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=32.76 E-value=44 Score=30.95 Aligned_cols=44 Identities=5% Similarity=-0.121 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhcccccchhhhhHHHHHhhhhheeeccccc
Q 017191 282 PLCTVIVTILAALLLHEEIYTGSLVGAIGVILGLYAVLWGKAKD 325 (375)
Q Consensus 282 ~~~pv~~~~~~~l~~~e~~~~~~~iG~~lil~g~~l~~~~~~~~ 325 (375)
..-++++.++..+..-..-....+.|..+++.|+.++...++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444454444433222222234567888888887776655443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=31.01 E-value=22 Score=21.57 Aligned_cols=9 Identities=11% Similarity=0.088 Sum_probs=3.4
Q ss_pred hhheeeccc
Q 017191 315 LYAVLWGKA 323 (375)
Q Consensus 315 ~~l~~~~~~ 323 (375)
.+++.++++
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 333333333
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.27 E-value=35 Score=23.07 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=11.4
Q ss_pred hhhHHHHHhhhhheeecc
Q 017191 305 LVGAIGVILGLYAVLWGK 322 (375)
Q Consensus 305 ~iG~~lil~g~~l~~~~~ 322 (375)
++++++.+.|++++..+|
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 345666677777776654
Done!