Query 017191
Match_columns 375
No_of_seqs 167 out of 1802
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 10:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 52.7 61 0.0044 27.0 23.6 26 251-276 351-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 30.6 49 0.0036 25.7 6.3 29 286-314 95-123 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 30.0 1.4E+02 0.01 24.5 12.7 33 190-223 69-101 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 17.2 59 0.0043 15.5 3.1 18 180-197 2-19 (27)
5 d1q90r_ f.23.12.1 (R:) ISP sub 12.4 1.1E+02 0.0083 16.4 3.3 29 66-94 5-33 (39)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.9 3E+02 0.022 21.4 6.8 36 109-150 33-68 (248)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 6.2 1.5E+02 0.011 22.0 2.9 28 287-314 78-105 (199)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 5.6 7.1E+02 0.052 20.3 20.7 31 71-102 194-224 (383)
9 d1xioa_ f.13.1.1 (A:) Sensory 3.4 8E+02 0.059 17.9 19.1 18 107-124 77-94 (226)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.1 9.3E+02 0.068 18.2 9.1 40 68-108 51-90 (248)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=52.73 E-value=61 Score=27.00 Aligned_cols=26 Identities=8% Similarity=-0.021 Sum_probs=12.3
Q ss_pred HhhhhhhhhHhHHHHHHHhccCCcch
Q 017191 251 FFSGAIGSGVSFCVQAWCISKRGPLF 276 (375)
Q Consensus 251 ~~~g~~~~~~~~~~~~~a~~~~~~~~ 276 (375)
...|+.........+.+..+..+...
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 33344333334444555666666544
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=30.61 E-value=49 Score=25.67 Aligned_cols=29 Identities=28% Similarity=0.028 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcccccchhhhhHHHHHhh
Q 017191 286 VIVTILAALLLHEEIYTGSLVGAIGVILG 314 (375)
Q Consensus 286 v~~~~~~~l~~~e~~~~~~~iG~~lil~g 314 (375)
+.+.+.+..+.+..++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34445566678889998888887775553
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=29.99 E-value=1.4e+02 Score=24.48 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhCCcHHHHHHHHHHHHHH
Q 017191 190 ACCWSLWLILQVPVSASYPDHLSLSAWMCFLATL 223 (375)
Q Consensus 190 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i 223 (375)
.+.+++......++..+.. .-...........+
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 3444455555555555553 33333333333333
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.21 E-value=59 Score=15.53 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017191 180 LLGCLFLFASACCWSLWL 197 (375)
Q Consensus 180 ~~G~~~~l~a~~~~a~~~ 197 (375)
.+|.+..-+++++||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357778888888888886
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.37 E-value=1.1e+02 Score=16.42 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017191 66 SSMGLRSFSLIFFIALLGVTINQNTYFEG 94 (375)
Q Consensus 66 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 94 (375)
|...+|+..-++..|.+........+=++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~ 33 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYG 33 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcccee
Confidence 55678888888888877755554444433
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.86 E-value=3e+02 Score=21.37 Aligned_cols=36 Identities=8% Similarity=-0.133 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhhccccCCCccchhhhhhhHHHHhhhHhHH
Q 017191 109 LIPAITFVMASIVGLEKIDLGSVRSVAKILGTIFCVGGAISM 150 (375)
Q Consensus 109 ~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~ 150 (375)
..-+.+.++.++++.+|.-++ +++-=.+.+..++.+
T Consensus 33 ~~~~~~~~~~~vy~s~r~~p~------kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 33 TTLILSSAGLYIFANRKAYAW------RYVYPGMAGMGLFVL 68 (248)
T ss_dssp HHHHHHHHHHHHHSSSCCTTH------HHHHHHHHHHHHHTH
T ss_pred HHHHHHHheEEEEEccCccce------ehhhhHHHHHHHHHH
Confidence 344566667777788887777 776555544444433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=1.5e+02 Score=22.03 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcccccchhhhhHHHHHhh
Q 017191 287 IVTILAALLLHEEIYTGSLVGAIGVILG 314 (375)
Q Consensus 287 ~~~~~~~l~~~e~~~~~~~iG~~lil~g 314 (375)
...+....++|..++.....+..+.++.
T Consensus 78 ~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 78 LGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3333344556777777666666655544
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.55 E-value=7.1e+02 Score=20.32 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 017191 71 RSFSLIFFIALLGVTINQNTYFEGLYLASSSM 102 (375)
Q Consensus 71 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 102 (375)
..... ..+|.+....++..++-+-.......
T Consensus 194 ~~~~~-~~lG~~iLw~gW~gFN~gs~~~~~~~ 224 (383)
T d1u7ga_ 194 HNLPM-VFTGTAILYIGWFGFNAGSAGTANEI 224 (383)
T ss_dssp GGHHH-HHHHHHHHHHHHHHHHHGGGSSSSHH
T ss_pred CChhh-hhHHHHHHHHHHHHhccccccccchH
Confidence 33433 44455554778888887776654433
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=3.41 E-value=8e+02 Score=17.95 Aligned_cols=18 Identities=6% Similarity=-0.138 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHhhcc
Q 017191 107 GNLIPAITFVMASIVGLE 124 (375)
Q Consensus 107 ~~~~pi~~~ll~~l~~~e 124 (375)
.-+.|+....+..+...+
T Consensus 77 ~lTtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 77 MVTTPLLLLSLSWTAMQF 94 (226)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHcccHHHHHHHHHHHHh
Confidence 457898888887765443
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.12 E-value=9.3e+02 Score=18.16 Aligned_cols=40 Identities=8% Similarity=-0.190 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhhhhh
Q 017191 68 MGLRSFSLIFFIALLGVTINQNTYFEGLYLASSSMASAMGN 108 (375)
Q Consensus 68 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~l~~ 108 (375)
.++|....-++.-+.. .+....|...+.+++=+..-.+..
T Consensus 51 ~p~kyi~PG~~~l~~F-vi~Pi~yT~~iaFTNy~tgh~ltk 90 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGLF-VLFPLVCTIAIAFTNYSSTNQLTF 90 (248)
T ss_dssp TTHHHHHHHHHHHHHH-THHHHHHHHHGGGBCCSSTTCBCH
T ss_pred cceehhhhHHHHHHHH-HHHhheeEEEEEEEEcCCCccccH
Confidence 3566555444333333 677778888887776555444443
Done!