Citrus Sinensis ID: 017193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.984 | 0.738 | 0.548 | 7e-99 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.885 | 0.605 | 0.362 | 4e-53 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.893 | 0.611 | 0.357 | 1e-52 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.893 | 0.611 | 0.357 | 1e-52 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.893 | 0.611 | 0.357 | 1e-52 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.904 | 0.651 | 0.349 | 8e-50 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.898 | 0.614 | 0.346 | 1e-48 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.893 | 0.611 | 0.352 | 1e-48 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | no | 0.917 | 0.679 | 0.303 | 4e-41 | |
| Q6PDF3 | 494 | Putative transporter SVOP | no | no | 0.92 | 0.698 | 0.297 | 1e-37 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (925), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 211/385 (54%), Positives = 267/385 (69%), Gaps = 16/385 (4%)
Query: 5 VAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGT 64
VAG LSAFS NY+ L+ LR LVG+GLG GPV SW+LEFIPA +RG MVV S FWT+GT
Sbjct: 102 VAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGT 161
Query: 65 IFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
IFEA+LAW+VMPRL WRWLLA SSVPS +LL Y E+P+YL G+ A+A +LEK+
Sbjct: 162 IFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKI 221
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIP-EHTPLLSS--------------TVNKSGSSS 169
A+ N T LP G+L S+ +E IP E+T LL + +K S
Sbjct: 222 ARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFS 281
Query: 170 FLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY 229
L LLS L++ TLLLW +FFGN+F YYGV+LLT+ELN+ RC T L ++ D + Y
Sbjct: 282 LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-Y 340
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289
+VFI S AE PGLL+SA +VDR+GRK SMA M IFLLPLL+HQ +TTVLLFG
Sbjct: 341 RDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGG 400
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349
R+ + F V +YAPE+YPT++R TG G+ S+VGRIGG++CPLV+VGLV GCHQT A+
Sbjct: 401 RICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVL 460
Query: 350 LLAVVIVLSIVCILLFPFETKGKRI 374
L VVI++S +C+ LFPFET G+ +
Sbjct: 461 LFEVVILVSGICVCLFPFETSGRDL 485
|
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 203/386 (52%), Gaps = 54/386 (13%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P +R +++I FW LGT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVP--SFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS++P FA+L + PE+ +Y +G A L+++
Sbjct: 224 EVLLAIFVMPTLGWRWLLILSALPLMLFAILCFW--LPESARYEVLSGNQEKALATLKRI 281
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLL 184
A NG +P G L+ + L S + TTLL
Sbjct: 282 ATENGAPMPLGKLI----------------------VSRQEDRGKIRDLFSPQFRCTTLL 319
Query: 185 LWFLFFGNSFVYYGVILLTSEL----------NSEEARCGSTLLLLEH--AQDASLYVNV 232
LWF++F N+F YYG++LLT+EL N +A L E+ +D Y ++
Sbjct: 320 LWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVED---YTDL 376
Query: 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMF 292
T+L+E PGLL++ I+DRVGRK +MAI I+ L L + TV LF AR F
Sbjct: 377 LWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAF 436
Query: 293 ANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLA 352
+G F A VY PEVYPT+ RA G G S + R+G ++ P ++ ++ ++I+L
Sbjct: 437 ISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML-----ESSIYL-- 489
Query: 353 VVIVLSIVCIL------LFPFETKGK 372
V+V S C+L P ETKG+
Sbjct: 490 TVLVYSGCCVLAAVASCFLPIETKGR 515
|
Xenopus laevis (taxid: 8355) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 206/383 (53%), Gaps = 48/383 (12%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVP--SFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR-TTL 183
A NG +P G L+ +++ + L T R TTL
Sbjct: 282 ATENGAPMPLGKLI-----------------------ISRQEDRGKMRDLFTPHFRWTTL 318
Query: 184 LLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYV 230
LLWF++F N+F YYG++LLT+EL + EA+C L E+ + Y+
Sbjct: 319 LLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YM 374
Query: 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGAR 290
++ T+L+E PG+L++ I+DR+GRK +MA+ ++ L L + T+LLF AR
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIAR 434
Query: 291 MFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIF 349
F +G F A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T A++
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVY 494
Query: 350 LLAVVIVLSIVCILLFPFETKGK 372
++ C L P ETKG+
Sbjct: 495 SGCCLLAALASCFL--PIETKGR 515
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Homo sapiens (taxid: 9606) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 206/383 (53%), Gaps = 48/383 (12%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVP--SFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR-TTL 183
A NG +P G L+ +++ + L T R TTL
Sbjct: 282 ATENGAPMPLGKLI-----------------------ISRQEDRGKMRDLFTPHFRWTTL 318
Query: 184 LLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYV 230
LLWF++F N+F YYG++LLT+EL + EA+C L E+ + Y+
Sbjct: 319 LLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YM 374
Query: 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGAR 290
++ T+L+E PG+L++ I+DR+GRK +MA+ ++ L L + T+LLF AR
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIAR 434
Query: 291 MFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIF 349
F +G F A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T A++
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVY 494
Query: 350 LLAVVIVLSIVCILLFPFETKGK 372
++ C L P ETKG+
Sbjct: 495 SGCCLLAALASCFL--PIETKGR 515
|
Pongo abelii (taxid: 9601) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 206/383 (53%), Gaps = 48/383 (12%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVP--SFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR-TTL 183
A NG +P G L+ +++ + L T R TTL
Sbjct: 282 ATENGAPMPLGKLI-----------------------ISRQEDRGKMRDLFTPHFRWTTL 318
Query: 184 LLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYV 230
LLWF++F N+F YYG++LLT+EL + EA+C L E+ + Y+
Sbjct: 319 LLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCS---LACEYLSEED-YM 374
Query: 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGAR 290
++ T+L+E PG+L++ I+DR+GRK +MA+ ++ L L + T+LLF AR
Sbjct: 375 DLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIAR 434
Query: 291 MFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIF 349
F +G F A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T A++
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVY 494
Query: 350 LLAVVIVLSIVCILLFPFETKGK 372
++ C L P ETKG+
Sbjct: 495 SGCCLLAALASCFL--PIETKGR 515
|
Bos taurus (taxid: 9913) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 205/395 (51%), Gaps = 56/395 (14%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++A + G++S S ++ L+ RGL G G+G P ++ + EF+P + R +V+I +FW
Sbjct: 157 LVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFW 216
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVP--SFAVLLLYGLAPETPKYLCTAGKMADAA 118
+G +FEA LA+ VM WR L+ LSS+P FAV + PE+ ++ +G A
Sbjct: 217 AIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFW--LPESARFDMASGHPERAL 274
Query: 119 HVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTEL 178
L+ A+ N LP+G LVS A + I LLS +L
Sbjct: 275 ETLQAAARMNRVQLPTGRLVSSTKAGSESRGDIAN-------------------LLSPDL 315
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLL----LLEHAQ--DASLYVNV 232
+TT+LLW ++ +F YYG++L T+ L C L +E Q S Y ++
Sbjct: 316 RKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDL 375
Query: 233 FITSLAELPGLLLSAVIVDRVGRKISM----AIMSILTFI--FLLPLLTHQPVTLTTVLL 286
T+LAE PGL+++ +I++ GRK +M A+ +I TF+ F L T TVL+
Sbjct: 376 LSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFT------VTVLI 429
Query: 287 FGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLV-------SVGLV 339
F AR F +G F A VY PEVYPT+LRA G G SA+ RIG +V P + S+ L
Sbjct: 430 FVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLP 489
Query: 340 TGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRI 374
G + TAAI L ++ L P ETKG+++
Sbjct: 490 IGIYGTAAI--------LGLIASLSLPIETKGRQM 516
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 200/381 (52%), Gaps = 44/381 (11%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQ 126
E LA VMP L WRWLL LS+ P +L PE+ +Y +G A L+++A
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIAT 283
Query: 127 RNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR-TTLLL 185
NG +P G L+ +++ + L T R TTLLL
Sbjct: 284 ENGAPMPLGKLI-----------------------ISRQEDRGKMRDLFTPHFRWTTLLL 320
Query: 186 WFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNV 232
WF++F N+F YYG++LLT+EL + EA+C L Y+++
Sbjct: 321 WFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED----YMDL 376
Query: 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMF 292
T+L+E PG+L++ ++DR+GRK +MA+ I+ + L L + T+LLF AR F
Sbjct: 377 LWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAF 436
Query: 293 ANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIFLL 351
+G F A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T A++
Sbjct: 437 ISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSG 496
Query: 352 AVVIVLSIVCILLFPFETKGK 372
++ C L P ETKG+
Sbjct: 497 CCLLAGVASCFL--PIETKGR 515
|
Mus musculus (taxid: 10090) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 205/383 (53%), Gaps = 48/383 (12%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+ P FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR-TTL 183
A NG +P G L+ +++ + L T R TTL
Sbjct: 282 ATENGAPMPLGKLI-----------------------ISRQEDRGKMRDLFTPHFRWTTL 318
Query: 184 LLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYV 230
LLWF++F N+F YYG++LLT+EL + EA+C L E+ Y+
Sbjct: 319 LLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCS---LACEYLSKED-YM 374
Query: 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGAR 290
++ T+L+E PG+L++ ++DR+GRK +MA+ ++ + L L + T+LLF AR
Sbjct: 375 DLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIAR 434
Query: 291 MFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIF 349
F +G F A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T A++
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVY 494
Query: 350 LLAVVIVLSIVCILLFPFETKGK 372
++ C L P ETKG+
Sbjct: 495 SGCCLLAALASCFL--PIETKGR 515
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 195/386 (50%), Gaps = 42/386 (10%)
Query: 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTL 62
AS L++FS +Y + LR +VG G+ + EFIPA R L+ + S FW +
Sbjct: 141 ASYFSFLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMM 200
Query: 63 GTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLE 122
G+I L V+P + WRW++ S +PS ++ L+ PE+ ++ +AG + A L+
Sbjct: 201 GSILIIVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLK 260
Query: 123 KMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTT 182
++A+ N LP G L E V + G++ + L+S+ RT+
Sbjct: 261 RIAKMNNGVLPEGELREPE--------------------VTERGNA--VTLISSAFRRTS 298
Query: 183 LLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLL---LEHAQDASL----------Y 229
LLLW+ +F SF YYG +L +SEL + C + L ++H Q+ +L Y
Sbjct: 299 LLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDY 358
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289
+ I+ L E+ + L+ ++++ VGRK SM I+ +L+ F + + + T+LLF
Sbjct: 359 QTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLL 418
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349
R + F V +Y EVYPTS+R+ G G ++ RIGGM+ P ++ L++ + I
Sbjct: 419 RSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMS----KSVIL 474
Query: 350 LLAVVIVLSIVC---ILLFPFETKGK 372
L+ I+C + P ET+G+
Sbjct: 475 ALSPFATACIICAIGVFFLPIETRGR 500
|
Danio rerio (taxid: 7955) |
| >sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 41/386 (10%)
Query: 8 LLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFE 67
LL++FS +Y+ V LR +VG G+ L EF+P RG ++ + FW G++
Sbjct: 129 LLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLI 188
Query: 68 AALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQR 127
++A +V+P + WRWL+ ++S+P +++ + PE+ ++ + G A + LE +A+
Sbjct: 189 ISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKM 248
Query: 128 NGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWF 187
N + +P G LV P+L K G F LL ++ +RTTL +W
Sbjct: 249 NRSVMPEGQLVE----------------PIL----EKRG--RFADLLDSKYLRTTLQIWI 286
Query: 188 LFFGNSFVYYGVILLTSELNSEEARCGSTL----LLLEHAQDA--------------SLY 229
++ G SF YYGVIL ++EL + CGS ++E D+ S Y
Sbjct: 287 IWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDY 346
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289
+ I++L E+ L+ + ++ +GR++S++I T +F L L LF
Sbjct: 347 RTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFML 406
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349
R F +Y EVYPT +RA G G + ++ RIG MV P +S L++ A
Sbjct: 407 RALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSASFLGALCL 466
Query: 350 LLAVVIVLSIVCILLFPFETKGKRID 375
+V +V +I L P ETKG+ +
Sbjct: 467 FSSVCVVCAISAFTL-PIETKGRALQ 491
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | ||||||
| 383932368 | 482 | MFS [Gossypium hirsutum] | 0.986 | 0.767 | 0.662 | 1e-130 | |
| 224118680 | 492 | predicted protein [Populus trichocarpa] | 0.997 | 0.760 | 0.672 | 1e-127 | |
| 224118546 | 493 | predicted protein [Populus trichocarpa] | 0.986 | 0.750 | 0.618 | 1e-122 | |
| 255574249 | 497 | sugar transporter, putative [Ricinus com | 1.0 | 0.754 | 0.622 | 1e-122 | |
| 255573803 | 498 | sugar transporter, putative [Ricinus com | 0.989 | 0.744 | 0.606 | 1e-121 | |
| 218195538 | 529 | hypothetical protein OsI_17329 [Oryza sa | 1.0 | 0.708 | 0.541 | 1e-112 | |
| 222629519 | 424 | hypothetical protein OsJ_16102 [Oryza sa | 1.0 | 0.884 | 0.541 | 1e-111 | |
| 90265074 | 489 | H0702G05.6 [Oryza sativa Indica Group] | 1.0 | 0.766 | 0.541 | 1e-111 | |
| 38567900 | 588 | OSJNBa0060N03.20 [Oryza sativa Japonica | 1.0 | 0.637 | 0.541 | 1e-111 | |
| 413934140 | 500 | hypothetical protein ZEAMMB73_097319 [Ze | 1.0 | 0.75 | 0.536 | 1e-109 |
| >gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/376 (66%), Positives = 294/376 (78%), Gaps = 6/376 (1%)
Query: 6 AGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTI 65
AGLLS FS NYL+L LRGLVG GLG V LSWFLEFIPASNRGM MVV STFWT G+I
Sbjct: 104 AGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSI 163
Query: 66 FEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMA 125
FEA LAW+VMPRLNWRW+LA S+VPSFA+L+LYG+APE+P+YLC G +DA +LEK+A
Sbjct: 164 FEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKGNTSDALRILEKIA 223
Query: 126 QRNGTNLPSGMLVSDETATPDEEVIIPEHT-PLL-----SSTVNKSGSSSFLMLLSTELI 179
N T LP G+LVS + DEE E+T PLL S+T +KSG SSF ML S++LI
Sbjct: 224 SVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLI 283
Query: 180 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239
RTTLLLW LFFG+SF YYG+ILLTS+L+S ++ C +L + QD LY+N FITS+AE
Sbjct: 284 RTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAE 343
Query: 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAV 299
LPGLLLSA++VDRVGRK SMAIM L FIFL PLL QP LTT LLFGARM A GTF V
Sbjct: 344 LPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTV 403
Query: 300 ACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSI 359
A +Y+PE+YPTS+R TGAG+ASA+GRIGGMVCPLV+VGLV CHQTAA+ L V IV+SI
Sbjct: 404 ASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTAAVALFLVAIVVSI 463
Query: 360 VCILLFPFETKGKRID 375
VCI LFP++TKG+ +
Sbjct: 464 VCIQLFPYDTKGRELS 479
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/379 (67%), Positives = 302/379 (79%), Gaps = 5/379 (1%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG LS FS NY+SL+ LR LVG+GLG GPV SWFLEF+PAS+RG MVV STFW
Sbjct: 99 IITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFW 158
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T GTIFEAALAW+V+PRLNWRWLLA SS+PS A L Y + PE+P+YL G++ +A ++
Sbjct: 159 TFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNI 218
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVN-----KSGSSSFLMLLS 175
LEK+AQ N + LP GMLVSD T DEE ++TPLLSST N KSG SSF+ML S
Sbjct: 219 LEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFS 278
Query: 176 TELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235
++LIRTTLLLW LFFGN+F YYG+ILLTSEL+SEE +C ST+L E+ QD SLY+NVFIT
Sbjct: 279 SKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDSLYINVFIT 338
Query: 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANG 295
SLAELPG+LLSA+IVDR GRK+SMA M +L IFLLPL+ HQ TLTT LLFGARM A G
Sbjct: 339 SLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIG 398
Query: 296 TFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVI 355
TF VA +YAPEVYPT +RATGAG+A+AVGRIGGMVCPLV+VGLV GCH AI L VVI
Sbjct: 399 TFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVI 458
Query: 356 VLSIVCILLFPFETKGKRI 374
V+S+VC+LLFPFET G+ +
Sbjct: 459 VISVVCVLLFPFETSGREL 477
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/375 (61%), Positives = 289/375 (77%), Gaps = 5/375 (1%)
Query: 6 AGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTI 65
+GLLSAFS NY SLV +R LVG+GLG V SWFLEF+PA +RG MVV STFWTLG I
Sbjct: 103 SGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAI 162
Query: 66 FEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMA 125
FEA+LAW+VM RL+WRWLLA SS+PS A+LL YG+ PE+P+YLC G++ DA +L+K+A
Sbjct: 163 FEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIA 222
Query: 126 QRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVN-----KSGSSSFLMLLSTELIR 180
N + LP GMLV D T +E+ ++TPLLSST KS SSF ML S+ LI+
Sbjct: 223 LLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTLIQ 282
Query: 181 TTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240
TTLLLW L FGN F YYG+ILLTSEL+S++ +CGST+L E+ Q+ SLY+NVF+TSLAEL
Sbjct: 283 TTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAEL 342
Query: 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVA 300
PGLLLSA+IVDR+GRK+SMA+M +L IFL PLL + LTT +LFGARM G+F +A
Sbjct: 343 PGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIA 402
Query: 301 CVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIV 360
+YAPE+YPT++RATGAG+AS+VGRIGGM+CPLV+VGLVTGC+ T AI L VV+ +S
Sbjct: 403 TLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAF 462
Query: 361 CILLFPFETKGKRID 375
LLFPFETKG+ +
Sbjct: 463 SSLLFPFETKGQELS 477
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 237/381 (62%), Positives = 287/381 (75%), Gaps = 6/381 (1%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG +SAFS NYL+LV LR LVG GLG V LSWFLEFIP S+RG MV+ STFW
Sbjct: 102 VITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFW 161
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
TLG IFEA+LAW+VM RLNWRWLLALS+VPSF++LL YGL PE+P+YLC G+ A A V
Sbjct: 162 TLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQV 221
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL------SSTVNKSGSSSFLMLL 174
LEK+A N LP GMLVS DEE+ E L + KSG SSF +L
Sbjct: 222 LEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSGFSSFSLLF 281
Query: 175 STELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFI 234
S+ LI+TTLLLW LFFGN F YYG+ILLTS+L+S E++C T+L ++ QD SL+++V I
Sbjct: 282 SSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDESLFMDVLI 341
Query: 235 TSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFAN 294
TS AELPG+LLSA++VDR GRK+SMAIM I +IFLLPL++ Q LTT LLFGARMF+
Sbjct: 342 TSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSL 401
Query: 295 GTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVV 354
GTF VA +YAPE+YPTS+R+TGAG ASAVGRIGGMVCPLV+V LV+ CH AAI L VV
Sbjct: 402 GTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVV 461
Query: 355 IVLSIVCILLFPFETKGKRID 375
I +++VCILLFPFET G+ +
Sbjct: 462 IAITVVCILLFPFETSGRELS 482
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/376 (60%), Positives = 275/376 (73%), Gaps = 5/376 (1%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
+L AG LS F NY+SL+TLR LVGIGLG GPV SWFLEF+PAS+RG MVV ST W
Sbjct: 104 LLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTWMVVYSTSW 163
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T GTIFEA LAW+VMPRL+WRWLLA SS+PS +LL Y LAPE+P+YLCT G+ DA +
Sbjct: 164 TFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKGRFTDAHRI 223
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNK-----SGSSSFLMLLS 175
LEK+A N LP G+LVSD T DEE H PLLS + S SSF ML S
Sbjct: 224 LEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAFSSFFMLFS 283
Query: 176 TELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235
+ LI+TTLLLW L+FGNSF+YYG+ILLTSEL+ + C S LE+ QD +LY+++FIT
Sbjct: 284 SRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDENLYIDIFIT 343
Query: 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANG 295
SLAELPG++LSA+ VDR GRK SM M + IFLLPL++HQ L T LFGARM A G
Sbjct: 344 SLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLFGARMCAIG 403
Query: 296 TFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVI 355
TF +AC+Y PE+YPT +R TG+G+ASA GRIGGM+CPLV+VGLVTGCH A I + VV
Sbjct: 404 TFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAGIIVFEVVA 463
Query: 356 VLSIVCILLFPFETKG 371
+S +C+L FP+ETKG
Sbjct: 464 AISAICLLFFPYETKG 479
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 266/384 (69%), Gaps = 9/384 (2%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG LSAF+ NY+SL++LR LVGIGLG GPV SWFLEF+PA RG MVV S FW
Sbjct: 139 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 198
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T+GTIFEA+LAW VMP+ WRWLLALS+VPSF +LL Y + PE+P++LC G++ +A V
Sbjct: 199 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 258
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEE---------VIIPEHTPLLSSTVNKSGSSSFL 171
LEKMA+ N LPSG LVSD+ DE E ++ V+ G S
Sbjct: 259 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 318
Query: 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN 231
LLS +LIR TLLLW FFGN+F YYG++LLTSEL++ C + H+ DASLY N
Sbjct: 319 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 378
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM 291
VFI+S AE+PG LSA+IVDR+GRK+SMA M + +FL PL+ + LT V LFGAR+
Sbjct: 379 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 438
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351
+ +F + +YAPE+YPTS+R TG G+AS+VGRIGG++CPLV+V LV C QT AI L
Sbjct: 439 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 498
Query: 352 AVVIVLSIVCILLFPFETKGKRID 375
+VI LS + + FPFETKG R++
Sbjct: 499 ELVIFLSGLAVSFFPFETKGCRLN 522
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 266/384 (69%), Gaps = 9/384 (2%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG LSAF+ NY+SL++LR LVGIGLG GPV SWFLEF+PA RG MVV S FW
Sbjct: 34 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 93
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T+GTIFEA+LAW VMP+ WRWLLALS+VPSF +LL Y + PE+P++LC G++ +A V
Sbjct: 94 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 153
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEE---------VIIPEHTPLLSSTVNKSGSSSFL 171
LEKMA+ N LPSG LVSD+ DE E ++ V+ G S
Sbjct: 154 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 213
Query: 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN 231
LLS +LIR TLLLW FFGN+F YYG++LLTSEL++ C + H+ DASLY N
Sbjct: 214 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 273
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM 291
VFI+S AE+PG LSA+IVDR+GRK+SMA M + +FL PL+ + LT V LFGAR+
Sbjct: 274 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 333
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351
+ +F + +YAPE+YPTS+R TG G+AS+VGRIGG++CPLV+V LV C QT AI L
Sbjct: 334 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 393
Query: 352 AVVIVLSIVCILLFPFETKGKRID 375
+VI LS + + FPFETKG R++
Sbjct: 394 ELVIFLSGLAVSFFPFETKGCRLN 417
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 266/384 (69%), Gaps = 9/384 (2%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG LSAF+ NY+SL++LR LVGIGLG GPV SWFLEF+PA RG MVV S FW
Sbjct: 99 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 158
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T+GTIFEA+LAW VMP+ WRWLLALS+VPSF +LL Y + PE+P++LC G++ +A V
Sbjct: 159 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 218
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEE---------VIIPEHTPLLSSTVNKSGSSSFL 171
LEKMA+ N LPSG LVSD+ DE E ++ V+ G S
Sbjct: 219 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 278
Query: 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN 231
LLS +LIR TLLLW FFGN+F YYG++LLTSEL++ C + H+ DASLY N
Sbjct: 279 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 338
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM 291
VFI+S AE+PG LSA+IVDR+GRK+SMA M + +FL PL+ + LT V LFGAR+
Sbjct: 339 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 398
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351
+ +F + +YAPE+YPTS+R TG G+AS+VGRIGG++CPLV+V LV C QT AI L
Sbjct: 399 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 458
Query: 352 AVVIVLSIVCILLFPFETKGKRID 375
+VI LS + + FPFETKG R++
Sbjct: 459 ELVIFLSGLAVSFFPFETKGCRLN 482
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 266/384 (69%), Gaps = 9/384 (2%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG LSAF+ NY+SL++LR LVGIGLG GPV SWFLEF+PA RG MVV S FW
Sbjct: 198 IVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFW 257
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T+GTIFEA+LAW VMP+ WRWLLALS+VPSF +LL Y + PE+P++LC G++ +A V
Sbjct: 258 TVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDV 317
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEE---------VIIPEHTPLLSSTVNKSGSSSFL 171
LEKMA+ N LPSG LVSD+ DE E ++ V+ G S
Sbjct: 318 LEKMARLNNVQLPSGRLVSDKNIELDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVA 377
Query: 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN 231
LLS +LIR TLLLW FFGN+F YYG++LLTSEL++ C + H+ DASLY N
Sbjct: 378 KLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKN 437
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM 291
VFI+S AE+PG LSA+IVDR+GRK+SMA M + +FL PL+ + LT V LFGAR+
Sbjct: 438 VFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARL 497
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351
+ +F + +YAPE+YPTS+R TG G+AS+VGRIGG++CPLV+V LV C QT AI L
Sbjct: 498 CISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLF 557
Query: 352 AVVIVLSIVCILLFPFETKGKRID 375
+VI LS + + FPFETKG R++
Sbjct: 558 ELVIFLSGLAVSFFPFETKGCRLN 581
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413934140|gb|AFW68691.1| hypothetical protein ZEAMMB73_097319 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/386 (53%), Positives = 265/386 (68%), Gaps = 11/386 (2%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFW 60
++ S AG SAF+ NYLSL++LR LVGIGLG GPV SWFLEF+PA RG MVV S FW
Sbjct: 108 IMTSGAGFFSAFAPNYLSLISLRFLVGIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFW 167
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
T+GTI EA+LAW +MP+ WRWLLALS+VPSF +LL Y + PE+P++LC G+ +A +
Sbjct: 168 TVGTILEASLAWTIMPKFGWRWLLALSAVPSFLLLLFYAITPESPRFLCMKGRTTEAVDI 227
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL-----SSTVNKSGSSSFL---- 171
LEKMA+ N LPSG LVSD+ DE E T LL S +N+ S F
Sbjct: 228 LEKMARLNNVQLPSGRLVSDKNIELDEVSGSSESTTLLAGAEESDNLNEDQGSDFGGIKS 287
Query: 172 --MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY 229
LL+ +LIR TLLLW FFGN+F YYG++LLTSEL++ C + H+ +ASLY
Sbjct: 288 VGKLLAPKLIRATLLLWMAFFGNAFAYYGIVLLTSELSNGNRICAKEDVESVHSTNASLY 347
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289
NVFI+S AE+PG LSA+IVDR GRK SMA M + +FLLPL+ + LT + LFGA
Sbjct: 348 KNVFISSFAEIPGSFLSAMIVDRFGRKRSMASMLFTSCVFLLPLVFSRTDILTRISLFGA 407
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349
R+ + +F + +YAPE+YPT++R TG GIAS+VGRIGG++CPLV+V LV C QT AI
Sbjct: 408 RLCISASFTIVYIYAPEIYPTAVRTTGIGIASSVGRIGGILCPLVAVALVHSCQQTTAIL 467
Query: 350 LLAVVIVLSIVCILLFPFETKGKRID 375
L +VI LS + + FPFETKG R++
Sbjct: 468 LFELVIFLSGLAVSFFPFETKGCRLN 493
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 375 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.978 | 0.734 | 0.511 | 3.4e-93 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.914 | 0.625 | 0.338 | 3.1e-44 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.914 | 0.710 | 0.338 | 3.1e-44 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.914 | 0.627 | 0.338 | 3.9e-44 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.914 | 0.625 | 0.338 | 3.9e-44 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.914 | 0.625 | 0.338 | 8.1e-44 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.914 | 0.625 | 0.338 | 1e-43 | |
| UNIPROTKB|F1LPX1 | 548 | Svop "Synaptic vesicle 2-relat | 0.92 | 0.629 | 0.331 | 3.5e-43 | |
| RGD|620277 | 548 | Svop "SV2 related protein" [Ra | 0.92 | 0.629 | 0.331 | 4.5e-43 | |
| UNIPROTKB|Q9Z2I7 | 548 | Svop "Synaptic vesicle 2-relat | 0.92 | 0.629 | 0.331 | 4.5e-43 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 196/383 (51%), Positives = 246/383 (64%)
Query: 5 VAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGT 64
VAG LSAFS NY+ L+ LR LVG+GLG GPV SW+LEFIPA +RG MVV S FWT+GT
Sbjct: 102 VAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGT 161
Query: 65 IFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
IFEA+LAW+VMPRL WRWLLA SSVPS +LL Y E+P+YL G+ A+A +LEK+
Sbjct: 162 IFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKI 221
Query: 125 AQRNGTNLPSGMLVSD-ETATPDEEVIIPEHTPLLSS--------------TVNKSGSSS 169
A+ N T LP G+L S+ ET + + I E+T LL + +K S
Sbjct: 222 ARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFS 281
Query: 170 FLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY 229
L LLS L++ TLLLW +FFGN+F YYGV+LLT+ELN+ RC T L ++ D + Y
Sbjct: 282 LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-Y 340
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGA 289
+VFI S AE PGLL+SA +VDR+GRK SMA M HQ +TTVLLFG
Sbjct: 341 RDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGG 400
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTXXXX 349
R+ + F V +YAPE+YPT++R TG G+ S+VGRIGG++CPLV+VGLV GCHQT
Sbjct: 401 RICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVL 460
Query: 350 XXXXXXXXXXXXXXXFPFETKGK 372
FPFET G+
Sbjct: 461 LFEVVILVSGICVCLFPFETSGR 483
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 127/375 (33%), Positives = 193/375 (51%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVILAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E +++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGRMKDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S+ + EA+C L E+ + Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSQKKAVEAKCS---LACEYLSEED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 503 LASCF--LPIETKGR 515
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 127/375 (33%), Positives = 193/375 (51%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 99 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 158
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 159 EVILAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 216
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E +++ P T LL + S + S+ L+LL+TEL
Sbjct: 217 ATENGAPMPLGKLIISRQEDRGRMKDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 276
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S+ + EA+C L E+ + Y+++ T+L+
Sbjct: 277 FQA---------GD------VCSISSQKKAVEAKCS---LACEYLSEED-YMDLLWTTLS 317
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 318 EFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLTLLLFIARAFISGGFQ 377
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 378 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 437
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 438 LASCF--LPIETKGR 450
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 127/375 (33%), Positives = 191/375 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 163 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 222
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 223 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 280
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 281 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 340
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ + Y+++ T+L+
Sbjct: 341 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLS 381
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 382 EFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQ 441
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 442 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 501
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 502 LASCF--LPIETKGR 514
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 127/375 (33%), Positives = 191/375 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ + Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 503 LASCF--LPIETKGR 515
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 127/375 (33%), Positives = 191/375 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ + Y+++ T+L+
Sbjct: 342 FQA---------GD------VCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 503 LASCF--LPIETKGR 515
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 127/375 (33%), Positives = 190/375 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+VP FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVILAVFVMPSLGWRWLLLLSAVPLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSKED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ I+DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGK 372
P ETKG+
Sbjct: 503 LASCF--LPIETKGR 515
|
|
| UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 125/377 (33%), Positives = 190/377 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+ P FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIILKQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSKED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ ++DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGKRI 374
P ETKG+ +
Sbjct: 503 LASCF--LPIETKGRAL 517
|
|
| RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 125/377 (33%), Positives = 190/377 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+ P FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSKED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ ++DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGKRI 374
P ETKG+ +
Sbjct: 503 LASCF--LPIETKGRAL 517
|
|
| UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 125/377 (33%), Positives = 190/377 (50%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIF 66
G+LSAF+ Y ++ LRGLVG G+G P ++ + EF+P R +++I FW +GT+F
Sbjct: 164 GILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVF 223
Query: 67 EAALAWMVMPRLNWRWLLALSSVPS--FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
E LA VMP L WRWLL LS+ P FAVL + PE+ +Y +G A L+++
Sbjct: 224 EVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRI 281
Query: 125 AQRNGTNLPSGMLV--SDETATPDEEVIIPEH--TPLLSSTVNKSGSSSF--LMLLSTEL 178
A NG +P G L+ E ++ P T LL + S + S+ L+LL+TEL
Sbjct: 282 ATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEL 341
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238
+ G+ V ++S + EA+C L E+ Y+++ T+L+
Sbjct: 342 FQA---------GD------VCSISSRKKAVEAKCS---LACEYLSKED-YMDLLWTTLS 382
Query: 239 ELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFA 298
E PG+L++ ++DR+GRK +MA+ + T+LLF AR F +G F
Sbjct: 383 EFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQ 442
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTXXXXXXXXXXXX 357
A VY PEVYPT+ RA G G S + R+G ++ P ++ V L + + T
Sbjct: 443 AAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAA 502
Query: 358 XXXXXXXFPFETKGKRI 374
P ETKG+ +
Sbjct: 503 LASCF--LPIETKGRAL 517
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.5480 | 0.984 | 0.738 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 375 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-62 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-23 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-17 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 5e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-10 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 5e-08 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 6e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 9e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-05 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 8e-05 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 9e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 1e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 0.003 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-62
Identities = 107/375 (28%), Positives = 186/375 (49%), Gaps = 44/375 (11%)
Query: 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGL-GSGPVCLSWFLEFIPASNRGMLMVVISTFWT 61
+V+G+L+AFS NY + R LVG+G+ G + EF+P R ++ +I F++
Sbjct: 167 TAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFS 226
Query: 62 LGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVL 121
LG + +A+ + WRWL S+P+F LL PE+P++L + G++ +A +L
Sbjct: 227 LGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL 283
Query: 122 EKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLST-ELIR 180
+++A+ NG LP+ +L + +++ LSS+ + SFL L T L +
Sbjct: 284 QRIAKINGKKLPAEVLSL----SLEKD---------LSSSKKQY---SFLDLFRTPNLRK 327
Query: 181 TTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240
TTL L L+F +F YYG++L L ++Y+++FI+ L EL
Sbjct: 328 TTLCLMMLWFTTAFSYYGLVLDLGNL------------------GGNIYLDLFISGLVEL 369
Query: 241 PGLLLSAVIVDRVGRKISMAIMSIL--TFIFLLPLLTHQPVTLTTVLLFGARMFANGTFA 298
P L++ +++DR+GR+ +MA +L + LL + L T L + F
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ 429
Query: 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLS 358
+ +Y E+YPT +R G G+ S + R+G ++ P + + + L + +L+
Sbjct: 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--YLGEKWLFLPLVLFGGLALLA 487
Query: 359 IVCILLFPFETKGKR 373
+ L P ETKG
Sbjct: 488 GILTLFLP-ETKGVP 501
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 4e-23
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 38/337 (11%)
Query: 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFW 60
L SV LL A + N L+ LR L G+GLG P + E+ P RG + ++ +
Sbjct: 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY 150
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSV-PSFAVLLLYGLAPETPKYLCTAGKMADAAH 119
+G LA ++P WR L + + P +LLL PE+ +L +
Sbjct: 151 PIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPET-VRR 209
Query: 120 VLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELI 179
++ +A + S P +T S F L +
Sbjct: 210 IVNAIAPQMQAEAQS-------------------ALPEQKATQGT-KRSVFKALFQGKTA 249
Query: 180 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNV-FITSLA 238
R T+LLW L+F Y + +L E SL + +
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF------------SLSLAATGGALFNFG 297
Query: 239 ELPGLLLSAVIVDRVGRKISMAI-MSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTF 297
+ G ++ + DR+G +++ + + F L+ P L + A F NG
Sbjct: 298 GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI-AGFFVNGGQ 356
Query: 298 AVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLV 334
+ YPT++RATG G A +GR+G ++ P++
Sbjct: 357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL 393
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 91/390 (23%), Positives = 152/390 (38%), Gaps = 53/390 (13%)
Query: 2 LASVAGLLSAFS--LNYLSLVTLRGLVGIGLGSGPVCLSWFL-EFIPASNRGMLMVVIST 58
L + LL F+ ++ L+ R +VG+G+G V + ++ E P RG L +
Sbjct: 85 LFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQL 144
Query: 59 FWTLGTIFEAALAW---MVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMA 115
T G + A + WR L L VP+ +L+ PE+P++L GK+
Sbjct: 145 GITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE 204
Query: 116 DAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLS 175
+A VL K G + + E E + E L K+ LM +
Sbjct: 205 EARAVLAK---LRGVSDVDQEI--QEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGV- 258
Query: 176 TELIRTTLLLWFLFFG--NSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVF 233
+L F N+ YY + + S+ T+++ VN
Sbjct: 259 -------MLQIFQQLTGINAIFYYSPTIFETLGLSDSL--LVTIIV--------GVVNFV 301
Query: 234 ITSLAELPGLLLSAVIVDRVGRK-------ISMAIMSILTFIFLLPLLTHQ---PVTLTT 283
T ++ +VDR GR+ MAI ++ + LL + + V +
Sbjct: 302 FT--------FIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVF 353
Query: 284 VLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 343
+LLF A FA G V V E++P +R IA+A + + + +
Sbjct: 354 ILLFIA-FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG 412
Query: 344 QTAAIFLL-AVVIVLSIVCILLFPFETKGK 372
+FL+ A ++VL I+ + F ETKG+
Sbjct: 413 --GYVFLVFAGLLVLFILFVFFFVPETKGR 440
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 79/388 (20%), Positives = 141/388 (36%), Gaps = 41/388 (10%)
Query: 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLG-SGPVCLSWFLEFIPASNRGMLMVVISTFW 60
+ ++ L+AF+L+ L+ R L+GIG+G + + + E P + RG L +
Sbjct: 113 IGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI 172
Query: 61 TLGTIFEAA---LAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADA 117
T G + + L WR L L +P+ + L PE+P++L G++ +A
Sbjct: 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEA 232
Query: 118 AHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTE 177
L ++ GT+ L+ + + I ++ S L
Sbjct: 233 RKSLARL---RGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF--- 286
Query: 178 LIRTTLLLWFLFF--GNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235
+L WF F N+ +YY + + + D + V+ I
Sbjct: 287 --LGVVLQWFQQFTGINAIMYYSPTIFEN---------------AGVSTDHAFLVS-IIV 328
Query: 236 SLAELPGLLLSAVIVDRVGRK-----------ISMAIMSILTFIFLLPLLTHQPVTLTTV 284
++ +VDR GR+ I + ++ IL F+
Sbjct: 329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVF 388
Query: 285 LLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQ 344
+L FA G V V E++P SLR G IA A + + + ++
Sbjct: 389 ILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV 448
Query: 345 TAAIFLLAVVIVLSIVCILLFPFETKGK 372
+ VL ++ + F ETKG+
Sbjct: 449 GGVFIFFGGLNVLGLIFVYFFLPETKGR 476
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 5e-14
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTL 62
S+F Y + R L G G+G P+ S+F EF+ RG + + FW +
Sbjct: 243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMI 302
Query: 63 GTIFEAALAWMVMPRL-------------NWRWLLALSSVPSFAVLLLYGLAPETPKYLC 109
G I+ AA+AW ++P +WR + + + P + PE+P++
Sbjct: 303 GGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
Query: 110 TAGKMADAAHVLEKMAQRN--GTNLPSGMLVSDETATP---DEEVIIPEHTP-------L 157
GK +A +L+ + N P + + T DE + I T +
Sbjct: 363 ENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFV 422
Query: 158 LSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGV 199
+ + +FL + E+ T+ L ++F SF YYG+
Sbjct: 423 RALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 11/198 (5%)
Query: 170 FLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY 229
L LL L+R LLL FF SF YYG++ L + A
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLSAAEAG 214
Query: 230 VNVFITSLAELPGLLLSAVIVDRVGRK-ISMAIMSILTFIFLLPLLTHQPVTLTTVLLFG 288
+ + + L + G LL ++ DR+GR+ + + I +L + LL L + L V L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 289 ARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAI 348
F A E+ P R T +G+ + G +GG + PL++ L+
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVF 334
Query: 349 FLLAVVIVLSIVCILLFP 366
+LA + +L+ + +LL P
Sbjct: 335 LILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 82/318 (25%), Positives = 126/318 (39%), Gaps = 45/318 (14%)
Query: 80 WRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMAD-AAHVLEKMAQRNGTNLPSGMLV 138
WR L+ +VP+ L PETP+Y K + AA + + Q P
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEP----- 257
Query: 139 SDETATPDEEVIIPEHTPLLSSTVNKSGS-SSFLMLLSTELIRTTLLLWFLFFGNSFVYY 197
DE V +P+ + S LL T WFL +Y
Sbjct: 258 -DEVEKASTAVEVPKAS--WSDFFTHFFKWRHGKHLLGTAGS------WFLL---DIAFY 305
Query: 198 GVILLTSELNSE--EARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGR 255
GV L + S + +T E ++ N+ I +PG ++ +VD +GR
Sbjct: 306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAV-GNLIIALAGTVPGYWVTVFLVDIIGR 364
Query: 256 K-ISMAIMSILTFIFLL------PLLTHQPVTLTTVLLFGARMFAN-GTFAVACVYAPEV 307
K I + ILT +F + L TH + + + F FAN G A + EV
Sbjct: 365 KPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF----FANFGPNATTFIVPGEV 420
Query: 308 YPTSLRATGAGIASAVGRIGGMVCPL----------VSVGLVTGCHQTAAIFLLAVVIVL 357
+PT R+T GI++A G+ G ++ + G TG + + A+ + L
Sbjct: 421 FPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL 480
Query: 358 SIVCILLFPFETKGKRID 375
I+ LL P ETKGK ++
Sbjct: 481 GILFTLLIP-ETKGKSLE 497
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 245 LSAVIVDRVGRKISMAIMSILTFIFLLPLLT----HQPVTLTTVLLFGARMFANGTFAVA 300
LS + DR+GR+ + I ++L + +PLL TL L+ G +
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333
Query: 301 CVYAPEVYPTSLRATGAGIASAVGR-IGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVL 357
+ PE++PT +R TGA +A + I G P ++ LV AI + L
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 65/339 (19%), Positives = 129/339 (38%), Gaps = 47/339 (13%)
Query: 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWF-LEFIPASNRGMLMVVISTFW 60
L S L F+ Y+++ R ++GIG+G + + +E P R ++ + +
Sbjct: 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145
Query: 61 TLGTIFEAALAWMVMP--RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAA 118
+G + A + +V+P WR L +S +P L L PE +
Sbjct: 146 AVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA--------EDWKEK 197
Query: 119 HVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTEL 178
H + + + L G EH ++ +M L+ +
Sbjct: 198 HAGKALVRTMVDILYGG-----------------EHRI-----------ANIVMTLAAAM 229
Query: 179 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN--VFITS 236
+++ W FVY V++L + L S + L + V V ++
Sbjct: 230 VQSAGKRWPT-----FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSN 284
Query: 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH-QPVTLTTVLLFGARMFANG 295
+ + G + + D +GR+ + + + ++P+ V + + LF +M G
Sbjct: 285 IGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG 344
Query: 296 TFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLV 334
+ + + E +PT RA G G +G +GG + P++
Sbjct: 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-08
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 180 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239
TLLLW +F V Y L + L S G L +Q V + ++
Sbjct: 220 TATLLLWISYFFTLIVLY---FLLNWLPSLLVGQG-----LSRSQAG--LVQIAF-NIGG 268
Query: 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAV 299
G LL ++DR+ + + ++ L L + F A +F G +V
Sbjct: 269 ALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328
Query: 300 ACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLA---VVIV 356
AP YPT +R TG G A AVGR+G M PL++ G + ++ + A V++V
Sbjct: 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA-GQLLALGRSTVGVIGASIPVILV 387
Query: 357 LSIVCILL 364
++ +LL
Sbjct: 388 AALAALLL 395
|
Length = 406 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 228 LYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFI--FLLPLLTHQPVTLTTVL 285
+Y F+ +LA LPG ++SA+++D++GR +A +L+ I F L + + +
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656
Query: 286 LFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQT 345
LFG A + V E+YP+ RAT G +A+ + ++ L+ V G +
Sbjct: 657 LFGGLSIA--AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITKA 713
Query: 346 AAIFLLAVVIVLSIVCILLFPFETKGK 372
A I + + + L P +T+G+
Sbjct: 714 APILFASAALACGGLLALKLP-DTRGQ 739
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 34/142 (23%), Positives = 56/142 (39%)
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM 291
+ SL L+ + DR GR+ + I +L + LL LL + L VL +
Sbjct: 38 LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351
F A + +P R G+ SA +G + PL+ L + AA +L
Sbjct: 98 GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157
Query: 352 AVVIVLSIVCILLFPFETKGKR 373
A++ +L+ V L +
Sbjct: 158 AILALLAAVLAALLLPRPPPES 179
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 8/182 (4%)
Query: 185 LWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLL 244
L LF G LL+ L + + V SL G L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSP--------ALPLLAEDLGLSASQAGLIVSAFSLGYALGSL 52
Query: 245 LSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYA 304
L+ + DR GR+ + + +L + L L + L V F + + A
Sbjct: 53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112
Query: 305 PEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILL 364
E +P R G+ SA +G ++ PL+ L +LA++ +L + +L
Sbjct: 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172
Query: 365 FP 366
Sbjct: 173 LL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL--LTHQPVTLTTVLLFGA 289
+F + G + + D +G + + +++ + ++P+ + V + +LLF
Sbjct: 317 LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ 376
Query: 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349
+M G + + T RA G G VG +GG + P++ + A+
Sbjct: 377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALA 436
Query: 350 LLAVVIVLSIVCILLFPF 367
L+ L+ V ILL
Sbjct: 437 SLSF--SLTFVVILLIGL 452
|
Length = 496 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 49/333 (14%), Positives = 99/333 (29%), Gaps = 63/333 (18%)
Query: 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFW 60
L ++ LL F+ + L+ LR L G+G G+ P + ++ P RG + ++S +
Sbjct: 71 LFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGF 130
Query: 61 TLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHV 120
LG L ++ WR + ++ + +L L
Sbjct: 131 GLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL-------------------- 170
Query: 121 LEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR 180
++ + + + L
Sbjct: 171 ----------------------------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRD 202
Query: 181 TTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240
L L F ++ ++ + + + + L
Sbjct: 203 PVLWLLLALLLFGFAFFALLTYL-----------PLYQEVLGLSALLAGLLLGLAGLLGA 251
Query: 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVA 300
G LL + DR+GR+ + + +L + L L + LL + G V
Sbjct: 252 IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVF 311
Query: 301 C---VYAPEVYPTSLRATGAGIASAVGRIGGMV 330
++ P R T +G+ + G +GG +
Sbjct: 312 PALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 24 GLVGIGLGSGPVCLSWFLEFIPASNRGML-----------MVVISTFWTLGTIFEAALAW 72
G +G+GL S + + E PA RG L +V+ F +W
Sbjct: 130 GGIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV-YFVNYFIARSGDASW 187
Query: 73 MVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKM 124
+ WR++ A ++P+ L+L PETP+YL + GK A +L K+
Sbjct: 188 LNT--DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 64/353 (18%), Positives = 108/353 (30%), Gaps = 76/353 (21%)
Query: 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFW 60
L ++ L FS + + L L GI G G P C ++ S RG + +
Sbjct: 69 LCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH 128
Query: 61 TLGTIFEA--ALAWMVMPRLNWRWLLALSS----VPSFAVLLLYGLAPETPKYLCTAGKM 114
+G L + +W W+ + + S LL +P++
Sbjct: 129 NVGGGLLPPLVLFGIAE-LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGL------- 180
Query: 115 ADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLL 174
P EE+ E K + +
Sbjct: 181 -----------------------------PPAEEMPNEEPD---GDAEKKEEELTKKQIF 208
Query: 175 STELIRTTLLLWFLFFGNSFVY--------YGVILLTSELNSEEARCGSTLLLLEHAQDA 226
++ +L W++ G FVY + + LT E + + L E
Sbjct: 209 LQYVLLNKVL-WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYE----- 262
Query: 227 SLYVNVFITSLAELPGLLLSAVIVDR--VGRKISMAIMSILTFIFLLPLLTHQP---VTL 281
L L G LL+ + D+ GR+ +A+ + I L + P +
Sbjct: 263 ----------LGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM 312
Query: 282 TTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLV 334
+ LF G + V A E+ P T AG +GG++ L
Sbjct: 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTF 59
+L ++ LL AF+ + L+ R L+G+G G+ P + E+ P RG + + S
Sbjct: 72 LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131
Query: 60 WTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLL 97
+ LG + L ++ L WRWL + ++ + LL
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 6/142 (4%)
Query: 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL--LTHQPVTLTTVLLFGARM 291
+ + G ++ + DR+G K + +I +++F+F+ PL + L LFG M
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL-M 332
Query: 292 FAN-GTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFL 350
N G + + + +P +R G G+ + G + + L AA+
Sbjct: 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392
Query: 351 LAVVIVLSIVCILLFPFETKGK 372
+V + +L+ +
Sbjct: 393 --IVAFWTATILLIIGLSIPDR 412
|
Length = 426 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 7/177 (3%)
Query: 196 YYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVF-ITSLAELPGLLLSAVIVDRVG 254
GVI L R G+ + A L + I S+ L G L + + DR G
Sbjct: 15 DTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFG 74
Query: 255 RKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM---FANGTFAVAC-VYAPEVYPT 310
RK S+ I ++L I LL + +L R+ G +V +Y E+ P
Sbjct: 75 RKKSLLIGNVLFVIGA--LLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPK 132
Query: 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367
LR + G +V ++ +GL + L + V +I+ ++ F
Sbjct: 133 KLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLF 189
|
Length = 449 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.96 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.94 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.92 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.88 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.88 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.87 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.87 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.86 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.85 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.85 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.85 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.85 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.85 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.84 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.83 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.83 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.82 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.82 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.81 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.81 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.81 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.8 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.8 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.8 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.8 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.79 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.79 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.79 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.78 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.77 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.77 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.77 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.76 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.76 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.76 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.74 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.74 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.74 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.74 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.73 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.73 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.73 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.72 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.71 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.7 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.68 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.67 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.67 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.64 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.64 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.64 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.64 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.64 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.63 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.61 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.61 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.58 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.55 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.52 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.51 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.48 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.47 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.47 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.45 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.45 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.43 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.39 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.37 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.36 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.32 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.28 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.26 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.25 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.23 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.23 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.18 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.18 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.18 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.17 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.17 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.16 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.15 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.15 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.15 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.12 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.11 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.11 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.11 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.09 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.09 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.08 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.08 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.08 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.07 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.07 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.07 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.06 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.06 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.04 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.04 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.02 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.99 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.99 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.98 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.96 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.9 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.84 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.84 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.8 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.8 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.79 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.77 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.77 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.76 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.75 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.74 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.74 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.73 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.72 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.7 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.69 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.68 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.68 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.68 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.68 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.66 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.65 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.64 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.64 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.61 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.6 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.59 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.59 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.58 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.58 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.55 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.52 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.52 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.5 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.48 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.47 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.46 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.45 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.45 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.43 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.39 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.39 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.35 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.34 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.33 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.32 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.28 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.14 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.13 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.13 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.08 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.05 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.04 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.02 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.01 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.94 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.93 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.93 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.92 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.87 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.84 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.72 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.72 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.67 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.62 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.61 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.57 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.54 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.44 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.33 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.26 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.21 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.19 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.17 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.14 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.09 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.78 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.76 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 96.45 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.36 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.29 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.29 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.27 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.22 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.13 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.06 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.65 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.62 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.57 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.46 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.45 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 95.45 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 95.41 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.3 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 94.44 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 93.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.54 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.4 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.32 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 91.13 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 87.97 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 85.62 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.19 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 83.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 83.32 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 82.82 |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=352.45 Aligned_cols=365 Identities=40% Similarity=0.661 Sum_probs=301.6
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRW 82 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~ 82 (375)
+++.+++.+.++|+..+.++|.+.|+|+|+.|+..++..|.-|...|+..+.+. ..|.+|+++.+.+++......||||
T Consensus 153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 153 TGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567788899999999999999999999999888888889999999999999888 9999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccc
Q 017193 83 LLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTV 162 (375)
Q Consensus 83 ~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (375)
..+...+|..+...+.+++||||||++.+|+.+||.+.++|+++.|+++.|...+......+.+++..+.++... +.
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~---~a 308 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS---SA 308 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh---cc
Confidence 999888999988899999999999999999999999999999999999888876544332222222211111100 11
Q ss_pred cccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccch------hhh----ccccchhhHHHH
Q 017193 163 NKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTL------LLL----EHAQDASLYVNV 232 (375)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~ 232 (375)
.+....+...++.++.||+++.+|..|++|.+.||+..++...+..++.-|+... ... ....+ .-|.+.
T Consensus 309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~-~dYrdl 387 (528)
T KOG0253|consen 309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVA-KDYRDL 387 (528)
T ss_pred ccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccch-hHHHHH
Confidence 1222235668899999999999999999999999999988776654433222211 111 11122 237788
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
++..+...||.++.++++||+|||+.+..+.++++++.++....+.........|...++..+.+...|+|++|+|||.+
T Consensus 388 litslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence 88899999999999999999999999999999999988887766655455667788888899999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 374 (375)
|++|.|.|..++++|+++.|++. +....+...+.++++++++++++++-+++-|||||++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999987 4556667788999999999999999999999999986
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=315.72 Aligned_cols=338 Identities=21% Similarity=0.295 Sum_probs=247.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH--hcCCCch
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWM--VMPRLNW 80 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~W 80 (375)
++...++-..+++++++++|++.|+..|.. ...+.|+.|++|++.||.++.+.+.+..+|.+++..++.. ..++..|
T Consensus 104 ~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W 183 (485)
T KOG0569|consen 104 ALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW 183 (485)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch
Confidence 344455555689999999999999999975 4567899999999999999999999999999999877643 3466779
Q ss_pred HHHHHHHhHHHHHHHHHHhcCcCCchhhhh-cCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAVLLLYGLAPETPKYLCT-AGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~~~~~pESp~~l~~-~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
++.+.+..+|+++.++..+++|||||||.. |||++||++.++++|++++.+...++. .+|+++
T Consensus 184 ~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~-------~~e~~~--------- 247 (485)
T KOG0569|consen 184 PYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM-------LREIEE--------- 247 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH-------HHHHHH---------
Confidence 999999999999999999999999999988 999999999999998654321110000 000000
Q ss_pred ccccccchhhhHHhhhhh-hHHHHHHHHHHHHH------hhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHH
Q 017193 160 STVNKSGSSSFLMLLSTE-LIRTTLLLWFLFFG------NSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNV 232 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (375)
.+.++.+..++.++++.+ +|+...+.....++ +...+|+..++...- ...+...+.+
T Consensus 248 ~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG---------------~~~~~a~~an- 311 (485)
T KOG0569|consen 248 EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG---------------FTPEEAQYAN- 311 (485)
T ss_pred hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC---------------CCHHHHHHHH-
Confidence 001111234566777654 45544443333333 334456655443210 1112223433
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh----cc-c-hhHH---HHHH-HHHHHHhhhhccccee
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT----HQ-P-VTLT---TVLL-FGARMFANGTFAVACV 302 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~-~-~~~~---~~~~-~~~~~~~~~~~~~~~~ 302 (375)
...++..++.++++.+++||+|||++++.+..++.++.+.+.. .. . .+.. ..+. .....+..|.++++|.
T Consensus 312 ~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 312 LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 4556778899999999999999999999988877765554432 11 1 1111 1112 2233456788899999
Q ss_pred eccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 017193 303 YAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 303 ~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 374 (375)
+.+|++|++.|+++.+++..++|+..++....++.+.+..|. ..+++|.+.+.+.+++.|.+.||||||+.
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 999999999999999999999999999999999988877765 67889999999999999999999999974
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=329.02 Aligned_cols=370 Identities=23% Similarity=0.375 Sum_probs=261.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP----- 76 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----- 76 (375)
.++++++++++++++.++++|++.|++.|+. ++..++++|++|+++||+..++.+.++.+|.++++.+++.+.+
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4577888899999999999999999999974 7778999999999999999999999999999999887766543
Q ss_pred --------CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCC--CCCcccc---CCCC
Q 017193 77 --------RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNL--PSGMLVS---DETA 143 (375)
Q Consensus 77 --------~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~--~~~~~~~---~~~~ 143 (375)
..+||++++++++|+++.++.++++||||+||..+||.+||.++++++++.|++.. +...... +...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 24799999999999988888888999999999999999999999999987664321 1100000 0000
Q ss_pred CCCcccCCC-CCCC------cccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhh---h--
Q 017193 144 TPDEEVIIP-EHTP------LLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEE---A-- 211 (375)
Q Consensus 144 ~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 211 (375)
..++..+.. +... ............++..+|+++++++++++|+.|++..+.||++..|.|.+.... +
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~ 481 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA 481 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0000 000000011112467799999999999999999999999999999988653210 0
Q ss_pred ------------------------------------------------------------------hcccchhhh-----
Q 017193 212 ------------------------------------------------------------------RCGSTLLLL----- 220 (375)
Q Consensus 212 ------------------------------------------------------------------~~~~~~~~~----- 220 (375)
+|.......
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 561 (742)
T TIGR01299 482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF 561 (742)
T ss_pred hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence 000000000
Q ss_pred ---------------c-------------cccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 017193 221 ---------------E-------------HAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP 272 (375)
Q Consensus 221 ---------------~-------------~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~ 272 (375)
. .......+....+.+++.++|.+++++++||+|||++++.+.++++++.+.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll 641 (742)
T TIGR01299 562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFF 641 (742)
T ss_pred hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 0 000011345556677888999999999999999999998888777776655
Q ss_pred HhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHH
Q 017193 273 LLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLA 352 (375)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (375)
+....+.....++.++..++..+.++..+++++|++|++.|++++|+++..+++|++++|.+.+.+... +...++++++
T Consensus 642 ~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a 720 (742)
T TIGR01299 642 LSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFAS 720 (742)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence 544333222222233334444556678889999999999999999999999999999999998766543 3445666677
Q ss_pred HHHHHHHHHHHhccccccCCCC
Q 017193 353 VVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 353 ~~~~~~~~~~~~~~pet~~~~~ 374 (375)
++.++++++.++ .|||+++.+
T Consensus 721 ~~lll~~ll~~~-LPET~~~~l 741 (742)
T TIGR01299 721 AALACGGLLALK-LPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHHh-CCCCccccc
Confidence 776666666554 589999875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=307.04 Aligned_cols=346 Identities=22% Similarity=0.284 Sum_probs=231.9
Q ss_pred hHHHHHHHHhhhh------HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017193 3 ASVAGLLSAFSLN------YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM 75 (375)
Q Consensus 3 ~~i~~~~~~~~~~------~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~ 75 (375)
..+++++++++++ ++.++++|+++|++.|+. +....|++|++|+|+||+.+++.+.++.+|.++++.++..+.
T Consensus 96 ~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 96 MIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777765 789999999999999985 677899999999999999999999999999999887765432
Q ss_pred C-----------------------CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChH-HHHHHHHHHHHHhCCC
Q 017193 76 P-----------------------RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMA-DAAHVLEKMAQRNGTN 131 (375)
Q Consensus 76 ~-----------------------~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~-ea~~~l~~~~~~~~~~ 131 (375)
. .++||+++.++++|+++.++.++++|||||||..|+|.+ ++++.+++.+..+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~ 255 (502)
T TIGR00887 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEA 255 (502)
T ss_pred HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccccc
Confidence 1 258999999999999988888899999999999999985 4777676654321110
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhh----hhHHHHHHHHHHHHHhhhhhhhHHHhhhhhh
Q 017193 132 LPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLST----ELIRTTLLLWFLFFGNSFVYYGVILLTSELN 207 (375)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (375)
+ . ++.++.++ ++ +. ...+++++++. ++++.++.++..++.+.+.+|+...+.|.+.
T Consensus 256 ---~--~----~~~~~~~~--~~-------~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~ 315 (502)
T TIGR00887 256 ---E--P----DEVEKAST--AV-------EV--PKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL 315 (502)
T ss_pred ---C--c----ccccchhc--cc-------cc--hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH
Confidence 0 0 00000000 00 00 01245666643 2334444455566667778888777766543
Q ss_pred hhhhhcccchhhhccccch-------hhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--cc-
Q 017193 208 SEEARCGSTLLLLEHAQDA-------SLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--HQ- 277 (375)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~- 277 (375)
....... ...... ....+..+..++.+++.+++++++||+|||+.++.+..+..++...+.. ..
T Consensus 316 ~~~G~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 316 SAIGYSP------PAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred HHHcCCC------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2211000 000000 0111233444566789999999999999999987766655544333321 11
Q ss_pred chhHHHHHH-HHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhccc----------chhH
Q 017193 278 PVTLTTVLL-FGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGC----------HQTA 346 (375)
Q Consensus 278 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 346 (375)
+........ +...++..+..+..|.+++|++|++.|+++.|+.+.+++++++++|++.+.+.+.. +...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 111111111 12222344566788999999999999999999999999999999999998877632 2235
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 347 AIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
.+++++++++++.+. +++.||||+|++|
T Consensus 470 ~~~i~~~~~~~~~i~-~~~lpEt~~~~le 497 (502)
T TIGR00887 470 VLEIFALFMFLGILF-TLLIPETKGKSLE 497 (502)
T ss_pred HHHHHHHHHHHHHHH-heEeccCCCCCHH
Confidence 667788777776654 4567999999875
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=282.49 Aligned_cols=333 Identities=32% Similarity=0.598 Sum_probs=245.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
.+++++++++++|++.++++|++.|++.|+. +....++.|+.|+++|++..++.+.++.+|.++++.+++.+. +||
T Consensus 167 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr 243 (505)
T TIGR00898 167 TAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWR 243 (505)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH
Confidence 4577888889999999999999999999984 677899999999999999999999999999999998887654 499
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.+++.+++.++..+..+++||||+|+..++|.+|+++.+++..+.|+++.+.+... .+.+++. .
T Consensus 244 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~~~--~--------- 308 (505)
T TIGR00898 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLS----LSLEKDL--S--------- 308 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHh----hhhhhhh--h---------
Confidence 999999999888877778899999999999999999999999887775432211000 0000000 0
Q ss_pred ccccchhhhHHhhhh-hhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 162 VNKSGSSSFLMLLST-ELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
. +.+..+++++++. +.++.++..+..++.+.+.||+...+.+.+. .+.+.+..+.++..+
T Consensus 309 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~i 369 (505)
T TIGR00898 309 S-SKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------------------GNIYLDLFISGLVEL 369 (505)
T ss_pred h-ccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC------------------CChHHHHHHHHHHHH
Confidence 0 0001245566654 4555666666777777777887766544321 123455566778889
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPV--TLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
++.++.+++.||+|||+.+..+.++++++.+.+....+. .......+...++..+.++..+++.+|++|++.|+++.|
T Consensus 370 ~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 449 (505)
T TIGR00898 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVG 449 (505)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHh
Confidence 999999999999999999888777666655444332221 222223333334444556778899999999999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
+.+.+++++++++|.+.. ....+...++++++++.+++++..+ +.|||++++++
T Consensus 450 ~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~ 503 (505)
T TIGR00898 450 VCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCC
Confidence 999999999999999877 3334455677777777777766654 56899999875
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=285.91 Aligned_cols=343 Identities=22% Similarity=0.330 Sum_probs=243.4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-LN 79 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~ 79 (375)
+..++++++++++|+.+++++|+++|+|.|+. .+++.|++|++|++.||...+..+.++.+|.+++..+++..... ++
T Consensus 128 ~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~ 207 (513)
T KOG0254|consen 128 LFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAG 207 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc
Confidence 45689999999999999999999999999985 56789999999999999999999999999999997777665433 58
Q ss_pred hHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 80 WRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
||+++.+..+|+++..+..+++||||+||.++||.+||++++++++..++.+ .. .+.++.+... ..+
T Consensus 208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~--~~-------~~~~~~~~~~----~~~ 274 (513)
T KOG0254|consen 208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED--VE-------VELELLKIKL----LVE 274 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc--hH-------HHHHHHHHHH----HHh
Confidence 9999999999999998778899999999999999999999999997532111 00 0011110000 000
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhh------hhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHH
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNS------FVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVF 233 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (375)
.........+.+++.+..+|+......+...+. ..||...++... +.++.. ....+
T Consensus 275 -~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~----------------g~~~~~-~~~~~ 336 (513)
T KOG0254|consen 275 -AEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA----------------GLKSDT-FLASI 336 (513)
T ss_pred -hhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc----------------CCCCch-HHHHH
Confidence 000000113456666656666665444433332 334444332211 111111 44456
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---c--c----c---hhHHH-HHHHHHHHHhhhhcccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---H--Q----P---VTLTT-VLLFGARMFANGTFAVA 300 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~--~----~---~~~~~-~~~~~~~~~~~~~~~~~ 300 (375)
+.++..+++++++.+++||+|||+.++.+.....++.+.+.. . . . .+... ...+....+..+..+++
T Consensus 337 ~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~ 416 (513)
T KOG0254|consen 337 ILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVP 416 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccch
Confidence 777888889999999999999999999887766665554331 1 1 0 11111 12223334556778899
Q ss_pred eeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH-HHHhccccccCCCCC
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIV-CILLFPFETKGKRID 375 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~ 375 (375)
|.+.+|+||.++|+++.+++..++|+.+++....++.+....+....+.+|++.+.+... +++++.|||||+++|
T Consensus 417 w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sle 492 (513)
T KOG0254|consen 417 WVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLE 492 (513)
T ss_pred hhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence 999999999999999999999999999888877777665543324566777777777777 788999999999875
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=320.25 Aligned_cols=342 Identities=27% Similarity=0.461 Sum_probs=237.7
Q ss_pred hhHHHHHHHHhhh---hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 017193 2 LASVAGLLSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP- 76 (375)
Q Consensus 2 ~~~i~~~~~~~~~---~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~- 76 (375)
+..+++++.++++ |++.+.++|++.|++.|+. +....|+.|.+|+|+||+..++.+.++.+|.+++..+++....
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3467888999999 9999999999999999985 6778999999999999999999999999999998887766543
Q ss_pred --CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCC
Q 017193 77 --RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEH 154 (375)
Q Consensus 77 --~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (375)
.++||+.+.++++|+++.++...++|||||||..|||+|||+++++++++++..+. +.+++.++.++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-----------~~~~~~~~~~~ 233 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-----------EIEEIKAEKKE 233 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccc-----------ccccccccccc
Confidence 34599999999999988888888999999999999999999999988654321110 11111110000
Q ss_pred CCcccccccccchhhhHHhhhhh-hHHHHHHHHHHHHHhhhhh-hhHHHhhhhhhhhhhhcccchhhhccccchhhHHHH
Q 017193 155 TPLLSSTVNKSGSSSFLMLLSTE-LIRTTLLLWFLFFGNSFVY-YGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNV 232 (375)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (375)
.+ +. ..+++++++.+ ++++........+.+.+.+ +....+.+.+.... +.++ + +...
T Consensus 234 ~~-----~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~-----------~~~~-~-~~~~ 292 (451)
T PF00083_consen 234 SQ-----ES---KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA-----------GISN-S-FLAT 292 (451)
T ss_pred cc-----cc---ceeeeecccccccccccccccccccccccccccccccccccccccc-----------cccc-c-cccc
Confidence 00 00 02445566543 3455444443333332222 22222223222110 0111 1 2233
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh----hcc-c----hhHHHHHHHH-HHHHhhhhccccee
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL----THQ-P----VTLTTVLLFG-ARMFANGTFAVACV 302 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~----~~~-~----~~~~~~~~~~-~~~~~~~~~~~~~~ 302 (375)
...++..+++.+++.+++||+|||++++.+.++++++...+. ... . ......+... ...+..+..+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~ 372 (451)
T PF00083_consen 293 LILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWI 372 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 444566678888889999999999998877766655444432 111 1 1111111111 11233466778899
Q ss_pred eccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 303 YAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 303 ~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
+.+|+||++.|+++.|++..++++++++.|.+.+.+.+..+....+.+++++++++.++.+++.||||||++|
T Consensus 373 ~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ 445 (451)
T PF00083_consen 373 YTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE 445 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence 9999999999999999999999999999999888776665545677888888888888999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=261.40 Aligned_cols=339 Identities=30% Similarity=0.472 Sum_probs=245.6
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
+..++++++++++|++.++++|+++|++.++. .++..+++|+.++|+|+.+..+....+..|.+..+..+++.. +|
T Consensus 157 ~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~---~W 233 (521)
T KOG0255|consen 157 LFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR---DW 233 (521)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh---hH
Confidence 45688899999999999999999999999875 677899999999999999999966667767666666666653 89
Q ss_pred HHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 81 RWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
|+.+++..+|+++.++.++..||||||+..+||.+||++.+++..+.|+++....+... +.. +.++...
T Consensus 234 r~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~-------~~~---~~~~~~~- 302 (521)
T KOG0255|consen 234 RWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLR-------LEL---LLRPLKL- 302 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHH-------HHH---HhhHhhh-
Confidence 99999999999988777777889999999999999999999999887743322111100 000 0000000
Q ss_pred cccccchhhhHHhhhhh-hHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 161 TVNKSGSSSFLMLLSTE-LIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
....+..++.++++.+ .+++++.+++.++.....||+.......+. .+.+.+....+...
T Consensus 303 -~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~ 363 (521)
T KOG0255|consen 303 -LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVE 363 (521)
T ss_pred -hccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHH
Confidence 0001112456677655 788888888888888889998776544322 24456666666788
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc--cch-hHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH--QPV-TLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
.++....+...|+.|||..+..+..+..++.+..... ... +...+......++....+...+.+.+|++||.+|+.+
T Consensus 364 ~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~ 443 (521)
T KOG0255|consen 364 LPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTA 443 (521)
T ss_pred hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 8999999999999999999988887776665554432 222 1223333344444445556679999999999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 374 (375)
.+.+..+++++++++|.+...... ........+++....+.+....++.|||+++.+
T Consensus 444 ~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 444 VGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 999999999999999987642222 222223333666777777777788899999865
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=247.80 Aligned_cols=321 Identities=17% Similarity=0.228 Sum_probs=201.4
Q ss_pred hhHHHHHHHHhhhhHHH--------HHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017193 2 LASVAGLLSAFSLNYLS--------LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAW 72 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~--------l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~ 72 (375)
+.+++++++++++|+++ ++++|+++|++.|+. +...++++|++|+|+||+..++.+.+..+|.++++.+..
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999975 899999999999986 667889999999999999999999888888888876553
Q ss_pred Hhc--------CCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCC
Q 017193 73 MVM--------PRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETAT 144 (375)
Q Consensus 73 ~~~--------~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
.+. +.+|||++|++.++++++.++.+..+||||+|+..+++.++.. .+ .
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~~-------------~ 232 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------RE-------------G 232 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------cc-------------c
Confidence 321 3689999999988777766667788999999864322211100 00 0
Q ss_pred CCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhcccc
Q 017193 145 PDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQ 224 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
.++. . ..++++++++ +++........++.....||+...+.|.+..... +.+
T Consensus 233 ~~~~--------------~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s 284 (490)
T PRK10642 233 LQDG--------------P---KVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNL----------HYS 284 (490)
T ss_pred cccc--------------c---cCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC
Confidence 0000 0 0123344543 3344444444444455667777766665432110 011
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH-Hh-hcc-chhHHHHHHHHHHHHhhhhcccce
Q 017193 225 DASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP-LL-THQ-PVTLTTVLLFGARMFANGTFAVAC 301 (375)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 301 (375)
............++.+++.++.+++.||+|||+.+..+.+...+..+. +. ... +........+...++.....+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 364 (490)
T PRK10642 285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMA 364 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112223345666788889999999999999877665433322221 11 111 122111111222222222334556
Q ss_pred eeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 017193 302 VYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQ-TAAIFLLAVVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 302 ~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 374 (375)
.+.+|++|++.|+++.|+.+..+++++.++|.+.+.+.+..+. ..+.++..+..+++.+.. ++.|||+++.+
T Consensus 365 ~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~ 437 (490)
T PRK10642 365 STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL 437 (490)
T ss_pred HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 7788999999999999999999999899999988877654332 233344444444444444 44589987543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=247.24 Aligned_cols=326 Identities=21% Similarity=0.268 Sum_probs=205.5
Q ss_pred hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc--------CCCchHHHHH
Q 017193 15 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM--------PRLNWRWLLA 85 (375)
Q Consensus 15 ~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~--------~~~~WR~~f~ 85 (375)
+++.++++|+++|++.|+. +....+++|++|+|+||+.+++.+....+|.++++.++.... ..++||++|+
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~ 198 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFA 198 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHH
Confidence 3567899999999999985 677899999999999999999999999999999887765442 3569999999
Q ss_pred HHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccccccc
Q 017193 86 LSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKS 165 (375)
Q Consensus 86 ~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (375)
+.+++.++..+..+++||||+|+..++|.+|+++.+++.++.+..+ ...++..+. .+.++
T Consensus 199 ~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--------~~~~~- 258 (479)
T PRK10077 199 SEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT-----------QALQEIKHS--------LDHGR- 258 (479)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH-----------HHHHHHHHH--------HHHhh-
Confidence 9988888877777889999999999999999887776653211000 000000000 00000
Q ss_pred chhhhHHhhhhhhHHHHHHH--HHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHH
Q 017193 166 GSSSFLMLLSTELIRTTLLL--WFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGL 243 (375)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 243 (375)
......+. ........ ....+.+...++....+.|.+.... +.+...........++..+++.
T Consensus 259 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-----------g~~~~~~~~~~~~~~~~~~i~~ 323 (479)
T PRK10077 259 --KTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTL-----------GASTDIALLQTIIVGVINLTFT 323 (479)
T ss_pred --hhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHc-----------CCCCchHHHHHHHHHHHHHHHH
Confidence 00000010 00000110 0111111222233333334332110 1111111223344566778889
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--ccc-hh-HHHHHH-HHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 244 LLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--HQP-VT-LTTVLL-FGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 244 ~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
+++++++||+|||+.++.+.++..+..+.+.. ..+ .. ...... +....+..+..+..+.+.+|++|++.|+++.|
T Consensus 324 ~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 403 (479)
T PRK10077 324 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA 403 (479)
T ss_pred HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence 99999999999999988877766554444321 111 11 111111 11111222233567899999999999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHhh------cccchhHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 319 IASAVGRIGGMVCPLVSVGLV------TGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
+.+..+++++++++.+.+.+. +..+....+.++++.+++++++.+++.||||++++|
T Consensus 404 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 466 (479)
T PRK10077 404 IAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466 (479)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 999999999999988877544 233334566677777777777888889999998653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=234.77 Aligned_cols=346 Identities=23% Similarity=0.302 Sum_probs=232.4
Q ss_pred hhHHHHHHHHhhh-------hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017193 2 LASVAGLLSAFSL-------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWM 73 (375)
Q Consensus 2 ~~~i~~~~~~~~~-------~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~ 73 (375)
+..++++++++.. -+..+...|++.|+|+|+. |.+.+..+|.+.+++||...+..-...++|.+.+.+++..
T Consensus 123 ImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I 202 (538)
T KOG0252|consen 123 IMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI 202 (538)
T ss_pred HHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence 4567777777652 3457889999999999997 6667888999999999999998888888888887776655
Q ss_pred hc-------CC--------CchHHHHHHHhHHHHHHHHHHhcCcCCchhhhh-cCChHHHHHHHHHHHHHhCCCCCCCcc
Q 017193 74 VM-------PR--------LNWRWLLALSSVPSFAVLLLYGLAPETPKYLCT-AGKMADAAHVLEKMAQRNGTNLPSGML 137 (375)
Q Consensus 74 ~~-------~~--------~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~-~~~~~ea~~~l~~~~~~~~~~~~~~~~ 137 (375)
+. +. .-||+.+.+.++|+++.+..+..||||+||-.. .++.+.|. ++.+++.+.+
T Consensus 203 v~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~~-- 273 (538)
T KOG0252|consen 203 VSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA-------GDMKKVLSVD-- 273 (538)
T ss_pred HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh-------hccccccccc--
Confidence 32 11 139999999999999999999999999998522 23323222 1111211110
Q ss_pred ccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccch
Q 017193 138 VSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTL 217 (375)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
.+++... +. +....++....+..++...+-++.+.....|+...+.+|+.+++.+.+...- +..
T Consensus 274 -------~~~~~~~-~~----~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i---g~~- 337 (538)
T KOG0252|consen 274 -------IEAESTA-ES----DVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI---GVI- 337 (538)
T ss_pred -------cchhhcc-cc----CCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh---ccC-
Confidence 0000000 00 0000111112233344333556666666777777888888888776654310 000
Q ss_pred hhhccccchhh----HHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccc----hhHHHHHH-HH
Q 017193 218 LLLEHAQDASL----YVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQP----VTLTTVLL-FG 288 (375)
Q Consensus 218 ~~~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~ 288 (375)
......... ..+.++.....+||.++..+++|++|||+..+.+.++..++.+.+....+ .....++. +.
T Consensus 338 --~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~ 415 (538)
T KOG0252|consen 338 --PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLT 415 (538)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHH
Confidence 001111111 23345555666889999999999999999999998888877766653221 11112222 22
Q ss_pred HHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHH
Q 017193 289 ARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVT-----GCHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 289 ~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
..+...|+++..+++++|.||+++|+++.|++.++|..|++++...+.++.+ ..+...+++++++++++..+..+
T Consensus 416 ~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 416 FFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred HHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence 2344568889999999999999999999999999999999999998887777 55556778888888877766665
Q ss_pred hccccccCCCCC
Q 017193 364 LFPFETKGKRID 375 (375)
Q Consensus 364 ~~~pet~~~~~~ 375 (375)
+ .||||+|++|
T Consensus 496 l-~pEtk~~~le 506 (538)
T KOG0252|consen 496 L-IPETKGKSLE 506 (538)
T ss_pred E-eecccccCHH
Confidence 4 5699999876
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=226.68 Aligned_cols=310 Identities=17% Similarity=0.205 Sum_probs=191.1
Q ss_pred hhHHHHHHHHhhhhHH--------HHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017193 2 LASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAW 72 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~--------~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~ 72 (375)
+.+++++++++++|++ .++++|+++|++.|+. +....++.|+.|+|+||+..+..+.++.+|.+++..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~ 182 (438)
T PRK09952 103 MMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVS 182 (438)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999987 5899999999999986 667789999999999999999999999999998876654
Q ss_pred Hhc--------CCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCC
Q 017193 73 MVM--------PRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETAT 144 (375)
Q Consensus 73 ~~~--------~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
.+. ..++||++|.+.+++.++.+..+..+||||+|...++|.+++
T Consensus 183 ~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------------------------- 235 (438)
T PRK09952 183 LISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------------------------- 235 (438)
T ss_pred HHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---------------------------
Confidence 432 257999999999988877666777899999874322110000
Q ss_pred CCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhcccc
Q 017193 145 PDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQ 224 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
+++. +..+.+++. ++.........+...+.+|....+.+.+..+.. +.+
T Consensus 236 -~~~~------------------~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~----------g~s 284 (438)
T PRK09952 236 -KKRI------------------PVIEALLRH--PGAFLKIIALRLCELLTMYIVTAFALNYSTQNL----------GLP 284 (438)
T ss_pred -cccC------------------CHHHHHHHc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC
Confidence 0000 001112221 112222222333344455555555443321110 011
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---ccchhHHHH-HHHHHHHHhhhhcccc
Q 017193 225 DASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQPVTLTTV-LLFGARMFANGTFAVA 300 (375)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 300 (375)
.........+.++..+++..+.++++||+|||+.+..+.++..++.++... ..+...... ..+...+......+..
T Consensus 285 ~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (438)
T PRK09952 285 RELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQ 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111223445566778889999999999999887765554443322211 112221111 1122122222334567
Q ss_pred eeeccccccccchhHHHHHHHHHHh-HHHhHHHHHHHHhhcccc-hh-HHHHHHHHHHHHHHHHHHhcccccc
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGR-IGGMVCPLVSVGLVTGCH-QT-AAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+++.+|.+|++.|+++.|+.+..++ +++.++|.+...+.+..+ .+ ..+.+.+++.+++++.. +..+||+
T Consensus 365 ~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 365 QPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred HHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 8899999999999999999988876 788999999988776432 22 33333444444444443 4456754
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=229.28 Aligned_cols=350 Identities=20% Similarity=0.296 Sum_probs=215.0
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH---HHhcC
Q 017193 4 SVAGLLSAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALA---WMVMP 76 (375)
Q Consensus 4 ~i~~~~~~~~---~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~---~~~~~ 76 (375)
.++++++.+. .+++.++++|+++|++.|.. +....++.|++|+++|++..++.+.+..+|..+++.++ .....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 191 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3455555443 35568999999999999875 56678999999999999999999999999999999988 44456
Q ss_pred CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCC
Q 017193 77 RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTP 156 (375)
Q Consensus 77 ~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (375)
..+||++|.+.+++.++.++..+++||+|+++..+++.+++++.+++.++.+.++ ... .+..+..+...
T Consensus 192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~ 260 (481)
T TIGR00879 192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED---KEL--------LDELELIDIKR 260 (481)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc---HHH--------HHHHHHHHHHH
Confidence 7799999999888777777777889999999988888887766554432211100 000 00000000000
Q ss_pred cccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHH
Q 017193 157 LLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITS 236 (375)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (375)
..+.+..+.....+...++...++..+.....++.+...+.....+.+.+.... +.+............
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~ 329 (481)
T TIGR00879 261 SIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA-----------GVSTDHAFLVSIIVG 329 (481)
T ss_pred HHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc-----------CCCchHHHHHHHHHH
Confidence 000000000011111222211122222222222222222222333333322110 111111122334455
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---h-ccc------hhHH-HHHHHHHHHHhhhhcccceeecc
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---T-HQP------VTLT-TVLLFGARMFANGTFAVACVYAP 305 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 305 (375)
+..+++.++.+++.||+|||+.+..+.++..++.+.+. . ..+ .... ....+....+..+..+..+.+.+
T Consensus 330 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
T TIGR00879 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVS 409 (481)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhh
Confidence 66788999999999999999988776655544433332 1 111 1111 11122222333344466778889
Q ss_pred ccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 306 EVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 306 El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
|.+|++.|+++.|+.+...+++++++|.+.+.+.+..+....+.+++++++++++..+++.||+|+++++
T Consensus 410 ~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 410 EIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999999999988777665544556677777777777777788999987754
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=219.81 Aligned_cols=307 Identities=18% Similarity=0.235 Sum_probs=184.9
Q ss_pred hhHHHHHHHHhhhhHH--------HHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017193 2 LASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAW 72 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~--------~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~ 72 (375)
+.+++++++++++|+. .++++|+++|++.|+. +...++++|+.|+|+||+..++.+.....|.++++.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888875 5999999999999986 677899999999999999999998888888888776654
Q ss_pred Hhc--------CCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCC
Q 017193 73 MVM--------PRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETAT 144 (375)
Q Consensus 73 ~~~--------~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
.+. +.+|||++|++.++++++.++.+..+||||++.. + +.+
T Consensus 182 ~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~--------~---------~~~-------------- 230 (432)
T PRK10406 182 VLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET--------R---------ALK-------------- 230 (432)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH--------h---------hhc--------------
Confidence 432 3679999999999998887777778999986410 0 000
Q ss_pred CCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhcccc
Q 017193 145 PDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQ 224 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
+ ..+++++++. ++.........+.....+|+...|.|.+..+.. +.+
T Consensus 231 --~-------------------~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s 277 (432)
T PRK10406 231 --E-------------------AGSLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA----------GMH 277 (432)
T ss_pred --c-------------------cccHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC
Confidence 0 0012333432 222222222333334556666666654432110 011
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh--h-cc-chhHHHHHHHHHHHHhhhhcccc
Q 017193 225 DASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL--T-HQ-PVTLTTVLLFGARMFANGTFAVA 300 (375)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (375)
.........+..+...++..+.|+++||+|||+.+....+++.+...++. . .. +......+.....+......+..
T Consensus 278 ~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
T PRK10406 278 ANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSIS 357 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112233344456677889999999999887665544333322221 1 11 12211111111111111122456
Q ss_pred eeeccccccccchhHHHHHHHHHHhH-HHhHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHhccccccCCCCC
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGRI-GGMVCPLVSVGLVTGCHQTAAIFL-LAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
+.+.+|.||++.|+++.|+++..+++ .+...|.+.. +++..+.+...++ .++..+++.+..++ .|+++|+.+
T Consensus 358 ~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~~ 431 (432)
T PRK10406 358 GILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGMR 431 (432)
T ss_pred HHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhcccccC
Confidence 77899999999999999999999886 3445777666 4444333333333 34444444444443 366677653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=202.92 Aligned_cols=282 Identities=17% Similarity=0.139 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFA 93 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll 93 (375)
+|++.++++|+++|++.|..+.....++|+.|+|+|+++.++.+.+..+|.+++++++..+.+.+|||+.|.+.++++++
T Consensus 77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA 156 (368)
T ss_pred ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 79999999999999999865555566799999999999999999999999999999988888889999999997776655
Q ss_pred H-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHH
Q 017193 94 V-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLM 172 (375)
Q Consensus 94 ~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
. ++.++++||+|++.. +..+.++. .+++++
T Consensus 157 ~~~~~~~~lp~~p~~~~---~~~~~~~~----------------------------------------------~~~~~~ 187 (368)
T TIGR00903 157 GIILVLAALPALPFQAA---EGFGFKDA----------------------------------------------VKEFGA 187 (368)
T ss_pred HHHHHHHHcCCCCCCCC---CCcchHHH----------------------------------------------HHHHHH
Confidence 4 556778999997521 10000000 012334
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 017193 173 LLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR 252 (375)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~ 252 (375)
+++++. .+..+..++.....+|++..|.|.+..+. +.+ .. ......+..+.+.+..+++.||
T Consensus 188 ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-----------g~s-~~---~~~~~~l~~~~g~~g~~~~~d~ 249 (368)
T TIGR00903 188 LAGRKD---LWIIGAILGFGVALFDNLAIWLEAALRPA-----------GLE-DI---AGDAVALAILAGLIGVAVIPDR 249 (368)
T ss_pred HHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCC-hH---HHHHHHHHHHHHHHHHHHhhHH
Confidence 444322 23344445556666778878877654321 011 11 1222334445566667889998
Q ss_pred hCch---HHHHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHH
Q 017193 253 VGRK---ISMAI-MSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGG 328 (375)
Q Consensus 253 ~gRr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~ 328 (375)
..|| +.... ..+...+.........+......+.....++..+..+..+++.+|.+|++.|+++.|+.+..+++++
T Consensus 250 ~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~ 329 (368)
T TIGR00903 250 VARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAIS 329 (368)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHH
Confidence 7553 33222 2222222222222222222222222333333444556678899999999999999999999999999
Q ss_pred hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 017193 329 MVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILL 364 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
+.+|.+.+.+.. +....+.+++...+++++.+++
T Consensus 330 ~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 330 VALALAAMLFIS--SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence 999998877663 3445667777777777776653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=201.94 Aligned_cols=317 Identities=21% Similarity=0.315 Sum_probs=214.4
Q ss_pred ChhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHH--HHhcCC
Q 017193 1 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALA--WMVMPR 77 (375)
Q Consensus 1 ~~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~--~~~~~~ 77 (375)
+++.+.+++.+++++...+.++-+++|...|.. |.+...+..|.|+++||+..++++.++++|..+.+++. ..+..+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 367899999999999999999999999999975 88899999999999999999999999999999999887 666677
Q ss_pred CchHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCC
Q 017193 78 LNWRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTP 156 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (375)
.+||..|++.++.++++ ++.++.+.|+|+=. ....+++.+.+. .| .+ ++++
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~--------GLP~ie~~~~d~----------~e--~~-~~~~------- 233 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE--------GLPPIEEYRGDP----------LE--IY-EEEK------- 233 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc--------CCCCHHHhhcCc----------hh--hh-hhhc-------
Confidence 79999999999988877 56777899999721 111111111000 00 00 0000
Q ss_pred cccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhh---hhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHH
Q 017193 157 LLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVY---YGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVF 233 (375)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (375)
++...+.+..+++.- .+ .-.+|.+.+.+.+.| |+++.|.|.+..+.. +.+..+......
T Consensus 234 ------~~~~ls~~~i~~~YV-L~-Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k----------~~s~~~a~~a~~ 295 (448)
T COG2271 234 ------ENEGLTAWQIFVKYV-LK-NKLIWLLALANVFVYVVRYGINDWGPLYLSEVK----------GFSLVKANWAIS 295 (448)
T ss_pred ------cCCCccHHHHHHHHH-Hc-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----------CCCHHHHHHHHH
Confidence 000011222222211 11 113566666777777 788888886643211 112222233344
Q ss_pred HHHhhhhhHHHHHHHHHhhh--CchHHHHHHHHH-HHHHHHHHhhc--cchhHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRV--GRKISMAIMSIL-TFIFLLPLLTH--QPVTLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~--gRr~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
+.-+++++|++++||++||+ |||......+.+ ..+++..+... .+.....++++..+++..|+..+.-..+.|..
T Consensus 296 lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~ 375 (448)
T COG2271 296 LFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFV 375 (448)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence 55678899999999999996 777665443333 33333322222 22345556677778888898888889999999
Q ss_pred cccchhHHHHHHHHHHhH-HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 017193 309 PTSLRATGAGIASAVGRI-GGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
|++.-|++.|+...++++ |+..+....+.+.+..+....++++.+.++++.+...
T Consensus 376 pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 376 PKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred cHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999 7777777666665664545555555555555554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=198.68 Aligned_cols=318 Identities=18% Similarity=0.223 Sum_probs=193.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
.+++++++++++|++.++++|+++|++.|.. +....++.|+.|+|+|++..++.+.+..+|.++++.+...+.+..+||
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 4577788888999999999999999999975 566788999999999999999999999999999988877767778999
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.|++..++.++.+......||++++...+. ++++ +.++..
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------------~~~~------------~~~~~~------------ 213 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKL---------------SGKG------------KHSQSA------------ 213 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------------hccc------------cccccc------------
Confidence 9999877666655555556788876531100 0000 000000
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
.+....+++++++++..+.........+.....++....+.|.+..+. +.+.........+..++.++
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~ 281 (426)
T PRK12307 214 -WSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-----------GFDTGVVSNLMTAAAFGTVL 281 (426)
T ss_pred -hhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHH
Confidence 000011344555544443333222222221222222333333322110 11111112222344567788
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-ccchhH-HHHHHHHHHHHhhhhcccceeeccccccccchhHHHHH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-HQPVTL-TTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGI 319 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~ 319 (375)
+.++.+++.||+|||+.+..+.+++.+..+.... ..+... ...+.+.......+..+..+.+..|.+|++.|+++.|+
T Consensus 282 g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 361 (426)
T PRK12307 282 GNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGL 361 (426)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhH
Confidence 9999999999999999887776655444333222 111111 11122222222223344556778999999999999999
Q ss_pred HHHHHhHHHhHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHHHhccccccC
Q 017193 320 ASAVGRIGGMVCPLVSVGLVTGCHQTA-AIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
.+..+++++.++|.+.+.+.+..+... ..+..++.+..+.+...+..||+.+
T Consensus 362 ~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
T PRK12307 362 IYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLK 414 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhhh
Confidence 999999999999999887776554322 2333333333333333344566643
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=196.21 Aligned_cols=303 Identities=23% Similarity=0.329 Sum_probs=191.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+|..+++.++..+....+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 3456677788899999999999999998874 566789999999999999999999999999999998887777778999
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|++.++..++. .+...++||+|++...+.+.++.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 208 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP----------------------------------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh-----------------------------------------
Confidence 9999877655544 4455678999875322111000000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
..+..++++..+.....+..++.....++....+.|.+..+. +.+...........+++.+
T Consensus 209 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~ 269 (406)
T PRK11551 209 --------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ-----------GLSRSQAGLVQIAFNIGGA 269 (406)
T ss_pred --------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCChhhhhHHHHHHHHHHH
Confidence 000111111111222223333333333444444444332211 1111111222334556778
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
++.++.+++.||+|||+.+..+.+...+....+....+........+...++..+..+..+.+.+|.+|++.|+++.|+.
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 349 (406)
T PRK11551 270 LGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA 349 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence 89999999999999999877655544444333332222222222233333333445567788999999999999999999
Q ss_pred HHHHhHHHhHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHHhc
Q 017193 321 SAVGRIGGMVCPLVSVGLVTGCHQTAAIF-LLAVVIVLSIVCILLF 365 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 365 (375)
+..+++++.++|.+.+.+.+..+.....+ ....+.+++.+..+..
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777544333333 3333333344444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=196.02 Aligned_cols=280 Identities=18% Similarity=0.258 Sum_probs=167.8
Q ss_pred hhHHHHHHHHhhhhHH--------HHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017193 2 LASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAW 72 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~--------~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~ 72 (375)
+.+++++++++++|++ .++++|+++|++.|.. +....+++|++|+++||+.+++.+....+|..+++.++.
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999987 4689999999999985 566789999999999999999999888888877776665
Q ss_pred Hh--------cCCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCC
Q 017193 73 MV--------MPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETAT 144 (375)
Q Consensus 73 ~~--------~~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
.+ .+.+|||++|+++.++.++.++.+...||++++...+ + +
T Consensus 175 ~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~----------------~-~-------------- 223 (434)
T PRK15075 175 LLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK----------------H-R-------------- 223 (434)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh----------------h-c--------------
Confidence 54 2467999999987665544444445566654321100 0 0
Q ss_pred CCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhcccc
Q 017193 145 PDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQ 224 (375)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
.+. + ..++... ++++.........+.+...++....+.|.+..+.. +.+
T Consensus 224 ~~~----------------~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~~ 272 (434)
T PRK15075 224 PSM----------------R---EIFRSLA--ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVL----------HLS 272 (434)
T ss_pred ccc----------------c---cHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC
Confidence 000 0 0011111 11122222222223334445555555554432110 011
Q ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH---hhccchh-HHHHHHHHHHHHhhhhcccc
Q 017193 225 DASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL---LTHQPVT-LTTVLLFGARMFANGTFAVA 300 (375)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 300 (375)
.........+..++.+++..+.|++.||+|||+.+..+..++....++. ....+.. ......+...++.....+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (434)
T PRK15075 273 AADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 1111222334556678889999999999999998776544433222111 1112211 11111111111212223445
Q ss_pred eeeccccccccchhHHHHHHHHHHhH-HHhHHHHHHHHhhcccc
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGRI-GGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 343 (375)
+.+.+|.+|++.|+++.|+.+.+++. ++.++|.+.+.+.+..+
T Consensus 353 ~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 57889999999999999998888876 58889998887776554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=194.55 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=183.1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC----
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP---- 76 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~---- 76 (375)
+.+++++++++++|++.+++.|+++|++.|.. +....++.|++|+|+||+..++++....+|..+++.++..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34677888889999999999999999999985 6666889999999999999999999999999999988766542
Q ss_pred --CCchHHHHHHHhHHHHHH-HHHHhcCcCCch---hhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccC
Q 017193 77 --RLNWRWLLALSSVPSFAV-LLLYGLAPETPK---YLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVI 150 (375)
Q Consensus 77 --~~~WR~~f~~~~i~~ll~-~~~~~~~pESp~---~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
..|||+.|.+.++++++. .+.++++||+|+ |+.. ++++..++..+.+..+.+ .++..
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~-----~~~~~~~~~~~~~~~~~~-----------~~~~~- 224 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE-----EDKKALKEMIDNDQLTLE-----------QPEGA- 224 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH-----HHHHHHHHHHHhcccccc-----------ccccc-
Confidence 469999999998887765 456677899995 3322 121111111111100000 00000
Q ss_pred CCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHH
Q 017193 151 IPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYV 230 (375)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
. ++ +.......++.+++++ .+.....++.....++++..|.|.+..+.. .+.+......
T Consensus 225 ~-~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~~~~~ 283 (412)
T TIGR02332 225 F-AH-------AAMPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNIMIGL 283 (412)
T ss_pred c-cc-------ccccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHHHhHH
Confidence 0 00 0000011233333332 222333334444556666666654432200 0011111122
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhCchHH-HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017193 231 NVFITSLAELPGLLLSAVIVDRVGRKIS-MAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~l~d~~gRr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
......++.++|.++.+++.||++||+. .....+...+.........+............+......+..+....|.+|
T Consensus 284 ~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 363 (412)
T TIGR02332 284 LAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS 363 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccc
Confidence 2345567778899999999999997764 333332322222211122222111111111111111222345567789999
Q ss_pred ccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchh
Q 017193 310 TSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQT 345 (375)
Q Consensus 310 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (375)
++.|+++.|+.+..++++++++|.+.+.+.+..+.+
T Consensus 364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 364 LQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 999999999999999999999999988777765433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=188.47 Aligned_cols=303 Identities=24% Similarity=0.338 Sum_probs=192.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|++.|++.|.. +...+++.|+.|+++|++..++.+....+|..+++.++..+.+..+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 3456667778889999999999999999874 667889999999999999999999999999999999887777888999
Q ss_pred HHHHHHhHHHH-HHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSF-AVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~l-l~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.+.+.++..+ ...+...++||+|++...+ +.+++.+..++....+.++. + .+.++++ +
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~---~------- 231 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-------Q--SALPEQK---A------- 231 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-------c--ccccccc---c-------
Confidence 99998864444 4455667799999887655 44555444444332211100 0 0000000 0
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
+.+......+.+++++..+.....+...+.....++....+.|.+.... +.+.........+..++.+
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~ 299 (398)
T TIGR00895 232 -TQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL-----------GFSLSLAATGGALFNFGGV 299 (398)
T ss_pred -ccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHH
Confidence 0000011223344444445555555444444455555555555332210 1111111222345567778
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
++.++.+++.||+|||+......+.+...........+........+...++..+..+..+.+.+|.+|++.|+++.|+.
T Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 379 (398)
T TIGR00895 300 IGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA 379 (398)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999999999995544333333222222221222222223333333444445567788999999999999999999
Q ss_pred HHHHhHHHhHHHHHHHH
Q 017193 321 SAVGRIGGMVCPLVSVG 337 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (375)
+.++++++.++|.+.+.
T Consensus 380 ~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 380 IGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHhHHh
Confidence 99999999999987764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=189.93 Aligned_cols=302 Identities=18% Similarity=0.258 Sum_probs=184.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN-- 79 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-- 79 (375)
..+++++++++++++.+++.|++.|++.|+. +....++.|++|+++|++..++.+....+|..+++.++..+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4567778888899999999999999999875 6677899999999999999999999999999999988777665544
Q ss_pred hHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 80 WRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
||+.|.+.+++.++.++....+||+|++...+.+.++.++..++..+ ++ + . .++.. +
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~---~-------~~~~~-----~---- 223 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GE-H---R-------IANIV-----M---- 223 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cc-h---h-------hhhhh-----h----
Confidence 99999998888777777777899998875433222222111111110 00 0 0 00000 0
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
.. ..+.+... .+.++...............+++...+.|.+..+. .+.+............++.
T Consensus 224 --~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~s~~~~~~~~~~~~~~~ 287 (405)
T TIGR00891 224 --TL---AAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----------LGLSPHTVANIVVFSNIGA 287 (405)
T ss_pred --hh---hHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----------hCCCHHHHHHHHHHHHHHH
Confidence 00 00000000 01111111111111111222222222222221110 0111111122233456777
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL-LTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
+++.++.+++.||+|||+.+..+.+.+.+..+.. ....+........+....+..+.++....+.+|.+|++.|+++.|
T Consensus 288 ~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 367 (405)
T TIGR00891 288 IVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLG 367 (405)
T ss_pred HHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhh
Confidence 8899999999999999998877665543322222 222222222222233333344455667788899999999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
+.+.++++++.++|.+.+.+.+..+
T Consensus 368 ~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 368 FTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988877655
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=191.65 Aligned_cols=325 Identities=16% Similarity=0.160 Sum_probs=192.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
.+++.++.++++|++.+++.|++.|++.|.. +....++.|+.|+++||+.+++.+....+|..+++.+...+.+.++||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 4567778888999999999999999999864 666788999999999999999999999999999998887777788999
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|.+.+++.++. ++..+++||+|++.......++.+ + ..+.+++. ++
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------------------~-~~~~~~~~---~~------ 226 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH---------------------D-ALELAQQQ---EG------ 226 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc---------------------c-ccccchhc---cc------
Confidence 9999988776654 445567899886431100000000 0 00000000 00
Q ss_pred cccccchhhhHHhhhhhhH--HHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 161 TVNKSGSSSFLMLLSTELI--RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
.+ .++++.++...+ +..+......+.....++++..|.|.+..+.. +.+.........+..++
T Consensus 227 --~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~a~~~~~~~~~~ 291 (434)
T PRK11663 227 --AG---LSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETL----------GVDLVTANSAVSMFELG 291 (434)
T ss_pred --cC---CChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHH
Confidence 00 011111111111 11222222223333444555555544321110 11111111223344567
Q ss_pred hhhHHHHHHHHHhhh--Cc-hHHHHHHHHHH--HHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 239 ELPGLLLSAVIVDRV--GR-KISMAIMSILT--FIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~--gR-r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
.+++.++.+++.||+ +| |.......+.. ....+......+........+...++..+.......+.+|.+|++.|
T Consensus 292 ~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (434)
T PRK11663 292 GFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAA 371 (434)
T ss_pred HHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhH
Confidence 788999999999998 33 33222211111 11111111111221111222222222223333344567899999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
+++.|+.+..++++++++|.+.+.+.+..+....+...+++.+++++..+...++.++++
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE 431 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 999999999999999999999998888666555666666666666666666666766654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=184.63 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=185.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++.++++|++.++++|++.|++.|.. +....++.|++|+|+|++..++.+....+|.++++.++..+.+..+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 148 (399)
T TIGR00893 69 WGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ 148 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence 4566777888899999999999999998874 667889999999999999999999999999999999988777788999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|.+.++..++.. +.....||+|+... ...+|.++. +. + + ...+ .+++. . +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~----~-~------~~~~----~~~~~-~-~------- 201 (399)
T TIGR00893 149 WAFIIEGVLGIIWGVLWLKFIPDPPQKAK--WLTEEEKYI-VV----G-G------LLAE----QQGKG-P-S------- 201 (399)
T ss_pred HHHHHHHHHHHHHHHHhhheecCCCCccc--cCCHHHHhh-cc----h-h------hccc----ccccc-c-c-------
Confidence 99999887776654 34555777764211 111111100 00 0 0 0000 00000 0 0
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
+....+.++.++++.. .......+.....++....+.|.+..+.. +.+.........+..+..+
T Consensus 202 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 265 (399)
T TIGR00893 202 ---TPKKYQIKELLKDRRV---WGLALGQFLVNIGLGFFLTWFPTYLVQER----------GLSILEAGFMASLPGIVGF 265 (399)
T ss_pred ---CCCccchHHHhcCHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cccHHHhhHHHHHHHHHHH
Confidence 0001122333333221 12222222223333333333332221100 1111111222334456678
Q ss_pred hHHHHHHHHHhhhCchH--HHHHHH--HHHHH--HHHHHhhc-cchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 241 PGLLLSAVIVDRVGRKI--SMAIMS--ILTFI--FLLPLLTH-QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~--~~~~~~--~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
++.++.+++.||++||+ ...... ..+.+ ........ .+.............+..+..+..+.+.+|.+|++.|
T Consensus 266 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (399)
T TIGR00893 266 IGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIA 345 (399)
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHH
Confidence 89999999999999996 111111 11111 11111111 1121222222222233334567788999999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHH
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCI 362 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 362 (375)
+++.|+.+.+.++++.++|.+.+.+.+..+ ....+.+.+++.+++.+..
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877665 3344445555555544443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=184.73 Aligned_cols=310 Identities=14% Similarity=0.115 Sum_probs=175.6
Q ss_pred hhhhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHH
Q 017193 12 FSLNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR---LNWRWLLALS 87 (375)
Q Consensus 12 ~~~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~WR~~f~~~ 87 (375)
+++|++.++++|+++|++.|. .+....++.|+.|+++||++.++.+...++|.++++.+....... .+||..|.+.
T Consensus 118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~ 197 (467)
T PRK09556 118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP 197 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence 358999999999999999886 467778999999999999999999999999999988776543332 2699999888
Q ss_pred hHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccc
Q 017193 88 SVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSG 166 (375)
Q Consensus 88 ~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (375)
+++.++.. +.+.+.+|+|+... ..++ ++.. ++. . +.+++. .+++ +.. .
T Consensus 198 g~~~~~~~i~~~~~~~~~p~~~~---~~~~-~~~~------~~~-------~-----~~~~~~--~~~~------~~~-~ 246 (467)
T PRK09556 198 SIIALIIGFIGLRYGSDSPEELG---WGKA-EEIF------GEP-------I-----SEEDKE--TEST------DMT-K 246 (467)
T ss_pred HHHHHHHHHHHHHhCCCChhhcC---CCCh-hhcc------cCc-------c-----chhhhc--cccc------cCc-H
Confidence 87776653 34555677775211 0011 0000 000 0 000000 0000 000 0
Q ss_pred hhhhH-HhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHH
Q 017193 167 SSSFL-MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLL 245 (375)
Q Consensus 167 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 245 (375)
...+. ..++.+ ..+......+.....+++...|.|.+..+.. +.+.........+..++.+++.++
T Consensus 247 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~ 313 (467)
T PRK09556 247 WQIFVEYVLKNP---VIWLLCFANIFLYIVRIGIDNWSPVYAFQEL----------GFSKEDAINTFTLFEIGALVGSLL 313 (467)
T ss_pred HHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 122221 1222333333344445566666664322110 111111122233445677899999
Q ss_pred HHHHHhhhCchHHHHHHHHHHHHHH--HHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHH
Q 017193 246 SAVIVDRVGRKISMAIMSILTFIFL--LPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAV 323 (375)
Q Consensus 246 ~~~l~d~~gRr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~ 323 (375)
.|+++||+|||+............. .......+.....+..+..+++..+..........|.+|++.|+++.|+.+..
T Consensus 314 ~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 314 WGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 9999999999887654333222211 11111222222222233333232333333345667999999999999999999
Q ss_pred HhH-HHhHHHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 324 GRI-GGMVCPLVSVGLVT------------GCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 324 ~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+++ +++++|.+.+.+.+ ..+....+.+++++.+++.+..+++
T Consensus 394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 997 66899999988887 2333344445555555555444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=179.50 Aligned_cols=314 Identities=16% Similarity=0.264 Sum_probs=184.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++.++++|++.++++|++.|++.|+. +....++.|..|+++|++..+.......+|..+++.+...+.+.++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4567777888899999999999999998875 566788999999999999999999999999999999888888889999
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.|.+..++.++.++....+||++++...+++.++.++..+.....+ + +. ....
T Consensus 175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~---------~~~~ 228 (496)
T PRK03893 175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGE-H----------------RI---------INIL 228 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcch-h----------------HH---------HHHH
Confidence 99998777766666666778998876433222211111111100000 0 00 0000
Q ss_pred ccccchhhhHHhh----------------------------hhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhc
Q 017193 162 VNKSGSSSFLMLL----------------------------STELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARC 213 (375)
Q Consensus 162 ~~~~~~~~~~~l~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
............+ +.+.+..........+......+....+.|.+..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~--- 305 (496)
T PRK03893 229 LTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD--- 305 (496)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence 0000000000000 000000000011111111111112223333322110
Q ss_pred ccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc-cch-hHHHHHHHHHHH
Q 017193 214 GSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH-QPV-TLTTVLLFGARM 291 (375)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 291 (375)
.+.+............++.+++.++.+++.||+|||+.+..+.++..+..+..... ... .......+....
T Consensus 306 -------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (496)
T PRK03893 306 -------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM 378 (496)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 01111122222344566778899999999999999998777665544433322221 122 111222222223
Q ss_pred HhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHH
Q 017193 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLA 352 (375)
Q Consensus 292 ~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (375)
...+..+....+.+|.+|++.|+++.|+.+..+.+++.++|.+.+.+.+..+....+...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 3334445566788999999999999999999999999999999888777665444443433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-20 Score=171.59 Aligned_cols=293 Identities=15% Similarity=0.109 Sum_probs=179.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++++++++++|++.++++|+++|++.+.. +...+++.|+.|+++|++..++.+...++|..+++.++..+.+..+||
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~ 163 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR 163 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence 4567788889999999999999999998864 666789999999999999999999999999999999888777778999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|.+.++.+++.. .....+||.|+. + ++.
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~------------------------------------------- 194 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPSE-----H-SGS------------------------------------------- 194 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC-----C-cch-------------------------------------------
Confidence 99999887776653 344456765430 0 000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHh-hhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILL-TSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
.++.++.++++..+...... +.....++....+ .+.+.+. .+.+...........+++.
T Consensus 195 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~-----------~g~s~~~~~~~~~~~~~~~ 254 (390)
T PRK03545 195 ------LKSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQQV-----------AGLSENFATLLLLLFGGAG 254 (390)
T ss_pred ------HHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-----------cCCCccHHHHHHHHHHHHH
Confidence 00111223322222111111 1111122222222 2222110 0111111122233455677
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHH
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGI 319 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~ 319 (375)
+++..+.+++.||.+||.......+.............+........+...+...+.......+..|..| +.|+++.|+
T Consensus 255 ~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 333 (390)
T PRK03545 255 IIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMAL 333 (390)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHH
Confidence 8899999999999998876543333222222211222222222222222222222222334456678877 578999999
Q ss_pred HHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 320 ASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
.+...+++..++|.+.+.+.+..+....+...+.+.++++++.+..
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887765566666666666666555544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=175.53 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=171.1
Q ss_pred hHHHHHHHHhhhhHH--------HHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017193 3 ASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWM 73 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~--------~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~ 73 (375)
..+++++++++++++ .++++|+++|++.|.. +....++.|+.|+++|++..+..+.+..+|.++++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 75 MGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred HHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888875 4889999999999874 6678899999999999999999999999999998877654
Q ss_pred hc--------CCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCC
Q 017193 74 VM--------PRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATP 145 (375)
Q Consensus 74 ~~--------~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 145 (375)
.. +.++||++|.+.++..++..+....+||+|++...+ +++
T Consensus 155 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--------------- 203 (394)
T TIGR00883 155 LSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ----------------EKH--------------- 203 (394)
T ss_pred HHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH----------------hcc---------------
Confidence 32 357999999998877776666666788887542100 000
Q ss_pred CcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccc
Q 017193 146 DEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQD 225 (375)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
++.. .+.++.++++. +.........+.....++....+.|.+.... .+.+.
T Consensus 204 ~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~ 254 (394)
T TIGR00883 204 KKKR------------------GPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQT----------LGLSA 254 (394)
T ss_pred cccc------------------CCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCh
Confidence 0000 01112222221 1222222223333333444444444332110 00111
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHH--HHHhh-c-cchhHHHHHHHHHHHHhhhhcccce
Q 017193 226 ASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFL--LPLLT-H-QPVTLTTVLLFGARMFANGTFAVAC 301 (375)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (375)
...........+..+++..+.+++.||+|||+.+.....+..+.. ..... . .+...................+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (394)
T TIGR00883 255 NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMG 334 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHH
Confidence 111222334456677888899999999999997765443333222 11111 1 2222222222222222233446677
Q ss_pred eeccccccccchhHHHHHHHHHH-hHHHhHHHHHHHHhhcccc
Q 017193 302 VYAPEVYPTSLRATGAGIASAVG-RIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 302 ~~~~El~P~~~R~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 343 (375)
.+.+|.+|++.|+++.++.+..+ .+++.++|.+.+.+.+..+
T Consensus 335 ~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 335 SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 89999999999999999876665 4677799998887777654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=174.06 Aligned_cols=324 Identities=17% Similarity=0.191 Sum_probs=176.4
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHH-HHHHHHHHhcCC
Q 017193 4 SVAGLLSAFS----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTI-FEAALAWMVMPR 77 (375)
Q Consensus 4 ~i~~~~~~~~----~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~ 77 (375)
+++.++.+++ .+++.+++.|++.|++.|.. +.....+.|+.|+++||+..++.+.+..+|.. .++++.......
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4455555554 37888999999999998875 55667788999999999999999999988864 444433333234
Q ss_pred CchHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCC
Q 017193 78 LNWRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTP 156 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (375)
.+||+.|++.+++.++. ++..+++||+|+... ..++++ .+++. + .+.+++. . ++
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~-----~~~~~----~---------~~~~~~~-~-~~-- 238 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCG---LPPIEE-----YKNDY----P---------DDYNEKH-E-QE-- 238 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC---CCChhh-----hhhcc----c---------ccccccc-C-CC--
Confidence 59999999988776664 556677899986421 111110 00000 0 0000000 0 00
Q ss_pred cccccccccchhhh-HHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHH
Q 017193 157 LLSSTVNKSGSSSF-LMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235 (375)
Q Consensus 157 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (375)
++....+ +..++++. .+...+..+.....+++...+.|.+..+.. +.+.........+.
T Consensus 239 -------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~----------g~s~~~~~~~~~~~ 298 (452)
T PRK11273 239 -------LTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLY 298 (452)
T ss_pred -------ccHHHHHHHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHH
Confidence 0000001 11222221 111222222222333455555554432110 00101111222344
Q ss_pred HhhhhhHHHHHHHHHhhh--CchHHHH-HHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 236 SLAELPGLLLSAVIVDRV--GRKISMA-IMSILTFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~--gRr~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
.++.+++.+++|+++||+ |||.... ....+..+....+.. ..+.....+..+.......+......++..|.+|+
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK 378 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh
Confidence 566788999999999999 5554322 222211111111111 11222222222222222223223334567899999
Q ss_pred cchhHHHHHHHHHHhHHHhH-HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH-hccccccCC
Q 017193 311 SLRATGAGIASAVGRIGGMV-CPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCIL-LFPFETKGK 372 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~~ 372 (375)
+.|+++.|+.+..+++++.+ +|.+.+.+.+..+....+.+.+++++++++... +..+|+|++
T Consensus 379 ~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
T PRK11273 379 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442 (452)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999998765 688888777766655566566666666655444 446787764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=171.88 Aligned_cols=301 Identities=16% Similarity=0.078 Sum_probs=188.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHH
Q 017193 13 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPS 91 (375)
Q Consensus 13 ~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ 91 (375)
.++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+|..+++.++..+.+..+||+.+.+.++..
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~ 186 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT 186 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467889999999999987754 5567788999999999999999999999999999998877776778999999888777
Q ss_pred HHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhH
Q 017193 92 FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFL 171 (375)
Q Consensus 92 ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
++..+....+||+|+... .+.++ .+ + ..+.++
T Consensus 187 ~~~~~~~~~l~~~~~~~~--~~~~~----~~---------------------------------------~---~~~~~~ 218 (417)
T PRK10489 187 FITLLPLLRLPALPPPPQ--PREHP----LR---------------------------------------S---LLAGFR 218 (417)
T ss_pred HHHHHHHHhCCCCCCCCc--ccccc----hH---------------------------------------H---HHHHHH
Confidence 666666667787653210 00000 00 0 001122
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHh
Q 017193 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVD 251 (375)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d 251 (375)
..++++..+...+..+. ... ..+...+.|.+..+. .+.+............++.+++.++.+++.|
T Consensus 219 ~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~ 284 (417)
T PRK10489 219 FLLASPVVGGIALLGGL---LTM-ASAVRVLYPALADEV----------WQMGAAQIGLLYAAVPLGAALGALTSGWLAH 284 (417)
T ss_pred HHHcChHHHHHHHHHHH---HHH-HHhHHHhhHHHHHhc----------cCCChhHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23333332222221111 111 122223333222110 0111111112223445667788889999999
Q ss_pred hhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHH
Q 017193 252 RVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVC 331 (375)
Q Consensus 252 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~ 331 (375)
|.++|+.+..+.++..+..+.+....+........+..........+...++..|..|++.|+++.|+.+...++++.++
T Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 285 SARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHH
Confidence 97777666665554444433333333222222222222222222234456788999999999999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 017193 332 PLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRID 375 (375)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 375 (375)
|.+.+.+.+..+....+.+++++..+.+++.+...||+|++++|
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999888766665666777777777777777778899988764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-19 Score=160.34 Aligned_cols=295 Identities=21% Similarity=0.262 Sum_probs=186.2
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
++.++++++++++||++++++|++.|++.|.+ +....+..+.+||++|+++.+....+..++.+++.+++.++.+.+||
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 46789999999999999999999999999986 56778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
|..|.+-+..+++. +..+..+| |+-. ++ +..
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------~~---------------~~~---------- 198 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSEI---------------------SG---------------SLP---------- 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------CC---------------CCC----------
Confidence 99999988887776 44666788 4200 00 000
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
....+...+++++.....+.....+++-.+.-| .+..|.+.+. .+.+....-...++.+++.
T Consensus 199 -----~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~f--tYi~P~L~~v-----------~g~s~~~vs~~Ll~~Gv~~ 260 (394)
T COG2814 199 -----GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALY--TYIRPFLESV-----------AGFSVSAVSLVLLAFGIAG 260 (394)
T ss_pred -----cchhHHHHHhcCchHHHHHHHHHHHHcchhhhH--HhHHHHHHHc-----------cCCCHhHHHHHHHHHHHHH
Confidence 000011223333322222222222222221111 1223333211 0112223334456778889
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
++|+.++|.+.|| +.|+.+.....+.....+.+.. ..+........+...+...........-.+| .-++.+..+.+
T Consensus 261 ~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~s 338 (394)
T COG2814 261 FIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGS 338 (394)
T ss_pred HHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHH
Confidence 9999999999999 7777776654444444333332 2223333333333222211111222333445 33577999999
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILL 364 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
+.....+++..++..+.+..++..+.....+.-+.+.+++.++...
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888755444444545455455444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-19 Score=164.70 Aligned_cols=300 Identities=15% Similarity=0.118 Sum_probs=182.1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-LN 79 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~ 79 (375)
+.+++++++++++|++.+++.|+++|++.|.. +....++.|+.| ++|+++++.+..+...|..+++.++..+.++ .+
T Consensus 83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~ 161 (393)
T PRK09705 83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET 161 (393)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45688889999999999999999999999974 455677888887 7899999999999888999888877665555 48
Q ss_pred hHHHHHHHhHHHHHHHHHHhcCc-CCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcc
Q 017193 80 WRWLLALSSVPSFAVLLLYGLAP-ETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL 158 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~~p-ESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
||+.+.+.+++.++.++.+.... +.|+ ++ .+++. +.
T Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~-------------~~~~~---~~---- 198 (393)
T PRK09705 162 WYQTLAWWALPAVVALFAWWWQSAREVA-----------------------SS-------------HKTTT---TP---- 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------cc-------------cCCCc---CC----
Confidence 99988776665544433322111 1110 00 00000 00
Q ss_pred cccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 159 SSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
...+.+++ .+...+..+.....+++...+.|.+..+. + .+.........+.+++
T Consensus 199 -----------~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~lp~~l~~~---g--------~s~~~ag~~~~~~~i~ 252 (393)
T PRK09705 199 -----------VRVVFTPR----AWTLGVYFGLINGGYASLIAWLPAFYIEI---G--------ASAQYSGSLLALMTLG 252 (393)
T ss_pred -----------cccccCHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--------CChhhhhHHHHHHHHH
Confidence 00011111 11122222223445555555555433210 0 1111112223455677
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHhhhhcccceeeccccc-cccchhHH
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-HQPVTLTTVLLFGARMFANGTFAVACVYAPEVY-PTSLRATG 316 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~-P~~~R~~~ 316 (375)
.++|.++.+++.||.+||+....+..+..+....+.. ..+.... ..+.......+.++.......|.+ |++.|++.
T Consensus 253 ~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~ 330 (393)
T PRK09705 253 QAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKL 330 (393)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHH
Confidence 8899999999999999998877765554443332221 2111111 111111222223344444455666 56889999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHHHhccccccCCC
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQT-AAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
.|+.+.++++++.++|.+.+.+.+..+.+ ..+.+.++++++..++.+.+.|||.+|.
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999888866533 3344455555666667677899998864
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=169.23 Aligned_cols=322 Identities=17% Similarity=0.214 Sum_probs=177.3
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH-hcCC
Q 017193 4 SVAGLLSAFS----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWM-VMPR 77 (375)
Q Consensus 4 ~i~~~~~~~~----~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~-~~~~ 77 (375)
+++.++.++. ++++.+.+.|++.|++.|.. +....++.|+.|+++||+..++.+....+|..+++.+... ....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 3444444443 46778899999999999875 5567788999999999999999999999999888766443 3334
Q ss_pred CchHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCC
Q 017193 78 LNWRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTP 156 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (375)
.+||..|++.++.+++. ++..+++||+|+.... +..+ +.+ ++. + .+..+ +.+.
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~------~~~--~~~--~---------~~~~~---~~~~-- 235 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL--PPIE------EYR--NDY--P---------DDYNE---KAEQ-- 235 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC--CCch------hcc--ccc--c---------ccccc---cccc--
Confidence 68999999988877664 4556678998864210 0000 000 000 0 00000 0000
Q ss_pred cccccccccchhhh-HHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHH
Q 017193 157 LLSSTVNKSGSSSF-LMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235 (375)
Q Consensus 157 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (375)
+.+ ....+ +..++++.. +......+.....+++...+.|.+..+. .+.+.........+.
T Consensus 236 -----~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~~~~~~~ 296 (438)
T TIGR00712 236 -----ELT-AKEIFMQYVLPNKLL---WYIAIANVFVYLLRYGVLDWSPTYLKEV----------KHFALDKSSWAYFLY 296 (438)
T ss_pred -----ccc-hHHHHHHHHccCchH---HHHHHHHHHHHHHHHHHHHhHHHHHHHc----------cCCChhhHHHHHHHH
Confidence 000 00001 112222211 1111111222233344444444332210 011111112223345
Q ss_pred HhhhhhHHHHHHHHHhhhCchH-HHHHHHHH--HHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 236 SLAELPGLLLSAVIVDRVGRKI-SMAIMSIL--TFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~-~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
.+..+++.++++++.||.+||+ ........ ..+....+.. ..+........+...+...+..........|.+|+
T Consensus 297 ~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (438)
T TIGR00712 297 EYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK 376 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh
Confidence 5667889999999999995432 22211111 1111111111 11222221222222222222222223457799999
Q ss_pred cchhHHHHHHHHHHhHHH-hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 311 SLRATGAGIASAVGRIGG-MVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+.|+++.|+.+..+++++ .++|.+.+.+.+..+....+.+.+++.+++.+..+++.||.|
T Consensus 377 ~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 377 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999875 578999888777665555666666667777777777788865
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-19 Score=164.72 Aligned_cols=290 Identities=17% Similarity=0.144 Sum_probs=172.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
+..++.+++++++|++.++++|++.|++.|.. +....++.|+.| |+|+++.++......+|.++++++.....+..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (377)
T TIGR00890 77 LYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGV 155 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccH
Confidence 34677888899999999999999999999864 455677888887 5799999999999999988766655555567799
Q ss_pred HHHHHHHhHHHHHHHHH-HhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAVLLL-YGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~-~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
|+.|.+.++..++..+. ..+++|.|+- + ++++ .+.+++
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------~-----------~~~~-----------~~~~~~----------- 194 (377)
T TIGR00890 156 PAAFIYMGIIFLLVIVLGAFLIGYPPGQ--------L-----------IKTN-----------IEVSVK----------- 194 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCchh--------c-----------cccC-----------cccchh-----------
Confidence 99999988877766443 4445554420 0 0000 000000
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhH-HHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGV-ILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
..+.++.++++.... .....+...+.+... ..+.++.. + .+.++........+..+.
T Consensus 195 -------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~ 252 (377)
T TIGR00890 195 -------DYTVWEMLRTPQFWV---LYLSFFLNAVSGLLLIGLYKPYGQ-S-----------LGLSDGFLVLAVSISSIF 252 (377)
T ss_pred -------hhhHHHHHcCccHHH---HHHHHHHHhHHHHHHHHHHHHHHH-H-----------cCCCHHHHHHHHHHHHHH
Confidence 001122233222111 111111111111111 11122111 1 001111112223455667
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccc-h-hHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQP-V-TLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
.+++.++.+++.||+|||+.+..+.++..+.........+ . .......+..........+....+.+|.+|++.|+++
T Consensus 253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 332 (377)
T TIGR00890 253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAAN 332 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhH
Confidence 7889999999999999999887766655554443332221 1 1111112222222223334556788999999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHH
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVI 355 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (375)
.|+.+....+++.++|.+.+.+.+..+....+.+.+++.
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 999999999999999999887776655444444444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=167.96 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=164.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh----cC--
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV----MP-- 76 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~----~~-- 76 (375)
.+++.+++++++|+..+++.|++.|++.+.......++.|++|+++||++.++.+....+|..+++.+...+ ..
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677788889999999999999999876544556789999999999999998776666666554443222 11
Q ss_pred ---CCchHHHHHHHhHHHHHHHHHHhcCc-CCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCC
Q 017193 77 ---RLNWRWLLALSSVPSFAVLLLYGLAP-ETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIP 152 (375)
Q Consensus 77 ---~~~WR~~f~~~~i~~ll~~~~~~~~p-ESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (375)
..+||+.|.+.+++.++..+...+++ |.|+ ++.+|.+ + +. +.
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~-~~----------------~~----- 236 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K-SG----------------TM----- 236 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h-cC----------------cc-----
Confidence 25899999998888776654444444 4443 1111100 0 00 00
Q ss_pred CCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHH
Q 017193 153 EHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNV 232 (375)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (375)
++ .+....++..++.+ +.+..+..++.....++....+.|.+..+. .+.+........
T Consensus 237 ~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~a~~~~ 294 (476)
T PLN00028 237 PK---------DSFSKVLRYGVTNY---RTWILALTYGYSFGVELTMDNIIAEYFYDR----------FGLSLETAGAIA 294 (476)
T ss_pred cc---------ccHHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHhHHHHHHHHh----------cCCCHHHHHHHH
Confidence 00 00001122222211 222223222222233333333333322110 011111112223
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchH-------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKI-------SMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAP 305 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (375)
.+..++.+++.+++|+++||++||+ .......+..+..+.+....+........+...++.....+..+.+.+
T Consensus 295 ~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 374 (476)
T PLN00028 295 ASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP 374 (476)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc
Confidence 4456777889999999999998752 222222222222222222222222222222222222233455677788
Q ss_pred ccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhc
Q 017193 306 EVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 306 El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
|+.| +.|+++.|+.+..++++++++|.+.. ....+ ....+++.+++.++++++.++.
T Consensus 375 ~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 375 FVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred ccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8765 68999999999988899988887654 22222 3345556666666666555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-18 Score=161.81 Aligned_cols=279 Identities=15% Similarity=0.066 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHH
Q 017193 15 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFA 93 (375)
Q Consensus 15 ~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll 93 (375)
+++.+++.|+++|++.|.. +....++.|+.|+++|+++.++.+.....|.++++.++..+.+..+||..+.+..+.+++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5778999999999999874 666788899999999999999999999999999999888777788999998887666554
Q ss_pred HHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHh
Q 017193 94 VLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLML 173 (375)
Q Consensus 94 ~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (375)
.++.....||+++- +++ + .++++.
T Consensus 191 ~~~~~~~~~~~~~~---~~~-----------------------------------~------------------~~~~~~ 214 (399)
T PRK05122 191 GLLLARPRPAVPPV---KGE-----------------------------------R------------------LPFRRV 214 (399)
T ss_pred HHHHHhcCCCCCCC---Ccc-----------------------------------c------------------hhHHHH
Confidence 44333323332210 000 0 000111
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 017193 174 LSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRV 253 (375)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~ 253 (375)
+++ .++..... ....+.+.....+.+.+..+. +..... .......++.+++.++.+++.||+
T Consensus 215 ~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~ 276 (399)
T PRK05122 215 LGR-VWPYGMGL----ALASIGFGTIATFITLYYAAR-----------GWDGAA--LALTLFGVAFVGARLLFGNLINRL 276 (399)
T ss_pred HHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHc-----------ccccch--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11111101 011111222222222111110 001111 112234566678889999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHH
Q 017193 254 GRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPL 333 (375)
Q Consensus 254 gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~ 333 (375)
|||+.+..+..+..+.........+.+......+...++....++.......|.+|++.|+++.|+.+....+++.++|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 277 GGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776655554444333333333222222222222222233444456678999999999999999999999888888
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHhccc
Q 017193 334 VSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 367 (375)
+.+.+.+..+....+.+.+++.+++.+..+++.+
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 357 LAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8877766655445555666666666655555543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=167.02 Aligned_cols=312 Identities=15% Similarity=0.178 Sum_probs=176.2
Q ss_pred HHHHHHHHhh--hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Q 017193 4 SVAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-LN 79 (375)
Q Consensus 4 ~i~~~~~~~~--~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~ 79 (375)
+++++++.++ .++..+++.|+++|++.|.. +....++.|+.|+++|++..++...+..+|.++++++...+... .+
T Consensus 117 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 117 SVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3444554333 46788999999999999985 67788999999999999999999999999999999988777777 49
Q ss_pred hHHHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcc
Q 017193 80 WRWLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL 158 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
||++|++.++++++..+ .+.+.+|+|+... +.++.++ +...+ . . +++++..
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~--~~i~~-~-~---------------~~~~~~~------ 248 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP---CISKFEK--KYINS-S-L---------------QGQKGST------ 248 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHHHhcCCcccCC---CCCHHHH--HHHHh-h-c---------------ccccCCC------
Confidence 99999999888877654 4445678886321 1111111 11110 0 0 0000000
Q ss_pred cccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 159 SSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
+. ...+++.++.+. .+......+.....++....|.|.+..+.. +.+.........+..+.
T Consensus 249 ---~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~----------g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 249 ---RQ---SLPIKAIPKSLP---VWAIWFAIFGHFWLYTILPTYLPTFISWVL----------RVSGKENGLLSSLPYLF 309 (465)
T ss_pred ---CC---CCCHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CcChHHhHHHHHHHHHH
Confidence 00 012334443322 222333334444445555555554432110 01111111222344566
Q ss_pred hhhHHHHHHHHHhhhCchHH--------HHHHHHH--HHHHHHHHhh-ccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 239 ELPGLLLSAVIVDRVGRKIS--------MAIMSIL--TFIFLLPLLT-HQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~--------~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.+++.+++|++.||++||+. +..+... ..++.+.... ..+......+......+..+..+..+....|.
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 389 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence 77888999999999764421 1111111 1111111111 11222222222222222222334455666788
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhccc--chh-HHHHHHHHHHHHHHHHHH
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGC--HQT-AAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~ 363 (375)
.|. .++.+.|+.+..+.++++++|.+.+.+.+.. +.+ ..+.+.++..+++.++..
T Consensus 390 ~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 390 APR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 876 8999999999999999999999988766532 322 344455555555554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-19 Score=165.01 Aligned_cols=292 Identities=13% Similarity=0.154 Sum_probs=175.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-cCCCch
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV-MPRLNW 80 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~W 80 (375)
..++++++++++|++.+++.|++.|++.|.. +....++.|+.|+++|++..+..+....+|..+++.+...+ ....+|
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4566777888899999999999999999864 56678889999999999999988888888888887765544 345799
Q ss_pred HHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 81 RWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
|+.|.+.+++.++..+..++ .+.|+. ++. ++ ++++ .+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~-------~~~------------~~--------------~~~~--~~------- 198 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL-------GKH------------AP--------------KADK--PV------- 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc-------ccc------------Cc--------------cccC--cc-------
Confidence 99999888777665443332 233320 000 00 0000 00
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
.+ ....+.........+.....+++...|.|.+..+.. +.+............++..
T Consensus 199 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ 255 (394)
T PRK03699 199 --AK-----------EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKF----------GMSLEDAGNLVSNFWMAYM 255 (394)
T ss_pred --cc-----------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCChHHhhHHHHHHHHHHH
Confidence 00 000111222222222233344555555554332110 0011011111123345667
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
+|.++.+++.||++||+.+.....++.+....+....+........+...++..+.++....+..|..|.+ +++..+..
T Consensus 256 ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 334 (394)
T PRK03699 256 VGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFI 334 (394)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHH
Confidence 89999999999999999877665555443333333333322222233333333344555666777877755 67888999
Q ss_pred HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 017193 321 SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVC 361 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (375)
...+++++.++|.+.+.+.+..+....++..+++..++.+.
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 99999999999999988877665555555555555555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=159.90 Aligned_cols=291 Identities=16% Similarity=0.207 Sum_probs=167.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhH--HHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGML--MVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
.++.++.++++|++.+++.|++.|.+.+.. |....+..|+.|++.|++. .+......++|..+++.++..+.+..+|
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~ 154 (375)
T TIGR00899 75 ALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF 154 (375)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence 345567778899999999999998876654 5566778899998888754 5677777889999999888777777899
Q ss_pred HHHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
|+.|.+.+++.++..+ .++++||+|+....+.+ ++
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~------------ 190 (375)
T TIGR00899 155 TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT--------------------------------RL------------ 190 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC--------------------------------cc------------
Confidence 9999999887666543 45568998753100000 00
Q ss_pred ccccccchhhhHHhhhhhhHHHHHH-HHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLL-LWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
+.++.++++..+.... ....+..... ...+.|.+..+. .+.+..............
T Consensus 191 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~ 247 (375)
T TIGR00899 191 ---------EVRGLLASRDTRLLFVACTLMWGCNIL----YIINMPLLIIHE----------LGLPDKLAGLMMGTAAGL 247 (375)
T ss_pred ---------hhhhhhcCcchHHHHHHHHHHHHHHHH----HHhhhHHHHHHH----------cCCCHHHHHHHHHHHHHH
Confidence 0000111111111111 1111111111 111111111000 001111111111222344
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
.+++.++.+++.||+|||+.+..+.+.+.+.........+.+..........++.....+....+..|..|++ |+++.+
T Consensus 248 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~ 326 (375)
T TIGR00899 248 EIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATT 326 (375)
T ss_pred HHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHH
Confidence 5667788999999999999877665554443333222222222222222222222223345567788999876 569999
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCI 362 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (375)
+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..
T Consensus 327 ~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 327 LYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999998877765544445555555555544443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-18 Score=156.74 Aligned_cols=274 Identities=26% Similarity=0.376 Sum_probs=186.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+.+|++.+++.|++.|++.+.. +....++.|+.|+|+|++..++.+....+|..+++.++..+.+..+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (352)
T cd06174 74 FALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153 (352)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3466667777789999999999999999874 667889999999999999999999999999999999988887778899
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.+.+.+++.++..+...+++ |+ .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~--~~-----------------~------------------------------------- 177 (352)
T cd06174 154 WLFLILAILGLLLALLLLFLL--RL-----------------L------------------------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HH-----------------H-------------------------------------
Confidence 999998877766655443333 00 0
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
.......+.....+.....+.+.+..+. .+.++...........+..++
T Consensus 178 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i 226 (352)
T cd06174 178 ---------------------LLLALAFFLLSFGYYGLLTYLPLYLQEV----------LGLSAAEAGLLLSLFGLGGIL 226 (352)
T ss_pred ---------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHH
Confidence 0011111111111122222222221110 011112223334455677788
Q ss_pred HHHHHHHHHhhhCchH-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 242 GLLLSAVIVDRVGRKI-SMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
+..+.+.+.||.|||+ .+..+..+..+.........+.+......+..........+....+..|..|++.|++..|+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T cd06174 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLF 306 (352)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999 877776666655554443333332223333333444455677889999999999999999999
Q ss_pred HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 017193 321 SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..+
T Consensus 307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999998887665555566666666666555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=162.00 Aligned_cols=296 Identities=17% Similarity=0.247 Sum_probs=168.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHhcCCCch
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEA-ALAWMVMPRLNW 80 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~W 80 (375)
..++.++..++++++.+++.|++.|++.|.. +...+++.|+.|+++|++..++.+.+..+|..+++ .++.......+|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 70 CAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 4567778888899999999999999999874 67788999999999999999999999999999998 466666667899
Q ss_pred HHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
|+.|.+.++..++. ++...+.||+|+... +.++. + ...+ +.+.+++. +++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~-----~~~~-~~~~~~~~---~~~---- 200 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLICFLLLRDSPQSCG---LPPAE-------------E-----MPNE-EPDGDAEK---KEE---- 200 (379)
T ss_pred hhHHHHHHHHHHHHHHHHheeeCCCccccc---cCccc-------------c-----Cccc-cccccccc---ccc----
Confidence 99999887766554 455667888875311 00000 0 0000 00000000 000
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
..+......+.+++.+... ......+......++...+.|.+..+. .+.+.........+..+..
T Consensus 201 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~ 265 (379)
T TIGR00881 201 --ELTKKQIFLQYVLLNKVLW---YISLGYVFVYVVRTGILDWSPLYLTQE----------KGFSKEKASWAFTLYELGG 265 (379)
T ss_pred --cccchHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHc
Confidence 0000011222333332211 111111222222223333333221110 0111111122233445677
Q ss_pred hhHHHHHHHHHhhhC-chHH-HHHHHHH-HHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchh
Q 017193 240 LPGLLLSAVIVDRVG-RKIS-MAIMSIL-TFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRA 314 (375)
Q Consensus 240 i~g~~~~~~l~d~~g-Rr~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~ 314 (375)
+++.++.+++.||.. ||+. ....... .......... ..+........+....+..+.....+.+.+|.+|++.|+
T Consensus 266 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 345 (379)
T TIGR00881 266 LVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG 345 (379)
T ss_pred chhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH
Confidence 889999999999863 3332 2221111 1111111111 111122222222333333344455567889999999999
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhccc
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGC 342 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 342 (375)
++.|+.+.++++++.++|.+.+.+.+..
T Consensus 346 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 346 TAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 9999999999999999999988776654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-18 Score=157.14 Aligned_cols=279 Identities=17% Similarity=0.128 Sum_probs=170.9
Q ss_pred HHHHHHHHhhh-----hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017193 4 SVAGLLSAFSL-----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR 77 (375)
Q Consensus 4 ~i~~~~~~~~~-----~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 77 (375)
.++.++..+++ |++.+++.|++.|++.|.. +...+++.|++|+++|++..++.+....+|.++++.++..+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667 9999999999999998874 66778999999999999999999999999999999998887777
Q ss_pred CchHHHHHHHhHHHHHHHHHHhc--CcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCC
Q 017193 78 LNWRWLLALSSVPSFAVLLLYGL--APETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHT 155 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~~~~~~~--~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (375)
.+||+.|.+.++..++..+.... .||.++. .+ ++ .+++
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~----------------------------~~~~------- 194 (365)
T TIGR00900 155 LGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EI-QA----------------------------LSNA------- 194 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cc-cc----------------------------cchh-------
Confidence 89999999887766655433322 2332210 00 00 0000
Q ss_pred CcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHH-HhhhhhhhhhhhcccchhhhccccchhhHHHHHH
Q 017193 156 PLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVI-LLTSELNSEEARCGSTLLLLEHAQDASLYVNVFI 234 (375)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
..++..+.++.+++++..+........ ....+++.. .+.|.+..+. .+.+..........
T Consensus 195 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 255 (365)
T TIGR00900 195 ------VLRDTREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY----------LGRGSTHYGWVLAA 255 (365)
T ss_pred ------HHHHHHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH----------hCCchHHHHHHHHH
Confidence 000001123334444333322221111 111222222 2233322110 01111111222334
Q ss_pred HHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 235 TSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQP-VTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 235 ~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
..++.+++.++.+++.||.+||+.+..+.....+.........+ .+...+..+...++.....+....+..|.+|++.|
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (365)
T TIGR00900 256 FGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELL 335 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45667788899999999999999887665555444443333222 22222222233333333445677889999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
+++.|+.+...++++.++|.+.+.+.+.
T Consensus 336 g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 336 GRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988766553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=156.34 Aligned_cols=278 Identities=17% Similarity=0.085 Sum_probs=166.3
Q ss_pred hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSF 92 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~l 92 (375)
+|++.++++|+++|++.+.. +....++.|+.|+|+|+++.++.+.....|..+++.++..+....+||+.+.+..+..+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 58899999999999998864 55667889999999999999999999999999999988877777899998877655544
Q ss_pred HHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHH
Q 017193 93 AVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLM 172 (375)
Q Consensus 93 l~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
+.+......||.|+. + ++ + + +.++
T Consensus 190 ~~~~~~~~~~~~~~~---~----------------------------------~~-~-----~-------------~~~~ 213 (392)
T PRK12382 190 LAWAFNGTVRKVPAH---A----------------------------------GE-R-----P-------------SLWS 213 (392)
T ss_pred HHHHHHHhccCCCCC---c----------------------------------cc-C-----c-------------hHHH
Confidence 443333333332210 0 00 0 0 0000
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 017193 173 LLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR 252 (375)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~ 252 (375)
..+ ..++....... ....+.....+.+.+..+. +.+.. .......+++.+++.++.+.+.||
T Consensus 214 ~~~-~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r 275 (392)
T PRK12382 214 VVG-LIWKPGLGLAL----QGVGFAVIGTFVSLYFASK-----------GWAMA--GFTLTAFGGAFVLMRVLFGWMPDR 275 (392)
T ss_pred HHH-HHHHhHHHHHH----HHHHHhHHHHHHHHHHHhc-----------CCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 010 00111111111 1111122222222111110 01111 112233455667888999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHH
Q 017193 253 VGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCP 332 (375)
Q Consensus 253 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~ 332 (375)
+|||+.+..+..+..+.........+........+..........+.......|.+|++.|+++.|+.+....+++.++|
T Consensus 276 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~ 355 (392)
T PRK12382 276 FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSG 355 (392)
T ss_pred cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877666555444333333333322222222222222223344556778999999999999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 333 LVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 998887776554455556666665555555443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-17 Score=157.49 Aligned_cols=298 Identities=16% Similarity=0.141 Sum_probs=175.1
Q ss_pred HHHHHHhh---hhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCch
Q 017193 6 AGLLSAFS---LNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP-RLNW 80 (375)
Q Consensus 6 ~~~~~~~~---~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~W 80 (375)
+....++. .+++.+.+.|++.|++.+. .+....+..|++|+|+||+..++.+.++.+|.++++.+...+.+ ..||
T Consensus 94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW 173 (491)
T PRK11010 94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW 173 (491)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence 33444454 4788899999999998775 35667899999999999999999999999999999888777766 4699
Q ss_pred HHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 81 RWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
|..|++.++..++..+..+++||+|+.. .+ ++.. ++
T Consensus 174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~~~---------------------------~~------------- 209 (491)
T PRK11010 174 QGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PKTL---------------------------EQ------------- 209 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-ccch---------------------------hh-------------
Confidence 9999998887777666666678876420 00 0000 00
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHh-hhhhhhhhhhcccchhhhccccchhhHHH-HHHHHhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILL-TSELNSEEARCGSTLLLLEHAQDASLYVN-VFITSLA 238 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 238 (375)
+...+++++++++.........+.+ ....+....+ .+++... .+.+....... .....++
T Consensus 210 ----~~~~~l~~~~~~~~~~~~ll~~~l~---~~~~~~~~~~~~~~l~~~-----------~G~s~~~~g~~~~~~g~i~ 271 (491)
T PRK11010 210 ----AVVAPLRDFFGRNNAWLILLLIVLY---KLGDAFAMSLTTTFLIRG-----------VGFDAGEVGLVNKTLGLLA 271 (491)
T ss_pred ----hHHHHHHHHHcCcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHHH
Confidence 0001233444333222222222111 1111111112 2222110 01111111111 1233456
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH---Hhhc-cchhHHHHHHHHHHHHhhhhcccceeeccccccccchh
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP---LLTH-QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRA 314 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~ 314 (375)
.++|.+++++++||+|||+.+..+.++..+..+. .... .+........+....+.....+..+++..|+.|++.++
T Consensus 272 ~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~ 351 (491)
T PRK11010 272 TIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA 351 (491)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 7889999999999999988766544433322211 1122 12221111122211111112244578888999999999
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+..|+.+....+++.+++.+.+.+.+..+....+.+.+++.+.+.+..++.
T Consensus 352 t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 352 TQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888877776654444455555555555555444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=161.54 Aligned_cols=314 Identities=15% Similarity=0.181 Sum_probs=176.8
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
+..++++++++++|++.++++|+++|++.|.. +....++.|++|+++|++..++.+....+|..+++.++..+.+.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 34577888888999999999999999998874 67788999999999999999999999999999999998888888999
Q ss_pred HHHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHH-------HHHHhCCCCCCCccccCCCCCCCcccCCC
Q 017193 81 RWLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEK-------MAQRNGTNLPSGMLVSDETATPDEEVIIP 152 (375)
Q Consensus 81 R~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (375)
|+.|++.+.++++.. +..++.||+++- .+.+.|.....+.. .....+++. +. .+.++.....
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~ 225 (485)
T TIGR00711 156 RWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPER--GW------FDSNEILILS 225 (485)
T ss_pred eehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCC--CC------CCchHHHHHH
Confidence 999999887766553 445567876541 12222322111100 000000000 00 0000000000
Q ss_pred C-------CCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccc
Q 017193 153 E-------HTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQD 225 (375)
Q Consensus 153 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
- .....+. +.+++..+. .+++.+...... ...+...+.+++...+.|.+..+. .+.+.
T Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~----------~g~s~ 290 (485)
T TIGR00711 226 ITGLVAIIAFVVWEL-TDDNPLVDL-RLFKYRNFTIGC---VYMSLLGLGLYGSFYLLPLYLQQV----------LGYTA 290 (485)
T ss_pred HHHHHHHHHHHHHHH-cCCCCccCH-HHHcCCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHh----------cCCCH
Confidence 0 0000000 000000011 223322222111 111222233333333333322110 01111
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh-hc--c-chhHHHHHHHHHHHHhhhhcccce
Q 017193 226 ASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL-TH--Q-PVTLTTVLLFGARMFANGTFAVAC 301 (375)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 301 (375)
...........++.+++.++++++.||+|||+.+..+..+..+....+. .. . +........+...+..........
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 370 (485)
T TIGR00711 291 LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLT 370 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223345566788999999999999999988776665554444333 11 1 111111112222222222223444
Q ss_pred eeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 302 VYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 302 ~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
....|.+|++.|+++.|+.+....+++.+++.+...+.+
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556688899999999999999999999999887766654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-17 Score=151.38 Aligned_cols=103 Identities=18% Similarity=0.317 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.+++++++|++.+++.|+++|++.|.. +....++.|++|+|+|++..+......++|.++++.++..+.+.++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 4567778888899999999999999999975 667788999999999999999999999999999999998888888999
Q ss_pred HHHHHHhHHHHHHHH-HHhcCcCCc
Q 017193 82 WLLALSSVPSFAVLL-LYGLAPETP 105 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~-~~~~~pESp 105 (375)
+.|++.++.+++..+ .....||+|
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999998776665433 334467755
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=153.65 Aligned_cols=292 Identities=13% Similarity=0.132 Sum_probs=171.2
Q ss_pred hHHHHHHHHhh-----hhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH---
Q 017193 3 ASVAGLLSAFS-----LNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWM--- 73 (375)
Q Consensus 3 ~~i~~~~~~~~-----~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~--- 73 (375)
.++.+++++++ +|++++++.|++.|++ |+ .++....++++.|+++||++.++.....++|..+++.+...
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~ 188 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF 188 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35666777776 8999999999999997 54 46677889999999999999999976666666554443322
Q ss_pred --hc-------------CCCchHHHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCcc
Q 017193 74 --VM-------------PRLNWRWLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGML 137 (375)
Q Consensus 74 --~~-------------~~~~WR~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~ 137 (375)
+. +..+||....+-.++.++..+ .++.++|-|. .+.+
T Consensus 189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~------------------------ 241 (462)
T PRK15034 189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS------------------------ 241 (462)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC------------------------
Confidence 11 123488877776665555433 3333444332 0000
Q ss_pred ccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccch
Q 017193 138 VSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTL 217 (375)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
.++....+|.+ +++.+...+++....|.++..+.|.+..+.
T Consensus 242 -----------------------------~~~~~~vlk~~---~~Wllslly~~tFG~fvg~s~~lp~~~~~~------- 282 (462)
T PRK15034 242 -----------------------------IADQLPVLQRL---HLWLLSLLYLATFGSFIGFSAGFAMLAKTQ------- 282 (462)
T ss_pred -----------------------------HHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 00111122221 223333333444444444554554443210
Q ss_pred hhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---cc--chhHHHHHHHHHHHH
Q 017193 218 LLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQ--PVTLTTVLLFGARMF 292 (375)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~ 292 (375)
.+..+......+..+...+...++|+++||+|||+++.++.+...++..+... .. .........+...+.
T Consensus 283 -----~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~ 357 (462)
T PRK15034 283 -----FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL 357 (462)
T ss_pred -----cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 01111222233344556677788999999999999988777655554433221 11 111112222222222
Q ss_pred hhhh-cccceeeccccccc---------------------cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccch-hHHHH
Q 017193 293 ANGT-FAVACVYAPEVYPT---------------------SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQ-TAAIF 349 (375)
Q Consensus 293 ~~~~-~~~~~~~~~El~P~---------------------~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 349 (375)
..|. ++..+-..+..||+ +.-+...|+..+.+.+||++.|.++....+..+. ...+.
T Consensus 358 ~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~ 437 (462)
T PRK15034 358 TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMK 437 (462)
T ss_pred HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHH
Confidence 2332 34566678888885 1466788889999999999999888877665543 34566
Q ss_pred HHHHHHHHHHHHHHhcc
Q 017193 350 LLAVVIVLSIVCILLFP 366 (375)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (375)
.+.+..++|.+..|...
T Consensus 438 ~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 438 VFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777788887777654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=152.36 Aligned_cols=296 Identities=14% Similarity=0.169 Sum_probs=160.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHH-hhhcCCCchhHHHHHhhhcCCCch--hhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 5 VAGLLSAFSLNYLSLVTLRGL-VGIGLGSGPVCLSWFLEFIPASNR--GMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 5 i~~~~~~~~~~~~~l~~~R~i-~G~~~G~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
++..+.+++++++.+++.|.+ .|.+....+....+..|+.|++.| +...+..+...++|.+++++++..+.+..|||
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 445566678899987665554 444433345566777888877766 45567888889999999999988887778999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
..|.+.++..++.. +.+.++||+|+- + + +. .+ +.++.+
T Consensus 174 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~~-----------~~-------------~~~~~~----------- 212 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWLFLPSMRKE---L-P--LA-----------TG-------------TLEAPR----------- 212 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCC---C-c--cc-----------cc-------------cccccc-----------
Confidence 99999887766553 445567887631 0 0 00 00 000000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
+++ ++.+.........+ ..++....+.|.+..+. .+.++........+..+..+
T Consensus 213 -~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~----------~~~~~~~~g~~~~~~~~~~i 266 (393)
T PRK15011 213 -RNR-----------RDTLLLFVICTLMW----GTNSLYIINMPLFIINE----------LHLPEKLAGVMMGTAAGLEI 266 (393)
T ss_pred -ccc-----------ccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHH
Confidence 000 00011111111111 11111122222221110 00111111111123345567
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
++.++.+++.||+|||+.+..+...+...........+.+......+..........+....+.+|.+|.+ |+++.++.
T Consensus 267 ~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~ 345 (393)
T PRK15011 267 PTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLY 345 (393)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHH
Confidence 78899999999999998776654444333222222222222111111111111111233446678999975 99999999
Q ss_pred HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 321 SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+...++++.++|.+.+.+.+..+....+++.+++.++ +++.+++.|||
T Consensus 346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 393 (393)
T PRK15011 346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence 9989999999999888776654433344444444444 44444455664
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=148.58 Aligned_cols=270 Identities=15% Similarity=0.186 Sum_probs=159.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..++++++.+++.|++.|++.+.. +....++.|++|+++|++..++.+....+|..+++.++..+.+..+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 159 (385)
T TIGR00710 80 FALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159 (385)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3566777788899999999999999999875 667789999999999999999999999999999998888777778999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.+.+.++..++.. +..++.||+++... + ++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----------------------------------------- 194 (385)
T TIGR00710 160 AIFAFLSLAGILLSALIFFILPETLPYEA---R-IQIST----------------------------------------- 194 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcc---c-CCHHH-----------------------------------------
Confidence 99998877666553 34455777653100 0 00000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
..+++++.++++......... ......++....+.|.+..+. .+.+............+..+
T Consensus 195 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~ 256 (385)
T TIGR00710 195 -----YFETFLLLLKSKMFWGYALIY---GASFGGFFAFFSGAPFVYIDI----------MGVSPSVFGLLFALNIIAMI 256 (385)
T ss_pred -----HHHHHHHHHcCchhHHHHHHH---HHHHHHHHHHHHcChHHHHHH----------cCCCHHHHHHHHHHHHHHHH
Confidence 001122223222211111111 111112222222222221100 01111111222234456778
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---cc-chhHHHH-HHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQ-PVTLTTV-LLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
++.++.+++.||+|||+.+..+.....+....+.. .. +...... ..+..........+....+..|.+| +.|++
T Consensus 257 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~ 335 (385)
T TIGR00710 257 FGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGT 335 (385)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchH
Confidence 89999999999999998876654443332222211 11 1111111 1112222222334556677788888 56999
Q ss_pred HHHHHHHHHhHHHhHHHHHHH
Q 017193 316 GAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~ 336 (375)
+.++.+...+.++.+.+.+.+
T Consensus 336 ~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 336 ASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888876555555555
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-17 Score=151.29 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=86.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
.+++.+++++++|++.+++.|++.|++.|.. +....++.|+.|+++|++..+.......+|..+++.++..+.+..+||
T Consensus 78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr 157 (382)
T PRK10091 78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR 157 (382)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence 4577788899999999999999999999974 555677899999999999999999999999999988887777778999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCc
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETP 105 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp 105 (375)
+.|.+.++..++.. ..+.++||.+
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999887766553 3455678764
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=154.63 Aligned_cols=272 Identities=23% Similarity=0.368 Sum_probs=166.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRW 82 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~ 82 (375)
.++.++..+++|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|.++++.++..+.+..+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~ 152 (352)
T PF07690_consen 73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRW 152 (352)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCC
T ss_pred hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccc
Confidence 344455556688889999999999999874 6778899999999999999999999999999999999988888889999
Q ss_pred HHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 83 LLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 83 ~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
.|++.++..++..+ ...+.+|+|+....+.+.+ ++ .
T Consensus 153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~------------------------------~~-~------------ 189 (352)
T PF07690_consen 153 AFLISAILSLIAAILFILFLPEPPPPRERESPKE------------------------------SE-S------------ 189 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---STTTT--SSTT------------------------------TT--------------
T ss_pred ccccccchhhhhhhhHhhhhhhcccccccccccc------------------------------cc-c------------
Confidence 99999888877754 3455666654211000000 00 0
Q ss_pred ccccchhh-hHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhh-hhhhhhcccchhhhcccc-chhhHHHHHHHHhh
Q 017193 162 VNKSGSSS-FLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSEL-NSEEARCGSTLLLLEHAQ-DASLYVNVFITSLA 238 (375)
Q Consensus 162 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (375)
+.++...+ ++.+++++... ......+...+.++....+.|.+ .+.. +.+ .........+..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~ 255 (352)
T PF07690_consen 190 KKPKPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVL-----------GFSGPSQAGLLFSIFGIV 255 (352)
T ss_dssp -HHHCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHH-----------HCCTHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhcc-----------CCCHHHHHHHHHHHHHHH
Confidence 00000011 23333333222 12222222233333344444432 1110 111 11112223444566
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
.+++.++.+.+.||+++|+..........+....... .++........+...++.....+....+..|.+|++.|++
T Consensus 256 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 335 (352)
T PF07690_consen 256 GIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGT 335 (352)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677889999999999877665554444443333322 1122222222333333333446778889999999999999
Q ss_pred HHHHHHHHHhHHHhHHH
Q 017193 316 GAGIASAVGRIGGMVCP 332 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~ 332 (375)
+.|+.+..+.+++.++|
T Consensus 336 ~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 336 AFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=153.36 Aligned_cols=299 Identities=13% Similarity=0.116 Sum_probs=174.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWL 83 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~ 83 (375)
.++.++..+++|++.+++.|++.|++.+..+....++.|..|+++|++..++.+....+|..+++.++..+.+..+||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 45556667788999999999999997554455567888999999999999999999999999999888877777899999
Q ss_pred HHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccc
Q 017193 84 LALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTV 162 (375)
Q Consensus 84 f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (375)
|.+.++..++.. ....++||.++... +.+..+.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------------------------------- 210 (408)
T PRK09874 175 FFITASVLFLCFLVTLFCIRENFQPVS-KKEMLHMRE------------------------------------------- 210 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccc-chhhhHHHH-------------------------------------------
Confidence 998887766553 34455666542100 000000000
Q ss_pred cccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhh-hhhhhhhhcccchhhhccccchh--hHHHHHHHHhhh
Q 017193 163 NKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTS-ELNSEEARCGSTLLLLEHAQDAS--LYVNVFITSLAE 239 (375)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 239 (375)
.+..+.+++.++........ ..........+.+ +..+.. ....+.. ......+.++..
T Consensus 211 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~l~~ 271 (408)
T PRK09874 211 ------VVTSLKNPKLVLSLFVTTLI---IQVATGSIAPILTLYVRELA----------GNVSNIAFISGMIASVPGVAA 271 (408)
T ss_pred ------HHHhCcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHHHH
Confidence 00000011111111111110 1111111111111 111100 0000000 011112334555
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHH
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGI 319 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~ 319 (375)
+++....+++.||+|||+.+..+.....+..+.....++.+...+..+....+.....+....+..|..|.+.|++..++
T Consensus 272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 351 (408)
T PRK09874 272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSY 351 (408)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehH
Confidence 66777889999999999988777665554444333333332222222222222222334445566788899999999999
Q ss_pred HHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 320 ASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
.+....++..++|.+.+.+.+..+....+.+.+++.+++.+..++.
T Consensus 352 ~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 352 NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877766554455666666666666555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-16 Score=150.93 Aligned_cols=309 Identities=14% Similarity=0.101 Sum_probs=170.3
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
.+++.+++++++|++.++++|+++|++.|.. +....++.|+.|+++|++..++......+|..+++.++..+.+..+||
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~ 164 (471)
T PRK10504 85 FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWH 164 (471)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHH
Confidence 3456677788899999999999999999974 667788999999999999999999999999999999988888888999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHH------HHHhCCCCCCCccccCC-----------CC
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKM------AQRNGTNLPSGMLVSDE-----------TA 143 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~------~~~~~~~~~~~~~~~~~-----------~~ 143 (375)
+.|.+......+.. ......||++. .+.|.|.+.....-. ...++.+.......... ..
T Consensus 165 ~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (471)
T PRK10504 165 WIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLY 241 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHH
Confidence 99998866555443 34445565542 222333332111100 00010000000000000 00
Q ss_pred CCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccc
Q 017193 144 TPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHA 223 (375)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
..+|.. ..+ ...+. .+++++..+..+...+. ..+.+.....+.|++.... .+.
T Consensus 242 ~~~~~~------------~~~-~~~~~-~l~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~----------~g~ 294 (471)
T PRK10504 242 LLHARN------------NNR-ALFSL-KLFRTRTFSLGLAGSFA---GRIGSGMLPFMTPVFLQIG----------LGF 294 (471)
T ss_pred HHHHhc------------CCC-CccCH-HHhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------cCC
Confidence 000000 000 00111 23333332222221111 1111111112222221100 011
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc--cchhH-HHHHHHHHHHHhhhhcccc
Q 017193 224 QDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH--QPVTL-TTVLLFGARMFANGTFAVA 300 (375)
Q Consensus 224 ~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~ 300 (375)
+............+..+++..+.+.+.||+|||+++..+..+..+....+... .+... .....+.........++..
T Consensus 295 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (471)
T PRK10504 295 SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSM 374 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122223344455666788999999999999877666554443333221 12111 1111222212222233455
Q ss_pred eeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
..+..+.+|++.|+++.|+.+...++++.+++.+.+.+++.
T Consensus 375 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 375 NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999999999999999999998887766553
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=159.87 Aligned_cols=292 Identities=19% Similarity=0.254 Sum_probs=167.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh------cC
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV------MP 76 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~------~~ 76 (375)
++.+++++...|++.+++.|++.|+.++.. |....+++-|+.+++||+.++++..+..+|++++.++++.+ ..
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 455566667789999999999999999975 77888999999999999999999999999999999998885 34
Q ss_pred CCchHHHHHHHhHHHHHH-HHHHhcCcCCch--hhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCC
Q 017193 77 RLNWRWLLALSSVPSFAV-LLLYGLAPETPK--YLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPE 153 (375)
Q Consensus 77 ~~~WR~~f~~~~i~~ll~-~~~~~~~pESp~--~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (375)
..||||.|++.++..++. ++..+++|+.|. |..++ +|-+-+.+++++.+..+ .++
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~---~ek~~~~~~~~~~~~~~-------------~~~------ 259 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD---EEKELVVERLRESPSGG-------------IEN------ 259 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhccccch---HHHHHHHHHHHhccCCC-------------ccc------
Confidence 679999999999888776 567778999997 33221 11111122222111100 000
Q ss_pred CCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHH
Q 017193 154 HTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVF 233 (375)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (375)
+.....+++.++.+.. +...+.+++.....|+...|.|.+..+. .+ .+.........
T Consensus 260 ----------~~~~~~~~~a~~dp~v---w~~~l~~~~~~lv~~~~~~~lpl~l~~~--~~--------~s~~~a~~ls~ 316 (495)
T KOG2533|consen 260 ----------KFKWKGFKEALKDPGV---WPFSLCYFFLKLVNYGFSYWLPLYLKSN--GG--------YSELQANLLST 316 (495)
T ss_pred ----------ccCHHHHHHHHhchhH---HHHHHHHHHHhhccccHHHHHHHHHHcC--CC--------cChHHhccccc
Confidence 0112344454544332 2222333444444455555555443320 00 11111111123
Q ss_pred HHHhhhhhHHHHHHHHHhh----hCchHHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 234 ITSLAELPGLLLSAVIVDR----VGRKISMAIMSILTFIFL-LPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~----~gRr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
...+..+++.+++++++|| ..+|...+....+..... ..+.............+.................++..
T Consensus 317 ~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~ 396 (495)
T KOG2533|consen 317 PYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANL 396 (495)
T ss_pred hHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccc
Confidence 4457778899999999999 556665554443333222 11222211111111111111111122234445555555
Q ss_pred cccchhHHHHHHHHHH-hHHHhHHHHHHHHhhc
Q 017193 309 PTSLRATGAGIASAVG-RIGGMVCPLVSVGLVT 340 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 340 (375)
..+.|..+....+..+ ..++.++|.+......
T Consensus 397 ~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a 429 (495)
T KOG2533|consen 397 AGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA 429 (495)
T ss_pred cchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence 6665655555554444 5677777776654333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-16 Score=146.05 Aligned_cols=289 Identities=12% Similarity=0.135 Sum_probs=161.2
Q ss_pred hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHhHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGT-IFEAALAWMVMPRLNWRWLLALSSVPS 91 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~WR~~f~~~~i~~ 91 (375)
+|++.+++.|++.|++.+.. +....++.|..|+++||+.+++.+...++|. ++++.++..+.+..||+..++......
T Consensus 103 ~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 182 (402)
T TIGR00897 103 ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFV 182 (402)
T ss_pred ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 57889999999999988764 4556778899999999999999999999997 577777766666678554433322221
Q ss_pred HHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhh
Q 017193 92 FAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSF 170 (375)
Q Consensus 92 ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
++. ++..+..+|.|+- +.+ + .+++. + +. .+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~---~~~-~-----------------------------~~~~~-----~------~~---~~~~ 215 (402)
T TIGR00897 183 LTGGVIALFSNKDIFTP---QHM-Q-----------------------------TREKF-----S------EL---GKAA 215 (402)
T ss_pred HHHHHHHHhccCCCCCc---ccc-c-----------------------------CCcch-----h------hH---HHHH
Confidence 111 2222233432210 000 0 00000 0 00 0112
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 017193 171 LMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIV 250 (375)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~ 250 (375)
+.+++.+.. +......+.+...+++...+.|.+.++. +.+............++.+++.+..+++.
T Consensus 216 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~ 281 (402)
T TIGR00897 216 TILFTNPNV---LLGGMVRIINTIGLFGFAVFLPMFVAEL-----------GFSTSEWLQIWGTFFFTNIVFNVIFGIVG 281 (402)
T ss_pred HHHHcChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322 1222223334445555555555443210 11111111222344567788999999999
Q ss_pred hhhCchHHHH-HHHHHHHHHHHHHh---h--ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHH
Q 017193 251 DRVGRKISMA-IMSILTFIFLLPLL---T--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVG 324 (375)
Q Consensus 251 d~~gRr~~~~-~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~ 324 (375)
||+|||+... .+.+...+...... . .++........+....+..+. .......+|..| +.|+++.|+.+...
T Consensus 282 dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~ 359 (402)
T TIGR00897 282 DKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VPLAAVFPTLAP-KHKGAAMSVLNLSA 359 (402)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCc-chhHHHHHHHHHHH
Confidence 9999887653 22222222111111 1 112222222222222222222 222345568766 47999999999999
Q ss_pred hHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 325 RIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
++++.++|.+...+.+..+....+++.+++.+++.+...+.
T Consensus 360 ~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 360 GLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888887666667777777776766665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-16 Score=152.01 Aligned_cols=312 Identities=13% Similarity=0.051 Sum_probs=170.5
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhh-cCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEF-IPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~-~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
+..++++++++++|++.++++|+++|++.|+. +.....+.+. .|+++|++..++....+.+|..+++.++..+.+..+
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45678899999999999999999999998864 5555556554 578999999999999999999999999999888899
Q ss_pred hHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHH------HHHHHhCCCCCCCccccCCCCCCCcccCC-
Q 017193 80 WRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLE------KMAQRNGTNLPSGMLVSDETATPDEEVII- 151 (375)
Q Consensus 80 WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (375)
||+.|++.....++. ++..+++||+|+-. +.+.|.....+. ........... .. +.......
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~-------~~~~~~~~~ 229 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKG-FL-------SLWVTSLTL 229 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcccc-CC-------chHHHHHHH
Confidence 999999986655554 44566788876421 112221111100 00000000000 00 00000000
Q ss_pred ------CCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccc
Q 017193 152 ------PEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQD 225 (375)
Q Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
.......+.+ .+.+..+ ..+++.+...... ...+...+.+++...+.|.+.... .+.+.
T Consensus 230 ~~~~~~l~~f~~~e~~-~~~p~~~-~~lf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lq~v----------~g~s~ 294 (495)
T PRK14995 230 LTGALLLGLFIRTQLA-ASRPMID-MRLFTHRIILSGV---VMAMTAMITLVGFELLMAQELQFV----------HGLSP 294 (495)
T ss_pred HHHHHHHHHHHHHHhc-CCCCCcC-HHHhCCcccHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------cCCCH
Confidence 0000000000 0000001 1233332222111 111222222333333333221100 01111
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--c-cchhHHHHHHHHHHHHhhhhccccee
Q 017193 226 ASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--H-QPVTLTTVLLFGARMFANGTFAVACV 302 (375)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (375)
...........+...++..+.|++.||+|||+.+..+.++..+....+.. . .+.+......+..++......+....
T Consensus 295 ~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~ 374 (495)
T PRK14995 295 LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTS 374 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11122223345666778899999999999999877666555443332221 1 12222222222222222223344566
Q ss_pred eccccccccchhHHHHHHHHHHhHHHhHHHHHHHHh
Q 017193 303 YAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGL 338 (375)
Q Consensus 303 ~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (375)
...+..|.+.++.+.++.+....+|+.+++.+...+
T Consensus 375 ~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 375 AIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999988888877665544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-16 Score=144.44 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=86.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.++++|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+++.++..+.+..+||
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 145 (377)
T PRK11102 66 FALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH 145 (377)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 4566777778899999999999999998874 566788999999999999999999999999999999887777778999
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCc
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETP 105 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp 105 (375)
+.|.+.++..++. ++..+++||++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 146 AIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9999887776665 34556677765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=143.42 Aligned_cols=280 Identities=14% Similarity=0.006 Sum_probs=158.6
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|+++|++.+.. +....++.|..|+++|++..++......+|..+++.++..+.+..+||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 3456677788899999999999999998874 666788899999999999998888888888888888877776778999
Q ss_pred HHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|++.++..++..+ .+..+||+++... +..+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------------------------------- 203 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRVG---EKLSLKE----------------------------------------- 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccc---ccccHHH-----------------------------------------
Confidence 999988777666544 4445777754210 0000000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
...+++..++++........ .+.....++....+.|.+..+. .+.+............++.+
T Consensus 204 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~~~~ 265 (406)
T PRK15402 204 -----LGRDYKLVLKNRRFVAGALA---LGLVSLPLLAWIALSPVILISG----------EQLSSYEYGLLQVPVFGALI 265 (406)
T ss_pred -----HHHHHHHHHcCcHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHH----------hCCCHHHHHHHHHHHHHHHH
Confidence 00122233333222111111 1111111122112222221110 00111111111122334567
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh----c-cchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT----H-QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
++.++.+.+.||.+||+.+..+.+...+....+.. . .+........+..........+....... ..+++.|++
T Consensus 266 ~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~ 344 (406)
T PRK15402 266 AGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGT 344 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccH
Confidence 78899999999999999877665544332222211 1 11121111111111111111222222222 234488999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchh
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQT 345 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (375)
..+..+....++..+++.+...+.+..+..
T Consensus 345 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 345 VSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 999999999999999998888776655433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-16 Score=144.13 Aligned_cols=307 Identities=11% Similarity=0.036 Sum_probs=166.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 017193 5 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWL 83 (375)
Q Consensus 5 i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~ 83 (375)
+++++++++++. ++.|+++|++.|.. |...+++.|++|+++|+++.++.+....+|.++++.++..+.+. .|+..
T Consensus 80 ~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~ 155 (393)
T PRK11195 80 LGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAA 155 (393)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445555555553 78999999999875 77789999999999999999999999999999999998776553 48888
Q ss_pred HHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccccc
Q 017193 84 LALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVN 163 (375)
Q Consensus 84 f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (375)
+.+.+...++..+....+||+|+.... +.++..+.++...
T Consensus 156 ~~i~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------- 195 (393)
T PRK11195 156 LAVCALIYLLAALFNLFIPRLGARRPG--QSWNPIALLRDFF-------------------------------------- 195 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccc--cCCCHHHHHHHHH--------------------------------------
Confidence 877765555555566778988743110 0001000011000
Q ss_pred ccchhhhHHhhhhhhHHHHHHHH-HHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhH
Q 017193 164 KSGSSSFLMLLSTELIRTTLLLW-FLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPG 242 (375)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 242 (375)
..++.+++.+..+..+... +.+......++....+.+... +.+...........+++.+++
T Consensus 196 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------g~s~~~~G~~~~~~~~g~i~g 257 (393)
T PRK11195 196 ----HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL--------------GITLNQPAYLQAVVAIGIAVG 257 (393)
T ss_pred ----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------CCChhHHHHHHHHHHHHHHHH
Confidence 0112333333333222211 112221112222222222111 111111222234555677888
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc-hhHHHHHHH
Q 017193 243 LLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL-RATGAGIAS 321 (375)
Q Consensus 243 ~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~-R~~~~g~~~ 321 (375)
++..+.+.||.++|+.+..+...+ .....+....+.+......+....+.........+...|.-|.+. ++++.++.+
T Consensus 258 ~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~ 336 (393)
T PRK11195 258 AGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQN 336 (393)
T ss_pred HHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHh
Confidence 888899999888887766554332 222222222222222222222222211122334455677766655 799999999
Q ss_pred HHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc-cccccCCCCC
Q 017193 322 AVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF-PFETKGKRID 375 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pet~~~~~~ 375 (375)
...+++..++..+...+ ...+-...+.+.++...++....+.+ ..|.+.|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK11195 337 FNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQFD 390 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999988888776533 33333333333333333333333322 3455555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-16 Score=145.52 Aligned_cols=262 Identities=13% Similarity=0.116 Sum_probs=152.7
Q ss_pred HHHHHHHhh---hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Q 017193 5 VAGLLSAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN- 79 (375)
Q Consensus 5 i~~~~~~~~---~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~- 79 (375)
++..+.++. .+.+.+...+++.|++.+.. +....++.|++|+|+|+++.++.+.+..+|.++++.++..+.+..+
T Consensus 69 ~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~ 148 (356)
T TIGR00901 69 SLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA 148 (356)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 333444555 35556777777777666653 5667889999999999999999999999999999988877666666
Q ss_pred -------hHHHHHHHhHHHHHHHHHHh-cCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCC
Q 017193 80 -------WRWLLALSSVPSFAVLLLYG-LAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVII 151 (375)
Q Consensus 80 -------WR~~f~~~~i~~ll~~~~~~-~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
||..|.+.++..++..+..+ ..||+++.. .+.++..+.
T Consensus 149 ~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~---~~~~~~~~~------------------------------- 194 (356)
T TIGR00901 149 NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDA---SVPKPLTQA------------------------------- 194 (356)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCccc---ccchhHHHH-------------------------------
Confidence 99999999887776655444 356643210 000000000
Q ss_pred CCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhH-H
Q 017193 152 PEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY-V 230 (375)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 230 (375)
....++++++++..+.........+.....++....+.+.+..+. +.+..... .
T Consensus 195 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------g~~~~~~g~~ 249 (356)
T TIGR00901 195 --------------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-----------GFSKEEIALV 249 (356)
T ss_pred --------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHH
Confidence 001233344433322233333222333344444443333322110 11111111 1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---cc-------ch-hHHHHHHHHHHHHhhhhccc
Q 017193 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQ-------PV-TLTTVLLFGARMFANGTFAV 299 (375)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~-------~~-~~~~~~~~~~~~~~~~~~~~ 299 (375)
......+..+++.++++++.||+|||+.+..+.++..+....+.. .. +. +......+...+.....++.
T Consensus 250 ~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (356)
T TIGR00901 250 AKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVA 329 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 122223456789999999999999998877666655443332221 11 11 21222222223333345567
Q ss_pred ceeeccccccccchhHHHHHHHHHHh
Q 017193 300 ACVYAPEVYPTSLRATGAGIASAVGR 325 (375)
Q Consensus 300 ~~~~~~El~P~~~R~~~~g~~~~~~~ 325 (375)
..++.+|.+|++.|++.+|+.+...+
T Consensus 330 ~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 330 FVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 88999999999999999999887654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=142.39 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=84.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|+++|++.|.. +....++.|..|+++|++..++.+....+|..+++.++..+....+||
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 78 FIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 3456667777889999999999999998874 566788999999999999999999999999999998887777778999
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCc
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETP 105 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp 105 (375)
+.|.+.++..++. ++....+||++
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999887766655 34455677765
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=145.39 Aligned_cols=273 Identities=16% Similarity=0.248 Sum_probs=146.3
Q ss_pred hHHHHHHHHhhh-hHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 017193 3 ASVAGLLSAFSL-NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP----- 76 (375)
Q Consensus 3 ~~i~~~~~~~~~-~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~----- 76 (375)
..++.++.++++ |++.+++.|+++|++.+.......++.|+.|+++|++..++......+|..+++.++..+..
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 456677888888 99999999999999855445567889999999999999999887777777766655433221
Q ss_pred -----CCchHHHH-HHHhHHH-HHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCccc
Q 017193 77 -----RLNWRWLL-ALSSVPS-FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEV 149 (375)
Q Consensus 77 -----~~~WR~~f-~~~~i~~-ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
..+||+.| ...++.. ++.++.....+|+|+- +.++.+. +.++ + +.+.
T Consensus 157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~--------~---~~~~-- 210 (366)
T TIGR00886 157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGKL--------SFKG--------A---RWSV-- 210 (366)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchhc--------cccc--------c---cccc--
Confidence 34899998 4434333 3334455667887741 1010000 0000 0 0000
Q ss_pred CCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhH
Q 017193 150 IIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLY 229 (375)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
+ +...++..+.++.+. .+......+.....++....+.+.+..+. .+.+.....
T Consensus 211 ---~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~ 264 (366)
T TIGR00886 211 ---G----------TGALGDQLKVFRDRH---TWILALLYSVTFGSFLGVSSIFAMFFKDQ----------FGLSKVTAG 264 (366)
T ss_pred ---c----------chhHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHH
Confidence 0 000011222333221 11111112222222333333333222110 011111111
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh--hcc--chhHHHHHHHHHHHHhhhhcccceeecc
Q 017193 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL--THQ--PVTLTTVLLFGARMFANGTFAVACVYAP 305 (375)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (375)
....+..+..+++.++.+++.||+|||+.+..+..........+. ... +........+..........+..+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 344 (366)
T TIGR00886 265 AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVP 344 (366)
T ss_pred HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcch
Confidence 122344556678888999999999998776555443333222222 121 2221111121221222223356778889
Q ss_pred ccccccchhHHHHHHHHHHhHHH
Q 017193 306 EVYPTSLRATGAGIASAVGRIGG 328 (375)
Q Consensus 306 El~P~~~R~~~~g~~~~~~~~~~ 328 (375)
|++| +.|+++.|+.+..+++|+
T Consensus 345 ~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 345 HIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred hhch-hhcccHHHHHHHhccCCC
Confidence 9998 689999999999888753
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-15 Score=139.00 Aligned_cols=271 Identities=12% Similarity=0.150 Sum_probs=157.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++.++++|++.+++.|+++|++.+.. +....++.|+.|+++|++..+.......+|..+++.++..+.+..+||
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 160 (401)
T PRK11043 81 FALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ 160 (401)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 3456677778899999999999999998764 445678899999999999988888888889999988887777778999
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.|.+.++..++..+...+++|+++. .+ ++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~------------------------------------------- 192 (401)
T PRK11043 161 AIFATLFAITLLLILPTLRLKPSKKA----RK-QSQD------------------------------------------- 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc----cc-cchH-------------------------------------------
Confidence 99998887777665555556665430 00 0000
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
..++++.++.+..+...... ......++....+.|.+..+. +.+............++.++
T Consensus 193 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~g~~~~~~~~~~~~ 253 (401)
T PRK11043 193 -----ALTFKQLLKSKTYLGNVLIF---AACSAAFFAWLTGSPFILEQM-----------GYSPADIGLSYVPQTIAFLV 253 (401)
T ss_pred -----HHHHHHHHcChhHHHHHHHH---HHHHHHHHHHHHHhHHHHHHc-----------CCCHHHHHHHHHHHHHHHHH
Confidence 01122222222111111111 111112222222233222110 11111111122233456677
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHH---HHhh-ccchhHHHHH-HHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSILTFIFLL---PLLT-HQPVTLTTVL-LFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
|.++.+++.||+|||+..........++.. .... ..+....... ...........++....+..|..|. .|+++
T Consensus 254 g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 332 (401)
T PRK11043 254 GGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKA 332 (401)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHH
Confidence 888889999999998865443333222211 1111 1112111111 1112222223344455566677775 69999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
.|+.+..+..++..++.+.+.+.+.
T Consensus 333 ~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 333 AALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999888888888888777654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=162.03 Aligned_cols=271 Identities=12% Similarity=0.012 Sum_probs=157.5
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC---------C
Q 017193 9 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR---------L 78 (375)
Q Consensus 9 ~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~---------~ 78 (375)
++..+.+++.++++|+++|++.|.. ++...++.|++|+++|++++++.+.+..+|.++++.++..+... .
T Consensus 96 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 96 LAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3444578999999999999999874 67788999999999999999999999999999999988776543 2
Q ss_pred chHHHHHHHhH-HHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCc
Q 017193 79 NWRWLLALSSV-PSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPL 157 (375)
Q Consensus 79 ~WR~~f~~~~i-~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (375)
+|++.+.+..+ ..++.++..+.+||+|+....+.+. ++ . .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~-~-----~-- 216 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK-------------------------------KK-Y-----L-- 216 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc-------------------------------cc-c-----c--
Confidence 45555544433 3334455566688888642110000 00 0 0
Q ss_pred ccccccccchhhhHHhhhhhhHHHHHHHH-HHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccch-hhHHHHHHH
Q 017193 158 LSSTVNKSGSSSFLMLLSTELIRTTLLLW-FLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDA-SLYVNVFIT 235 (375)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 235 (375)
..+.....++.+++.+..+..++.. +.++. .+....+.+.+.... .+.+.. .......+.
T Consensus 217 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------~g~s~~~~~g~~~~~~ 278 (1146)
T PRK08633 217 ----FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFI----SQLAQANFPAYAKEV----------LGLDNTFQVQYLLAAS 278 (1146)
T ss_pred ----cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHH----------hCCCcHHHHHHHHHHH
Confidence 0000011233344443332222211 11111 111111122111110 001111 112223344
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
.++.+++.++.+++.||.++|+.+..+.++.+++.+.+....+.+...+..+...++.....+...++..|..|++.|++
T Consensus 279 ~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~ 358 (1146)
T PRK08633 279 AIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGK 358 (1146)
T ss_pred HHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhh
Confidence 56677889999999999998887766655554444443333333222222333333333334556788899999999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHH
Q 017193 316 GAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~ 336 (375)
+.|+.+.+..+++++++.+..
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877665544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-15 Score=138.64 Aligned_cols=100 Identities=23% Similarity=0.159 Sum_probs=77.6
Q ss_pred HHHHHhh---hhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CchH
Q 017193 7 GLLSAFS---LNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-LNWR 81 (375)
Q Consensus 7 ~~~~~~~---~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~WR 81 (375)
..+.++. .+++.+++..++.|+..+. .+....++.|+.|+|+|++..++......+|.++++.++..+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 3344454 3577788888887766555 366678999999999999999999999999999998887776664 5999
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCch
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPK 106 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~ 106 (375)
..|.+.++..++..+...++||+++
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999988777666555667788764
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-16 Score=146.19 Aligned_cols=308 Identities=17% Similarity=0.262 Sum_probs=178.8
Q ss_pred HHHHHHHHhhh--hHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Q 017193 4 SVAGLLSAFSL--NYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-LN 79 (375)
Q Consensus 4 ~i~~~~~~~~~--~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~ 79 (375)
+++++++-.+. +++.+++.|+++|++.|. .|+.....+.|+|+++|++..++...+..+|.++..+++..+-+. .|
T Consensus 114 a~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 114 ALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 34444444443 556789999999999997 477888999999999999999999999999999998877766555 89
Q ss_pred hHHHHHHHhHHHHHHHHH-HhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcc
Q 017193 80 WRWLLALSSVPSFAVLLL-YGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL 158 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~-~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
|+.+|++.++.+++..+. ..+..|+|+- |.+..+.| ++++.+...+ +..
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~E--l~~I~~~k~~----------------~~~--------- 243 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEKE--LKYIEKGKSE----------------AHV--------- 243 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHH--HHHHHhcccc----------------ccc---------
Confidence 999999999998887554 4557788874 33333332 2333211000 000
Q ss_pred cccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 159 SSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
+.+ ..-.++.+++++- .+..|+..++....++.+..+.|.+..+.- +.+.........+.-+.
T Consensus 244 ---~~~-~~vP~~~i~ts~~---vwai~~~~f~~~~~~~~l~~y~PtY~~~VL----------~f~v~~~G~~salP~l~ 306 (466)
T KOG2532|consen 244 ---KKK-PPVPYKAILTSPP---VWAIWISAFGGNWGFYLLLTYLPTYLKEVL----------GFDVRETGFLSALPFLA 306 (466)
T ss_pred ---CCC-CCCCHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------CCChhhhhHHHHHHHHH
Confidence 000 1124555555432 223444445555555555555554432210 11111112223355566
Q ss_pred hhhHHHHHHHHHhhhCch--------HH-HHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 239 ELPGLLLSAVIVDRVGRK--------IS-MAIMSILTFIFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr--------~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..+++|.++||+.+| +. -.++..+.+++++.+.... +.+...+ .+.......|. ...-.+..-.
T Consensus 307 ~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~-~l~~~~~~~g~-~~~Gf~~~~~ 384 (466)
T KOG2532|consen 307 MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI-LLTIAIGLSGF-NISGFYKNHQ 384 (466)
T ss_pred HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH-HHHHHHHHccc-chhhhHhhhh
Confidence 677888999999998653 22 2333444444444433322 2222222 22221222222 2222222222
Q ss_pred c-cccchhHHHHHHHHHHhHHHhHHHHHHHHhhc-c-cchhH-HHHHHHHHHHHHHH
Q 017193 308 Y-PTSLRATGAGIASAVGRIGGMVCPLVSVGLVT-G-CHQTA-AIFLLAVVIVLSIV 360 (375)
Q Consensus 308 ~-P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~ 360 (375)
- -++.-+...|+++.++.+.++++|.+.+.+.. . ..++. .+++.+++.+++.+
T Consensus 385 ~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 385 DIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence 2 56778999999999999999999999887763 2 12333 34444555544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=138.03 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=179.4
Q ss_pred HHHHHHhhh---hHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Q 017193 6 AGLLSAFSL---NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN--- 79 (375)
Q Consensus 6 ~~~~~~~~~---~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--- 79 (375)
-.+..+++. +++++++++++.|++-|.+.+..++++++.||+++|.++++.. ..++|..+...++-.+....+
T Consensus 92 P~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~ 170 (417)
T COG2223 92 PCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLA 170 (417)
T ss_pred HHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHH
Confidence 344455554 5559999999999987777888899999999999999999998 888888877777666555556
Q ss_pred hHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcc
Q 017193 80 WRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLL 158 (375)
Q Consensus 80 WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
||....+-.++.++. +..++.+.|.|+...+.+... .
T Consensus 171 w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-----------------------------~------------- 208 (417)
T COG2223 171 WRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-----------------------------P------------- 208 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc-----------------------------h-------------
Confidence 999887776666554 456666777775311000000 0
Q ss_pred cccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhh
Q 017193 159 SSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLA 238 (375)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
.+++..++. ++++.+...++.+.-.+-++..+.|.+..++ ...+..+-........+.
T Consensus 209 ---------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~----------fg~~~~~Ag~~a~~f~~~ 266 (417)
T COG2223 209 ---------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ----------FGLSPVTAGLIAFLFPLI 266 (417)
T ss_pred ---------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCChhhHHHHHHHHHHH
Confidence 011222221 2233344444444333444444444332211 011111111112222233
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc------chhHHHHHHHH-HHHHhhhhcccceeecccccccc
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ------PVTLTTVLLFG-ARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
....-.++|+++||+|.|++++.....++++........ .........+. ...+.....+..+-..+.+||.+
T Consensus 267 g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~ 346 (417)
T COG2223 267 GALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE 346 (417)
T ss_pred HHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh
Confidence 334455689999999988888777666666555444322 12222222222 22222233456888899999885
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
-+...|+..+++.+||+.-|..+....+..+ ....+.++..+.+++.+..+..
T Consensus 347 -~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 347 -TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred -hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677799999999999999999888777766 3455667777777777766655
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=145.98 Aligned_cols=297 Identities=12% Similarity=0.064 Sum_probs=159.8
Q ss_pred hHHHHHHHHhhhhHHHHHH-HHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 3 ASVAGLLSAFSLNYLSLVT-LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~-~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
.+++.++++++++++.+++ .|+++|++.|.. +....++.|+.| ++|++..++.+....+|..++++++..+.+.+||
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 4567778888899998865 579999999864 555677789886 7899999999999999999998887777777899
Q ss_pred HHHHHHHhHHHHHHHHHHhc-CcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 81 RWLLALSSVPSFAVLLLYGL-APETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~~~~~-~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
|+.|.+.++..++..+...+ .++.+..- +.+ +|.+ ++.+ .+.. .++.. .. ..
T Consensus 173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~-~~~~---------~~~~-------~~~~--~~~~~----~~--~~ 225 (455)
T TIGR00892 173 RGSFLILGGLLLHCCVCGALMRPVGPSQR--VSK-SKSK---------EGLP-------PDGS--TKKLS----KK--ST 225 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc--ccc-cccc---------ccCC-------CCCc--ccccc----cc--ch
Confidence 99999998776655433333 33322110 000 0000 0000 0000 00000 00 00
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (375)
. +......++ .+++.+... ......+...+.++....+.+.+..+. +.+.........+.+++.
T Consensus 226 ~-~~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~~-----------g~s~~~~g~~~~~~~~~~ 289 (455)
T TIGR00892 226 A-EKINRFLDF-SLFTHRGFL---VYLSGNVIMFLGFFAPIIFLVPYAKDK-----------GVDEYEAAFLLSIIGFVD 289 (455)
T ss_pred h-hhhhhhcch-HHhcCchHH---HHHHHHHHHHHHccchHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHH
Confidence 0 000000011 123322211 111112222233333333333222110 111111122223445666
Q ss_pred hhHHHHHHHHHhhh--CchHHHHH--HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 240 LPGLLLSAVIVDRV--GRKISMAI--MSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 240 i~g~~~~~~l~d~~--gRr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
+++..+.+++.||. ++|+.... +.+..++..+......+.+...+..+...+......+..+.+..|.+|.+.|++
T Consensus 290 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~ 369 (455)
T TIGR00892 290 IFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSS 369 (455)
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhh
Confidence 77788889999973 33332222 222222222222222222222222222222222334556778889999999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
+.|+.+....++++++|.+.+.+.+..+
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcC
Confidence 9999999999999999998887766543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-15 Score=138.94 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|+++|++.|.. +...+++.|.+|+++|++..++.+....+|..+++.++..+. .++||
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~ 164 (400)
T PRK11646 86 RAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFR 164 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 3456667777889999999999999988764 666788999999999999999999999999999999887766 67999
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcC
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPE 103 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pE 103 (375)
+.|++.++..++.. +...+.||
T Consensus 165 ~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 165 LVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 99998877665543 33344555
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-14 Score=133.70 Aligned_cols=285 Identities=16% Similarity=0.128 Sum_probs=157.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++..+.++++|++.+++.|+++|++.|.. +.....+.|..|+++|++..+..+....+|..+++.++..+.+...|+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 3456677788899999999999999999875 555677788899999999999999999999999998877665443333
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
..+....+...+..+.....+|++. ++++ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~----~------- 190 (381)
T PRK03633 161 LPWVTGLVLAAILPLLFTRILNQQA---------------------------------------ENHD----S------- 190 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCC---------------------------------------CCCC----C-------
Confidence 3322221111111111111111100 0000 0
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
.+..+.++.+..+......+. ....+.....+.|.+..+ .+.+.........+..++.++
T Consensus 191 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~-----------~g~s~~~~g~~~~~~~~~~~~ 250 (381)
T PRK03633 191 ------TSIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNH-----------QGMSDASIGFWMALLVSAGIL 250 (381)
T ss_pred ------CCHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHH
Confidence 001112222211111111111 111111111222322111 011111111222344566778
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIAS 321 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~ 321 (375)
+.+..+++.||+|||+.+..+.....+....... ... .....+..........+....+..|..|++.++.+.+..+
T Consensus 251 ~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~~~-~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 327 (381)
T PRK03633 251 GQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS--QAA-MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALL 327 (381)
T ss_pred HHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8899999999999999876665554443322221 111 1111111112222334556677789999988887778877
Q ss_pred HHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 017193 322 AVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIV 360 (375)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (375)
....+|+.++|.+.+.+.+..+....+.+.+.+.++..+
T Consensus 328 ~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 328 LSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 778899999999998887766544455555555544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=157.72 Aligned_cols=271 Identities=13% Similarity=-0.021 Sum_probs=161.1
Q ss_pred hhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHH
Q 017193 12 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVP 90 (375)
Q Consensus 12 ~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~ 90 (375)
..+|+++++++|+++|++.+.. |+..+++.|+.|+++|++++++.+...++|.+++++++.++....+||+.|....+.
T Consensus 104 ~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~ 183 (1140)
T PRK06814 104 HLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGI 183 (1140)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3479999999999999999874 778899999999999999999999999999999999999888888999999666666
Q ss_pred HHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhh
Q 017193 91 SFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSF 170 (375)
Q Consensus 91 ~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
.++.++...++||++.-- +++..+ . . ..+.....+
T Consensus 184 ~~~~~~~~~~~~~~~~~~--~~~~~~------------------------------~-------~------~~~~~~~~~ 218 (1140)
T PRK06814 184 AVLGWLASLFIPKTGNAA--PDLKID------------------------------R-------N------IIRSTITLL 218 (1140)
T ss_pred HHHHHHHHhhCCCCCCCC--CCCeec------------------------------c-------c------hHHHHHHHH
Confidence 665556666677765200 000000 0 0 000000122
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHH
Q 017193 171 LMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIV 250 (375)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~ 250 (375)
+.+++.+..+...+.. +...+.++....+.|.+..+. .+.+...........+++.++|.++.+++.
T Consensus 219 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~ 285 (1140)
T PRK06814 219 KYAKADKRIWLAILGI---SWFWLVGAVVLSQLPLLAKET----------LGGDENVATLFLAVFSVGVAVGSFLASKLS 285 (1140)
T ss_pred HHHhcCchHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333222222111 111122222223333322110 011111112223455567788999999999
Q ss_pred hhhCchHHHHHHHHHHHHHHHHHhhc--------------------cchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 251 DRVGRKISMAIMSILTFIFLLPLLTH--------------------QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 251 d~~gRr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
|+.++++.+..+.++.+++.+.+... .+.+...+..+..+++.........++..|..|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 365 (1140)
T PRK06814 286 EGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP 365 (1140)
T ss_pred CCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc
Confidence 88766554433333322222211110 1222222222222233223334567889999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
+.|++++|+.+.++.++..+++.+...+.+
T Consensus 366 ~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 366 AHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999898888776653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-14 Score=130.38 Aligned_cols=283 Identities=15% Similarity=0.034 Sum_probs=162.3
Q ss_pred HHhhhhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHh
Q 017193 10 SAFSLNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSS 88 (375)
Q Consensus 10 ~~~~~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~ 88 (375)
...+++++.+++.|.++|.+.+. .|....+..|+ +++|++..+......++|.+++++++..+.+..|||..|.+..
T Consensus 88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~ 165 (382)
T TIGR00902 88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT 165 (382)
T ss_pred HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 34578999999999999988776 46555666664 5778889999999999999999998888888889999998875
Q ss_pred HHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchh
Q 017193 89 VPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSS 168 (375)
Q Consensus 89 i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (375)
+..++.+... .++|+|+- +++ ++ .++ . + + .+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~---~~~-~~----------------------------~~~-~-----~------~----~~ 196 (382)
T TIGR00902 166 AGLAFMLIGF-LIKPTIPP---KDA-IP----------------------------EDE-S-----Q------G----DS 196 (382)
T ss_pred HHHHHHHHHH-HcCCCCCC---Ccc-cc----------------------------ccc-c-----c------c----ch
Confidence 5433333322 33443210 000 00 000 0 0 0 01
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHH
Q 017193 169 SFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAV 248 (375)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 248 (375)
+..++++++.........+........++ .+.+.+..+. +.+.........+..+..+++..+.+.
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~---~~~~~~l~~~-----------g~s~~~~g~l~~~~~~~~i~~~~~~~~ 262 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYY---GFSAIYWQAA-----------GISASATGLLWGIGVLAEIIIFAFSNK 262 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHHHHHHhHH
Confidence 22334443322222221111111111122 1222111110 111111112223456677888889999
Q ss_pred HHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHH-HhHH
Q 017193 249 IVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAV-GRIG 327 (375)
Q Consensus 249 l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~-~~~~ 327 (375)
+.||+|+|+.+..+.+.+.+....+....+.+.....-...........+....|.++. |++.|++++++.+.. ..++
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL 341 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence 99999999998887777766555444333332222222222222222334455677787 999999999997654 4578
Q ss_pred HhHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 017193 328 GMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSI 359 (375)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (375)
..++|.+.+.+.+..+ ...++..+++.+++.
T Consensus 342 ~~~g~~~~G~l~~~~g-~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 342 IAIFTAFAGFIYPTLG-AGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 8889998888877765 355666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-13 Score=130.25 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=87.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
+..++++++++++|++.++++|+++|++.|.. +....++.|+.|+++|++..++......+|..+++.++..+.+..+|
T Consensus 90 ~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw 169 (413)
T PRK15403 90 IFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW 169 (413)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34577888889999999999999999998754 34557788999999999999999999999999999988877777899
Q ss_pred HHHHHHHhHHHHHHHH-HHhcCcCCch
Q 017193 81 RWLLALSSVPSFAVLL-LYGLAPETPK 106 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~-~~~~~pESp~ 106 (375)
|+.|++.++..++..+ .++.+||+++
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999998887776644 3556888764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-14 Score=131.54 Aligned_cols=262 Identities=16% Similarity=0.115 Sum_probs=156.5
Q ss_pred hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC---------------
Q 017193 13 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP--------------- 76 (375)
Q Consensus 13 ~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--------------- 76 (375)
.+|++.+++.|++.|+|.|.. +...+++.|..|+++|++..+..+.+.++|..+++.++..+..
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~ 170 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS 170 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence 358999999999999999974 6778899999999999999999999999999999887655421
Q ss_pred -----------CCchHHHHHHHhHHHHHHHHHHh--cCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCC
Q 017193 77 -----------RLNWRWLLALSSVPSFAVLLLYG--LAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETA 143 (375)
Q Consensus 77 -----------~~~WR~~f~~~~i~~ll~~~~~~--~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (375)
..+||++|.+.++..++..+... ..||.++ +|.
T Consensus 171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~~-------------------------- 216 (410)
T TIGR00885 171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SDA-------------------------- 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------ccc--------------------------
Confidence 13699999888776665433322 2343211 000
Q ss_pred CCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccc
Q 017193 144 TPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHA 223 (375)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
++ . . . .++.+.+++++..+...+..+.+.+... +...+.+.+..+.. . ....
T Consensus 217 --~~-~-~-~-------------~~~~~~~~~~~~~~~~~l~~f~yvg~e~---~~~s~l~~y~~~~~-~------~~~~ 268 (410)
T TIGR00885 217 --KQ-I-S-F-------------SASLSRLARIRHYREGVIAQFFYVGVQI---MCWTFIIQYAVRLI-P------GMTA 268 (410)
T ss_pred --cc-c-c-c-------------hhhHHHHHhChhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc-C------CCCH
Confidence 00 0 0 0 0011122333222222222222222211 11111121111100 0 0000
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceee
Q 017193 224 QDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVY 303 (375)
Q Consensus 224 ~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (375)
.....+.. .......+|.++++++.||+++|+++..+.+++.++.+......+.. ..........+....++..+..
T Consensus 269 ~~a~~~~~--~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 269 GFAANYNI--GAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 00111221 11244568899999999999999988777766666555444333322 2233333445555677889999
Q ss_pred ccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 304 APEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 304 ~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
..+..+++.+..+.++.+.+ +|+.+.|.+.+.+.|.
T Consensus 346 ~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 346 ALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 99999999887777777765 8999999998887773
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-13 Score=129.22 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=150.6
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc----
Q 017193 4 SVAGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM---- 75 (375)
Q Consensus 4 ~i~~~~~---~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~---- 75 (375)
.++++++ ++++|++.++++|+++|+|.|.. +...+++.|+.|+++|.+.++..+..+.+|..+++.++..+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455443 46789999999999999999974 667788889888888877888999999999999987764322
Q ss_pred C----------------C------CchHHHHHH-HhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCC
Q 017193 76 P----------------R------LNWRWLLAL-SSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTN 131 (375)
Q Consensus 76 ~----------------~------~~WR~~f~~-~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~ 131 (375)
+ . .+||++|.. ..+..++.+ +....+||.|. .+.+
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~---------------- 240 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHS---------------- 240 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccc----------------
Confidence 0 0 256667754 333333332 22333454221 0000
Q ss_pred CCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhh-hhhhhh
Q 017193 132 LPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTS-ELNSEE 210 (375)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 210 (375)
++.. ++..++.+.+++.+..+...+..+... ...++...|.+ ++..+.
T Consensus 241 --------------~~~~--------------~~~~~~~~~ll~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~~~ 289 (438)
T PRK10133 241 --------------DAKQ--------------GSFSASLSRLARIRHWRWAVLAQFCYV---GAQTACWSYLIRYAVEEI 289 (438)
T ss_pred --------------cccc--------------cchhhhHHHHHhCchHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhc
Confidence 0000 000011223344333222222111111 11122222222 111100
Q ss_pred hhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 017193 211 ARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGAR 290 (375)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (375)
.+.+............++.++|.++++++.||+|||+++..+.+++...........+. ..........
T Consensus 290 ----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g 358 (438)
T PRK10133 290 ----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCS 358 (438)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 01111111222344556778899999999999999998877665554433333222221 1122222333
Q ss_pred HHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 291 MFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 291 ~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
++....++..+....|.+|.+ .+++.++.. ++.+++.+.|.+.+.+.+..+
T Consensus 359 lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred HHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 444556778888889998875 566767665 455677788877776656544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=130.08 Aligned_cols=290 Identities=14% Similarity=0.060 Sum_probs=160.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRW 82 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~ 82 (375)
.++.++.++++|++.++++|++.|.+.+.. +....+..|..|+++|++..++.....++|..+++.++..+.. .+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~ 162 (395)
T PRK10054 84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL 162 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence 345566778889999999999988876653 5667889999999999999999999999999999988877653 68999
Q ss_pred HHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 83 LLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 83 ~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+|.+.++..++.++ ...++||+++- ++ ++.++ .
T Consensus 163 ~f~~~~~~~~i~~i~~~~~~~~~~~~----~~-~~~~~----------------------------~------------- 196 (395)
T PRK10054 163 PFWLAAICSAFPLVFIQIWVQRSEKA----IA-TETGS----------------------------V------------- 196 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----cc-cchhh----------------------------h-------------
Confidence 99988777665533 33445554320 00 00000 0
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
.+.++.++++........ .+...+.+.....+.+.+..... ....+.........+..+..++
T Consensus 197 ------~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~ 259 (395)
T PRK10054 197 ------WSPSVLLQDKALLWFTCS---GFLASFVSGAFASCISQYVMVVA--------DSDFAEKVVAVVLPVNAAMVVS 259 (395)
T ss_pred ------hhhhhhccCceehHHHHH---HHHHHHHHHHhhhhHHHHHHHhc--------ccchHHHHHHHHHHhhhhheee
Confidence 000011111111111111 11111111111011111100000 0000011111111222233345
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH-QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIA 320 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~ 320 (375)
.....+.+.||.+||+.+..+.....+....+... .+.+...+.............+....+..|..|++.|++..+..
T Consensus 260 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 339 (395)
T PRK10054 260 LQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ 339 (395)
T ss_pred ehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence 55677889999999998877665544433333222 22221112222222222222345567788999999999998864
Q ss_pred HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 017193 321 SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLS 358 (375)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (375)
..+++|..++|.+.+.+.+..+....+.+.+.+..++
T Consensus 340 -~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 376 (395)
T PRK10054 340 -SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAA 376 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHH
Confidence 4677899999999988888765444444444443333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-13 Score=130.69 Aligned_cols=263 Identities=15% Similarity=0.075 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhhhcCCCc-hhHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-------CCCchHHHHHH
Q 017193 16 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMLMVVISTFWTLGTIFEAALAWMVM-------PRLNWRWLLAL 86 (375)
Q Consensus 16 ~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~-p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~~WR~~f~~ 86 (375)
...+++.+++.+++.+.. ....++..|.. ++++|++..++.+.+..+|.++++.+...+. +..+||+.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 456778888888877753 34456778877 5789999999999998888877765543322 24689999998
Q ss_pred HhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccccccc
Q 017193 87 SSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKS 165 (375)
Q Consensus 87 ~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (375)
.++.+++.. +..+..+|+|+.. + + +++. +. +
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~~----~-~------------------------------~~~~----~~---------~ 210 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSEI----P-K------------------------------NIEK----KL---------S 210 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCCC----C-c------------------------------cccc----CC---------C
Confidence 888776664 3455567755200 0 0 0000 00 0
Q ss_pred chhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHH
Q 017193 166 GSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLL 245 (375)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 245 (375)
..+.++.+++.+..+...... +.....++....+.+++.... . . +.........+..+..+++.++
T Consensus 211 ~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~-~-~~~~~~~~~~~~~i~~ii~~~~ 276 (437)
T TIGR00792 211 LKQIFKALFKNDQLLILCLAY---LFYNLAFNIKNGVQVYYFTYV---------L-G-DPELFSYMGSIAIVAGLIGVLL 276 (437)
T ss_pred HHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHHcchhheeEeee---------c-C-ChHHHHHHHHHHHHHHHHHHHH
Confidence 011234444433322222111 111122222111122111100 0 0 0111111123345667888999
Q ss_pred HHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHhhhhcccceeecccccc-------ccchhHHH
Q 017193 246 SAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ-PVTLTTVLLFGARMFANGTFAVACVYAPEVYP-------TSLRATGA 317 (375)
Q Consensus 246 ~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P-------~~~R~~~~ 317 (375)
.+++.||+|||+.+..+..+..+..+...... +.+...+..+...+......+..+++.+|..| .+.+++..
T Consensus 277 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 356 (437)
T TIGR00792 277 FPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY 356 (437)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence 99999999999988777665554433333222 22222222222222223345667778888765 56789999
Q ss_pred HHHHHHHhHHHhHHHHHHHHhhc
Q 017193 318 GIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
|+.+...++++.+++.+.+.+.+
T Consensus 357 ~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 357 SVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-13 Score=129.16 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc-ch--hH-HHHHHHHHHHHhhhhcccceeeccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ-PV--TL-TTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
.+..+..+++.+..+.+.||+|||+++..+.++..+......... +. .. ..+..+..........+....+.+|.+
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~ 337 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV 337 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445567778889999999999999998888776655443333222 11 11 111111121211122344567889999
Q ss_pred cccchhHHHHHHH-HHHhHHHhHHHHHHHHhhcccc------hhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017193 309 PTSLRATGAGIAS-AVGRIGGMVCPLVSVGLVTGCH------QTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 309 P~~~R~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
|++.|++++|+.+ ....+++.++|.+.+.+.+..+ ....+.+.+++.+++++..+++.||+++.
T Consensus 338 p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 338 PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999999999997 4567899999999988877543 22345566666677777777777888764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-13 Score=123.81 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|++.|++.|.. +....+..|..++++|++..++.+.+..+|..+++.++..+.+..+||
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 162 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR 162 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 3556677778899999999999999998864 455667789999999999999999999999999998887777778999
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCch
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETPK 106 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp~ 106 (375)
+.|.+.++..++. ++..+++||+|+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 9999987766554 344556788764
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-16 Score=140.66 Aligned_cols=103 Identities=24% Similarity=0.377 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hH
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN-WR 81 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-WR 81 (375)
+++.++++++.+|++++++|.+.|+|++.. +.+++.+++.+|.++|+++.++++.+.++|..++.+++..+.+..+ ||
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 467889999999999999999999999984 8889999999999999999999999999999998888777766555 99
Q ss_pred HHHHHHhHHHHHHH-HHHhcCcCCch
Q 017193 82 WLLALSSVPSFAVL-LLYGLAPETPK 106 (375)
Q Consensus 82 ~~f~~~~i~~ll~~-~~~~~~pESp~ 106 (375)
|.|...++.+++.. +...+.+|.+|
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999998888774 45556677664
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-13 Score=125.20 Aligned_cols=269 Identities=18% Similarity=0.173 Sum_probs=149.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--chH
Q 017193 5 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRL--NWR 81 (375)
Q Consensus 5 i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~WR 81 (375)
++.++. .+++++.+++.|++.|++.|.. +....++.|+.| ++|+++.+..+....+|..+++.+...+.+.. +||
T Consensus 77 ~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~ 154 (355)
T TIGR00896 77 AGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQ 154 (355)
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 334444 6688999999999999999864 455667788886 68999999999999999999888766655443 499
Q ss_pred HHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccccc
Q 017193 82 WLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSST 161 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
+.|.+.++..++.. ..++||+++- ++ ++ ++.. .+
T Consensus 155 ~~f~~~~~~~~~~~--~~~~~~~~~~-------~~-------------~~--------------~~~~----~~------ 188 (355)
T TIGR00896 155 QALAWWALPALLAL--LAWIPQVRRR-------VA-------------AN--------------QTTT----RL------ 188 (355)
T ss_pred HHHHHHHHHHHHHH--HHHhhhhccc-------cC-------------CC--------------CCCC----CC------
Confidence 99887665543332 2234444310 00 00 0000 00
Q ss_pred ccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhh
Q 017193 162 VNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELP 241 (375)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (375)
..++.++++.... .....+.....++....+.|.+..+. +.+.........+..++.++
T Consensus 189 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~~-----------g~~~~~~g~~~~~~~~~~i~ 247 (355)
T TIGR00896 189 -------TPVRIWRSPLAWQ---VTVFFGLQSGLYYSLIGWLPAILISH-----------GASAATAGSLLALMQLAQAA 247 (355)
T ss_pred -------CCchhhcCHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHH
Confidence 0011222221111 11112223334444444444332210 11111112223345677788
Q ss_pred HHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecc-ccccccchhHHHHH
Q 017193 242 GLLLSAVIVDRV-GRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAP-EVYPTSLRATGAGI 319 (375)
Q Consensus 242 g~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-El~P~~~R~~~~g~ 319 (375)
+.++.+++.||+ +||+.+..+.++..+.........+..... ......++....++....... +..+++.+++..++
T Consensus 248 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 326 (355)
T TIGR00896 248 SALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAM 326 (355)
T ss_pred HHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999 566555555444444333322221111111 111122222222333334444 34456778899999
Q ss_pred HHHHHhHHHhHHHHHHHHhhcccc
Q 017193 320 ASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
.+..+++++.++|.+.+.+.+..+
T Consensus 327 ~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 327 AQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998887776544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-13 Score=124.59 Aligned_cols=278 Identities=13% Similarity=0.039 Sum_probs=150.5
Q ss_pred hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHH
Q 017193 13 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPS 91 (375)
Q Consensus 13 ~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ 91 (375)
++|++.+++.|++.|++.+.. +....+..++ +++|++..+......++|..++++++..+.+++|||..|++.++..
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 578999999999999987764 5555566665 4557777777778888999999999988888889999998877544
Q ss_pred HHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhH
Q 017193 92 FAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFL 171 (375)
Q Consensus 92 ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
++..+...+.||.++. ++.+ .++ + +..++++
T Consensus 169 ~~~~~~~~~~~~~~~~----~~~~-----------------------------~~~-~---------------~~~~~~~ 199 (382)
T PRK11128 169 ASMLLGQLLRPTIMPQ----GESR-----------------------------QQE-S---------------AGWPAWK 199 (382)
T ss_pred HHHHHHHHccCCCCCc----cccc-----------------------------ccc-c---------------cccchHH
Confidence 4443333344443210 0000 000 0 0011334
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHh
Q 017193 172 MLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVD 251 (375)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d 251 (375)
+.++++.........+.. ...+.....+.+.+..+. +.+.........+..+..++..++.+.+.|
T Consensus 200 ~i~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 265 (382)
T PRK11128 200 ALLKEPTVWRFLLCVSLL---QGSHAAYYGFSAIYWQAA-----------GYSASTIGYLWSLGVVAEVLIFAFSNRLFR 265 (382)
T ss_pred HHHcChhHHHHHHHHHHH---HHHhHhHHHHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443322222211111 111111111111111110 111111111222445566778888999999
Q ss_pred hhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHH-hHHHhH
Q 017193 252 RVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVG-RIGGMV 330 (375)
Q Consensus 252 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~-~~~~~~ 330 (375)
|.|+|+.+..+.+...+..+.....++.+...+..+...+......+....+..+. |++.+++.+++.+... .++..+
T Consensus 266 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i 344 (382)
T PRK11128 266 RWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAI 344 (382)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998777666555444333333333222222222222111223344556666 4555788888876554 456678
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHH
Q 017193 331 CPLVSVGLVTGCHQTAAIFLLAVVIVL 357 (375)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (375)
+|.+.+.+.+..+. ..++..+++.++
T Consensus 345 g~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 345 MTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 89888888776653 344444444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-12 Score=116.62 Aligned_cols=275 Identities=13% Similarity=0.130 Sum_probs=156.3
Q ss_pred HhhhhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Q 017193 11 AFSLNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP------------- 76 (375)
Q Consensus 11 ~~~~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~------------- 76 (375)
+...+|+.+++.=++.|.|.+. .+.+.+|+....|+|++.+.+++.+.+.++|.+++|.++.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 4567899999999999999997 57889999999999999999999999999999999998765441
Q ss_pred ---CCchHHHHHHHhHHHHHHHHHHh--cCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCC
Q 017193 77 ---RLNWRWLLALSSVPSFAVLLLYG--LAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVII 151 (375)
Q Consensus 77 ---~~~WR~~f~~~~i~~ll~~~~~~--~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
..+||+++++.+...++..+.+. .+||..+ +.++. .++++ .
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~---------------------------~~~~~-~ 130 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVAR---------------------------VSSGD-T 130 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccc---------------------------ccccc-c
Confidence 14799999865544333333322 3455321 00000 00000 0
Q ss_pred CCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHH
Q 017193 152 PEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVN 231 (375)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (375)
.++ +..++.++..-..+..+.+.+ .--+...|.+.+..+....+. ..+.....
T Consensus 131 ----------~~~------~~~~~~~~~~l~~~~~f~yvg---~e~~~~~w~~~yl~~~~~~g~------s~~~a~~~-- 183 (310)
T TIGR01272 131 ----------TQK------TSAFQFTHLVLGALGIFVYVG---AEVSAGSFLVNFLSDPHALGL------PEDQAAHF-- 183 (310)
T ss_pred ----------cch------hhHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCC------CHHHHHHH--
Confidence 000 011111111111111111111 111222233322211000000 01111111
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
......+..+|.++++.+.||+|+|+.+..+..++++..+......... .....+...++....++...+...|.+|.+
T Consensus 184 ~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~ 262 (310)
T TIGR01272 184 TAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH 262 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2233455678999999999999998887776665555443332222221 112222333444556677788888888875
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHH
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (375)
.+++.++. .++.+|+.+.|.+.+.+.+..+....++
T Consensus 263 -~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 263 -TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred -hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 45566664 6788999999998887777555444443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-13 Score=124.93 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=85.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+..+++.++.+++.||+|||+.+..+.++..+........++.+......+...............+.+|.+|++.|
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 349 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS 349 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence 34456678899999999999999987766665554434333333333222211111111111223445788899999999
Q ss_pred hHHHHH-HHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 314 ATGAGI-ASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 314 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
++..+. .+..+.++++++|.+.+.+.+..+....+...+++.++..++.++..++
T Consensus 350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998776 4566788999999998888776654455556666665555555544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=116.44 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=163.4
Q ss_pred HHHHHhhhcCCCch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhc--C------CCchH
Q 017193 36 CLSWFLEFIPASNR--------------------------GMLMVVISTFWTLGTIFEAALAWMVM--P------RLNWR 81 (375)
Q Consensus 36 ~~~~~~E~~p~~~R--------------------------g~~~~~~~~~~~~G~~~~~~~~~~~~--~------~~~WR 81 (375)
...|+-|.++++.+ +++++.-.....+|.++.-.+...+. . ..+-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 45788999999999 99998877777788877666554432 1 12358
Q ss_pred HHHHHHhHHHHHH-HHHHhcCcCCchh-hhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCccc
Q 017193 82 WLLALSSVPSFAV-LLLYGLAPETPKY-LCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLS 159 (375)
Q Consensus 82 ~~f~~~~i~~ll~-~~~~~~~pESp~~-l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
..+.+.++.-++. +...+++||.|+- -..+++ +-.....+++.
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~---------------------------------- 271 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-SYLRFGFKRLW---------------------------------- 271 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-hHHHHHHHHHH----------------------------------
Confidence 8888888776555 6677789998862 111110 00111111111
Q ss_pred ccccccchhhhHHhhhhhhHHHHHHHHHHHH--HhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHh
Q 017193 160 STVNKSGSSSFLMLLSTELIRTTLLLWFLFF--GNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSL 237 (375)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (375)
.++++..+.+.....++.++++- .+.+...+..+....+ +.+..++....++..+
T Consensus 272 --------~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l---------------g~s~~~l~~~~l~~~i 328 (477)
T PF11700_consen 272 --------RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL---------------GMSTTQLIVFGLVVQI 328 (477)
T ss_pred --------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCHHHHHHHHHHHHH
Confidence 01112211111122222222211 1112112211111111 1222334455677788
Q ss_pred hhhhHHHHHHHHHhhhCch--HHHHHHHHHHHH-HHHHHh-------hccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 238 AELPGLLLSAVIVDRVGRK--ISMAIMSILTFI-FLLPLL-------THQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 238 ~~i~g~~~~~~l~d~~gRr--~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.+++|+++.+++.||+|.| +++..+.+...+ +...+. ..++.+...++....+.+..+..+..-++.+|+
T Consensus 329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L 408 (477)
T PF11700_consen 329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL 408 (477)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8999999999999999988 666555444322 222222 022333333334444445556677888999999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
.|+...+.-+|+-...++..++++|.++..+.+..+....-+.+..+.++.++..++..++.|++.
T Consensus 409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 999999999999999999999999999998877665433333433344444445556666777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-12 Score=118.65 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHHH
Q 017193 16 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAV 94 (375)
Q Consensus 16 ~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll~ 94 (375)
...+++.|++.|++.+.. +....+..|..++ ++...+......++|..+++.++..+. ..+||.+|++.++.+++.
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~ 175 (396)
T TIGR00882 99 LVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALIL 175 (396)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHH
Confidence 334567789999888764 5556666665433 334445555566777777777766553 459999999988777665
Q ss_pred HHHHhc-CcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHh
Q 017193 95 LLLYGL-APETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLML 173 (375)
Q Consensus 95 ~~~~~~-~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (375)
.+..+. .||+|+. ++.+ + +.+ .+++ ++..++..+.
T Consensus 176 ~~~~~~~~~~~~~~-------~~~~----~----~~~--------------~~~~---------------~~~~~~~~~~ 211 (396)
T TIGR00882 176 MLLLMFAKPKAPSS-------ATVA----N----ALG--------------ANAS---------------AFSLKLALEL 211 (396)
T ss_pred HHHHHHhCCCCchh-------hhhh----c----ccc--------------cccC---------------CCCHHHHHHH
Confidence 443333 4554421 0000 0 000 0000 0001123344
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 017193 174 LSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRV 253 (375)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~ 253 (375)
++++........ .+.....+.....+.+.+..... ...............+..+..+++....+.+.||+
T Consensus 212 l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~-------~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~ 281 (396)
T TIGR00882 212 FRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFF-------ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI 281 (396)
T ss_pred HcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443322111111 11111111111111111110000 00000111111222344556677788899999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHH-HHHHHhHHHhHHH
Q 017193 254 GRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGI-ASAVGRIGGMVCP 332 (375)
Q Consensus 254 gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~-~~~~~~~~~~~~~ 332 (375)
|||+.+..+.++.++.........+.+......+...............+..|..|++.|+++.+. .+....++++++|
T Consensus 282 g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~ 361 (396)
T TIGR00882 282 GAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLS 361 (396)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHH
Confidence 999988776665554333333333333222222222221111222344577888999999998877 4677889999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 017193 333 LVSVGLVTGCHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
.+.+.+.+..+....+.+.+++.++.++...
T Consensus 362 ~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 362 TLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9988888866655566666666655555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-13 Score=127.09 Aligned_cols=345 Identities=16% Similarity=0.099 Sum_probs=181.6
Q ss_pred hhHHHHHHHHhhhhHHHHH-HHHHHhhhcCCCch-hHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 2 LASVAGLLSAFSLNYLSLV-TLRGLVGIGLGSGP-VCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~-~~R~i~G~~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
+.+++-+++.|++++++++ -.=++.|+|.|..+ ...+.+.. .-+|+|+.++++.....++|..+-+.+.-.+.+..|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 4567888899999998765 66788899998753 33444554 446678999999999999999888888777788899
Q ss_pred hHHHHHHHhHHHHHHH-HHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCc--ccCCCC-CC
Q 017193 80 WRWLLALSSVPSFAVL-LLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDE--EVIIPE-HT 155 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~-~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 155 (375)
||..+.+.+...+-.. .....-|.+|+-... +++.... .-+..+..+.+......+......+ ..+..+ ++
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPN----EEKDLRN-SAASVESTPKPVELRISERDSGLKKLSLSNLATLKR 273 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch----hhhhhcc-ccccccccccccccccccCCCCCCcccccchhhhhh
Confidence 9999988876665443 334444544432211 1111100 0000000000000000000000000 000000 00
Q ss_pred Ccccccccccchhhh---HHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHH
Q 017193 156 PLLSSTVNKSGSSSF---LMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNV 232 (375)
Q Consensus 156 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (375)
...+.+....+.... +++++. +..+...+....+.+.|+.+.++.+.+..+. +.++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~-----------g~~~~~aa~l~ 339 (509)
T KOG2504|consen 274 GPDKWRNSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL-----------GLSSNDAAFLL 339 (509)
T ss_pred CCccccccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCChhhhHHHH
Confidence 000000000000011 123332 1111122222334455555555555443211 12222223334
Q ss_pred HHHHhhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVG--RKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~g--Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
.+.++..+++-++.|++.|+-. ++.+...+.+++++..+......+............++..........+..|+.+.
T Consensus 340 Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~ 419 (509)
T KOG2504|consen 340 SIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL 419 (509)
T ss_pred HHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 4667888999999999999977 33444555555555443322233332221211112222222223445789999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHHHhccc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTA-AIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p 367 (375)
+.-+.+.|+...+..++..++|.+.+.+.+..+.+. .++..+++.++++++ +++.|
T Consensus 420 ~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~ 476 (509)
T KOG2504|consen 420 EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL-LLILR 476 (509)
T ss_pred hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence 999999999999999999999999887777666443 344444444444433 44444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-11 Score=113.22 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=76.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN---RGMLMVVISTFWTLGTIFEAALAWMVMPRL 78 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 78 (375)
.+++.++.+++++++.+.++|++.|++.|.. +...++++|+.|+++ |+...++.....++|..+++.++..+.+..
T Consensus 89 ~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~ 168 (475)
T TIGR00924 89 LMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY 168 (475)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777788889999999999999975 667788999998764 888899999999999999999988887788
Q ss_pred chHHHHHHHhHHHHHH
Q 017193 79 NWRWLLALSSVPSFAV 94 (375)
Q Consensus 79 ~WR~~f~~~~i~~ll~ 94 (375)
+||+.|.+.++..++.
T Consensus 169 g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 169 GYHVGFNLAAVGMVIG 184 (475)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999877544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-11 Score=117.58 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=88.1
Q ss_pred hHHHHHHHHhh------hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017193 3 ASVAGLLSAFS------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM 75 (375)
Q Consensus 3 ~~i~~~~~~~~------~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~ 75 (375)
.+++.++++++ ++++.+.++|++.|+|.|.. +.+...+.+++| ++||++.++...+.++|..+.+.+...+.
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877 68999999999999998864 566677889987 78999999999999999986554443333
Q ss_pred CCCchHHHHHHHhHHHHHH-HHH--HhcCcCCchhhhhcCChHHHHHHHHH
Q 017193 76 PRLNWRWLLALSSVPSFAV-LLL--YGLAPETPKYLCTAGKMADAAHVLEK 123 (375)
Q Consensus 76 ~~~~WR~~f~~~~i~~ll~-~~~--~~~~pESp~~l~~~~~~~ea~~~l~~ 123 (375)
. .+|+..|++.++.+++. ++. ....||+|+|...++|.+|+++.+++
T Consensus 180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 180 S-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL 229 (591)
T ss_pred H-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence 2 46888888776655544 333 33467788887777777777776444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-11 Score=111.66 Aligned_cols=260 Identities=12% Similarity=-0.028 Sum_probs=138.5
Q ss_pred hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCC
Q 017193 34 PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGK 113 (375)
Q Consensus 34 ~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~ 113 (375)
+..-.+..|..++|+|+...+....+..+|.+++......+.+..+||..|++.+...++..+...+++|.++- +
T Consensus 116 ~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~-----~ 190 (390)
T TIGR02718 116 IATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA-----S 190 (390)
T ss_pred HHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC-----c
Confidence 33445678889999989888888888889999988776666777899999999887776654444444443210 0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhh
Q 017193 114 MADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNS 193 (375)
Q Consensus 114 ~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 193 (375)
.++.++ ..++++++++++..+......+......
T Consensus 191 ~~~~~~----------------------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 224 (390)
T TIGR02718 191 PEAPLA----------------------------------------------RRASLFRFFRRPLAWSLLALALLSAMTA 224 (390)
T ss_pred cccchh----------------------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 000000 0012233444333332222222221111
Q ss_pred hhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHH-hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 017193 194 FVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITS-LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP 272 (375)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~ 272 (375)
..++.. ..+++.+. +.+.........+.+ ...+.+.++.+++.||+|||+.+..+..+.......
T Consensus 225 ~~~~~~--~~~~l~~~------------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~ 290 (390)
T TIGR02718 225 VSGFGL--SKLYLVDA------------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL 290 (390)
T ss_pred HHHHHH--hhHHHHhc------------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 112221 11222110 111111111111222 344667889999999999999887665544221111
Q ss_pred -Hhhc----cchhHHHHHHHHHH-HHhhhhcccceeeccccccc-cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchh
Q 017193 273 -LLTH----QPVTLTTVLLFGAR-MFANGTFAVACVYAPEVYPT-SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQT 345 (375)
Q Consensus 273 -~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~El~P~-~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (375)
.... .+............ +......+.......+..++ +.|++.+++.+....+++.++|.+.+.+.+..+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~ 370 (390)
T TIGR02718 291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA 370 (390)
T ss_pred HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 1111 11111111111111 11112223444555555665 89999999999999999999999998887765543
Q ss_pred HHHHHHHHHHHHH
Q 017193 346 AAIFLLAVVIVLS 358 (375)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (375)
..+...+++.+++
T Consensus 371 ~~f~~~~~~~l~a 383 (390)
T TIGR02718 371 GGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-11 Score=114.28 Aligned_cols=298 Identities=17% Similarity=0.113 Sum_probs=176.8
Q ss_pred hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSF 92 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~l 92 (375)
.+.+.+++.-++.|++.+.. |.-...+-|..|+++...+.++.+...++..+++|.++..+....|=.+.|.+.++--+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl 180 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL 180 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999988864 77788999999999999999999999999999999988887766677888888876544
Q ss_pred HHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHH
Q 017193 93 AVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLM 172 (375)
Q Consensus 93 l~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
+.+......+..++ +++ .+.++..+.+ ...++.
T Consensus 181 ~~i~~l~~~~~~~~----~~~-~~~e~~~~~l------------------------------------------~~G~ry 213 (524)
T PF05977_consen 181 ISILALLRWKPPPP----PSS-LPRERFFSAL------------------------------------------REGLRY 213 (524)
T ss_pred HHHHHHHHcccccc----ccc-cchhhhhhhH------------------------------------------HHHHHH
Confidence 44333222221110 000 0000000000 011222
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 017193 173 LLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR 252 (375)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~ 252 (375)
..+.+..+..+.....+. +.......+.|.+..+. .+.............+++.+.|+++.+.+.+|
T Consensus 214 v~~~~~l~~~l~~~~~~~---l~~~a~~aLlPl~a~~~----------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~ 280 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFN---LFASAVWALLPLFARDV----------LGGGASGYGLLLAAFGVGAILGALLLPRLRRR 280 (524)
T ss_pred HhcchHHHHHHHHHHHHH---HhhhHHHHhhhHHHHHH----------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333332222111 11111122233332111 01112222233345567778888888888888
Q ss_pred hCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHH
Q 017193 253 VGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCP 332 (375)
Q Consensus 253 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~ 332 (375)
+++++++..+.+..+++.+.+....+.+......++.+++.........+...+..|.++||+..++..++...+..++.
T Consensus 281 ~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs 360 (524)
T PF05977_consen 281 LSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS 360 (524)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88888777766666665555555444444444444444443444455667889999999999999999988888777888
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc-cccccC
Q 017193 333 LVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF-PFETKG 371 (375)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pet~~ 371 (375)
.+.+.+.+..+....+.+.++..+++.++.... .|+.++
T Consensus 361 ll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 361 LLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 877776666555555555554444555444433 445443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=112.47 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=73.0
Q ss_pred hhHHHHHHHHhhhhHHH-HHHHHHHhhhcCCCc-hhHHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017193 2 LASVAGLLSAFSLNYLS-LVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMLMVVISTFWTLGTIFEAALAWMVMPR 77 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~-l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 77 (375)
+..+++++++++++... ++++|+++|+|.|.. +...++++|.+|++ +|+...+++...+++|..+++.++..+.++
T Consensus 90 ~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~ 169 (489)
T PRK10207 90 VLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK 169 (489)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888776554 558999999999975 66778999999988 457788889999999999999988888888
Q ss_pred CchHHHHHHHhHH
Q 017193 78 LNWRWLLALSSVP 90 (375)
Q Consensus 78 ~~WR~~f~~~~i~ 90 (375)
.|||+.|++.++.
T Consensus 170 ~gw~~~F~i~~i~ 182 (489)
T PRK10207 170 FGYSVTYNLCGAG 182 (489)
T ss_pred hChHHHHHHHHHH
Confidence 8999999987543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-11 Score=113.93 Aligned_cols=315 Identities=15% Similarity=0.174 Sum_probs=161.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
+..++++.++.++|..+++++-.+.|+|.|........++|..|.|+|+...++...........++.++..+..+.+||
T Consensus 117 l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 117 LGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred HHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 35688999999999999999999999998765555555899999999987776665554444445555665556677999
Q ss_pred HHHHHHhHHHHHHHH--HHhcCcCCchhhhhcCCh---HHHHHHHHHHH-------------HHhCCCCCCCccccCCCC
Q 017193 82 WLLALSSVPSFAVLL--LYGLAPETPKYLCTAGKM---ADAAHVLEKMA-------------QRNGTNLPSGMLVSDETA 143 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~--~~~~~pESp~~l~~~~~~---~ea~~~l~~~~-------------~~~~~~~~~~~~~~~~~~ 143 (375)
|.|++..+...+.++ ..++-|.+ +-..+++. .|..+.++.+- ..+-...+. .+.
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~------~~W 268 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPY------YPW 268 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCC------CCC
Confidence 999998776544432 33344433 22222222 12222222210 000000000 000
Q ss_pred CCCcccCCCCC-------CCccccccc-ccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHH-Hhhhhhhhhhhhcc
Q 017193 144 TPDEEVIIPEH-------TPLLSSTVN-KSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVI-LLTSELNSEEARCG 214 (375)
Q Consensus 144 ~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 214 (375)
+........-. -...|.... +.+.-. ..+|+.+ |......+..+...+.||+.. +|.+....-
T Consensus 269 ~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P-~~Lf~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v----- 340 (599)
T PF06609_consen 269 KSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFP-HRLFKDR--RGFAALLVISFISGMNFFSVNILWPQQVVNV----- 340 (599)
T ss_pred CCccchhhHHHHHHHHHHHHHhhhhccCCCCcCC-HHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 00000000000 000000000 000001 1344331 222222333334455566654 343332210
Q ss_pred cchhhhccccch----hhHHHHHHHHhhhhhHHHHHHHHHhhhCchH-HHHHHHHHHHHHHHHHhh--ccchhHHHHHHH
Q 017193 215 STLLLLEHAQDA----SLYVNVFITSLAELPGLLLSAVIVDRVGRKI-SMAIMSILTFIFLLPLLT--HQPVTLTTVLLF 287 (375)
Q Consensus 215 ~~~~~~~~~~~~----~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 287 (375)
..++. .........+++...|.++.+.+..++||-| .++.+.....++.-++.. .++......+.+
T Consensus 341 -------f~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~ 413 (599)
T PF06609_consen 341 -------FGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLV 413 (599)
T ss_pred -------ccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHH
Confidence 00100 0111122345566678888889998888744 444444433332222222 122222223333
Q ss_pred HHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 288 GARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
..+++..+...+..+..+-..|++.-+++.|+...+..+||.++.-++..++
T Consensus 414 l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 414 LAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333455666677899999999999999999998888877765544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-10 Score=110.02 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=70.1
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 4 SVAGLLSAFSL-NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 4 ~i~~~~~~~~~-~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
.++..++++++ +...+.++|+++|++.|.. +....++.|+.|+++ |....+++..+.++|..+++.++..+.+..|
T Consensus 99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556666664 5667788999999999874 566678999998654 4456678888999999999999888888889
Q ss_pred hHHHHHHHhHHHHH
Q 017193 80 WRWLLALSSVPSFA 93 (375)
Q Consensus 80 WR~~f~~~~i~~ll 93 (375)
||+.|.+.++..++
T Consensus 179 ~~~~F~i~~i~~~i 192 (500)
T PRK09584 179 WSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998754443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-11 Score=112.10 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRW 82 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~ 82 (375)
-++.++++++++++..+.+.|++.|+++|+......|+.+++|+++|+++.++...+..+|.+++++++.. ...+|||+
T Consensus 102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~ 180 (511)
T TIGR00806 102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence 46788899999999999999999999999866667899999999999999999999999999999998877 55679998
Q ss_pred HHHHHh---HHHHHHHHHHhcCcC
Q 017193 83 LLALSS---VPSFAVLLLYGLAPE 103 (375)
Q Consensus 83 ~f~~~~---i~~ll~~~~~~~~pE 103 (375)
.+-+.. ....+.++.-+++|-
T Consensus 181 y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 181 YSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 765542 222333556667783
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=118.20 Aligned_cols=89 Identities=16% Similarity=0.292 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC----------------
Q 017193 16 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRL---------------- 78 (375)
Q Consensus 16 ~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~---------------- 78 (375)
+..++++|+++|+|.|.. +...+|+.|++|+++|++..++++....+|.+++++++..+...+
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~ 251 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT 251 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 567889999999999985 667899999999999999999999999999999998876654211
Q ss_pred ------chHHHHHHHhHHHHHHHHHHhcCcCC
Q 017193 79 ------NWRWLLALSSVPSFAVLLLYGLAPET 104 (375)
Q Consensus 79 ------~WR~~f~~~~i~~ll~~~~~~~~pES 104 (375)
+||..|++.++..++..+..+++||.
T Consensus 252 dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 252 DPRWIGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 27888998888887766656667765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-10 Score=100.71 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=104.6
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceee
Q 017193 224 QDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVY 303 (375)
Q Consensus 224 ~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (375)
++.++.......++.+++|+++.+++.||+|-|+++..+.++..+..+............++......+..+..+..-+|
T Consensus 286 s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy 365 (438)
T COG2270 286 SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSY 365 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456666778888999999999999999999988777665544433332222222222333334445556677888999
Q ss_pred ccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 017193 304 APEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKRI 374 (375)
Q Consensus 304 ~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 374 (375)
.+++.|++.-+.-+|+-+..++..++++|..+..+.+..+.....+...++.+..++..+...|+.+.++.
T Consensus 366 ~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~~ 436 (438)
T COG2270 366 LARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRREA 436 (438)
T ss_pred HHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCccc
Confidence 99999999999999999999999999999998877665554444444444444455555555555555544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=118.06 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVV-ISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPS 91 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ 91 (375)
++...++++|++.|++.+.. .....++.|.+|++.||+..++ ++.+...|.+.....++......+|+.+++...+++
T Consensus 340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 419 (490)
T PRK10642 340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA 419 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45777889999999877654 3455677899999999998886 566555554443344444333346898888777888
Q ss_pred HHHHHHHhcCcCCchhhhhc-----CChHHHHHHHHHHH
Q 017193 92 FAVLLLYGLAPETPKYLCTA-----GKMADAAHVLEKMA 125 (375)
Q Consensus 92 ll~~~~~~~~pESp~~l~~~-----~~~~ea~~~l~~~~ 125 (375)
++.++..+++||||+|+..| ||+|||+++++|++
T Consensus 420 ~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 420 VIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 77777777889999999865 99999999999886
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=102.30 Aligned_cols=101 Identities=24% Similarity=0.242 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCc
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP---RLN 79 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~ 79 (375)
+.++-++-++++||..+++.|++.|+.-|...+.-++++|+.++|+|++.++..+..+.+|.+++|.++..... ..+
T Consensus 108 va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g 187 (451)
T KOG2615|consen 108 VALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG 187 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc
Confidence 34556667778899777777999999999877788999999999999999999999999999999998766543 111
Q ss_pred hHHHHH----HHhHHHHH-HHHHHhcCcCC
Q 017193 80 WRWLLA----LSSVPSFA-VLLLYGLAPET 104 (375)
Q Consensus 80 WR~~f~----~~~i~~ll-~~~~~~~~pES 104 (375)
+.+|. +..+.... +....+++||+
T Consensus 188 -~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 188 -SYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 12222 22223333 44567789999
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=91.17 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=93.8
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
++.+++....+++.||+|||+.+..+.....+..+......+.+......+..........+..+.+..|.+|++.|+++
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA 88 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence 45567788899999999999998877666655544443333333222223333333333456677889999999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
.++.+...++++.++|.+.+.+.+..+....+.+.+.+..++.+..+++.|||
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999888776654444556666666667777777777775
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-10 Score=106.02 Aligned_cols=282 Identities=12% Similarity=0.072 Sum_probs=146.7
Q ss_pred hhHHHH-HHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHH---HHHHHHHHHHHHHhcCCCchHHHHHHHh
Q 017193 14 LNYLSL-VTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFW---TLGTIFEAALAWMVMPRLNWRWLLALSS 88 (375)
Q Consensus 14 ~~~~~l-~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~---~~G~~~~~~~~~~~~~~~~WR~~f~~~~ 88 (375)
++.... .+++++.+++.+. ..+.-.++.|..+ +++....+.....+ .+|.++++.++....+..+||..|++.+
T Consensus 117 ~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 117 VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 444444 4588888888776 4666688899988 55544433333344 4799999888887777789999999988
Q ss_pred HHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchh
Q 017193 89 VPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSS 168 (375)
Q Consensus 89 i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (375)
...++..+...++||.+.....+.+.++.. ...+. .....+ ..++...
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~-~~~~~-----------------------------~~~~~~--~~~~~~~ 243 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTYLEM-NMALL-----------------------------TLGVLA--NVKVQIL 243 (468)
T ss_pred HHHHHHHHHHHhcccccccccccccccchh-hhhhh-----------------------------hhhHHH--HHHHHHH
Confidence 777666666677888642100000000000 00000 000000 0000011
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHH
Q 017193 169 SFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAV 248 (375)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 248 (375)
+....++++...+.+...+ + + |. ..+........... ...+.+...........+++.+++..+.+.
T Consensus 244 ~l~~~l~~~~i~~~l~fif--l-~---~~----~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~ 310 (468)
T TIGR00788 244 GLRGAIQLLEIAKPLIFIF--L-S---YA----NLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDR 310 (468)
T ss_pred HHHHHHhcHHHHHHHHHHH--H-H---Hh----hcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 1222222222111111111 1 0 00 00000000000000 001112222233334456777888888898
Q ss_pred HHhhhCchHHHHHHHHHHHHHHHHHh-h----c----cchh-HHHHHHHHHHHHhhhhcccceeeccccccccchhHHHH
Q 017193 249 IVDRVGRKISMAIMSILTFIFLLPLL-T----H----QPVT-LTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAG 318 (375)
Q Consensus 249 l~d~~gRr~~~~~~~~~~~~~~~~~~-~----~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g 318 (375)
+.+|++.|+++..+.++..+..+... . . .+.. ................+.....+.+|+.|++.+++.++
T Consensus 311 ~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 311 FLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFA 390 (468)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHH
Confidence 88999999998887776655443211 0 0 0111 11111111112222233456789999999999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcc
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
+.+.+.++++.+++.+...+.+.
T Consensus 391 l~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 391 LLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998766655543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-09 Score=98.35 Aligned_cols=135 Identities=13% Similarity=-0.020 Sum_probs=77.7
Q ss_pred hhhhhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHhhcc----c-----------------hhHHHHHHHHHHHHhh
Q 017193 237 LAELPGLLLSAVIVDRVGR-KISMAIMSILTFIFLLPLLTHQ----P-----------------VTLTTVLLFGARMFAN 294 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gR-r~~~~~~~~~~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~ 294 (375)
+...+.+++--.+.+|+|+ |.+...+.++.++++....... + .....+.....++.-.
T Consensus 316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A 395 (477)
T TIGR01301 316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA 395 (477)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence 3334555566778888985 6666666555555444433111 0 0111222222233334
Q ss_pred hhcccceeeccccccccch--hHHHHHHHHHHhHHHhHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 295 GTFAVACVYAPEVYPTSLR--ATGAGIASAVGRIGGMVCPLVSVGLVTGCH--QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 295 ~~~~~~~~~~~El~P~~~R--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
..+.++|++.+|..|++.| |.-+|+-|.+--+...+.....+.+....+ ....+.+-++..+++++..+++.|.++
T Consensus 396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4567899999999996545 777888888776666666554444333222 223334445556677788888888876
Q ss_pred C
Q 017193 371 G 371 (375)
Q Consensus 371 ~ 371 (375)
.
T Consensus 476 ~ 476 (477)
T TIGR01301 476 V 476 (477)
T ss_pred C
Confidence 4
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=102.44 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=94.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....++..++.++.|.+.||+|||+.+..+.++..+..+......+.+...+..+..........+....+..|.+|++.
T Consensus 47 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 34456667888999999999999999888776665554444333333322222222222222334556678899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
|+++.++.+....+++.++|.+.+.+.+..+....+++.+.+.++..+..++..||++.+
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999998887666554444455555666566656666667776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=108.47 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=92.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++.++|.++.|+++||+|||+.++.+.++..++.+......+.+...+.-++.+++..+..+..+++.+|.+|.+.
T Consensus 209 s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34457778999999999999999999888776665554444433333333333344444444556788999999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhccc------------chhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGC------------HQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
|++..++......+|+++++.+...+.... ..+..++++.++..+..++..++.||+
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999888888888876554333211 123344444444444445556667887
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=102.26 Aligned_cols=138 Identities=12% Similarity=-0.010 Sum_probs=91.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++..++.+..+++.||+|||+++..+.++..+.........+.......-+..+....+..+....+.+|.+|++.
T Consensus 50 s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (412)
T TIGR02332 50 TLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF 129 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence 34456667788889999999999999887776655554444433333322222223333333334555678899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTG------CHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.++.+....++..+++.+...+.+. .+....+++.++..++..++.+++.||+.
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 99999999998889998988887665431 22224445555555555566666677775
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-08 Score=95.56 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=66.9
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeecccccc----
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYP---- 309 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P---- 309 (375)
.+..+++..+.+++.||+|||+.+..+.++..+....... .++.+...+..+...+......+..++..+|..+
T Consensus 274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~ 353 (444)
T PRK09669 274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK 353 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3555678888899999999999887766544432222221 2222222222223333333455678888888875
Q ss_pred ---ccchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 310 ---TSLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 310 ---~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
.+..+...|..+.+.+++..+++.+.+.+++
T Consensus 354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888889999898888776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-08 Score=90.57 Aligned_cols=278 Identities=21% Similarity=0.197 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHhHHHH
Q 017193 15 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRL-NWRWLLALSSVPSF 92 (375)
Q Consensus 15 ~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~WR~~f~~~~i~~l 92 (375)
+...++.+=.+.|.|++.. ...+..+=|.+|+|. +.+++.+.....+|..+++.++..+..+. +||....+=+.|++
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~al 176 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLAL 176 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHH
Confidence 6677888999999999864 556788889999876 78999999999999999988877766555 79999999899998
Q ss_pred HHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHH
Q 017193 93 AVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLM 172 (375)
Q Consensus 93 l~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
+.++.|+ |...|.. .+ + .+.+. + +-..
T Consensus 177 lAl~~Wl--Pq~~r~~------~~-------------~--------------~~~~~------------~------~~~~ 203 (395)
T COG2807 177 LALLIWL--PQALREQ------AA-------------S--------------IATKL------------V------SVRK 203 (395)
T ss_pred HHHHHHh--hhccccc------cc-------------c--------------ccccc------------c------cccc
Confidence 8766654 3333210 00 0 00000 0 0001
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 017193 173 LLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR 252 (375)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~ 252 (375)
+++++. .+.+...+-.+++.||...-|.|.+..+.. .+......-..+..+.+++.++....+.+|
T Consensus 204 vw~~~~---aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~~~~~~ll~P~la~R 269 (395)
T COG2807 204 VWRSPL---AWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLAQLPTALLIPLLARR 269 (395)
T ss_pred cccCch---hHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233321 111222233477889999999887654321 111111112234567778899999999997
Q ss_pred h-CchHHHHHHHHHHHHHHHHH--hhccchhHHHHHHHHHHHHhhhhcccceeeccccccc-cchhHHHHHHHHHHhHHH
Q 017193 253 V-GRKISMAIMSILTFIFLLPL--LTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT-SLRATGAGIASAVGRIGG 328 (375)
Q Consensus 253 ~-gRr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-~~R~~~~g~~~~~~~~~~ 328 (375)
. .||+........+.+....+ ...+..... + +..+....++++........-.++ +.-++-.|+...+|++-+
T Consensus 270 ~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~--~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA 346 (395)
T COG2807 270 SKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-A--LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA 346 (395)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-H--HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH
Confidence 5 56666554444333322222 222222221 1 222222234445444444444333 445566778888899999
Q ss_pred hHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHH
Q 017193 329 MVCPLVSVGLVTGCHQTAAIF-LLAVVIVLSIVCIL 363 (375)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 363 (375)
..+|.+++.+.|..+++...+ .++...++..+..+
T Consensus 347 a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 347 AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887765443 34444444444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-09 Score=101.72 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=82.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....++..++.++.|++.||+|||+++..+.++.++..+......+.....+.-+..+++. +.......+.+|.+|++.
T Consensus 78 ~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~ 156 (476)
T PLN00028 78 IASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKI 156 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhh
Confidence 3445566788999999999999999888777666555444443333332222222222222 222233446789999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhc----c-----cchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVT----G-----CHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
|+++.|+.+..+++++.+++.+.+.+.. . .+....+++.+++.++..+..++++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998888887777666553321 1 1222345555666655555555554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-10 Score=103.78 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=92.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++.+++.++.+.+.||+|||+.+..+.++..+..+......+.+...+..+...+......+....+.+|.+|++.
T Consensus 59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (398)
T TIGR00895 59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence 34456667889999999999999999888776665554444433333322222222222223344667789999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
|+++.++......+++.++|.+.+.+.+..+....+.+.+.+..+..+..+.+.||+
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 999999999999999999998887766654433344444445555555555556665
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=101.12 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
.....++.+++.++.|++.||+|||+++..+.++..+..+......+.+...+..+..........+....+.+|.+|++
T Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 135 (406)
T PRK11551 56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR 135 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence 34455677888999999999999999988877665554444333333333222223333322233455677899999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
.|+++.++.+....+++.+++.+...+.+..+....+++.+++.++..+...++.||+.
T Consensus 136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999888999998887655544433333445555444444444455566653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=100.87 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=88.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|.+.||+|||+++..+.++..+..+.....++.+......+..+.......+....+..|.+|++.
T Consensus 54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 34456677889999999999999999887766655554444333333322222233333323344556778899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.++.+....++..+++.+...+.+..+ .+...+...++..+..++.....||++
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999998888766554332 233333333333333444444567754
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-09 Score=98.33 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=91.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+...++.++.+.+.||+|||+.+..+.++..+..+......+.+...+.-+..........+....+.+|.+|++.|
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~ 142 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence 44566677888999999999999999888777766544443333333322322333333333445667788999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+++.++......++..++|.+.+.+.+..+....+++.+.+.+++.+......||++
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999998887766544434444545444444444444457754
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-09 Score=99.17 Aligned_cols=139 Identities=19% Similarity=0.128 Sum_probs=91.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....++..++.++.|.+.||+|||+.++.+.....+..+.....++.+......+..+.......+..+.+..|.+|++.
T Consensus 55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 34456667788899999999999999888776665554444333333322222222222222223456677889999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
|.++.++......++..++|.+...+.+..+....+++.+++.+++.+..++..||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999998888888888888887766554443345556666666666656666777753
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-09 Score=100.38 Aligned_cols=135 Identities=14% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+..+++.+..|.++||+|||++++.+.+...+..+.+...++.+.................+....+.+|.+|++.|
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 130 (395)
T PRK10054 51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK 130 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence 34456677888899999999999988877665555444333333332222211122111112234566778999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+++.|+.+...++++.++|.+.+.+.. .+....+.+.+++.++..+...+..||+
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988876654 3333455555555555544444444444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-09 Score=100.83 Aligned_cols=137 Identities=13% Similarity=0.034 Sum_probs=88.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
...++..++.++.|.+.||+|||++++.+.++..+..+......+.+.....-+..........+....+..|.+|++.|
T Consensus 53 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 132 (471)
T PRK10504 53 SYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQY 132 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHH
Confidence 33455677889999999999999998876655554443333333332222222222222223345567788999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+++.|+.+....++..++|.+.+.+.+..+....+.+...+..+..+......|+.+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999998877766554333444444444455555555555543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-08 Score=87.25 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=155.8
Q ss_pred hhhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC---------------
Q 017193 13 SLNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP--------------- 76 (375)
Q Consensus 13 ~~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--------------- 76 (375)
..+|.+++++-|+.|.|+|- ...+.+|++-.-|++....-+.+.|.+.++|.+++|+++.....
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 35888999999999999997 47778899888888777777899999999999999987644322
Q ss_pred ----CCchHHHHHHHhHHHHHHHHHHh--cCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccC
Q 017193 77 ----RLNWRWLLALSSVPSFAVLLLYG--LAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVI 150 (375)
Q Consensus 77 ----~~~WR~~f~~~~i~~ll~~~~~~--~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
...||+++...+...+++.+... ..||-+. .+.++.+
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------------------------------------~~~~~~~- 223 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------------------------------------AAPSLGA- 223 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc------------------------------------ccccccc-
Confidence 11367776665544444333221 1111110 0000000
Q ss_pred CCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhh--hhHHHhhhhhhhhhhhcccchhhhccccchhh
Q 017193 151 IPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVY--YGVILLTSELNSEEARCGSTLLLLEHAQDASL 228 (375)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
.. .....++++.++.+.-.+..+.+.+.-..- +.+.+.... ++.++...
T Consensus 224 -----------~~---~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~---------------~g~~~~~a 274 (422)
T COG0738 224 -----------SG---SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL---------------LGLNEQQA 274 (422)
T ss_pred -----------cc---cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---------------CCccHHHH
Confidence 00 002345666666555555445554433222 222221110 01111111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 229 YVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
.........+..+|-+++.++++|+...+.+....+++.+..+......+. +.....+....+....++..++...+..
T Consensus 275 a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-v~~~~l~~ig~F~simfPTIfslal~~l 353 (422)
T COG0738 275 AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-VALYALFLIGLFNSIMFPTIFSLALKNL 353 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 111223335557888888899999998888877666555544443333332 2233344455555667888889999999
Q ss_pred cccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHH
Q 017193 309 PTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIF 349 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (375)
| +.- ...|..-.++-+||.+.|.+.+.+.|..+....+.
T Consensus 354 ~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 354 G-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred C-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 8 333 33344455667889999999888877665444433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-08 Score=93.28 Aligned_cols=258 Identities=17% Similarity=0.166 Sum_probs=145.0
Q ss_pred HHHHHHHhhhcCCCc-hhHHHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-----C--CchHHHHHHHhH
Q 017193 19 LVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMLMVVISTFWTLGTIFEAALAWMVMP-----R--LNWRWLLALSSV 89 (375)
Q Consensus 19 l~~~R~i~G~~~G~~-~~~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-----~--~~WR~~f~~~~i 89 (375)
+.+.-++..++.... ....++..|.++ +++|.+..++-+.+..+|.++.+.+...+.+ . .+||+...+.++
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i 185 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI 185 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence 455555555555443 334577889998 5789999999999888888765554443321 1 279999988887
Q ss_pred HHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchh
Q 017193 90 PSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSS 168 (375)
Q Consensus 90 ~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (375)
..++. ++.....+|.++ +.++ ++++ .+-.+
T Consensus 186 v~~v~~~i~~~~~ke~~~------~~~~-----------------------------~~~~--------------~~~~~ 216 (428)
T PF13347_consen 186 VGLVFFLITFFFVKERSV------EVTE-----------------------------QEKK--------------ISLRD 216 (428)
T ss_pred HHHHHhhhhhheeeeccc------cccc-----------------------------cccc--------------ccccc
Confidence 77665 445556677110 0000 0000 00011
Q ss_pred hhHHhhhhhhHHHHHHHHH-HHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHH
Q 017193 169 SFLMLLSTELIRTTLLLWF-LFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSA 247 (375)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 247 (375)
.++.+++.+..+..+...+ .++++....-...++..+.. +.++. ......+..+..+++.++.+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~~~-~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNEGL-ISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCchh-hHHHHHHHHHHHHHHHHHHH
Confidence 2334444333333222222 12222211111111111111 01111 11112344566778888999
Q ss_pred HHHhhhCchHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeeccccccc-------cchhHHHH
Q 017193 248 VIVDRVGRKISMAIMSILTFIFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVYPT-------SLRATGAG 318 (375)
Q Consensus 248 ~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-------~~R~~~~g 318 (375)
++.||+|||+.+..+..+.++......... +.+...+.....+......+..++++.+|+.+. +..|.-.|
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 999999999998888777766555544332 333333333344444445567889999998873 44577777
Q ss_pred HHHHHHhHHHhHHHHHHHHhhc
Q 017193 319 IASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
+.+...+++..+++.+...+++
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 8888888888888877665543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-09 Score=97.90 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=92.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|+++||+|||+.++.+.+...+.........+........+.............+.+..|.+|.+.
T Consensus 45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 34455667788899999999999999888776655544444333332222222222222222234556788899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
|+++.++.+....+++.++|.+...+.+..+....+.+.+++.++..++.++..||++.
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999988988887665554443345566666666666665556677654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=102.78 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=93.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....++..++.++.+++.||+|||+.++.+.++..+..+.....++.....+.-+..+.......+....+..|.+|++.
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence 34556778889999999999999999888777666655544444433332222333333333344667789999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.++......++..++|.+.+.+.+..+....+++.+.+.++..++.+++.||++
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999988877666544334444444444455555555556644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-09 Score=100.92 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCch
Q 017193 177 ELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRK 256 (375)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr 256 (375)
.+++....++..++.+.+.+.......+.+..+. +.+............++..++.++.|++.||+|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 85 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF-----------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR 85 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3444444555555555555554444444433211 11111112223344566678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 257 ISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
+.+..+.++..+..+......+.+...+..+..++...+..+....+..|.+|.+.|+++.++......+++.++|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 86 LAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888776665554444433333332233333333333445566778899999999999999999999999999998887
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 337 GLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
.+.+..+ +...+..+++..+..++.....||+
T Consensus 166 ~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 166 LVVPVWG-WRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHhccCC-HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7665443 3333333333333333333334554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-07 Score=84.52 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHH----HHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH-QPVTLTTVLLFG----ARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El 307 (375)
.+..+.+++-....+.+..|+|-|++++.+.+...+=...+... ++.+........ -+......+.....|..|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 35567788999999999999999999888877666533333333 333221111111 1111112234566799999
Q ss_pred ccccchhHHHHHHHHHH-hHHHhHHHHHHHHhhcccchhH------HHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVG-RIGGMVCPLVSVGLVTGCHQTA------AIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet 369 (375)
.|++.|++++++-+.+. .+|+.++..+.+.+.+..+... .+.+.+++.++..++.+++.+|+
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999987765 5888898888888877644322 22334444444444444444444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=97.42 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|++.||+|||+.+..+.++..+..+......+.+......+.........++....+.+|.+|++.
T Consensus 65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE 144 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence 34456677889999999999999999888877766665544433333222222222222222234556678899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
|+++.++.+..+.+++.++|.+...+.+..+....+.+.+++.++..+...++.||
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999888777665443344445555444444444444444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-09 Score=94.96 Aligned_cols=136 Identities=18% Similarity=0.128 Sum_probs=93.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.+..|.+.||+|||+++..+.++..+..+......+.+......+..........+....+.+|.+|.+
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 117 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE 117 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence 34455667888999999999999999888877776665333322233333333333333333445567788999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 367 (375)
.|+++.++......++..++|.+.+.+.+..+....+++.+++.++..++...+.+
T Consensus 118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 99999999999999999999998887665444344666677666666654434443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-09 Score=98.99 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=92.8
Q ss_pred HHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhh-CchHHHHHHH
Q 017193 185 LWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRV-GRKISMAIMS 263 (375)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~-gRr~~~~~~~ 263 (375)
+........+.||+...+.+.+..+. .+.++...............++.+++|+++||+ |||+.+..+.
T Consensus 14 l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~ 83 (493)
T PRK15462 14 VVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA 83 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 33344456677887776665443211 011111112222333355567888999999998 9999988777
Q ss_pred HHHHHHHHHHhhcc-chhHHHHHHHHHHHHhhhh-cccceeecccccccc--chhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 264 ILTFIFLLPLLTHQ-PVTLTTVLLFGARMFANGT-FAVACVYAPEVYPTS--LRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~P~~--~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
++..+..+.+.... +..... ..........|. .+...++.+|+||++ .|.++.++.++.+++|++++|.+.+.+.
T Consensus 84 il~~lg~lll~~~~~~~~~~~-l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLY-LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHH-HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 66655433332211 111111 111111122232 244567889999986 7999999999999999999999998876
Q ss_pred cccchhHHHHHHH
Q 017193 340 TGCHQTAAIFLLA 352 (375)
Q Consensus 340 ~~~~~~~~~~~~~ 352 (375)
+..+....+.+.+
T Consensus 163 ~~~Gw~~~F~iaa 175 (493)
T PRK15462 163 EEYSWAMGFGLAA 175 (493)
T ss_pred hhhChHHHHHHHH
Confidence 6554434444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=96.85 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=91.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..++..++.+..|.++||+|||++++.+.++..+..+.....++.....+.-+..+.......+..+++..|.+|++.|
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33455667888899999999999998887766655555444444433322222222222212223456788899999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
+++.++.+....++..++|.+...+.+..+....+++.+++.+++.+..++..||+++
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999998887666554443345556666656665555556788753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=96.12 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 2 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN-RGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 2 ~~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~-Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
++...+++-++..+++++++.|.+||+|-+.. .+...+++..+|.+. ||+++|....+.++|.+++++.+....+.-|
T Consensus 145 vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G 224 (464)
T KOG3764|consen 145 VMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG 224 (464)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence 35677888899999999999999999998864 566788888888876 7999999999999999999999998888889
Q ss_pred hHHHHHHHhHHHHHHHHHHhc
Q 017193 80 WRWLLALSSVPSFAVLLLYGL 100 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~ 100 (375)
.+.+|++.++..++-....++
T Consensus 225 k~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 225 KSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred CcCcHHHHHHHHHHHHHHHHh
Confidence 999999999998887665544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=98.88 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=95.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.++.|.+.||+|||+.+..+.++..+.........+.+...+..+..+.+.....+....+.+|.+|++
T Consensus 35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 114 (399)
T TIGR00893 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS 114 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH
Confidence 34455677788899999999999999988777666555444433333333223333333333334556778999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
.|+++.++......+++.++|.+...+.+..+....+.+.+++.++..+..+++.||++
T Consensus 115 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 115 ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 99999999999999999999988876666554444555555555555555555555554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=96.11 Aligned_cols=136 Identities=8% Similarity=-0.012 Sum_probs=89.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
...+...++.+..+.+.||+|||+++..+.++.++..+......+.+...+.-+..........+....+.+|.+|++.|
T Consensus 52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r 131 (390)
T PRK03545 52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK 131 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 33445566777889999999999999888776666554444444433322222222222222234556788999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+++.|+......++..++|.+...+.+..+....+++.+++.++..+..+...||.
T Consensus 132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999888999999998877665544444455666666655555555555554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=96.39 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=88.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|.+.||+|||+++..+.+...+.........+.+...+.-+..+....+..+....+..|.+|++.
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 34556777889999999999999999988777666655444433333333333333333333345566778899999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.++......++.++++.+.+.+.+..+ +...+...++..+..++.....||++
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f~i~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESK 196 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence 9999999988888999898887776655443 32333333333333333323345653
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=93.40 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=82.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
...++..++.++.+++.||+|||+.+..+.++..+..+......+.+...+..+....+.....+....+.+|.+|++.|
T Consensus 50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r 129 (394)
T PRK03699 50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence 44566778899999999999999998877666555444443333333222222333322222344566788999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHH
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQT-AAIFLLAVVIVLSIVC 361 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 361 (375)
+++.+..+....+++.++|.+...+.....++ ..+.+.+++.++..++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888877665433223 3444445444444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-07 Score=89.73 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-----HQPVTLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
+.++..+++.++.+++.||+|||+.+..+..+..+..+.... ..+.+...+..+.........+...+++.+|..
T Consensus 274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i 353 (473)
T PRK10429 274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV 353 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344667788888999999999999987666544432222211 112222222222222223334566788888884
Q ss_pred c-----ccc--hhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 309 P-----TSL--RATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 309 P-----~~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
+ +.. .|...|....+.+++..+++.+.+.+++
T Consensus 354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 444 4556677777788888888887776654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=92.83 Aligned_cols=133 Identities=16% Similarity=0.061 Sum_probs=85.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc-----chhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ-----PVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.+..+...++.++.|.+.||+|||+.++.+.++..+......... +.+...+..+..........+...++.+|.
T Consensus 41 ~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 120 (365)
T TIGR00900 41 LAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL 120 (365)
T ss_pred HHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677888999999999999998877665544333322211 222222222222222223345667889999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+|++.|+++.++.+....++..++|.+...+.+..+....+++.+...+++.+..+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 121 VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999887766654443334444444444444444333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=93.03 Aligned_cols=138 Identities=14% Similarity=0.041 Sum_probs=86.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|.++||+|||+.+..+.+...+..+......+.+......+..........+....+..|.+|.+.
T Consensus 50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 44556677888999999999999999887766655544443333333222222222222211222344566789999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+.+.++.+....++..++|.+...+.+..+....+.+.++...+..+...++.||++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9999998888888888888888776655444334444544444444444445567754
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-09 Score=95.85 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=94.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|.+.||+|||+.+..+.++..+.........+.+...+..+...++.....+....+.+|.+|.+.
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE 112 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34456667888999999999999999888777666655544433333332233333333333334556678999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.++.+....+++.++|.+...+.+..+....+.+.+.+..+..+...+..||++
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999988776666444334555555555565555555666653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=94.35 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=81.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH----QPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.....+...++.++.|.++||+|||++++.+.++..+..+..... .+........+....+.....+.......|.
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~ 148 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 148 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 344556677889999999999999999888777666554443321 1222222222222222222233344567899
Q ss_pred ccccchhHHHHHHHHHHhHHHh-HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGM-VCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+|++.|+++.|+.+....+++. .+|.....+....+....+++.+++.++..+..+++.||+
T Consensus 149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999998888887764 4454322222222222344455555555555555555554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-08 Score=93.03 Aligned_cols=136 Identities=14% Similarity=-0.036 Sum_probs=85.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
...++..++.+..|++.||+|||++++.................+.....+.-+..+ ...+.....+...+|.+|++.|
T Consensus 34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G-~g~~~~~~~~~~~~~~~~~~~r 112 (368)
T TIGR00903 34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA-LGQPFLLNAFAPAASQIREERR 112 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-hHhHHHHHHHHHHHHHcCHHHH
Confidence 445566788888999999999998766544333332221111122222222222222 1122233445556899999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+++.++......+|+.+++.+.+.+.+..+....+++.+++.++..+..+++.||..
T Consensus 113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999888777665544333444556666666666676777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-08 Score=92.37 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=90.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....++..++.++.|++.||+|||+++..+..+..+..+......+.+...+.-+..+.......+....+..|.+|++.
T Consensus 45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 44567778899999999999999999988877766655544444443332222222222222223444567889999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.+.......++..++|.+...+.+..+....+.+.+.+..+..+..++..||.+
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999888888888888877665555444334555555555555555555567754
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-08 Score=94.68 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=73.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHhhhhcccceeecc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQP------VTLTTVLLFGARMFANGTFAVACVYAP 305 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (375)
.....++.+++.++.+++.||+|||+.+..+.++..+..+......+ .....+.-+..++...+..+....|.+
T Consensus 62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 141 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS 141 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34455777899999999999999999987766655554433332211 111222223333333445567889999
Q ss_pred ccccccchhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 306 EVYPTSLRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 306 El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
|.+|++.|+++.++......+|..+++.+..
T Consensus 142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 142 EFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888877776654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-08 Score=93.62 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=87.5
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccc-cccchh
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVY-PTSLRA 314 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~-P~~~R~ 314 (375)
.++...+.+..|+++||+|||+.++.+.++..+..+.....++.+...+.-++.+....+..+.......+.+ |++.|+
T Consensus 51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~ 130 (495)
T PRK14995 51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN 130 (495)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455567788999999999999998887776665554444444433222222222222223333344454554 789999
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
++.|+......++..++|.+.+.+.+..+....+++...+.++..++.+++.||.++
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998877766543344445444555555555556666543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=84.53 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHhhhcC-CCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchHHHHHHHhHHHHHHH
Q 017193 37 LSWFLEFIP-ASNRGMLMVVISTFWTLGTIFEAALAWMVMP-------RLNWRWLLALSSVPSFAVL 95 (375)
Q Consensus 37 ~~~~~E~~p-~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~WR~~f~~~~i~~ll~~ 95 (375)
.++..|.++ +|+|.+++++-+.+..+|..+++.+...+.. ..+|+....+.++++++..
T Consensus 131 ~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 131 CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 356678888 8899999999999888888777655433211 2468888777776665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=94.43 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=85.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH----QPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..++..++.++.|++.||+|||+.+..+.++.++..+..... .+.....+..+....+....++....+..|.
T Consensus 67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~ 146 (438)
T TIGR00712 67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW 146 (438)
T ss_pred HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence 344556677889999999999999998877766655544433221 1111111112222222222234455677899
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGC-HQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+|++.|+++.|+.+....+++.++|.+.....+.. +....+++.+++.++..+..+++.||+
T Consensus 147 ~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 147 WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999998998888887665444332 223345555666666555555655654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-09 Score=97.51 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=89.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.++.|+++||+|||+.+..+.++..+..+......+.+...+..+....+.....+....+.+|.+|++
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 115 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS 115 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence 34455677788899999999999999988887766665554443333333222223333333334566778999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHH-HHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPL-VSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
.|+++.++.+....+++.++|. +...+.+..+....+++.+++.++..+..+++.||+
T Consensus 116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 9999999999999999999884 443333333333344555555555555555555554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-08 Score=90.72 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=85.7
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
.+......++.|.++||+|||+++..+.....+..+......+.+......+..........+...++..|.+|++.|++
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34445557888999999999999988777766655554443333322222222222221223445677889999999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+.|+.+....++..++|.+.+.+. ..+....+.+.++..++..+...++.||.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999887766 33333444444444444444444445553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-08 Score=90.42 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=72.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ-PVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
.+..+...++.++.|+++||+|||+.+..+.++..+..+...... +.+...+.-+..... .+.......+.+|.+|++
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKK 122 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHh
Confidence 344566788899999999999999998887777666555444333 332222222222222 233344567888999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
.|+++.++......++..+++.+.+.+.
T Consensus 123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 123 IQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999998888887777776665444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=89.90 Aligned_cols=135 Identities=21% Similarity=0.155 Sum_probs=87.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+...++.++.|.+.||+|||+.+..+.+...+.........+.+...+..+.... ..+..+....+..|.+|++.|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 140 (408)
T PRK09874 62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL-LGGFVPNANALIATQVPRNKS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHhHHHHHHHhcCHhhh
Confidence 3345566778889999999999999887766555544433333332222222222222 123334445677899999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+++.++.+....++..++|.+...+.+..+....+++.+++.++..+..+++.||.
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999988899999998887666554444455666666666655555555554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-08 Score=92.65 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=98.2
Q ss_pred HHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh-hCchHHHHHH
Q 017193 184 LLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR-VGRKISMAIM 262 (375)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~-~gRr~~~~~~ 262 (375)
.++...+.+.+.||+...+.+.+..+... .+.+............+...++.+++|++.|| +|||+++..+
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~--------lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQAG--------LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 34444556777788776655544221000 01111112222334456667889999999999 8999999888
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc---hhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 263 SILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL---RATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~---R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
.++..+..+.+....+...................+....+.+|.+|++. |+++.++.+...++|+.++|.+.+.+.
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 77766655444433322222111112222111223455678889998764 899999999999999999999988776
Q ss_pred cccchhHHHHHHHHHHHHH
Q 017193 340 TGCHQTAAIFLLAVVIVLS 358 (375)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ 358 (375)
+..+....+.+.++..+++
T Consensus 166 ~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HhcChHHHHHHHHHHHHHH
Confidence 6544333444434333333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-07 Score=86.67 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=85.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH-----QPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.+..+...++.+..|.+.||+|.|+++..+.+...+..+..... .+.....++-+..++. .+.++......++.
T Consensus 77 ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~w 155 (462)
T PRK15034 77 ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFF 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 34445555666778999999999998877776665544444332 2222222222233222 34556667788999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhh-----cc-------------cchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLV-----TG-------------CHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
||++.|+++.|+....+++|..+.+.+.|.+. .. .+.....+++..+.++.+++.+++.+|.
T Consensus 156 fp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 156 FPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred CCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999998888888877766665433 11 1122344566666666666666665543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=88.73 Aligned_cols=130 Identities=23% Similarity=0.207 Sum_probs=87.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.++.|.+.||+|||+.+..+.+...+.........+.+......+..........+....+.+|.+|++
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 119 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence 34455667788999999999999999888877776665555443333332222222222222233456678899999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVC 361 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (375)
.|++..++.+....+++.++|.+...+.+..+....+.+.+.+.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877665443333444444444444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=89.37 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=84.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....+...+...+.|.+.||+|||++++.+.++..+..+......+. ...-+..+.......+...++.+|++|++.
T Consensus 45 ~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~ 121 (393)
T PRK11195 45 MFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK 121 (393)
T ss_pred HHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34445667788899999999999999888776654433332222111 112222333333445677889999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+++.|+......++..++|.+.+.+.+.. ....+.+.+.+.+++ .+..+..||.+
T Consensus 122 ~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 122 LVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 999999999998999999999887666532 222222222222223 33345566654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=87.08 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=86.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.++.|.++||+|||+.+..+..+..+..+......+.+...+..+...............+..|.+|.+.
T Consensus 48 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 48 SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred HHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 34456667889999999999999999887766655544443333333222222222222111222334467789999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
|+...+..+....+++.++|.+...+.+..+....+.+.+.+.++..+..++++||
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 128 ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999998888888888999888776665544445555555555555555555444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=90.62 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhh-hCchHH
Q 017193 180 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDR-VGRKIS 258 (375)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~-~gRr~~ 258 (375)
|..+.+....+...+.||+...+.+.+..+. + +.++.+.................++|++.|| +|||++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~---------l-g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~ 83 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ---------L-GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT 83 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------c-CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH
Confidence 3334444455567788887765544332211 0 1111111111111122233445689999999 999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhh-hcccceeeccccccccc--hhHHHHHHHHHHhHHHhHHHHHH
Q 017193 259 MAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANG-TFAVACVYAPEVYPTSL--RATGAGIASAVGRIGGMVCPLVS 335 (375)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~El~P~~~--R~~~~g~~~~~~~~~~~~~~~~~ 335 (375)
++.+.++..+..+......+................+ ..+....+.+|.||++. |+.+.++.+...++|+.++|.+.
T Consensus 84 ~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 84 IVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 9888777666544443322211111111112122222 33456688999999874 57889999999999999999888
Q ss_pred HHhhcccchhHHH
Q 017193 336 VGLVTGCHQTAAI 348 (375)
Q Consensus 336 ~~~~~~~~~~~~~ 348 (375)
+.+.+..+....+
T Consensus 164 g~l~~~~gw~~~F 176 (489)
T PRK10207 164 PVIADKFGYSVTY 176 (489)
T ss_pred HHHHHhhChHHHH
Confidence 8776665433333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-06 Score=80.39 Aligned_cols=138 Identities=11% Similarity=0.073 Sum_probs=90.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+.+++...++.++.+|+|-|+.++.+..+..+=........+.+.....-..-..-.........-|.++.+|++..
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rls 346 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHH
Confidence 44567788999999999999999998887666655333333333333222211111111111223355799999999999
Q ss_pred hHHHHHHH-HHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 314 ATGAGIAS-AVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 314 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
++...+.. ....++.++.+...+.+.|..|...++++.+++.+...++..+..++.|+
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999975 44578888888888999998876678888888877777777766655444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-08 Score=89.81 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..++..++.+..|.+.||+|||+++..+.++..+..+......+.+...+..+.........+.....+..|.+| +
T Consensus 44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 122 (377)
T TIGR00890 44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D 122 (377)
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence 345556677889999999999999999888776666555444333333322222222222222222334455677787 4
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
.|+++.++......++..+++.+...+.+..+....+.+.+++.++..+..+++.
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 6999999988888888776655555554443333445555555555555544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=90.28 Aligned_cols=137 Identities=21% Similarity=0.151 Sum_probs=85.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-cc--chhHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-HQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
..+..++..++.++.|.+.||+|||++++.+.++..+....... .. +.+...+.-+..+.......+....+.+|.+
T Consensus 77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (481)
T TIGR00879 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA 156 (481)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence 34455667789999999999999999988776665554433322 11 1112222222333333334456778999999
Q ss_pred cccchhHHHHHHHHHHhHHHhHHHHHH---HHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 309 PTSLRATGAGIASAVGRIGGMVCPLVS---VGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
|++.|+++.++.+....+|+.+++.+. .......+....+.+ .++..+..+...++.||+
T Consensus 157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~-~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL-QLIPAGLLFLGLFFLPES 219 (481)
T ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999998876 322222222223333 333344444444556775
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-07 Score=86.73 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=64.2
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchh--------HHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVT--------LTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
++..+|.++.|++.||+|||+.+..+.+...+..+......+.. ...++=+..+....+.++....+.+|.+
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 153 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVA 153 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC
Confidence 34458999999999999999999888777666555443322211 1111112222222334567778999999
Q ss_pred cccchhHHHHHHHHHHhHHHhHHHHH
Q 017193 309 PTSLRATGAGIASAVGRIGGMVCPLV 334 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~~~~~~~~~ 334 (375)
|++.|+...++.......|..+++.+
T Consensus 154 p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 154 VEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888766555555555544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.6e-08 Score=93.67 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=99.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++..+|+++.|.++||+|||++++.+.++..++.+......+.....++=++.+++..+.....+.+.+|+++++.
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~ 204 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ 204 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch
Confidence 34456678899999999999999999999988888877666666666655556666677777788889999999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAI-FLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+.+..+ ....+.++.+.+....++.. .|... ++......+. ++.++++||.+
T Consensus 205 R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~-~~~~~l~~Es~ 258 (521)
T KOG0255|consen 205 RGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLF-LLLWFLPPESP 258 (521)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHH-HHHHHccCcCh
Confidence 9999999 88888888888888776655 22222 2223333323 23366677865
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=92.53 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=87.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++.+++.++.|.++||+|||++++.+.++..+..+......+.+...+.-++.++...+..+....+.+|.+|.+.
T Consensus 134 s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred HHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 44556778899999999999999999988877766655554444443333333333334434446778899999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
|+.+.++......+|.+++|.+...+ .. + ...+++.++..++..+.. ++.||+
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~-~~-w-r~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFI-PD-W-RWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-hH-H-HHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 99999998777777777777665432 22 2 223444444444444444 556775
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=86.91 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhH--------HHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 240 LPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTL--------TTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 240 i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
.++.++.|++.||+|||+.++.+.+...+.........+... ..+.-+..+.......+....+.+|.+|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 467889999999999999998887766655554443332221 011111111111222344567899999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
.|+++.++.....+++..+++.+..
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887776666655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-07 Score=84.01 Aligned_cols=109 Identities=16% Similarity=-0.022 Sum_probs=72.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
.....++..++.++.+.+.||+|||+.+..+.+...+........++.+...+..+..+.......+.......|..|.+
T Consensus 47 ~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 126 (381)
T PRK03633 47 SSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR 126 (381)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34455677788999999999999999988877666655444433333333222222222222222233334556788889
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
.|+++.+..+....+|..++|.+...+.+
T Consensus 127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 127 NRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999988775544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-08 Score=76.22 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 017193 4 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRW 82 (375)
Q Consensus 4 ~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~ 82 (375)
.++.++..+.++++.+.+.+++.|++.+.. +....++.|..|+++|++..+..+....+|..+++.+...+.+..+||+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 118 (141)
T TIGR00880 39 VLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118 (141)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHH
Confidence 344555666789999999999999998874 5667889999999999999999999999999999998888777889999
Q ss_pred HHHHHhHHHHHHH-HHHhcCcCC
Q 017193 83 LLALSSVPSFAVL-LLYGLAPET 104 (375)
Q Consensus 83 ~f~~~~i~~ll~~-~~~~~~pES 104 (375)
.+.+.+...++.. ......||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 119 PFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Confidence 9998877666553 444456664
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=79.59 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH-Hhhcc-chhHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP-LLTHQ-PVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
+.+...+.|.++||.||+.....+..+..+..=. +.+.+ +++... ..... ...-.....|-..+-+.|.+.-+++
T Consensus 313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m-~~lGL--sysllAcslWP~va~~vpE~qLGTa 389 (459)
T KOG4686|consen 313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSM-TFLGL--SYSLLACSLWPCVASLVPEEQLGTA 389 (459)
T ss_pred hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHH-HHHhh--hHHHHHHHHhhhhhhhCCHHHhcch
Confidence 4566778899999999998776544333221111 11111 122111 11111 1111113356777888999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccch
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQ 344 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (375)
.|.+..+.+++-.+.|.+.+.+.++.|+
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGS 417 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence 9999999999999999998877776553
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=85.79 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=103.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccc
Q 017193 227 SLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 306 (375)
++........++.-++-++.|.++||.+.|..+..+.+.++++.+.+....+.....++.+.-..+-...++.+......
T Consensus 65 ~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~ 144 (448)
T COG2271 65 QLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITH 144 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34444455567778899999999999999999999999998888877765544433333333344433345778888899
Q ss_pred cccccchhHHHHHHHHHHhHHHhHHHHHH--HHhhcccchhHHHHHHHHHHHHHHHHHHhccc
Q 017193 307 VYPTSLRATGAGIASAVGRIGGMVCPLVS--VGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 307 l~P~~~R~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 367 (375)
-||.+.||+-.++-+..+++||.+.|.+. ..+....+....+++-+++.++.+++.++..+
T Consensus 145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998887 55544444344556666666777777776643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-07 Score=86.25 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=81.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---h--ccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---T--HQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
....+..+++.++.|.++||+|||+.+..+..+.++...... . ..+.+...+..+..........+....+.+|.
T Consensus 59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 138 (417)
T PRK10489 59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPAL 138 (417)
T ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344566678889999999999999987765554443322211 1 11222222222222222222234456788999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+|++.|+++.++......++..++|.+...+.+..+....+.+.++..+++.+.. +..||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 9999999999999988899999999888766654333334444344444443333 344554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-07 Score=87.01 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=82.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc---------cchh--HHH-HHHHHHHHHhhhhcccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH---------QPVT--LTT-VLLFGARMFANGTFAVA 300 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~-~~~~~~~~~~~~~~~~~ 300 (375)
.+..++..++.++.|++.||+|||++++.+.++..+..+..... .+.. ... +.-+..++...+..+..
T Consensus 62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (479)
T PRK10077 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS 141 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence 44456778899999999999999999887766554433322210 1111 111 11122233333445667
Q ss_pred eeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 301 CVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV--------TGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 301 ~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
.++.+|.+|++.|+++.++......+|..+++.+...+. +..+....+++.++..++. +...++.||+.
T Consensus 142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~~s~ 218 (479)
T PRK10077 142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYFVPETP 218 (479)
T ss_pred HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHcCCCCc
Confidence 889999999999999999988777777777765433221 1122223344444444443 33445567864
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-07 Score=84.55 Aligned_cols=113 Identities=12% Similarity=-0.046 Sum_probs=70.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hccchhHHHH-HHHHHHHHhhhhcccceeeccc
Q 017193 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---THQPVTLTTV-LLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E 306 (375)
......++..++.++.|.+.||+|||+.+..+..+..+...... ...+...... ..+..+............+..|
T Consensus 53 ~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~ 132 (402)
T TIGR00897 53 AFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVY 132 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHH
Confidence 34455677788999999999999999998877766555433221 1112222111 1111111111122233456778
Q ss_pred cccccchhHHHHHHHHHHhHHH-hHHHHHHHHhhcccc
Q 017193 307 VYPTSLRATGAGIASAVGRIGG-MVCPLVSVGLVTGCH 343 (375)
Q Consensus 307 l~P~~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (375)
.+|++.|+++.|+.+....++. ..+|.+...+.+..+
T Consensus 133 ~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 133 NTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8999999999999999888875 567776655554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=90.63 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=81.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT-----HQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
....+...++.+..|++.||+|||+++..+.++.++....... ..+.....+.-+..+.+....++....+.+|.
T Consensus 71 s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 150 (467)
T PRK09556 71 LGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRW 150 (467)
T ss_pred HHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445666788899999999999999987776655544333221 12222222222222222223345566789999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGC---HQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+|++.|+++.|+....+.+|+.+++.+........ +....+.+.+.+.++.++..+++
T Consensus 151 ~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 151 TPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred cCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888888877665443321 11123334454444444444444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8e-06 Score=78.25 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=65.6
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeeccccccc----
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVYPT---- 310 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~---- 310 (375)
+..+++..+.+.+.||+|+|+.+..+.+++.+..+.+.... +.+......+..........+..++..+|..|.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 44566788889999999999998877665554333332221 222211112222222223345567777777764
Q ss_pred ---cchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 311 ---SLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 311 ---~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
+.++...|+.+...++++.+++.+...+++
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999888887765543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=82.98 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=66.2
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhH--------HHHHHHHHHHHhhhhcccceeeccccc
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTL--------TTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
+...+|.++.|++.||+|||+.+..+.++..+..+......+... ....-+..++...+.++....+.+|.+
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 445678889999999999999998887777666555444333210 111112222222333455567999999
Q ss_pred cccchhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 309 PTSLRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
|++.|++..+.......+|..+++.+..
T Consensus 155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~ 182 (438)
T PRK09952 155 PKNKKAFYSSGVQVGYGVGLLLSTGLVS 182 (438)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887776777766655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=85.21 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=86.4
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---h-c-cchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---T-H-QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
.+..++-++.+|.+.||+.||++++.+.++..+....+. . . .+.+...++.+....+.....+...++.+|+.|.
T Consensus 55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~ 134 (524)
T PF05977_consen 55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK 134 (524)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 344455677899999999999999887766544322221 1 1 1233333344444443333446677899999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+....++++.....++...++|.+.+.++...+....+.+-+...+++.+.....+++.
T Consensus 135 ~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~ 193 (524)
T PF05977_consen 135 EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP 193 (524)
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999998887776655544444444444444444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=89.70 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=89.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH--QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
...++.+++.+.+|++.||+|||+.+..+.++..+..+..... .+.....+.-+..+......++....+.+|.+|++
T Consensus 84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~ 163 (465)
T TIGR00894 84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK 163 (465)
T ss_pred HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence 3346677888999999999999999888776665544433211 11222222222222333334556778899999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGC-HQTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
.|+++.|+......++..++|.+...+.+.. +....+.+.+++.++..+..+.++||
T Consensus 164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999887776552 33345555555555555555554444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.8e-07 Score=83.43 Aligned_cols=111 Identities=10% Similarity=-0.155 Sum_probs=69.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hccch-----hHHHHHHHHHHHHhhhhcccceeec
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---THQPV-----TLTTVLLFGARMFANGTFAVACVYA 304 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (375)
.+..+...++.++.|.++||+|||+++..+.+...+...... ...+. ......-+..+.......+....+.
T Consensus 58 ~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (399)
T PRK05122 58 SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWG 137 (399)
T ss_pred HHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHH
Confidence 344566677888899999999999999887765544322211 11111 1111111122222222234445667
Q ss_pred cccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 305 PEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 305 ~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
.|.+|.+.|+++.++......++..++|.+...+.+..+
T Consensus 138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 899999999999998877777777788887766655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-07 Score=85.70 Aligned_cols=129 Identities=13% Similarity=0.060 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhh-cccceeeccccccccchhH
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGT-FAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~P~~~R~~ 315 (375)
+....+..+.|+++||+|||+.++.+.++..+..+......+.+..............+. ......+..|.+| +.|++
T Consensus 65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~ 143 (455)
T TIGR00892 65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL 143 (455)
T ss_pred HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence 344567778999999999999988776655554444333322222111111111111121 2344466778887 68999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
+.|+.+....+++.++|.+.+.+.+..+....+++.+++.+++.+..+++.
T Consensus 144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999988877776655444556666665555544444443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=81.34 Aligned_cols=137 Identities=18% Similarity=0.099 Sum_probs=79.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAI-MSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
+..+...+...+.|.+.||+|||+.++. +.....+.........+.+...+..+..........+....+..|..|++.
T Consensus 41 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~ 120 (375)
T TIGR00899 41 GSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG 120 (375)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence 3344556677788999999998876544 333333333333333333222222222222222233444566778888887
Q ss_pred hhHH--HHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATG--AGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|+.+ .+.....+.++..++|.+...+.+..+....+++.+.+.++..+..+++.||.+
T Consensus 121 ~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 121 REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7755 566666777888888888776665544445566666666666666666566643
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=84.20 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=67.8
Q ss_pred HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhh-hcccceeeccccccccc--hhHHHH
Q 017193 243 LLLSAVIVDR-VGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANG-TFAVACVYAPEVYPTSL--RATGAG 318 (375)
Q Consensus 243 ~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~El~P~~~--R~~~~g 318 (375)
..++|++.|| +|||+.+..+.++..+.........+......+.........+ ..+....+.+|.||.+. |..+.+
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 4578999999 5999998887766655443333322221111111111112222 23455578899998653 456788
Q ss_pred HHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHH
Q 017193 319 IASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLA 352 (375)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (375)
+.+...++|+.++|.+.+.+.+..+....+.+.+
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 8889999999999999887776554333443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-06 Score=80.41 Aligned_cols=109 Identities=16% Similarity=-0.037 Sum_probs=75.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++...+.+..+.+.||+|||+++..+..+..+..+.....++.......-+..++......+....+..|.+| +.
T Consensus 51 s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~ 129 (393)
T PRK09705 51 ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR 129 (393)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence 34445667788999999999999999999888887776665554443332222222222222233444567788888 67
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGC 342 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 342 (375)
|+++.|........++.+++.+.+.+.+..
T Consensus 130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 130 TPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888888888888877666543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-06 Score=79.84 Aligned_cols=107 Identities=15% Similarity=0.035 Sum_probs=73.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
....++..++.+..+++.||+|||+.+..+.++.++....... ..+.+......+..+.......+....+..|+.|
T Consensus 45 s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~ 124 (410)
T TIGR00885 45 SAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGP 124 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence 4445667788899999999999999998887766554443322 1222222222233322222233444567788899
Q ss_pred ccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 310 TSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 310 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
++.|++..++.+....+|+.++|.+...+.
T Consensus 125 ~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 125 ESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-06 Score=77.99 Aligned_cols=133 Identities=23% Similarity=0.190 Sum_probs=90.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc--cchh-HHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH--QPVT-LTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
..+..+...+--+.-+++.||+|.|+....+.++..+-.+..... .+.. ....+-... ....+.+.....++++-|
T Consensus 55 ~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~-G~~GasFav~m~~~s~~f 133 (417)
T COG2223 55 VAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLL-GLAGASFAVGMPNASFFF 133 (417)
T ss_pred HHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH-hcccceehcccccccccC
Confidence 334445555566678999999999988877776655533333322 2221 212222111 233456778888999999
Q ss_pred cccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHhcc
Q 017193 309 PTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH---QTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 309 P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
|++.++++.|+.. .||+|..+...+.|.+....+ ......++....++..+..++..
T Consensus 134 P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 134 PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999888887776655 34556677777777777766664
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=92.31 Aligned_cols=108 Identities=11% Similarity=0.004 Sum_probs=73.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---THQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
+..+..+++.+++|+++||+|||++++.+.++..+..+... ...+.+...+..++.++......+...++.+|++|.
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 34455667888899999999999998877654433322211 122222222222333333333445667899999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
+.|+++.|+......++..+++.+.+.+...
T Consensus 135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998887766543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0001 Score=70.86 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcCCCc-hhHHHHHhhhcCCC--chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHH
Q 017193 19 LVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFA 93 (375)
Q Consensus 19 l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll 93 (375)
+.++-.+.++|.|.. +...++++|..|++ +|....++.....++|..+++.+...+.+..|||+.|.++++..++
T Consensus 103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 344444444555654 55567899999986 7888889988899999999999988888888999999987654433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-06 Score=79.50 Aligned_cols=111 Identities=12% Similarity=-0.112 Sum_probs=68.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hc-----cchhHHHHHHHHHHHHhhhhcccceeec
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---TH-----QPVTLTTVLLFGARMFANGTFAVACVYA 304 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (375)
....+...++.+..|.++||+|||+.++.+.+.+.+..+... .. .+.....+.-+..+.......+....+.
T Consensus 58 s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (392)
T PRK12382 58 GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWG 137 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788899999999999998877665544322111 11 1111111111222222112223344677
Q ss_pred cccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 305 PEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 305 ~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
.|.+|++.|+++.++.......+..++|.+.+.+.+..+
T Consensus 138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999887777888888888766555433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-05 Score=71.50 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=69.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeeccccc-
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVY- 308 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~- 308 (375)
......+.+.+.++...+.+|+|||+++..+.++..+....+.... +.....+...+........++++|+..+|+.
T Consensus 278 ~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD 357 (467)
T COG2211 278 LLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD 357 (467)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhh
Confidence 3444555567788899999999999999888776666555444332 2222222223333344456678899888764
Q ss_pred ----cc--cchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 309 ----PT--SLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 309 ----P~--~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
-| |.-|...|....+..++..++..+.+.+++
T Consensus 358 yge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 358 YGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 344555666677778888888777665554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.9e-06 Score=81.28 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhhh-----CchHH-HHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 241 PGLLLSAVIVDRV-----GRKIS-MAIMSILTFIFLLPLLTHQ---PVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 241 ~g~~~~~~l~d~~-----gRr~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
...++.+.++||+ |||+. +..+.+...++...+.... +.+......+...++.........++.+|.+|.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5778899999999 99886 4455554444433333222 2222222222333333334455678999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTG-CHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
.|+++.++.....+++..+++.+...+.+. .+....+++.+++.++..+..+ +.||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 999999999999999988888877766652 3333445555555555544433 356653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-06 Score=91.17 Aligned_cols=136 Identities=12% Similarity=-0.012 Sum_probs=84.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSI---LTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
+..+..++...++|.++||+|||+++..... ..+...+......+.+...+..++.........+...++..|++|.
T Consensus 60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~ 139 (1140)
T PRK06814 60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK 139 (1140)
T ss_pred HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc
Confidence 3345556778889999999999997533211 1111111111122333333333343333344557788899999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+.|++++|+..+...++..++|.+.+.+....+ +...++..++..+.++..++..||++
T Consensus 140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 140 DELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999887766543 33333443343344444444455543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.5e-06 Score=75.33 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=89.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++..++..+...+.||+.||++++....+..+..+......+.....+.=+........-++....+.+++.|++.
T Consensus 55 s~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~ 134 (394)
T COG2814 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK 134 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34456667888999999999999999887666555444333333332222111112222222334667789999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 367 (375)
|+++.++.+.-.-+...++..+...+=+..|.-.+|++.+.+.+++.+..+...|
T Consensus 135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888777776666655443333334345677778888888888887777
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-06 Score=80.84 Aligned_cols=137 Identities=15% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 235 TSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ---PVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 235 ~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..++.++|.++++++.||+|||..+....+......+...... .......--++.+............|..|+.|++
T Consensus 69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~ 148 (485)
T KOG0569|consen 69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN 148 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence 3467788999999999999999888776665555444433221 1111111112222222223345667899999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHH-HHhhcccchhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVS-VGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
.||....+......+|-.++..+. +.++.....|...+.+.++..+..++.+.+.||+-+
T Consensus 149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999998877777777666664433 444433323333333444444444555666788753
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-05 Score=76.09 Aligned_cols=109 Identities=12% Similarity=0.012 Sum_probs=71.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHhhhhcccceeeccc
Q 017193 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---THQPVTLTTVLLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 306 (375)
.......++..++.+..+.+.||+|||+++..+..+..+..+... ...+.....+..+..+............+..|
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~ 144 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455677788899999999999999999887776665544321 22233322222233333222333445556678
Q ss_pred cccccchhHHHHHHHHHHhHHHhHHHHHHHHh
Q 017193 307 VYPTSLRATGAGIASAVGRIGGMVCPLVSVGL 338 (375)
Q Consensus 307 l~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (375)
..|.+.|....++.+....+|..++|.+...+
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87788777788888888888888888775543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=81.69 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=74.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
..++...+++...|.++||.|||++++.+.+...+.........+- .+.+..=+......|.-++..++.+|+++.+.|
T Consensus 76 sF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r 154 (451)
T KOG2615|consen 76 SFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYR 154 (451)
T ss_pred HHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccCchHHHHHHHHhhcChhhc
Confidence 3356677888889999999999999998877766644433322211 111111011122345557788999999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
+.+++.......+|-+++|.+.+++-.
T Consensus 155 ~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 155 PLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999988765543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.8e-06 Score=75.27 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=84.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHh-h--cc-chhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGR-KISMAIMSILTFIFLLPLL-T--HQ-PVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gR-r~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
.+..+.+.++++++|.+.||.+. |.+.++.........+.+. . .. ...+........+++..+..++..-...|.
T Consensus 308 ~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~ 387 (480)
T KOG2563|consen 308 ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVET 387 (480)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence 34456678899999999999765 3344443333333312111 1 11 112222223333455556667788888888
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc----hhHHHHHHHHHHHHHHHHHHhccccccC
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH----QTAAIFLLAVVIVLSIVCILLFPFETKG 371 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~pet~~ 371 (375)
.=+..-++..|+.+..+++.+++-.++-....+..+ .+...++....+.+..+.+.++.|+-+.
T Consensus 388 TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 388 TYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred ccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 555556777899999999988887776665554443 3334456666667777788888776553
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=82.08 Aligned_cols=137 Identities=21% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
.....++...+.++++.++|++|||+.++.+.+...+..+......+.....+.=++.++...+...+...|.+|+.|++
T Consensus 95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~ 174 (513)
T KOG0254|consen 95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH 174 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence 34556777899999999999999999998887777666555555444433222223333333344467789999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhccc-chhHH-HHHHHHHHHHHHHHHHhcccccc
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGC-HQTAA-IFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
.|+.-.+.....-.+|..++ ++........ ..|.. +.+..+.+++..+. .++.||+-
T Consensus 175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 99999998877777555554 4444443332 12332 23333334444444 66677763
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=79.35 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchh----H----HHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVT----L----TTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
..++.++.|++.||+|||+.+..+.++..+.........+.. . ....-+..+.......+....+.+|.+|.
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 127 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP 127 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence 356788999999999999999887776665544443322211 0 11111111222222334566789999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHH
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVG 337 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~ 337 (375)
+.|+...++......+|..+++.+...
T Consensus 128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 128 GKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888776543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-06 Score=80.02 Aligned_cols=104 Identities=21% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
...+....+..+.|.++|.+|||..++.+.++..+..+.....++......-..+.+ ...|.........+|+.|.+.|
T Consensus 86 ~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G-vgaG~~~~~~~~isEl~p~k~R 164 (599)
T PF06609_consen 86 AWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG-VGAGVQELAALAISELVPNKWR 164 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcccchh
Confidence 344566677788999999999999999988877776665554443322111111111 1223333455568999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHh
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGL 338 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (375)
..+.++.....-.....+|.+...+
T Consensus 165 ~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 165 GLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred hhHhHHHHHHHHhhhcccHHHHHHh
Confidence 9888776655444444566655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=77.80 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH------QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
..+.+|++.||+|||++++++.+...+..+..... .+.+...+..+..+......++.......+.|| +.|++
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 44568999999999999988877666544443322 122211111112222211122334456778898 67999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+.|+......+|+.+.+.+...++... ....+++.+++.++.++..+.+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~~-~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSDN-TSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999876554444444322 2234444555554444444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.2e-06 Score=76.38 Aligned_cols=128 Identities=21% Similarity=0.227 Sum_probs=76.2
Q ss_pred HHHHHHHHhhh-----CchHHH-HHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 243 LLLSAVIVDRV-----GRKISM-AIMSILTFIFLLPLLTHQP---VTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 243 ~~~~~~l~d~~-----gRr~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
.++.|.++||+ |||+.+ +.+.+...+.........+ .+......+....+.........++.+|.+|++.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 67889999997 888864 4445544444333333221 11111222222222222334556789999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccc--------hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCH--------QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+.+.++......+|..+++.+...+....+ ....+++.+++.++..+..++..||.+
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888888888887765554433 223444555544444444444456653
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=74.27 Aligned_cols=107 Identities=14% Similarity=-0.035 Sum_probs=68.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..+...++.+..+++.||+|||+.+..+.+...+..... ...+.....+..+...+......+....+..|.+| +.
T Consensus 42 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~ 119 (355)
T TIGR00896 42 ALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR 119 (355)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch
Confidence 44456677888999999999999999887766554433332 22222222222222222222223344456788887 57
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
|+++.++.+....++..+++.+.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 120 VGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888888877666543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-05 Score=73.66 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhh-----CchH-HHHHHHHHHHHHHHHHhhcc--c-hhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 240 LPGLLLSAVIVDRV-----GRKI-SMAIMSILTFIFLLPLLTHQ--P-VTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 240 i~g~~~~~~l~d~~-----gRr~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
....++.+.++||+ |||+ .+..+.+...++...+.... . .+......++...+.....+...++.+|.+|+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 35667889999999 7775 56665555544444433321 1 22222222222222233345667889999999
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGC-HQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+.|+++.++......++..+++.+...+.+.. +....+++.+++.++..+. .+..||++
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 99999999998877888888877766555532 3333444445554444333 34455653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=74.53 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=70.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--ccchhH-HHHH-HHHHHHHhhhhcccceeecccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--HQPVTL-TTVL-LFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..+...++..+.|++.||+|||+.++.+..+..+....... ..+... .... .+.........+........+.
T Consensus 52 ~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (420)
T PRK09528 52 FSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAY 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhH
Confidence 34556677788899999999999999887654443322221111 000000 0000 1111111111111111112222
Q ss_pred cc--ccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 308 YP--TSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 308 ~P--~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
.+ .+.|+...|.....+.++..++|.+.+.+.+. +....++..++..+++.+..++..||
T Consensus 132 ~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 132 IERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhccccc
Confidence 22 23456677788888889999999887766553 33345555555555555555555444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-05 Score=74.07 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=78.9
Q ss_pred HHHHHhhhhhHHHHHHHHHh----hhCchHHHHHH-HHHHHHHHHHHhhccc-------------hhH---HHHH-HHHH
Q 017193 232 VFITSLAELPGLLLSAVIVD----RVGRKISMAIM-SILTFIFLLPLLTHQP-------------VTL---TTVL-LFGA 289 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d----~~gRr~~~~~~-~~~~~~~~~~~~~~~~-------------~~~---~~~~-~~~~ 289 (375)
..+..+..++...+.|+++| |+|||+.++.. .+...+....+....+ ... ..+. ....
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 34555666778888999999 59999987664 3333333333322111 011 1111 1112
Q ss_pred HHHhhhhcccceeeccccccccch--hHHHHHHHHHHhHHHhHHHHHHHHh--hc--------cc-----chhHHHHHHH
Q 017193 290 RMFANGTFAVACVYAPEVYPTSLR--ATGAGIASAVGRIGGMVCPLVSVGL--VT--------GC-----HQTAAIFLLA 352 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~El~P~~~R--~~~~g~~~~~~~~~~~~~~~~~~~~--~~--------~~-----~~~~~~~~~~ 352 (375)
.+..+...+..-++.+|+.|++.| +.+.++......+|+.+++.+.... .+ .. +....+++-+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 223333445667899999999876 4688888888888887777654321 00 00 1122344444
Q ss_pred HHHHHHHHHHHhcccccc
Q 017193 353 VVIVLSIVCILLFPFETK 370 (375)
Q Consensus 353 ~~~~~~~~~~~~~~pet~ 370 (375)
++.+++.+...+..+|..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 555566667767777753
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-05 Score=72.14 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=74.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+......+.-+.+|++.||+|-|+++..+.+.-.++........+.....++=+..+.+-...+ ..+.+..+.+|.+.|
T Consensus 70 ~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER 148 (511)
T TIGR00806 70 VLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRY 148 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHH
Confidence 3345667788899999999999999888777666655555443332222222222222222233 677899999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHh
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGL 338 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (375)
+++.|+.+....+|.++++.+.+.+
T Consensus 149 ~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 149 QRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888763
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.9e-05 Score=70.48 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=70.9
Q ss_pred hhhhHHHHHHHHHhhhCchHHHH-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchh--
Q 017193 238 AELPGLLLSAVIVDRVGRKISMA-IMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRA-- 314 (375)
Q Consensus 238 ~~i~g~~~~~~l~d~~gRr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~-- 314 (375)
..+.+.+.+++ .||.|||+.++ .+.+...+.........+.+.................+....+..|..|.+-|.
T Consensus 64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (393)
T PRK15011 64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV 142 (393)
T ss_pred HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence 44556666777 99999998754 433333232222222222222111111111111222334445566666665553
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
...++.+....++..++|.+...+.+..+....+...+...++.++..+++.||.+
T Consensus 143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 23467777788899999988877665544444555555555556566566566654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=76.06 Aligned_cols=135 Identities=21% Similarity=0.172 Sum_probs=100.9
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc-hh
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL-RA 314 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~-R~ 314 (375)
.+.++..+.+.|.++||+|+|..++++.++.....+.+.+..+.+...+.=..-+.......+...++.++.||.+. |+
T Consensus 116 A~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~ 195 (464)
T KOG3764|consen 116 ALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG 195 (464)
T ss_pred HHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence 45667777889999999999999999988887776666655444321111111122223344556788999999977 69
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+++|+.-..-.+|-.++|.+-+.+++..|...++.+.++++++.+...++..+.++
T Consensus 196 ~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 196 SVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99999999999999999998888888888888999999999888887777655444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=76.75 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhcCC------CchHHHHHHH
Q 017193 16 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVIS-TFWTLGTIFEAALAWMVMPR------LNWRWLLALS 87 (375)
Q Consensus 16 ~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~~~~~~------~~WR~~f~~~ 87 (375)
++.+++.+++.|++.+.. +....++.|..|+++||+..++.+ ..+.+|..+++.++..+.+. +|||..|.+.
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~ 387 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF 387 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 467788999999998864 556788999999999999999997 57889999999888766543 5799999988
Q ss_pred hHHHHHH-HHHHhcCcCCc
Q 017193 88 SVPSFAV-LLLYGLAPETP 105 (375)
Q Consensus 88 ~i~~ll~-~~~~~~~pESp 105 (375)
++..++. ++..++++|+.
T Consensus 388 ~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 388 AGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 7776655 44566678774
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-05 Score=69.62 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=70.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHh---hcc----chhHHHHH-HHHHHHHhhhhcccceee
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLL---THQ----PVTLTTVL-LFGARMFANGTFAVACVY 303 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 303 (375)
..+..+...++.+..|+++||+|||+.++.+....++...... ... +....... .+..........+....+
T Consensus 44 ~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 123 (396)
T TIGR00882 44 FSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAY 123 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 3455677778889999999999999998765544433222111 110 01110010 111111111111222223
Q ss_pred ccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 304 APEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 304 ~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
..|.- +.++...|.....+.+|..++|.+.+.+.+ .+....+++.+.+.++..++.+...||.
T Consensus 124 ~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 124 IEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33332 223445677778888888889888765543 3344455555555555555555545553
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-07 Score=87.84 Aligned_cols=89 Identities=12% Similarity=0.225 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------
Q 017193 16 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR----------------- 77 (375)
Q Consensus 16 ~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~----------------- 77 (375)
+..|+++.++.|+|.... +...+|+=|.+++|.-+...++......+|+.++.+++......
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~ 220 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS 220 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence 457899999999998875 66789999999999999999999999999998888776543210
Q ss_pred ---C--chHHHHHHHhHHHHHHHHHHhcCcCC
Q 017193 78 ---L--NWRWLLALSSVPSFAVLLLYGLAPET 104 (375)
Q Consensus 78 ---~--~WR~~f~~~~i~~ll~~~~~~~~pES 104 (375)
| .|..=|.+.+...++..+...+.|.+
T Consensus 221 dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 221 DPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 0 37777777777777666655566655
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.6e-08 Score=93.69 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ---PVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
....++.++|+++.|++.||+|||+.+..+.++..+..+...... +.....+.-++.++...+......+|..|..|
T Consensus 53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~ 132 (451)
T PF00083_consen 53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAP 132 (451)
T ss_pred HHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445577789999999999999999998877766655444444333 33322222233333334456778899999999
Q ss_pred ccchhHHHHHHHHHHhHHHhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 310 TSLRATGAGIASAVGRIGGMVCPLVSVGLVT--GCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 310 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
++.|+...++......+|..++..+...... ..+.+...+.+..+..+..++..++.||+
T Consensus 133 ~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 133 PKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888877766666665544322211 11123333344433333344445667887
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.1e-06 Score=77.31 Aligned_cols=137 Identities=15% Similarity=0.011 Sum_probs=84.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+...+.+.++|++.||.+||+++.++..+=.++.+.-.....-+...++=.+.+..-....++...+.+|.||...|
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R 155 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR 155 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence 44566677889999999999999998777655444433322221122211111111122223446778899999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
++..++-+.+..+|+.++-.+...+-...+ ....+..-+++.+++++++.++.+|..
T Consensus 156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999998887766443322222221 112344556666677777766665544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-05 Score=75.62 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=68.6
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhcc----------------------------c-------
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQ----------------------------P------- 278 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~----------------------------~------- 278 (375)
...++..++.++.+++.||.|||+.+..+.++.++..+.....+ +
T Consensus 76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 155 (633)
T TIGR00805 76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP 155 (633)
T ss_pred hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence 33466677888899999999999987666555444333221100 0
Q ss_pred ----------h--hHHHHHH----HHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 279 ----------V--TLTTVLL----FGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 279 ----------~--~~~~~~~----~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
. ......+ ++.++.....++....|..|.+|++.|+...|+.+....+|..+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0 0001111 11222222344567789999999999999999999999988888887766554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.1e-05 Score=70.14 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHhhhhc-ccceeecccccccc--chh
Q 017193 241 PGLLLSAVIVDR-VGRKISMAIMSILTFIFLLPLLTHQ--PVTLTTVLLFGARMFANGTF-AVACVYAPEVYPTS--LRA 314 (375)
Q Consensus 241 ~g~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~El~P~~--~R~ 314 (375)
...+++||+.|| +|+|+.+..+.++..+.-+.+.... ......+ .......++|.. +......+|++|++ .|-
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i-~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD 154 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYI-GLALIIVGTGLFKPNISSLLGELYPKDDPRRD 154 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHH-HHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence 356889999999 6999988777666555444433321 1111111 111112223332 45667888999873 388
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 315 TGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
.++++-++..++|++++|.+.+.+-+..+.+..+-..+.-...+.+..++..
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888889999999999999876665544444344444444444433333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00062 Score=64.81 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhc--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHH
Q 017193 15 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI--PASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPS 91 (375)
Q Consensus 15 ~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~--p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ 91 (375)
+.....++=++..+|.... .++=.++.|.. .++.||...+.......+|.+++..++....+..++|..|.+.++.+
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~ 164 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP 164 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence 4445555555555555543 44446677776 23337888888888889999999988887777889999998887655
Q ss_pred HHH-HHHHhcCcC
Q 017193 92 FAV-LLLYGLAPE 103 (375)
Q Consensus 92 ll~-~~~~~~~pE 103 (375)
++. +......+|
T Consensus 165 ~l~~~~~~~~~~e 177 (433)
T PF03092_consen 165 LLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHhhhh
Confidence 554 344444555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0022 Score=59.56 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=72.5
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHH
Q 017193 9 LSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP--RLNWRWLLAL 86 (375)
Q Consensus 9 ~~~~~~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~WR~~f~~ 86 (375)
+..+.++...+-+.-+.-|++.+...+..+|+=-..|+++=.++.+......-+|..++++++-.+.. ..+.+.+..+
T Consensus 87 lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i 166 (412)
T PF01770_consen 87 LLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI 166 (412)
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 34455788888999999999888777777887666788877799999989888888888888776543 4567888777
Q ss_pred HhHHHHHHHHHHhcCcCCch
Q 017193 87 SSVPSFAVLLLYGLAPETPK 106 (375)
Q Consensus 87 ~~i~~ll~~~~~~~~pESp~ 106 (375)
......+.++..+++|-.++
T Consensus 167 sl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 167 SLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHcCCCCc
Confidence 76544445555566777554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0003 Score=66.99 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHhhhhhHHHHHHHHHhh----hCchH-HHHHHHHHHHHHHHHHhhccc--h--h-HHHH-HHHHHHHHhhhhcccce
Q 017193 233 FITSLAELPGLLLSAVIVDR----VGRKI-SMAIMSILTFIFLLPLLTHQP--V--T-LTTV-LLFGARMFANGTFAVAC 301 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~----~gRr~-~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~-~~~~~~~~~~~~~~~~~ 301 (375)
.+..+...+..++.|.++|| .|||+ .++.+.....+....+....+ . . .... ..+..............
T Consensus 42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (437)
T TIGR00792 42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW 121 (437)
T ss_pred HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence 34445667788889999998 57754 455554444443333322111 1 1 1111 11111111111223446
Q ss_pred eecccccc-ccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 302 VYAPEVYP-TSLRATGAGIASAVGRIGGMVCPLVSVGLVTG-------CHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 302 ~~~~El~P-~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
++.+|+.+ .+.|++..++....+.+++.+++.+.+.+... .+....+.+.+++..+..+..++..||++
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 77889874 57899999998888888777766554444321 11222345555555556555556666654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0028 Score=60.50 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=141.5
Q ss_pred HhhhcCCC-c--hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHHHH-HHHHhc
Q 017193 25 LVGIGLGS-G--PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSFAV-LLLYGL 100 (375)
Q Consensus 25 i~G~~~G~-~--~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~ll~-~~~~~~ 100 (375)
+.|+.-|. . .....|++.++..++|....++.+.++..|..+++.++.......+--..|.+..+..++. ...+.+
T Consensus 119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~ 198 (463)
T KOG2816|consen 119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF 198 (463)
T ss_pred hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence 55665543 2 3456899999999999999999999999999998888887776778888888887777666 456778
Q ss_pred CcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHH
Q 017193 101 APETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIR 180 (375)
Q Consensus 101 ~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (375)
+|||-.-- +.+++ +..+.. ..+. ...+. ...+....+.+.+|
T Consensus 199 l~Esl~~~----~~~~~---------------~~~~~~------~~~~----~~~~~---------~~~~~~~~~~~~~r 240 (463)
T KOG2816|consen 199 LPESLQEK----ERSDA---------------TLRELT------PGSL----DSSHV---------ADAFQSLTKVGPDR 240 (463)
T ss_pred cccccCcc----ccccc---------------cccccC------CCcc----cchhh---------hhhhhhhcccCCCc
Confidence 99986410 00000 000000 0000 00000 00111122222222
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHH-HHHhhhCchHHH
Q 017193 181 TTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSA-VIVDRVGRKISM 259 (375)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-~l~d~~gRr~~~ 259 (375)
..+.+....+ +.+.. .....+.....+.-... +.+...........+.....+.++.. .+...+|-|+..
T Consensus 241 ~~l~l~l~~~---~~~~~-----~~~~~~~~~~~yl~~~f-~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i 311 (463)
T KOG2816|consen 241 LLLLLLLVAF---LSSLP-----EAGGASDVLLLYLKAKF-GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLI 311 (463)
T ss_pred cchHHHHHHH---HHHHH-----HhcCceeEEEEEEeeec-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 2222221111 11110 00000000000000000 11111111111223344455555555 777888888866
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 260 AIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
..+...-.+....+.+.++.+......... .+.....+...++.+-+...+.+++.+++...+..+.+.++|.+...++
T Consensus 312 ~lGl~~~~~~~~~~af~~~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 312 SLGLLSEFLQLLLFAFATETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hHHHHHHHHHHHHHHHhccchhhhHHHHHH-HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 666655555545555555444322211111 1222344566677888889999999999999999999999988876554
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-05 Score=70.35 Aligned_cols=135 Identities=23% Similarity=0.243 Sum_probs=96.1
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
++..++.+..-|.++|+.|||..+....+.+.+-........ ++..+ ...........+....+|.++....+.|..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 455567778889999999999998887776665444333221 22111 111111112344667889999999999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
..|+.+.+-+.+..++|..........+...++.+-++...+..++..++.||+...+
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 9999999999999999988877776666666667777777778888888889987543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=69.16 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017193 15 NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV 74 (375)
Q Consensus 15 ~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~ 74 (375)
.-+.++++|++.|+|.|.....=.|++.....+.|-++.+....+..+|.++++.++..+
T Consensus 129 ~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 129 VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 567889999999999998777778999988888899999998888888998888877654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00072 Score=66.84 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------C-
Q 017193 18 SLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPR-----------------L- 78 (375)
Q Consensus 18 ~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~-----------------~- 78 (375)
+++++-++.|+|.-. .+...+|+=|.+.++.-....++....-.+|.+++.+++.+.... |
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 678899999998876 466789999999999999999999998899998888887664211 0
Q ss_pred -chHHHHHHHhHHHHHHHHHHhcCcCCc
Q 017193 79 -NWRWLLALSSVPSFAVLLLYGLAPETP 105 (375)
Q Consensus 79 -~WR~~f~~~~i~~ll~~~~~~~~pESp 105 (375)
.|+.=|++++...++..+..+++|...
T Consensus 319 GAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 319 GAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 388888888888888777777777764
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.025 Score=52.32 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHhHHHH
Q 017193 20 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRL-NWRWLLALSSVPSF 92 (375)
Q Consensus 20 ~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~WR~~f~~~~i~~l 92 (375)
.+.=++.|+|.+.. .....++.+.+|+|+|+++.++.-.+.-+|.++++.+.....+.+ .=|....++..+.+
T Consensus 93 ~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 93 ALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 34445556666654 344578899999999999999999999999999998876665544 34665555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00094 Score=63.86 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=91.3
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH--HhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP--LLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
..+.+++.+-++++.||+|-|+++..+.+++++..+. .......+...++=+..+......++....+.+.-.|++.|
T Consensus 83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er 162 (466)
T KOG2532|consen 83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER 162 (466)
T ss_pred HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence 4666788888899999999999988887776654333 22222222222222333333344667888899999999999
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhc
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTG-CHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
++..++.....+++.+++-.+.+.+-++ .|....+++++.+.++..++.+++
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887777777766 555567778887776655544443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0015 Score=56.90 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh--cc----chhHHHHHHHHHHHHhhhh-cccce
Q 017193 229 YVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT--HQ----PVTLTTVLLFGARMFANGT-FAVAC 301 (375)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~-~~~~~ 301 (375)
.......+++.-.| +.+|.+.|+.|.|.+++++.+.....-..+.. .. ...+...+........... .+...
T Consensus 40 ~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~l 118 (250)
T PF06813_consen 40 NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASL 118 (250)
T ss_pred HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHH
Confidence 33345556665554 78899999999999988877665543332221 11 1112221111111111111 12333
Q ss_pred eeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc
Q 017193 302 VYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG 341 (375)
Q Consensus 302 ~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (375)
.-..+-||. .||++.|+.-....+.+.+-..+...+...
T Consensus 119 vt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 119 VTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 445588985 699999999999999888888777666554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0018 Score=60.65 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHH-HHHHHHh-hccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTF-IFLLPLL-THQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
+..+...++..+.+.++||.|||.........+. ++..... ..++.+...+.......+.....+...++..| +.+
T Consensus 47 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~ 124 (382)
T TIGR00902 47 AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT--WQK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH--HHH
Confidence 3445566778889999999998654322211111 1111111 12222222222111222222233444445444 256
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHH
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLL 351 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (375)
.|+++.|.....+.+|..++|.+...+.+..+....+.+.
T Consensus 125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 7899999999999999999999888777655433344333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0041 Score=57.06 Aligned_cols=135 Identities=18% Similarity=0.125 Sum_probs=86.6
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH---QPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
.+.....+-++++.+|+|+|.-++.+..++++...++... ..........|.........-+..-.|.+.+.|.+..
T Consensus 59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a 138 (422)
T COG0738 59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA 138 (422)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH
Confidence 4455677788999999999999888877766655544321 1222222333333332222334556788889999888
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhcc-------------------cchhHHHHHHHHHHHHHHHHHHhc-cccccC
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVTG-------------------CHQTAAIFLLAVVIVLSIVCILLF-PFETKG 371 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~-~pet~~ 371 (375)
+.-.++....+.+|++++|.+...++.+ .....++...+....+.++..... .||.+.
T Consensus 139 ~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 139 AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 8889999999999999999988776652 111234555555555555544444 366553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=59.65 Aligned_cols=128 Identities=21% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHH-HHHHHHHHh---hccc-hhHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 242 GLLLSAVIVDRVGRKISMAIMSIL-TFIFLLPLL---THQP-VTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 242 g~~~~~~l~d~~gRr~~~~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
+.++..+..||.|||+..+....+ ...+...+. .... ..+.....+...++....-...-.+..|..+.+.++..
T Consensus 55 ~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~ 134 (390)
T TIGR02718 55 APLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKG 134 (390)
T ss_pred HHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence 334445667888988876444322 221222222 1111 11111222222122222223344567777777777777
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 317 AGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
.+.......+|..+++.....+.+..+....+++.+++.++..+..++++||.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 66666555777777776555555555544566666666666566655555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0024 Score=59.73 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchH----HHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHhhhhcccceeeccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKI----SMAIMSILTFIFLLPLLT-HQPVTLTTVLLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 306 (375)
..+..+..+++.++.+.+.||.|||. .+..... +..+.... .++.+...+..+..........+...++..+
T Consensus 45 ~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~ 121 (382)
T PRK11128 45 LGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL---LFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANT 121 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 34445666778888999999999843 2222111 11111122 2223322222222222222233334444444
Q ss_pred cccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 307 VYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 307 l~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
. .+.|+.+.+.....+.++..++|.+...+.+..+....++..++..++..+ ..++.||.
T Consensus 122 ~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 122 W--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred H--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence 4 345778888888888899999999888776655443444444433333333 33344554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=61.72 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=70.7
Q ss_pred HhhhhhHHHHHHHHHhhhC-----chHHHHHHHHHHH-HHHHHHhhccch-hHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 236 SLAELPGLLLSAVIVDRVG-----RKISMAIMSILTF-IFLLPLLTHQPV-TLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~g-----Rr~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
.+...+-. +.|.++||++ ||+.++.+.+++. .....+....+. .......+...++........-.+..|..
T Consensus 71 ~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~ 149 (468)
T TIGR00788 71 SLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERI 149 (468)
T ss_pred HHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 34434444 4899999997 6777766665552 222222211221 11122233333333333345667888888
Q ss_pred cccchhH---HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 309 PTSLRAT---GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 309 P~~~R~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+ +.++. ..++.+....+|..+++.+.+.+.+..+....+++.+++.++. ....++.||.+
T Consensus 150 ~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 150 R-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred h-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 8 44433 3444555555788888888776666544444555555555555 34445567754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00074 Score=65.38 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-Hhhh-hcccceeeccccccccchhH
Q 017193 238 AELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARM-FANG-TFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 238 ~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~El~P~~~R~~ 315 (375)
.......+.+.+.||+|.|.+.+.+.+++....+.-.+..+.+ ...+.+.... .+.+ .+....++.. .+..+.|+.
T Consensus 93 ~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~-~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~l 170 (509)
T KOG2504|consen 93 VYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW-QLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRAL 170 (509)
T ss_pred HHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHH
Confidence 3455677888999999999999998888877666555544433 2222222211 1111 2222333344 455777999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPF 367 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 367 (375)
|.|++..-..+|.++-|.+.-.+++..+......+++.+.+-+.++...+.|
T Consensus 171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988888888777777888888888777777777766
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0007 Score=62.89 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc---cch-hHHHHHH---HHHHHHhhhhcccceeec
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH---QPV-TLTTVLL---FGARMFANGTFAVACVYA 304 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 304 (375)
..+..++.+.|-++.|++.||+|||++....+++..++.++.... .+. .....+. +..++...|=+++.-+++
T Consensus 90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~ 169 (538)
T KOG0252|consen 90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIM 169 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHh
Confidence 345567788999999999999999999877666665555533321 112 1111111 223333445568888999
Q ss_pred cccccccchhHHHHHHHHHHhH
Q 017193 305 PEVYPTSLRATGAGIASAVGRI 326 (375)
Q Consensus 305 ~El~P~~~R~~~~g~~~~~~~~ 326 (375)
+|-.-.+.|++-.+...+++.+
T Consensus 170 SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 170 SESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred hhhhhhccccceeEEEEEecch
Confidence 9999999999988887666554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.034 Score=52.66 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=68.2
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhh--HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 5 VAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGM--LMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 5 i~~~~~~~~--~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
++-++.+.. .+...+.++=.+.++|.|.. +-..++++|..|++..-+ ..+++-...++|.++++.+...+..+.+
T Consensus 104 iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 104 IGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred HHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 444445555 36778889999999999987 656678899888765322 2345556788999999999888888899
Q ss_pred hHHHHHHHhHHHHHHHH
Q 017193 80 WRWLLALSSVPSFAVLL 96 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~ 96 (375)
|...|...++-..+.++
T Consensus 184 ~~~gF~~aavGm~~gl~ 200 (498)
T COG3104 184 WHVGFGLAAVGMIIGLV 200 (498)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988765554433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.095 Score=48.86 Aligned_cols=97 Identities=22% Similarity=0.104 Sum_probs=55.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCC-chhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCch-
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGS-GPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNW- 80 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~W- 80 (375)
+.++-++.++++|.+.=+++-.+.|++.|. +..--.+ +...|+. ..+.++.+.+.|.++++........ .++
T Consensus 99 ~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s 172 (402)
T PF02487_consen 99 SAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLS 172 (402)
T ss_pred HHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcC
Confidence 456666777788999888999999998885 4433333 3455543 2344555555566666554333322 344
Q ss_pred -HHHHHHHhHHHHHH-HHHHhcCcCCc
Q 017193 81 -RWLLALSSVPSFAV-LLLYGLAPETP 105 (375)
Q Consensus 81 -R~~f~~~~i~~ll~-~~~~~~~pESp 105 (375)
|..+.+....+++. +..++.+|.++
T Consensus 173 ~~~tll~~~~lp~~~~~~~f~~L~~~~ 199 (402)
T PF02487_consen 173 PRTTLLIMLVLPAIFLLSYFFLLPSPP 199 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66666655444444 34444455443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0057 Score=58.54 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=57.1
Q ss_pred HHHhhhhhHHHHHHHHHhh----hCchH-HHHHHHHHHHHHHHHHhhc-c---ch--hHHHHHHHHHHHHhhhhccccee
Q 017193 234 ITSLAELPGLLLSAVIVDR----VGRKI-SMAIMSILTFIFLLPLLTH-Q---PV--TLTTVLLFGARMFANGTFAVACV 302 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~----~gRr~-~~~~~~~~~~~~~~~~~~~-~---~~--~~~~~~~~~~~~~~~~~~~~~~~ 302 (375)
+.-+...+...+.|+++|| .|||+ .++.+.+...+........ . .. ....+.................+
T Consensus 53 i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a 132 (444)
T PRK09669 53 VVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCA 132 (444)
T ss_pred HHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 3334455667778999998 56654 4544544443333222211 1 11 11111111111122223344567
Q ss_pred ecccccc-ccchhHHHHHHHHHHhHHHhHHHHHHHHh
Q 017193 303 YAPEVYP-TSLRATGAGIASAVGRIGGMVCPLVSVGL 338 (375)
Q Consensus 303 ~~~El~P-~~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 338 (375)
+.+|+.+ .+.|.+..++....+.+|+.+++.+...+
T Consensus 133 l~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl 169 (444)
T PRK09669 133 MPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL 169 (444)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889884 47799888888888888877776654433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.015 Score=56.05 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHHHhh----hCchHH-HHHHHHHHHHHHHHHhhc-c-c--h-h-HHHHHHHHHHHHhhhhcccceeeccc
Q 017193 238 AELPGLLLSAVIVDR----VGRKIS-MAIMSILTFIFLLPLLTH-Q-P--V-T-LTTVLLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 238 ~~i~g~~~~~~l~d~----~gRr~~-~~~~~~~~~~~~~~~~~~-~-~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~E 306 (375)
...+.-.+.|.++|| .|||+. ++.+.+..++....+... + + . . ...+.......+........++..+|
T Consensus 57 ~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~ 136 (460)
T PRK11462 57 LDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGV 136 (460)
T ss_pred HHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344566778999997 577655 444544444433322211 1 1 1 1 11111111122222333456788999
Q ss_pred ccc-ccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 307 VYP-TSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 307 l~P-~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
+.+ .+.|++..++-...+.+++.+++.+...+.
T Consensus 137 lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 137 ITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988 588999999999888888877776654444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.15 Score=48.51 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhh---hCchHHHHHHHHHHHHHHHHHhhc---cc---------------hhHHHHHHHH
Q 017193 230 VNVFITSLAELPGLLLSAVIVDR---VGRKISMAIMSILTFIFLLPLLTH---QP---------------VTLTTVLLFG 288 (375)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~l~d~---~gRr~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~ 288 (375)
++.+..+.+++.+....+.+.+| +||++.+..+..+-....+..... +. ..+..++.+.
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 44566677778888888888766 578887766655544433332211 10 1122333333
Q ss_pred HHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 289 ARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 289 ~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
.++.=....+..+.+.+.++ ++.|+++.++.-.-..+.+.++.+..+
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33332334456778888999 556999999988887777666555444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=57.22 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=55.7
Q ss_pred HhhhhhHHHHHHHHHhh----hCch-HHHHHHHHHHHHHHHHHhhcc--chh--HH-HHHH-HHHHHHhhhhcccceeec
Q 017193 236 SLAELPGLLLSAVIVDR----VGRK-ISMAIMSILTFIFLLPLLTHQ--PVT--LT-TVLL-FGARMFANGTFAVACVYA 304 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~----~gRr-~~~~~~~~~~~~~~~~~~~~~--~~~--~~-~~~~-~~~~~~~~~~~~~~~~~~ 304 (375)
-+...+...+.|.++|| +||| +.++.+.+.+.+....+.... +.. .. ..+. .....+.........+..
T Consensus 52 ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~ 131 (473)
T PRK10429 52 RIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLV 131 (473)
T ss_pred HHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhh
Confidence 34445566778999995 5885 445555555544433332211 111 11 1111 111112222334456788
Q ss_pred cccc-cccchhHHHHHHHHHHhHHHhHHHHHHH
Q 017193 305 PEVY-PTSLRATGAGIASAVGRIGGMVCPLVSV 336 (375)
Q Consensus 305 ~El~-P~~~R~~~~g~~~~~~~~~~~~~~~~~~ 336 (375)
+|+. ..+.|.+..+.-...+.+++.+.+.+..
T Consensus 132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 4788999999877777777666655443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=60.74 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=94.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
.+..++.+++.+.++++.||++-.+.+..+.++-.++.+.-...++.+...++=++.+.+-.+.++..-.+.+.-|..+.
T Consensus 88 t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e 167 (495)
T KOG2533|consen 88 TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE 167 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh
Confidence 45557788999999999999995555544443333333222223333333344444555555677888889999999999
Q ss_pred hhHHHHHHHHHHhHHHhHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 313 RATGAGIASAVGRIGGMVCPLVSVGLVT------GCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 313 R~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
|++-+|+-++.+.+|+++++.+...+.. ..+....+++-+++.+..+++.+++.|+..
T Consensus 168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 9999999999999999999888776432 112234566777777888877777777643
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=61.25 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=74.1
Q ss_pred hHHHHHHHHHh----hhCchHH-HHHHHHHHHHHHHHHhhccc----h--h--HHHHHHHHHHHHhhhhcccceeecccc
Q 017193 241 PGLLLSAVIVD----RVGRKIS-MAIMSILTFIFLLPLLTHQP----V--T--LTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 241 ~g~~~~~~l~d----~~gRr~~-~~~~~~~~~~~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
+.-.+.|.++| |.|||+. ++.+.+..++....+....+ . . ...+..+....+.........++.+|+
T Consensus 52 i~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~l 131 (428)
T PF13347_consen 52 ITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPEL 131 (428)
T ss_pred hcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccc
Confidence 33446788999 7887765 44555555554444432211 1 1 111111112222223334567899999
Q ss_pred ccc-cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 308 YPT-SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-------QTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 308 ~P~-~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
.++ +.|.+..+.....+.+|+.+...+.+.+.+..+ ......+++++..++.++..+..+|
T Consensus 132 t~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 132 TPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 996 689999999999888888766666555543222 2233445566666666666666777
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.049 Score=52.49 Aligned_cols=138 Identities=21% Similarity=0.242 Sum_probs=78.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHH-HHHHHHHHHHHHhhcc-chhH-HHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAI-MSILTFIFLLPLLTHQ-PVTL-TTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
+..+...+-..+.|-++|+-|||+.++. ...++.++...+.... ..+. ..++..+...+.........++.+|+.+.
T Consensus 78 is~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~ 157 (477)
T PF11700_consen 78 ISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARP 157 (477)
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Confidence 3344445556667888999887776544 3444444444443322 2222 22222233333333444567899999999
Q ss_pred cch--------------------------hHHHHHHHHHHhHHHhHHHHHHHHhhcccch--------hHHHHHHHHHHH
Q 017193 311 SLR--------------------------ATGAGIASAVGRIGGMVCPLVSVGLVTGCHQ--------TAAIFLLAVVIV 356 (375)
Q Consensus 311 ~~R--------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 356 (375)
+.+ ++-.+.....|++|+.+.-.+...+....+. -..+.+.++.-+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~ 237 (477)
T PF11700_consen 158 EPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWL 237 (477)
T ss_pred ChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence 888 9999999999999998876654433321111 122333444444
Q ss_pred HHHHHHHhccccccC
Q 017193 357 LSIVCILLFPFETKG 371 (375)
Q Consensus 357 ~~~~~~~~~~pet~~ 371 (375)
+-.+-.+++.||.++
T Consensus 238 vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 238 VFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHhCCCCCC
Confidence 444444555666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.004 Score=59.10 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=82.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+.-.+.++..++.+++++|+|+-+++..+..+...=.+.+...++.|..+.+-+.-.......|...-+|.+...|++.|
T Consensus 414 ~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~ 493 (618)
T KOG3762|consen 414 LCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR 493 (618)
T ss_pred hhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence 44456788889999999999999988777666555444444556666544444444444445667778899999999999
Q ss_pred hHHHHHHHHHHh-HHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 017193 314 ATGAGIASAVGR-IGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSI 359 (375)
Q Consensus 314 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (375)
++++++...... +|=.++..+.+.+....+.--.+.++++.+++..
T Consensus 494 at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l 540 (618)
T KOG3762|consen 494 ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTL 540 (618)
T ss_pred HHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHH
Confidence 999999877753 4444445444444444444334445544444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.081 Score=53.01 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHhhc-cc-----hhHH-HHHHHH-HHHHhhhhcccceeecccccccc
Q 017193 241 PGLLLSAVIVDR-VGRKISMAIMSILTFIFLLPLLTH-QP-----VTLT-TVLLFG-ARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 241 ~g~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~-~~-----~~~~-~~~~~~-~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
+..++++++.|+ +||++.++.+.++..+....+... .+ .... ..+.+. ......+.-+...+...|.++.+
T Consensus 38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~ 117 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER 117 (654)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence 456778889997 799998877766554433322211 11 1111 111111 11111222245566777888653
Q ss_pred ---chhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 312 ---LRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 312 ---~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
.|...+.+.+...++|+.+++.+.+.+-
T Consensus 118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 118 QLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998888664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.064 Score=50.14 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=64.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH-Hhhcc----chhHHHHHHHHHHHHhhhh----cccceee
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP-LLTHQ----PVTLTTVLLFGARMFANGT----FAVACVY 303 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~ 303 (375)
.+..+.+++-.+.+.|+.||.|=|...+++....++...+ ....+ +...- -+.+..+...... ..++.-+
T Consensus 86 mIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~lPski 164 (480)
T KOG2563|consen 86 MIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILGLPSKI 164 (480)
T ss_pred HHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhccccHH
Confidence 3446777888899999999999999988877766653332 11111 11111 1111111111111 1223334
Q ss_pred ccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 304 APEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 304 ~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
..--||++.|++|..++.+.+.+|..++..+.+.+.
T Consensus 165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence 455699999999999999998888877766555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.088 Score=48.10 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=72.4
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhH
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRAT 315 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~ 315 (375)
..+..+|+..-+.+.|++|||+.......+.+....+-... ++...+.+.-....++.|..+..-++-.|..|+..|..
T Consensus 123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-pnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~ 201 (528)
T KOG0253|consen 123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-PNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWL 201 (528)
T ss_pred HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-CCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCc
Confidence 45567788888999999999998877776666554432222 22111222222223333445666677889999999988
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 316 GAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
-.-+. +.-.+|......+.-..+... ++...+++....+..+...++..||..
T Consensus 202 ~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESp 254 (528)
T KOG0253|consen 202 LTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESP 254 (528)
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence 76655 333344444443332223333 233333333333333334445577854
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.026 Score=53.80 Aligned_cols=127 Identities=24% Similarity=0.207 Sum_probs=73.0
Q ss_pred HHHHHHHHhhh-----CchHHHHHHHHHHHHHHHHHhh--c--cchhHHHHHHHHHHHHhhhhcccceeeccccc---cc
Q 017193 243 LLLSAVIVDRV-----GRKISMAIMSILTFIFLLPLLT--H--QPVTLTTVLLFGARMFANGTFAVACVYAPEVY---PT 310 (375)
Q Consensus 243 ~~~~~~l~d~~-----gRr~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~---P~ 310 (375)
-.+.|.++|-+ +||+.++++.+++.+....+.. . .+.....++.+...+.....-...-+...|.. |.
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 45678999986 3666676666666443333322 1 11222222223322222222223334455554 55
Q ss_pred cchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 311 SLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+ |+.-++.++.+..+|+.++..+.+.+.+..+....+.+.+.+..+..+..+++.+|.+
T Consensus 121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~ 179 (433)
T PF03092_consen 121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK 179 (433)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence 5 8888999999888999998888777766554444455555555556556666677643
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=43.66 Aligned_cols=53 Identities=23% Similarity=0.446 Sum_probs=36.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhc------CCCchHHHHHHHhHHHHHHHHHHh
Q 017193 46 ASNRGMLMVVISTFWTLGTIFEAALAWMVM------PRLNWRWLLALSSVPSFAVLLLYG 99 (375)
Q Consensus 46 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~------~~~~WR~~f~~~~i~~ll~~~~~~ 99 (375)
.|+|+..+.+...+.++|.+++..- +.+. ...+||+++.+.++..++-++.+.
T Consensus 1 ~k~K~~~s~~n~~gf~iG~ii~~ip-F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 1 QKKKSILSQFNPWGFNIGTIIVNIP-FLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CCccceeeeeccccchhhHHHHHhh-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888899999886543 2222 123699999888777666555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.52 Score=44.97 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=27.3
Q ss_pred hcccceeeccccccccchhHHHHHHHHHHhHHHhHHHH
Q 017193 296 TFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPL 333 (375)
Q Consensus 296 ~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~ 333 (375)
..+....+.++..+++.|-.+..+....-.+|-.++..
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999988877776666655555544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.033 Score=49.27 Aligned_cols=87 Identities=28% Similarity=0.424 Sum_probs=65.1
Q ss_pred HHHHHHhhhh--HHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCC-CchhhHHHHHHH-HHHHHHHHHHHHHHHhc--CCC
Q 017193 6 AGLLSAFSLN--YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPA-SNRGMLMVVIST-FWTLGTIFEAALAWMVM--PRL 78 (375)
Q Consensus 6 ~~~~~~~~~~--~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~--~~~ 78 (375)
+.++.++..+ ...+++.|+.+|++.|.. +....++.|+.|+ ++|+...+.... ...+|.++++.++..+. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T COG0477 82 GTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLW 161 (338)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666665 899999999999999864 6677899999998 778888888777 57778888775554433 246
Q ss_pred chHHHHHHHhHHHH
Q 017193 79 NWRWLLALSSVPSF 92 (375)
Q Consensus 79 ~WR~~f~~~~i~~l 92 (375)
+||..|.+......
T Consensus 162 ~~~~~~~~~~~~~~ 175 (338)
T COG0477 162 GWRAAFLLAALLGL 175 (338)
T ss_pred chHHHHHHHHHHHH
Confidence 89997666655543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.13 Score=48.82 Aligned_cols=101 Identities=18% Similarity=0.088 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhhh----CchH-HHHHHHHHHHHHHH-HHhhcc----ch-hHHHHHHHHHHHHhhhhcccceeeccccc
Q 017193 240 LPGLLLSAVIVDRV----GRKI-SMAIMSILTFIFLL-PLLTHQ----PV-TLTTVLLFGARMFANGTFAVACVYAPEVY 308 (375)
Q Consensus 240 i~g~~~~~~l~d~~----gRr~-~~~~~~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~ 308 (375)
.+.-.+.|.++||. |||+ .++.+.+...+... .+...+ .. ..+.+..+....+......+..+..+|+-
T Consensus 62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT 141 (467)
T COG2211 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT 141 (467)
T ss_pred HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence 34556688899974 5544 45555444333322 222111 11 11222222233333344455678899998
Q ss_pred cc-cchhHHHHHHHHHHhHHHhHHHHHHHHhhc
Q 017193 309 PT-SLRATGAGIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 309 P~-~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
++ +.|.+-.++-...+.+++.+...+.+++..
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 779999999999999998888777766654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.083 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHH
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAI 261 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~ 261 (375)
+..+..++...+.|.+.||+|.|+-++.
T Consensus 51 ~~~~~~l~~qp~~G~i~Dklg~kK~Ll~ 78 (412)
T PF01306_consen 51 AGSLFALLAQPVYGFISDKLGLKKHLLW 78 (412)
T ss_dssp HHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence 4445667777889999999996665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.27 Score=47.09 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhh----CchHHH-HHHHH
Q 017193 233 FITSLAELPGLLLSAVIVDRV----GRKISM-AIMSI 264 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~----gRr~~~-~~~~~ 264 (375)
.+..+...+..++.|.++||. |||+.. ..+.+
T Consensus 51 ~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 51 LLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 455566677888999999996 666644 44433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.98 Score=43.39 Aligned_cols=41 Identities=2% Similarity=-0.139 Sum_probs=37.1
Q ss_pred cceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 299 VACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 299 ~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
+.|.+..|++..+.-.+-.++....++++..+++.+...+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998776543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.3 Score=46.69 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=73.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHH-h-hccch--hHHHHHHHHHHHHhhhhcccceeeccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGR-KISMAIMSILTFIFLLPL-L-THQPV--TLTTVLLFGARMFANGTFAVACVYAPE 306 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gR-r~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E 306 (375)
.....++..+++++.++...|.++ |+.++.+.+++.+.-+.+ . ...++ ...+.+.-.....+.+..+..-.|.+.
T Consensus 77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~ 156 (488)
T KOG2325|consen 77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIAD 156 (488)
T ss_pred HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHh
Confidence 334566777888889999999884 455555555555433333 1 12222 111111111112223344566778888
Q ss_pred cccccchhHHHHHHHHHHhHHHhHHHHHHH---Hhhcc---------cc-hhHHHHHHHHHHHHHHHHHHhcccc
Q 017193 307 VYPTSLRATGAGIASAVGRIGGMVCPLVSV---GLVTG---------CH-QTAAIFLLAVVIVLSIVCILLFPFE 368 (375)
Q Consensus 307 l~P~~~R~~~~g~~~~~~~~~~~~~~~~~~---~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~pe 368 (375)
-.-.+.|.++++......-++.+++|.+-+ .+.+. .+ ...+.++.+.+.++..++.+++..|
T Consensus 157 ~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 157 ASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred ccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 666677777777666644455555554322 12110 11 1345577777777777766666544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.8 Score=39.67 Aligned_cols=133 Identities=15% Similarity=0.057 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccc--ee---eccccccccch
Q 017193 239 ELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVA--CV---YAPEVYPTSLR 313 (375)
Q Consensus 239 ~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~El~P~~~R 313 (375)
..+...+.|.+.||+|||+.-+...+.-.+..+.... .+.....+-=+..+......+... |. ....=+|.+..
T Consensus 82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L 160 (354)
T PF05631_consen 82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL 160 (354)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3455667788999999999876655544433332111 111111111111111111111111 11 12234677666
Q ss_pred hHHHHHHHHH-HhHHHhHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017193 314 ATGAGIASAV-GRIGGMVCPLVSVGLVTGC--HQTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 314 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
+..++..... +.+.++.+..+...+.+.. +...++..-..+..++++++...-+|+.|.
T Consensus 161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 6666655522 3333444444433333322 234565555555666666666555676654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.91 Score=41.48 Aligned_cols=86 Identities=19% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCCchhHH-HH-HhhhcCCCchhhHH-HHHHHHHHHHHH----HHHHHHHHhcCCCch-
Q 017193 9 LSAFSLNYLSLVTLRGLVGIGLGSGPVCL-SW-FLEFIPASNRGMLM-VVISTFWTLGTI----FEAALAWMVMPRLNW- 80 (375)
Q Consensus 9 ~~~~~~~~~~l~~~R~i~G~~~G~~~~~~-~~-~~E~~p~~~Rg~~~-~~~~~~~~~G~~----~~~~~~~~~~~~~~W- 80 (375)
++-..+|++.++++|++.|++-.....+. +| +.|+..++.+.... ..+..+..++.- .+.+++-...+..+-
T Consensus 114 l~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 114 LTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 34445799999999999999888765554 65 57886555443332 222222213322 222333333333333
Q ss_pred -HHHHHHHhHHHHHH
Q 017193 81 -RWLLALSSVPSFAV 94 (375)
Q Consensus 81 -R~~f~~~~i~~ll~ 94 (375)
..||.......++.
T Consensus 194 ~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVA 208 (354)
T ss_pred CcchHHHHHHHHHHH
Confidence 66777765554444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.36 Score=38.81 Aligned_cols=98 Identities=15% Similarity=0.023 Sum_probs=61.6
Q ss_pred hhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHH
Q 017193 237 LAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATG 316 (375)
Q Consensus 237 ~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~ 316 (375)
....++++++..+.+++|.|+.++++.+.-.+........ +.+.........++...-.|...-.|..|....+.|++-
T Consensus 48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~ 126 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRN 126 (156)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence 4446677888999999999999988877665544433221 222212222222333333445555677888888899998
Q ss_pred HHHHHHHHhHHHhHHHHHH
Q 017193 317 AGIASAVGRIGGMVCPLVS 335 (375)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~ 335 (375)
.++-..+.+.+.+.+..+.
T Consensus 127 ~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 127 TGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888777776666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=45.54 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSF 92 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~l 92 (375)
++++.+.+.-++.|.+.+.. ..+..-..+.+| +.||++.++.-...+++..+-..+...+.+...-+.+......|.+
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~ 172 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAV 172 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46778888888888876653 444444557777 5799999999999999988877776666666566777777777777
Q ss_pred HHHHHHhcCcCCc
Q 017193 93 AVLLLYGLAPETP 105 (375)
Q Consensus 93 l~~~~~~~~pESp 105 (375)
+.++..+++.+-|
T Consensus 173 v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 173 VCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHhhheeccC
Confidence 6665555544443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.099 Score=47.23 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhhhcCCCchhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHhHHH
Q 017193 14 LNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP--RLNWRWLLALSSVPS 91 (375)
Q Consensus 14 ~~~~~l~~~R~i~G~~~G~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~WR~~f~~~~i~~ 91 (375)
++..++=+.-++.|...+.....++|+-+..+|+++.++++..-...-.|...+..++-.... ..+.+.+=.++..-.
T Consensus 93 ~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~ 172 (433)
T KOG3810|consen 93 PSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEV 172 (433)
T ss_pred CCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHH
Confidence 344444455555566555555567788888999999999999888888888877777665433 334555544443333
Q ss_pred HHHHHHHhcCcCCch
Q 017193 92 FAVLLLYGLAPETPK 106 (375)
Q Consensus 92 ll~~~~~~~~pESp~ 106 (375)
.+......++|.-||
T Consensus 173 ~ia~~~A~fLP~v~r 187 (433)
T KOG3810|consen 173 TIAVLLALFLPRVKR 187 (433)
T ss_pred HHHHHHHhhCCCCch
Confidence 333344455565554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.8 Score=43.18 Aligned_cols=46 Identities=28% Similarity=0.358 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHhh
Q 017193 230 VNVFITSLAELPGLLLSAVIVDRVG-RKISMAIMSILTFIFLLPLLT 275 (375)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~l~d~~g-Rr~~~~~~~~~~~~~~~~~~~ 275 (375)
....+..+..+++..+.|.+.||.+ +|+.+....+++++.......
T Consensus 41 ~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 41 ILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777889999999999975 456665655655554444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.8 Score=39.89 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH----Hhhcc-c-hhHHHHHHHHH-HHHhhhhcc---ccee
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLP----LLTHQ-P-VTLTTVLLFGA-RMFANGTFA---VACV 302 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~----~~~~~-~-~~~~~~~~~~~-~~~~~~~~~---~~~~ 302 (375)
.+..+.++.|+++..++.+|+|-.+.-+++...-..++.+ +.... + .......++.. ...=.|.++ ...-
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~q 379 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQ 379 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3555667889999999999999887766554433222221 11112 1 11111111111 111124443 4556
Q ss_pred eccccccccchhHHHHHHHHHHhHHHhHH
Q 017193 303 YAPEVYPTSLRATGAGIASAVGRIGGMVC 331 (375)
Q Consensus 303 ~~~El~P~~~R~~~~g~~~~~~~~~~~~~ 331 (375)
+.+|..|.+.|++-.|+-+..+++...+.
T Consensus 380 i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 380 IMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred hhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998866554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.61 Score=43.34 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=41.1
Q ss_pred hhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc
Q 017193 295 GTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH 343 (375)
Q Consensus 295 ~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (375)
...+..-+..+|..|.+.|+++.++.+.+--+|-+++..+...+++...
T Consensus 105 ~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 105 ASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred HhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 3446677889999999999999999999988888888888887777543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=43.99 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=38.6
Q ss_pred hcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 296 TFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 296 ~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
..+....|.+++.|.+.+++..++...+..+|+.++|.+...+.
T Consensus 27 lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 27 LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44566778899999999999999999999999999999988666
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.12 Score=49.50 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred hhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhcCCCchHHHHHHHhH
Q 017193 12 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVIST-FWTLGTIFEAALAWMVMPRLNWRWLLALSSV 89 (375)
Q Consensus 12 ~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i 89 (375)
+..|.|+.+..-+++|+..|.. ..+..|++..+||+.|..+.++.+. ..++|--++++++.......+=|..|.+.++
T Consensus 455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~gi 534 (618)
T KOG3762|consen 455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGI 534 (618)
T ss_pred HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHH
Confidence 3478999999999999999987 4567899999999999999998766 4688888888888887777777888888877
Q ss_pred HHHHHHHHH
Q 017193 90 PSFAVLLLY 98 (375)
Q Consensus 90 ~~ll~~~~~ 98 (375)
.+++.++..
T Consensus 535 Acl~~l~~~ 543 (618)
T KOG3762|consen 535 ACLVTLALF 543 (618)
T ss_pred HHHHHHHHH
Confidence 776664443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.2 Score=46.73 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhHHHH
Q 017193 17 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN---RGMLMVVISTFWTLGTIFEAALAWMVMPRLNWRWLLALSSVPSF 92 (375)
Q Consensus 17 ~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~~~i~~l 92 (375)
..+.++-++.++|.|+. +...++.+|-.+++. |...-.++-.+.++|.+++..+...+.++++|.+.|.++++..+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 56888899999999987 777888998888763 33444566778899999987776666778999999999887776
Q ss_pred HHHHHHh
Q 017193 93 AVLLLYG 99 (375)
Q Consensus 93 l~~~~~~ 99 (375)
+.++...
T Consensus 114 ~~~~~f~ 120 (372)
T PF00854_consen 114 LALIVFL 120 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.72 Score=40.49 Aligned_cols=101 Identities=25% Similarity=0.316 Sum_probs=56.7
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHhhhhcccceeeccccccc-cc
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQP--VTLTTVLLFGARMFANGTFAVACVYAPEVYPT-SL 312 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~-~~ 312 (375)
.+....+....|.+.||.|||+.+..+........+......+ ........+..........+....+.+|.+|. +.
T Consensus 49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (338)
T COG0477 49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE 128 (338)
T ss_pred HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence 3444556688999999999997766655431221111111111 12111112212222223445677889999998 67
Q ss_pred hhHHHHHHHH-HHhHHHhHHHHHHH
Q 017193 313 RATGAGIASA-VGRIGGMVCPLVSV 336 (375)
Q Consensus 313 R~~~~g~~~~-~~~~~~~~~~~~~~ 336 (375)
|+...+.... ...++..++|.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 129 RGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 45566666664443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.3 Score=28.73 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHH
Q 017193 230 VNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSI 264 (375)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~ 264 (375)
....+..+..+++..+.|.++||.+|++..+....
T Consensus 39 il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 39 ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 33445566778899999999999999887665443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.02 E-value=8.5 Score=36.24 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHHHHHHHH
Q 017193 244 LLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAV 323 (375)
Q Consensus 244 ~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~ 323 (375)
+....+.|.+|-|++++...+...+....+.+.++.....+.-+..+.. .+.-...++|.--..|++.=.++.+.+.+.
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~-~a~evay~sYiys~v~~~~yq~vts~~raa 137 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA-TAAEVAYYSYIYSVVDKEHYQKVTSYTRAA 137 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence 4567889999999999887766555555444444443333222222111 122234556666667888777888887777
Q ss_pred HhHHHhHHHHHHH
Q 017193 324 GRIGGMVCPLVSV 336 (375)
Q Consensus 324 ~~~~~~~~~~~~~ 336 (375)
.-+|-+++..+..
T Consensus 138 ~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 138 TLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.3 Score=34.14 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017193 13 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV 74 (375)
Q Consensus 13 ~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~ 74 (375)
-++.+.++..-.+.|++.+.. .....|+.|...++.|++..+++-.....+.+.+.++.+..
T Consensus 86 ~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 86 YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999976 44458899999999999999887777777777777665553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=85.62 E-value=44 Score=33.89 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchHHHHHHH
Q 017193 19 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASN---RGMLMVVISTFWTLGTIFEAALAWMVMP-------RLNWRWLLALS 87 (375)
Q Consensus 19 l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-------~~~WR~~f~~~ 87 (375)
++++=.+..+|.|+. +...+...|-.+++. |-..-.++-.+.++|.+++..+...+.. ..+|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 556666677777776 666677787776544 3444455666778888887766544432 34699999998
Q ss_pred hHHHHHHHH
Q 017193 88 SVPSFAVLL 96 (375)
Q Consensus 88 ~i~~ll~~~ 96 (375)
++..++.++
T Consensus 168 ~i~m~ia~l 176 (654)
T TIGR00926 168 AILMILALI 176 (654)
T ss_pred HHHHHHHHH
Confidence 877665543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.19 E-value=39 Score=32.89 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017193 37 LSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP 76 (375)
Q Consensus 37 ~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 76 (375)
..+..|+++.++-.+.-++++.+.++|.+++..+......
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988876555443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=83.84 E-value=4.6 Score=37.92 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHHHhhhcCCCchhH-HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017193 12 FSLNYLSLVTLRGLVGIGLGSGPVC-LSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMV 74 (375)
Q Consensus 12 ~~~~~~~l~~~R~i~G~~~G~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~ 74 (375)
+.+|.+..++.=+..|+--|..++. ...+.|-.|+++|...++..+.+-++|.+++..++...
T Consensus 331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3578888888889999977766664 56678889999999999999999999999998887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.32 E-value=6.1 Score=37.11 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhcCCCch-hHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHhHHHHHHH
Q 017193 18 SLVTLRGLVGIGLGSGP-VCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP-RLNWRWLLALSSVPSFAVL 95 (375)
Q Consensus 18 ~l~~~R~i~G~~~G~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~WR~~f~~~~i~~ll~~ 95 (375)
.+.++-++.|.+.|+.. .+=+|+++.+||++-++..+++....-.+..+++.+...+.. ..+=|.-+....+..++.+
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 45666778899999864 455899999999999999999999988888888876555433 2346776665555555555
Q ss_pred HHHhcCcCC
Q 017193 96 LLYGLAPET 104 (375)
Q Consensus 96 ~~~~~~pES 104 (375)
+....+|+.
T Consensus 423 ~~L~~v~~~ 431 (438)
T COG2270 423 LLLLRVKVP 431 (438)
T ss_pred hhEEeecCC
Confidence 555555554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=27 Score=34.26 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhHHHhHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHH
Q 017193 314 ATGAGIASAVGRIGGMVCPLVSVGLVT-GCHQTAAIFLLAVVIVLSIV 360 (375)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 360 (375)
+...|-.+..+.+|+++++.+.+.++- ..+.....++.+.+.+++++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 455677788888888888877665543 34444455555555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 375 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 1e-09 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 59/375 (15%), Positives = 113/375 (30%), Gaps = 67/375 (17%)
Query: 7 GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCL----SWFLEFIPASNRGMLMVVISTFWT 61
G + + + + L L G G G P C W+ RG ++ V +
Sbjct: 110 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKERGGIVSVWNCAHN 165
Query: 62 LGTIFEAALAWMVMPRLN-WRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAH 119
+G L + M N W L + + + V L + + +TP+
Sbjct: 166 VGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ------------- 212
Query: 120 VLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELI 179
S L E + P+ + + +L
Sbjct: 213 --------------SCGLPPIEEY----KNDYPDDYNEKAEQELTAKQIFMQYVLP---N 251
Query: 180 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAE 239
+ LW++ N FVY + L+ + +L + + L E
Sbjct: 252 KL---LWYIAIANVFVYLLRYGILDWSP----------TYLKEVKHFALDKSSWAYFLYE 298
Query: 240 L---PGLLLSAVIVDRV---GRKISMAIMSILTF--IFLLPLLTHQPVTLTTVLLFGARM 291
PG LL + D+V R + L + + T+ + +
Sbjct: 299 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358
Query: 292 FANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVC-PLVSVGLVTGCHQTAAIFL 350
G + ++A E+ P T AG G +GG V + V +
Sbjct: 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418
Query: 351 LAVVIVLSIVCILLF 365
+ +L+++ +++
Sbjct: 419 MIGGSILAVILLIVV 433
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.9 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.86 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.79 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.74 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.71 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.29 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.23 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.17 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.12 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.06 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.82 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 97.6 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=311.30 Aligned_cols=341 Identities=21% Similarity=0.285 Sum_probs=234.8
Q ss_pred hhHHHHHHHH------------------hhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHH
Q 017193 2 LASVAGLLSA------------------FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTL 62 (375)
Q Consensus 2 ~~~i~~~~~~------------------~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~ 62 (375)
+..+++++++ +++|+++++++|+++|++.|+. ++++.|++|++|+++||+..++.+.++..
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhh
Confidence 3457777777 4789999999999999999985 67789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--------CCchHHHHHHHhHHHHHHHHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCC
Q 017193 63 GTIFEAALAWMVMP--------RLNWRWLLALSSVPSFAVLLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPS 134 (375)
Q Consensus 63 G~~~~~~~~~~~~~--------~~~WR~~f~~~~i~~ll~~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~ 134 (375)
|.++++.+++.... .+.||+++.+..+++++.++.++++|||||||..|+|.||+++.++|.+.++..+.+
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~- 252 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQA- 252 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHH-
Confidence 99999888776532 356999999999999999999999999999999999999999999988654321100
Q ss_pred CccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcc
Q 017193 135 GMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCG 214 (375)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (375)
.++.++ .....++ .......++. ++.........+.+...++....+.+.+...
T Consensus 253 ----------~~~~~~--------~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 306 (491)
T 4gc0_A 253 ----------VQEIKH--------SLDHGRK-TGGRLLMFGV--GVIVIGVMLSIFQQFVGINVVLYYAPEVFKT----- 306 (491)
T ss_dssp ----------HHHHHH--------HHHHHHH-HTTHHHHSCC--THHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred ----------HHHHHH--------HHHhhhh-hhhHHHHhcc--cHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----
Confidence 000000 0000000 0011111111 1112222222222222233333333333211
Q ss_pred cchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh---c-cchhHHHH-HHHHH
Q 017193 215 STLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT---H-QPVTLTTV-LLFGA 289 (375)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~-~~~~~ 289 (375)
......+......+.++..+++.+++++++||+|||+.++.+...+.++.+.+.. . .+...... ..+..
T Consensus 307 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 307 ------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp ------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 0111222333445667778899999999999999999988777666554444321 1 12222222 22223
Q ss_pred HHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHH
Q 017193 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG------CHQTAAIFLLAVVIVLSIVCIL 363 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 363 (375)
..+..+..++.|++.+|+||+++|+++.|+++.++++++++++.++|.+.+. .+....+++++++++++.++++
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344556678899999999999999999999999999999999988866442 2233467889999999999999
Q ss_pred hccccccCCCCC
Q 017193 364 LFPFETKGKRID 375 (375)
Q Consensus 364 ~~~pet~~~~~~ 375 (375)
++.||||||++|
T Consensus 461 ~~~PETkg~tLe 472 (491)
T 4gc0_A 461 KFVPETKGKTLE 472 (491)
T ss_dssp HHCCCCTTCCHH
T ss_pred heecCCCCCCHH
Confidence 999999999875
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=202.53 Aligned_cols=320 Identities=17% Similarity=0.222 Sum_probs=201.9
Q ss_pred hhHHHHHHHHh----hhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017193 2 LASVAGLLSAF----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMP 76 (375)
Q Consensus 2 ~~~i~~~~~~~----~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~ 76 (375)
+.+++.++.++ ++|++.++++|++.|++.|.. +...+++.|++|+++|++..++.+....+|.++++.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888 899999999999999999875 6778999999999999999999999999999999998876666
Q ss_pred CCc-hHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCC
Q 017193 77 RLN-WRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEH 154 (375)
Q Consensus 77 ~~~-WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (375)
..+ ||+.|++.+++.++. ++.++++||+|+....+.+ +|. ..+.+.+.+++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~------ 233 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY--------------------KNDYPDDYNEK------ 233 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT--------------------CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhh--------------------cccccccchhh------
Confidence 677 999999998877665 4556778999975321110 000 00000000000
Q ss_pred CCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHH
Q 017193 155 TPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFI 234 (375)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (375)
+ + ++........+..++++.. +......+...+.+++...+.|.+..+. .+.+.........+
T Consensus 234 ~---~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~ 296 (451)
T 1pw4_A 234 A---E-QELTAKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSSWAYFL 296 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHHHHHHH
T ss_pred h---h-cccccccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHH
Confidence 0 0 0000000012333333222 2222222333334444444444332210 01111112223345
Q ss_pred HHhhhhhHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHHhhcc--chhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017193 235 TSLAELPGLLLSAVIVDRV--GRKISMAIMSILTF-IFLLPLLTHQ--PVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 235 ~~~~~i~g~~~~~~l~d~~--gRr~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
..++.+++.++.+++.||+ |||+.+..+..+.. +..+.+.... +.+......+...++..+..+..+.+..|.+|
T Consensus 297 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (451)
T 1pw4_A 297 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 376 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence 5677788999999999999 99998776665554 3333332221 22222233333333334455666789999999
Q ss_pred ccchhHHHHHHHHHHhH-HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 310 TSLRATGAGIASAVGRI-GGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 310 ~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+.+.+++.+++.++.++.
T Consensus 377 ~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 377 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999888877665556666666666666555544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=183.92 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=183.9
Q ss_pred hHHHHHHH---HhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 017193 3 ASVAGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM-PR 77 (375)
Q Consensus 3 ~~i~~~~~---~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~ 77 (375)
..++.++. ++++|++.++++|++.|++.|.. +...+++.|+.|+|+|++..++.+.+..+|.++++.++..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777 78899999999999999999975 677899999999999999999999999999999999877765 44
Q ss_pred Cc-------------------------hHHHHHHHhHHHHHHHHH--HhcCcCCchhhhhcCChHHHHHHHHHHHHHhCC
Q 017193 78 LN-------------------------WRWLLALSSVPSFAVLLL--YGLAPETPKYLCTAGKMADAAHVLEKMAQRNGT 130 (375)
Q Consensus 78 ~~-------------------------WR~~f~~~~i~~ll~~~~--~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~ 130 (375)
.+ ||+.|.+.+.+.++..+. +...||+++.. +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---------------------~ 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---------------------H 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------------------C
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------------------c
Confidence 43 999998777665554333 22345554310 0
Q ss_pred CCCCCccccCCCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhh-hhh
Q 017193 131 NLPSGMLVSDETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSEL-NSE 209 (375)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (375)
.++++ ++...+++++++.+..+...+..+ .....+++...+.+.+ ..+
T Consensus 240 --------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 240 --------------SDAKQ--------------GSFSASLSRLARIRHWRWAVLAQF---CYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp --------------CCSST--------------TSHHHHHHHHTTCSHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred --------------ccccc--------------cchhhhHHHHHhChHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhc
Confidence 00000 000123445555444333222222 2222233333333332 211
Q ss_pred hhhcccchhhhccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 017193 210 EARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGA 289 (375)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
. .+.+.........+..++.+++.++.+++.||+|||+.+..+.+++.+..+......+... ....+..
T Consensus 289 ~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 357 (438)
T 3o7q_A 289 I----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLC 357 (438)
T ss_dssp S----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_pred c----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 0 0111111222234456677889999999999999999988877766665554444333322 2222333
Q ss_pred HHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHH
Q 017193 290 RMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIV 356 (375)
Q Consensus 290 ~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (375)
.++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+.+++.+
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444455677888889999988 999999877 788999999999988877655 3344444433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=181.75 Aligned_cols=348 Identities=10% Similarity=-0.027 Sum_probs=178.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMLMVVISTFWTLGTIFEAALAWMVMPRLN 79 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 79 (375)
..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++ |+...++.+...++|..+++.++..+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788888999999999999999999975 677899999999999 7778888999999999999999888777789
Q ss_pred hHHHHHHHhHHHHHHHHHHhc-----CcCCchhhhhcCChHHHHHHHHH--------------HHHHhCCCCCCCccccC
Q 017193 80 WRWLLALSSVPSFAVLLLYGL-----APETPKYLCTAGKMADAAHVLEK--------------MAQRNGTNLPSGMLVSD 140 (375)
Q Consensus 80 WR~~f~~~~i~~ll~~~~~~~-----~pESp~~l~~~~~~~ea~~~l~~--------------~~~~~~~~~~~~~~~~~ 140 (375)
||+.|.+.++..++..+...+ .+|.++--..+.+.+|.++..++ ....+..+. ++....
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 252 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--PAYINL 252 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhh
Confidence 999999987666554333221 12111111111233344333332 011110000 000000
Q ss_pred CCCCCCcccCCCCCCCcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhh
Q 017193 141 ETATPDEEVIIPEHTPLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLL 220 (375)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
. .......... ......+++ ......+++.. .....+...+.....+.......+.+..+.. +.
T Consensus 253 ~--~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 316 (491)
T 4aps_A 253 L--TIVAIAIPVF--YFAWMISSV----KVTSTEHLRVV-SYIPLFIAAVLFWAIEEQGSVVLATFAAERV--DS----- 316 (491)
T ss_dssp H--HHHHHHHHHH--HHHHHC----------------CT-THHHHHHHHHHHHHHHGGGGTHHHHHHHHSC--CC-----
T ss_pred h--hHHHHHHHHH--HHHHHhhcc----cccHHHHHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHh--cc-----
Confidence 0 0000000000 000000000 00000000000 0111111111111111111111111111000 00
Q ss_pred ccccchhhHHHHHHHHhhhhhHHHHHHHHHhhhCchHHHH-----HHHHHHHHHHHHHhhc---------cchhHHHHHH
Q 017193 221 EHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMA-----IMSILTFIFLLPLLTH---------QPVTLTTVLL 286 (375)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 286 (375)
....... ......+..+++..+.+++.||+|||+... .+..++.+....+... .+........
T Consensus 317 -~~~~~~~--~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 317 -SWFPVSW--FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW 393 (491)
T ss_dssp -SSSCSGG--GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred -CccCHHH--HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 0001111 112334555667788899999999986533 3333333332222211 1222222222
Q ss_pred HHHHHHhhhhcccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 287 FGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
+..........+..+.+..|.+|++.|+++.|+.+...++++.++|.+.+.+.+. +....+.+++++.+++.+..+++.
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334566788999999999999999999999999999999987755443 344566777777777777777777
Q ss_pred ccccCC
Q 017193 367 FETKGK 372 (375)
Q Consensus 367 pet~~~ 372 (375)
|+++++
T Consensus 473 ~~~~~~ 478 (491)
T 4aps_A 473 KRIQGL 478 (491)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 776653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=165.16 Aligned_cols=272 Identities=14% Similarity=0.098 Sum_probs=164.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVMPRLNWR 81 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~WR 81 (375)
..++.++..+++|++.+++.|++.|++.|.. +....++.|+.|+|+|++..+..+....+|..+++.++..+.+..+||
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 75 FMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 4567778888999999999999999999874 667889999999999999999999999999999999988877777999
Q ss_pred HHHHHHhHHHHHHHH-HHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCCCcccc
Q 017193 82 WLLALSSVPSFAVLL-LYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHTPLLSS 160 (375)
Q Consensus 82 ~~f~~~~i~~ll~~~-~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
+.|.+.++..++..+ ...++||+|+... + + ++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~---------------~~~~----------- 189 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDA---P----------------R---------------TRLL----------- 189 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C----------------C---------------CCTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCc---c----------------c---------------ccHH-----------
Confidence 999998887776654 5567888875210 0 0 0000
Q ss_pred cccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHHHhhhh
Q 017193 161 TVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFITSLAEL 240 (375)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (375)
+++++.++++..+. .....+.....++....+.|.+..+.. +.+............++.+
T Consensus 190 -------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~ 249 (375)
T 2gfp_A 190 -------TSYKTLFGNSGFNC---YLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAF 249 (375)
T ss_dssp -------TCSTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHH
T ss_pred -------HHHHHHhcCcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHH
Confidence 01122333322221 222222223333344344333221100 0011111111223345556
Q ss_pred hHHHHHHHHHhhhCchHHHHHHH-HHHHHHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccccchhHHH
Q 017193 241 PGLLLSAVIVDRVGRKISMAIMS-ILTFIFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGA 317 (375)
Q Consensus 241 ~g~~~~~~l~d~~gRr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R~~~~ 317 (375)
++..+.+++.||.+||....... ............ ..+.+......+...+......+....+..|.+| +.|+++.
T Consensus 250 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~ 328 (375)
T 2gfp_A 250 FGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAG 328 (375)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHH
Confidence 66666777777776632221111 111111001111 1122222222222223333455677888999999 8999999
Q ss_pred HHHHHHHhHHHhHHHHHHHHhhc
Q 017193 318 GIASAVGRIGGMVCPLVSVGLVT 340 (375)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~ 340 (375)
|+.+..+++++.++|.+.+.+.+
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988776654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=155.38 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccch
Q 017193 234 ITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLR 313 (375)
Q Consensus 234 ~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~R 313 (375)
+..+..+++.++.+++.||+|||+.+..+..+..+..+......+.+...+..+..........+..+.+.+|.+|++.|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 44456678899999999999999988776666555443333333322221111111111112223457899999999999
Q ss_pred hHHHHHH-HHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 017193 314 ATGAGIA-SAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGKR 373 (375)
Q Consensus 314 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 373 (375)
+++.++. +..++++++++|.+.+.+.+..+....+.+.+++.+++.+..+++.||++..+
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999996 67778999999999987776555445566667777777777677778877644
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=156.48 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhh-hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHH---HHHHHHHHHHHHHHHHHHhcCC
Q 017193 3 ASVAGLLSAFSL-NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVV---ISTFWTLGTIFEAALAWMVMPR 77 (375)
Q Consensus 3 ~~i~~~~~~~~~-~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~ 77 (375)
..++.++.++++ |++.+++.|++.|++.|.. +...+++.|++|+++|++..+. .+...++|..+++.++..+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456677788888 9999999999999999875 6778999999999999887766 8888999999999887777777
Q ss_pred CchHHHHHHHhHHHHHHHHHHh
Q 017193 78 LNWRWLLALSSVPSFAVLLLYG 99 (375)
Q Consensus 78 ~~WR~~f~~~~i~~ll~~~~~~ 99 (375)
.+||+.|.+.++..++..+...
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998877666544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-11 Score=110.32 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=98.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT----HQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..++..++.++.|.+.||+|||++++.+.++.++..+.... ..+.+...+..+..+++.....+...++.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34556777888999999999999999998887777666555544 44433333333333333334556677899999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhcccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCH-QTAAIFLLAVVIVLSIVCILLFPFETK 370 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 370 (375)
+|++.|+++.++......++..++|.+...+.+..+ ....+++.+++.++..+..+++.||+.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 999999999999999999999999998876655444 334555666666666666656666654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-10 Score=104.00 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 231 NVFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPL---LTHQPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
...+..+...++.++.|.+.||+|||+.++.+.++.++..+.. ....+.+...+.-++.+.......+....+.+|.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 3445566778899999999999999999988877776655544 3333333333333333333334456678899999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhh
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLV 339 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (375)
+|++.|+++.++.+....++..++|.+...+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=104.18 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=92.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDR-VGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~-~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
..+..++..++.++.|+++|| +|||+++..+.++..+..+......+.+...+..+..+.......+...++.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 345566778899999999999 8999999888877766665555444444333333333333334556778899999999
Q ss_pred cc--hhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 017193 311 SL--RATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLF 365 (375)
Q Consensus 311 ~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (375)
+. |+++.++.+....+++.++|.+...+.+..+....+.+.++..+++.+..++.
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 77788878888999999999988877665544445555554454444444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=104.15 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=96.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeecccccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~ 311 (375)
..+..+...++.+..|++.||+|||+.+..+.++..+..+......+.+......+..........+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 34555667788899999999999999988777766665554443333333223333333333334566778999999999
Q ss_pred chhHHHHHHHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017193 312 LRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 312 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
.|+++.++.+....++..++|.+...+.+..+....+.+.++..++..+..++..||++.+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999887666544333445555555555555455667787543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-09 Score=101.69 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=88.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHhhhhcccceeecccccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRV-GRKISMAIMSILTFIFLLPLLTHQ-PVTLTTVLLFGARMFANGTFAVACVYAPEVYP 309 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P 309 (375)
..+..++..++.++.|++.||+ |||+++..+.++..+..+...... +.+...+..+..........+...++.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445566778899999999999 999998887776666555544443 33333333333333333445677889999999
Q ss_pred ccchhHHHHH---HHHHHhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 017193 310 TSLRATGAGI---ASAVGRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILL 364 (375)
Q Consensus 310 ~~~R~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
++.|+++.+. .+....+++.++|.+...+.+..+....+.+.+++.+++.+..++
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876666 888888999999988776665544444455555555554444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=89.10 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=82.6
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhh------------------ccchhHHHHHHHHHHHHhhhhc
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLT------------------HQPVTLTTVLLFGARMFANGTF 297 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
.++.++|.++.|++.||+|||++++.+.++..+..+.... ..+.....+.=++.++...+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999998877666554443321 1122222222233344444556
Q ss_pred ccceeeccccccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHhccccc
Q 017193 298 AVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTG-------CHQTAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 298 ~~~~~~~~El~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+...+|.+|..|++.|++..++......++...++.+....... ...+...+.......+..+...++.||+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 77889999999999999999988877777666665544332221 1122222333333333444455567886
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.5e-05 Score=71.70 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=73.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 017193 9 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVV-ISTFWTLGTIFEAALAWMVMPRLNWRWLLAL 86 (375)
Q Consensus 9 ~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~WR~~f~~ 86 (375)
+.++.++.+.+++..++.|++.+.. +....+..|..|++.||+..++ ++....+|..+++.++..+.+..+|+..|.+
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 3344567777888888888776543 4456789999999999998888 4777889998888887766666789999988
Q ss_pred HhHHHHHHHH-HHhcCcCCchh
Q 017193 87 SSVPSFAVLL-LYGLAPETPKY 107 (375)
Q Consensus 87 ~~i~~ll~~~-~~~~~pESp~~ 107 (375)
.++..++..+ .....||.++-
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 385 LGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHHHhhhcCCCch
Confidence 8777766644 34456765543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 375 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 46.2 bits (108), Expect = 4e-06
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 252 RVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTS 311
G + + + + T+ + + G + ++A E+ P
Sbjct: 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375
Query: 312 LRATGAGIASAVGRIGGMVC-PLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETK 370
T AG G +GG V + V ++ +L+++ +++ K
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
Query: 371 GKR 373
+
Sbjct: 436 RRH 438
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 375 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.67 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.16 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.26 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1e-22 Score=190.04 Aligned_cols=320 Identities=17% Similarity=0.181 Sum_probs=185.2
Q ss_pred hHHHHHHHHhhh----hHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 017193 3 ASVAGLLSAFSL----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVISTFWTLGTIFEAALAWMVM-P 76 (375)
Q Consensus 3 ~~i~~~~~~~~~----~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~ 76 (375)
.+++.+++++++ +++.+++.|++.|++.|.. +....++.|+.|+|+|++..++.+.+..+|.++++.++.... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 178 (447)
T d1pw4a_ 99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178 (447)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence 345556666654 7778999999999999875 667889999999999999999999999999999887765543 3
Q ss_pred CCchHHHHHHHhHHHHHH-HHHHhcCcCCchhhhhcCChHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCcccCCCCCC
Q 017193 77 RLNWRWLLALSSVPSFAV-LLLYGLAPETPKYLCTAGKMADAAHVLEKMAQRNGTNLPSGMLVSDETATPDEEVIIPEHT 155 (375)
Q Consensus 77 ~~~WR~~f~~~~i~~ll~-~~~~~~~pESp~~l~~~~~~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (375)
..+||+.|.+.+++.++. ++.+.+.+|+|+....... +|. ..+ +.++..+..
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------~~~---~~~~~~~~~--- 231 (447)
T d1pw4a_ 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY--------------------KND---YPDDYNEKA--- 231 (447)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT--------------------CCC---------------
T ss_pred hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hhh--------------------hhh---cccchhhcc---
Confidence 568999999888777665 4556667888764211100 000 000 000000000
Q ss_pred CcccccccccchhhhHHhhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhhhhhhhhhcccchhhhccccchhhHHHHHHH
Q 017193 156 PLLSSTVNKSGSSSFLMLLSTELIRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLLLEHAQDASLYVNVFIT 235 (375)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (375)
+ ++........+..++.+. ........+......++...+.+.+..+. ...+.........+.
T Consensus 232 ---~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 232 ---E-QELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSSWAYFLY 294 (447)
T ss_dssp --------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHHHHHHHH
T ss_pred ---c-cccchhhHHHHHHHcCch---HHHHHHHhhhhhhhhhcchhhhhhhcccc----------cccccchhhhhhhcc
Confidence 0 000001111222232221 11222222223333344444433322110 011111222333455
Q ss_pred HhhhhhHHHHHHHHHhhhCchHHHHHHHHHHH---HHHHHHhh--ccchhHHHHHHHHHHHHhhhhcccceeeccccccc
Q 017193 236 SLAELPGLLLSAVIVDRVGRKISMAIMSILTF---IFLLPLLT--HQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPT 310 (375)
Q Consensus 236 ~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~ 310 (375)
.+..+++.++.+++.||.+||........... ........ ..+.+...+..+...+...+..+..+.+..|.+|+
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 374 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 67778899999999999998754332222221 11111111 12223333333334444445566778899999999
Q ss_pred cchhHHHHHHHHHHhHHH-hHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 017193 311 SLRATGAGIASAVGRIGG-MVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFP 366 (375)
Q Consensus 311 ~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (375)
+.|+++.|+.+.++++++ +.+|.+.+.+.+..+....+++++++.+++.++.+++.
T Consensus 375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999855 56788888777776655666666666666655555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=3.4e-15 Score=135.94 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=101.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhcccceeeccccccccc
Q 017193 233 FITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSL 312 (375)
Q Consensus 233 ~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~P~~~ 312 (375)
....+...++..+.+++.||.|||+.+..+.++..+..+......+.+...+..+...+......+....+.+|.+|++.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (417)
T d1pv7a_ 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH
Confidence 34456667788889999999999999988877777666655555444433333333333333455677889999999999
Q ss_pred hhHHHHHHHHH-HhHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccccccCC
Q 017193 313 RATGAGIASAV-GRIGGMVCPLVSVGLVTGCHQTAAIFLLAVVIVLSIVCILLFPFETKGK 372 (375)
Q Consensus 313 R~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 372 (375)
|+++.|+...+ ..+++.++|.+.+.+.+..+....+++++++.++..++..++.++++..
T Consensus 346 ~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999987655 5688999999998888877766677777877777777766666555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5.9e-10 Score=102.29 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=92.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHhhhhcccceeecccc
Q 017193 232 VFITSLAELPGLLLSAVIVDRVGRKISMAIMSILTFIFLLPLLTH----QPVTLTTVLLFGARMFANGTFAVACVYAPEV 307 (375)
Q Consensus 232 ~~~~~~~~i~g~~~~~~l~d~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 307 (375)
..+..++..++.++.|.++||+|||+++..+.++..+..+..... ++.....+.-+....+.....+....+.+|.
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 144 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345567778899999999999999999988877766654443321 2222222333333333334456677899999
Q ss_pred ccccchhHHHHHHHHHHhHHHhHHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHhccccc
Q 017193 308 YPTSLRATGAGIASAVGRIGGMVCPLVSVGLVTGCHQ-TAAIFLLAVVIVLSIVCILLFPFET 369 (375)
Q Consensus 308 ~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet 369 (375)
+|++.|+++.++.+....+++.++|.+........+. ...+++.+.+..+..+..+++.+|+
T Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 9999999999999999999999988876654443322 2334455555555555655555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=5.8e-07 Score=80.16 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=80.6
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhcCCCc-hhHHHHHhhhcCCCchhhHHHHH-HHHHHHHHHHHHHHHHHhcCCCch
Q 017193 3 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMLMVVI-STFWTLGTIFEAALAWMVMPRLNW 80 (375)
Q Consensus 3 ~~i~~~~~~~~~~~~~l~~~R~i~G~~~G~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~W 80 (375)
..++.++..+.+|.+.+++.-++.|++.|.. +....++.|.+|++.||+..+.. +....+|..+++.+...+.+..||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 3455566677789999999999999999874 66778999999999999999875 566789999999888777778899
Q ss_pred HHHHHHHhHHHHHHHH-HHhcCcCC
Q 017193 81 RWLLALSSVPSFAVLL-LYGLAPET 104 (375)
Q Consensus 81 R~~f~~~~i~~ll~~~-~~~~~pES 104 (375)
+..|.+.++..++..+ ..+.+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 379 QGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999888777666544 34444443
|