BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017194
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
RLRGH+ + + G++ S+ +D IC +D+ R D + + V
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + + E+N + NP S F LA
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H VQ+ P + S G D +L +WD SK
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 314
Query: 326 Q 326
+
Sbjct: 315 K 315
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
RLRGH+ + + G++ S+ +D IC +D+ R D + + V
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + + E+N + NP S F LA
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H VQ+ P + S G D +L +WD SK
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 310
Query: 326 Q 326
+
Sbjct: 311 K 311
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
RLRGH+ + + G++ S+ +D IC +D+ R D + + V
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + + E+N + NP S F LA
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H VQ+ P + S G D +L +WD SK
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D ++V HTA +C++F+ + E L +G DK V +WD
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 312
Query: 326 Q 326
+
Sbjct: 313 K 313
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-------RSKDVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D IC +D+ + D + + V
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P S + + E+N + NP S F LA
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H VQ+ P + S G D +L +WD SK
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D +SV HTA +C++F+ + E L +G DK V +WD
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 306
Query: 326 Q 326
+
Sbjct: 307 K 307
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D +C +D+ + D + + + V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + E+N + NP S F LA
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H V + P + S G D +L +WD SK
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 326 Q 326
+
Sbjct: 309 K 309
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVT 62
RLRGH+ + + G + S+ +D +C +D+ + D + + + V
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 63 SLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LAC 120
+ + +E + V+ +++ +D + +P + + E+N + NP S F LA
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSK 178
V + D+R L H V + P + S G D +L +WD SK
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 325
D ++ I D + V HTA +C++F+ + E L +G DK V +WD
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF--ILATGSADKTVALWDLRNL 308
Query: 326 Q 326
+
Sbjct: 309 K 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 117
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 158
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 219 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 59
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 60 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 104
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 105 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 158
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKT 182
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 112
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 162
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 163 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 221
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 127
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 168
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 229 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 68
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 69 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 122
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 172
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 231
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 127
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 168
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 229 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 69
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 70 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 122
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 172
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 231
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 122
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 163
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 224 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 51
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 64
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 65 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 109
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 163
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKT 187
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 117
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 167
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 168 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 226
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 120
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 161
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 222 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 49
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 62
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 63 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 107
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 108 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 161
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKT 185
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 115
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 165
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 166 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 224
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 121
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 162
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 223 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 63
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 64 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 162
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKT 186
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 116
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 166
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 225
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 121
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 162
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 223 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 50
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 31/212 (14%)
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183
G K ++ + K AGH+ SSV+F P W + S D + +W G+ K
Sbjct: 1 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK 59
Query: 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243
++ H + I D +N + V A D + + ++ S +
Sbjct: 60 TISG------------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCL 100
Query: 244 SRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 298
K + + + N+ D + I D GK L ++ H+ S V
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV-- 155
Query: 299 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
F G ++S D L ++WD + Q ++T
Sbjct: 156 -HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 116
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 166
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 126
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 167
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 228 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 55
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 68
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 69 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 113
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 167
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKT 191
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 121
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 171
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 172 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 230
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 138
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 179
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 240 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 67
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183
G K ++ + K AGH+ SSV+F P W + S D + +W G+ K
Sbjct: 18 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK 76
Query: 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243
++ H + I D +N + V A D + + ++ S +
Sbjct: 77 TIS------------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCL 117
Query: 244 SRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 298
K + + + N+ D + I D GK L ++ H+ S V F
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHF 174
Query: 299 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
+ G ++S D L ++WD + Q ++T
Sbjct: 175 N---RDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 133
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 183
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 184 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 242
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 127
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 168
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 229 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 56
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 69
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 70 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 168
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 122
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 172
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 231
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 143
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 184
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 245 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 295
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 72
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 85
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 86 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 184
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKT 208
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 138
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 188
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 247
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 124
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 165
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 226 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L + DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLAASSADKLIKIW 53
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTIS----- 65
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135
V +GK +K+ +PA P+ + ++N++ S + + G +I D
Sbjct: 139 VKTGKCLKT----LPAHSDPVSAVHFNRD----------GSLIVSSSYDGLCRIWDTASG 184
Query: 136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 228
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 124
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 165
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 226 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135
V +GK +K+ +PA P+ + ++N++ S + + G +I D
Sbjct: 139 VKTGKCLKT----LPAHSDPVSAVHFNRD----------GSLIVSSSYDGLCRIWDTASG 184
Query: 136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 228
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 124
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 165
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 226 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTIS----- 65
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 66 -------------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 111
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F+ G
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN---RDGS 165
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135
V +GK +K+ +PA P+ + ++N++ S + + G +I D
Sbjct: 139 VKTGKCLKT----LPAHSDPVSAVHFNRD----------GSLIVSSSYDGLCRIWDTASG 184
Query: 136 CLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 228
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 145
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G+ K + PA ++ A ++
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTL----------------PAHSDPVS---AVHFNRDGS 186
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D LV +W+ + VQ
Sbjct: 247 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 297
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 74
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPE 191
++ + K AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG---- 87
Query: 192 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 251
H + I D +N + V A D + + ++ S + K +
Sbjct: 88 --------------HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 252 PLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 306
+ + N+ D + I D GK L ++ H+ S V F G
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAV---HFNRDGS 186
Query: 307 YLISGGNDKLVKVWDCSRFQGVQT 330
++S D L ++WD + Q ++T
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKT 210
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 140
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD----------GSLIVS 190
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 249
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 124
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G C H+ + A ++
Sbjct: 125 IVSGSFDESVRIWDV------------------KTGMCLKTLPAHSDPV-SAVHFNRDGS 165
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D ++++ D S
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D +V +W+ + VQ
Sbjct: 226 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 119
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD----------GSLIVS 169
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNDLKLWDYSKGK 228
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 23 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG--------------- 66
Query: 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 262
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 67 ---HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 263 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 317
N+ D + I D G L ++ H+ S V F G ++S D L
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAV---HFNRDGSLIVSSSYDGLC 176
Query: 318 KVWDCSRFQGVQT 330
++WD + Q ++T
Sbjct: 177 RIWDTASGQCLKT 189
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 52/320 (16%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFK 67
RRL GH + S D F S DG + +DL + V VG+ V S+ F
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFS 481
Query: 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGG 125
N I+ S + +K ++ + E +++ ++ + +P + + A
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIV 185
VK+ ++ +C +S AGH+ S+V P SGG D +++WD ++G+ K+
Sbjct: 542 TVKVWNL-SNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGK--KL- 596
Query: 186 NFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 245
+ L N+ C++P N+ + A + + + ++E
Sbjct: 597 -YSLEANSVIHALCFSP-----------------NRYWLCAATEHGIKIWDLE------- 631
Query: 246 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 305
SKS + L KV+++ AE E D SG C + + + G
Sbjct: 632 SKSIVEDL-------KVDLK-AEAEKADNSG--------PAATKRKVIYCTSLN-WSADG 674
Query: 306 KYLISGGNDKLVKVWDCSRF 325
L SG D +++VW R+
Sbjct: 675 STLFSGYTDGVIRVWGIGRY 694
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+K I+ + + S+ L A D +KI D+ K+L+ GHS+ F P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP-QSNL 124
Query: 162 VISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 221
++SG D + +WD G C H+ + A ++
Sbjct: 125 IVSGSFDESVRIWDV------------------KTGMCLKTLPAHSDPV-SAVHFNRDGS 165
Query: 222 ICVVAKGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKV--NIRDAEMEILDQS 275
+ V + DG+ + + S + P +K S + + D +++ D S
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Query: 276 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GK L + GH C+ + GK+++SG D +V +W+ + VQ
Sbjct: 226 KGKCLK---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 282 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 320
L +++ GHT A S V FS GE +L S DKL+K+W
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 296 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 330
V+F F GKY+++ D +K+WD S+ + ++T
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC-FK 67
+ + GHK + S D V++S + W D+ S L T G+ C F
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSGKC-LKTLKGHSNYVFCCNFN 119
Query: 68 SGNEDIIYVSSGKEVKSFDVH-------MPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
+ I+ S + V+ +DV +PA P+ + ++N++ S +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD----------GSLIVS 169
Query: 121 ADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
+ G +I D K+L + S V+F P + +++ LD+ L +WD+SKG+
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGK 228
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 143 AGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
AGH+ SSV+F P W + S D + +W G+ K ++
Sbjct: 23 AGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISG--------------- 66
Query: 203 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 262
H + I D +N + V A D + + ++ S + K + + +
Sbjct: 67 ---HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 263 NI-----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 317
N+ D + I D G L ++ H+ S V F G ++S D L
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLK---TLPAHSDPVSAV---HFNRDGSLIVSSSYDGLC 176
Query: 318 KVWDCSRFQGVQT 330
++WD + Q ++T
Sbjct: 177 RIWDTASGQCLKT 189
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R LRGH + + S D F S DG + +DL + V S+ F S
Sbjct: 80 RALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY------NKEEINQIVCNPKSSFLACAD 122
N I+ S K +K W L Y + E ++ + +P SS
Sbjct: 139 DNRQIVSGSRDKTIKL--------WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 123 DGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
G D VK+ ++ +C K+ GH+ ++V P SGG D + ++WD ++G+
Sbjct: 191 CGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 248
Query: 181 PNKIVNFGLPENNGNAGQCYNP--AFVHAIAIPDADMLDKTNKICV 224
++ G N C++P ++ A P + D KI V
Sbjct: 249 HLYTLDGGDIIN----ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 31/200 (15%)
Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 192
Q L +L+ GH+ + + P P ++S D ++MW ++ N+G+P+
Sbjct: 26 EQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE----TNYGIPQR 80
Query: 193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252
H+ + D ++ + + DG + + ++ + R TK
Sbjct: 81 ALRG---------HSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Query: 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---------GHTAAASCVAFSMFGE 303
+ V +I+ S K + L ++G H+ SCV FS
Sbjct: 131 VL------SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-NS 183
Query: 304 RGKYLISGGNDKLVKVWDCS 323
++S G DKLVKVW+ +
Sbjct: 184 SNPIIVSCGWDKLVKVWNLA 203
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 25/226 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R LRGH + + S D F S DG + +DL + V S+ F S
Sbjct: 57 RALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY------NKEEINQIVCNPKSSFLACAD 122
N I+ S K +K W L Y + E ++ + +P SS
Sbjct: 116 DNRQIVSGSRDKTIKL--------WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 123 DGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGR 180
G D VK+ ++ +C K+ GH+ ++V P SGG D + ++WD ++G+
Sbjct: 168 CGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 225
Query: 181 PNKIVNFGLPENNGNAGQCYNP--AFVHAIAIPDADMLDKTNKICV 224
++ G N C++P ++ A P + D KI V
Sbjct: 226 HLYTLDGGDIIN----ALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 31/200 (15%)
Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPEN 192
Q L +L+ GH+ + + P P ++S D ++MW ++ N+G+P+
Sbjct: 3 EQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE----TNYGIPQR 57
Query: 193 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 252
H+ + D ++ + + DG + + ++ + R TK
Sbjct: 58 ALRG---------HSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 107
Query: 253 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG---------GHTAAASCVAFSMFGE 303
+ V +I+ S K + L ++G H+ SCV FS
Sbjct: 108 VL------SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-NS 160
Query: 304 RGKYLISGGNDKLVKVWDCS 323
++S G DKLVKVW+ +
Sbjct: 161 SNPIIVSCGWDKLVKVWNLA 180
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 138 YKSLRAGHSSICSSVQ--FIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGN 195
Y+ GH +S+ P +V+S D L+ W + R + ++GLP+
Sbjct: 5 YEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE 64
Query: 196 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLK 254
+ AFV +A L V A D + + N+++ + T L
Sbjct: 65 G----HSAFVSDVA------LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLS 114
Query: 255 GSQSTSKVNI----RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 310
+ S I RD + + + G + +H S G HT SCV FS + ++S
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG-ECMHT-LSRGAHTDWVSCVRFSPSLD-APVIVS 171
Query: 311 GGNDKLVKVWDCS 323
GG D LVKVWD +
Sbjct: 172 GGWDNLVKVWDLA 184
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161
+ +++ + +P + + +++ +++ C++ R H+ S V+F P
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAP 167
Query: 162 VI-SGGLDSKLVMWDFSKGR 180
VI SGG D+ + +WD + GR
Sbjct: 168 VIVSGGWDNLVKVWDLATGR 187
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 31 VASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89
+ + GEDG I F K+ V+ + + + + ++ F E I+ V+S ++K +D
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPE-ILTVNSIGQLKIWDFRQ 221
Query: 90 PASWRPLE--SYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146
+ P + S ++ ++ + +P + +A G + I D+RQ + SL H
Sbjct: 222 QGN-EPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHE 280
Query: 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183
+ V F P P + + D L WD S P K
Sbjct: 281 AEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEK 317
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 80/246 (32%), Gaps = 70/246 (28%)
Query: 96 LESYNYNKEE-----------INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG 144
+ +NYN E I I +P ++ D VK+ + + + G
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 204
H V F P P SG LD + +W + P NF L GQ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVNY 189
Query: 205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 264
V +PD + + A D + + + + +KS L+G S
Sbjct: 190 VDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN----- 230
Query: 265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324
V+F++F +ISG D +K+W+ S
Sbjct: 231 -------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 325 FQGVQT 330
++ +T
Sbjct: 260 YKVEKT 265
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172
P ++ A D +KI D + +L GH S S F P P +ISG D L
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-IIISGSEDGTLK 253
Query: 173 MWDFSKGRPNKIVNFGL 189
+W+ S + K +N GL
Sbjct: 254 IWNSSTYKVEKTLNVGL 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 80/246 (32%), Gaps = 70/246 (28%)
Query: 96 LESYNYNKEE-----------INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG 144
+ +NYN E I I +P ++ D VK+ + + + G
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 145 HSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAF 204
H V F P P SG LD + +W + P NF L GQ +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVNY 189
Query: 205 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 264
V +PD + + A D + + + + +KS L+G S
Sbjct: 190 VDYYPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN----- 230
Query: 265 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 324
V+F++F +ISG D +K+W+ S
Sbjct: 231 -------------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Query: 325 FQGVQT 330
++ +T
Sbjct: 260 YKVEKT 265
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172
P ++ A D +KI D + +L GH S S F P P +ISG D L
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-IIISGSEDGTLK 253
Query: 173 MWDFSKGRPNKIVNFGL 189
+W+ S + K +N GL
Sbjct: 254 IWNSSTYKVEKTLNVGL 270
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 50 VQLVTDVGNGPVTSLCF-----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN---- 100
+ + D P SLC ++G D+ +VS + + D W LE +
Sbjct: 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN 131
Query: 101 -YNKEEINQIV--CNPKSSFLACADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFI 155
+ K E + IV + S G D VK+ D+ Q + KS A HSS + V
Sbjct: 132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAAC 190
Query: 156 PWKPWEVISGGLDSKLVMWDFSKGRPNKIVNF 187
P K +S G D ++++WD K +P ++F
Sbjct: 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 9 RRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLV-TDVGNG---PVTS 63
R L GHK A+ C D+ + SG+ C+ W + + + ++ +G V S
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 64 LCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122
L S N ++ I S V+ +D+ + + R + +Y+ ++ +IN + P
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 123 DGGDVKIIDIR 133
D G ++ D+R
Sbjct: 269 DDGTCRLFDMR 279
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENN 193
GH SS Q++P + +I+G D V+WD + G+ I P +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 39/194 (20%)
Query: 144 GHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPA 203
GHS S+ + P K W ++S D +L++W+ L +A + + P
Sbjct: 64 GHSGKVYSLDWTPEKNW-IVSASQDGRLIVWN------------ALTSQKTHAIKLHCPW 110
Query: 204 FVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQ--STS 260
+ P N V G D + N+ S+ + + ++ L G + ++S
Sbjct: 111 VMECAFAP--------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS 162
Query: 261 KVNIRDAEMEILDQSGGKRLHL-DYSVG------------GHTAAASCVAFSMFGERGKY 307
+ D E ++ SG + L D + G GHTA ++ S+
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--DVLSLSINSLNANM 220
Query: 308 LISGGNDKLVKVWD 321
ISG D V++WD
Sbjct: 221 FISGSCDTTVRLWD 234
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 106/279 (37%), Gaps = 39/279 (13%)
Query: 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA 119
PVT + F ++ S +K +D R L+ + + + I + LA
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLA 166
Query: 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG 179
+K+ D + +++ GH SSV +P ++S D + MW+ G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTG 224
Query: 180 RPNKI-------VNFGLPENNGNA-GQCYNPAFVHAIAIP----DADMLDKTNKI-CVVA 226
K V P +G C N V + A++ + + + C+
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 227 KGDGVVDVINIESELNISRSKSTTKP----LKGSQSTSKVNIRDAEMEILDQSGGKRLHL 282
+ I SE S +K + KP L GS RD +++ D S G L
Sbjct: 285 APESSYSSI---SEATGSETKKSGKPGPFLLSGS--------RDKTIKMWDVSTGMCL-- 331
Query: 283 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 321
++ GH V +F GK+++S +DK ++VWD
Sbjct: 332 -MTLVGHDNWVRGV---LFHSGGKFILSCADDKTLRVWD 366
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 302 GERGKYLISGGNDKLVKVWDCS 323
G+ G +L+SG DK +K+WD S
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVS 326
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
Query: 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89
++A+ G + F + S + D + S+ + + D Y++SG ++
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY---SPDGKYLASGAIDGIINIFD 192
Query: 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149
A+ + L + + I + +P S L A D G +KI D+ QH +GH+S
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-QHANLAGTLSGHASWV 251
Query: 150 SSVQFIP 156
+V F P
Sbjct: 252 LNVAFCP 258
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 126 DVKIIDIRQHCLYKSLRAGH--SSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNK 183
D++ I+ C SL+ H S V + + +++SG D+ + +WD + +
Sbjct: 108 DIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR 167
Query: 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN-IESELN 242
I+ G+ G + + I + D T ++ V G+ + +I+ E+ L+
Sbjct: 168 ILT-------GHTGSVLCLQYDERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLH 218
Query: 243 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 302
L+ + +D + + D + + L + GH AA + V F
Sbjct: 219 ----------LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 265
Query: 303 ERGKYLISGGNDKLVKVWDCSRFQGVQT 330
KY++S D+ +KVW+ S + V+T
Sbjct: 266 --DKYIVSASGDRTIKVWNTSTCEFVRT 291
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 42/211 (19%)
Query: 139 KSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRP-NKIVN-----FGLPEN 192
K + GH+ SV + + +I+G DS + +WD + G N +++ L N
Sbjct: 166 KRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222
Query: 193 NGNAGQCYNPAFVHAIAIPD-------------------ADMLDKTNKICVVAKGDGVVD 233
NG C +IA+ D +++D +K V A GD +
Sbjct: 223 NGMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 279
Query: 234 VINIESELNISRSKSTTKPLKGSQSTSKVNIR---DAEMEILDQSGGKRLHLDYSVGGHT 290
V N + + + + Q ++ + D + + D G L + + GH
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV---LEGHE 336
Query: 291 AAASCVAFSMFGERGKYLISGGNDKLVKVWD 321
C+ F K ++SG D +KVWD
Sbjct: 337 ELVRCIRFD-----NKRIVSGAYDGKIKVWD 362
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 70/243 (28%)
Query: 99 YNYNKEE-----------INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147
+NYN E I I +P ++ D VK+ + + + GH
Sbjct: 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 207
V F P P SG LD + +W + P NF L GQ +V
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVNYVDY 192
Query: 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267
+PD + + A D + + + + +KS L+G S
Sbjct: 193 YPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN-------- 230
Query: 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327
V+F++F +ISG D +K+W+ S ++
Sbjct: 231 ----------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 328 VQT 330
+T
Sbjct: 263 EKT 265
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172
P ++ A D +KI D + +L GH S S F P P +ISG D L
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-IIISGSEDGTLK 253
Query: 173 MWDFSKGRPNKIVNFGL 189
+W+ S + K +N GL
Sbjct: 254 IWNSSTYKVEKTLNVGL 270
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLV 172
P ++ A D +KI D + +L GH S S F P P +ISG D L
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-IIISGSEDGTLK 253
Query: 173 MWDFSKGRPNKIVNFGL 189
+W+ S + K +N GL
Sbjct: 254 IWNSSTYKVEKTLNVGL 270
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 70/243 (28%)
Query: 99 YNYNKEE-----------INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147
+NYN E I I +P ++ D VK+ + + + GH
Sbjct: 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNPAFVHA 207
V F P P SG LD + +W + P NF L GQ +V
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTL-----TTGQERGVNYVDY 192
Query: 208 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 267
+PD + + A D + + + + +KS L+G S
Sbjct: 193 YPLPDKPYM-------ITASDDLTIKIWDYQ-------TKSCVATLEGHMSN-------- 230
Query: 268 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 327
V+F++F +ISG D +K+W+ S ++
Sbjct: 231 ----------------------------VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 328 VQT 330
+T
Sbjct: 263 EKT 265
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 33/208 (15%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
+ L GH + S++ F SS D + +DLR+ V S+ F
Sbjct: 70 KALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-----------EEINQIVCNPKSSF 117
N I+ + +E+K +++ + E N++ + N++ P + +
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV--QPFAPY 186
Query: 118 LACADDGGDVKI----IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173
A G +K+ IR H SI + ++I +GG D KL++
Sbjct: 187 FASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIA-------TGGKDKKLLI 239
Query: 174 WDFSKGRPNKIVNFGLPENNGNAGQCYN 201
WD I+N P+ +AG N
Sbjct: 240 WD--------ILNLTYPQREFDAGSTIN 259
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 148 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 205
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 129 IIDIR 133
+ D+R
Sbjct: 263 LFDLR 267
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L GH +CC D V SSG+ C W D+ + G V SL
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW-DIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ + K +DV +++ ++ +IN I P + A D +
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 129 IIDIR 133
+ D+R
Sbjct: 252 LFDLR 256
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
+AS G D + F + + L V F S + I S+ K+VK +D
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 693
Query: 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD--VKIIDIRQ-HCLYKSLRAGHSS 147
A+ + + +Y+ + E++N KS+ L A D +K+ D+ Q C ++ GH++
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTN 751
Query: 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186
+ +F P + S D L +WD K +N
Sbjct: 752 SVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSIN 789
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCS 323
D +++I D + GK +H + H+ +C F+ + +L+ +G ND +K+WD +
Sbjct: 685 DKKVKIWDSATGKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLN 738
Query: 324 R 324
+
Sbjct: 739 Q 739
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
+AS G D + F + + L V F S + I S+ K+VK +D
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD---S 686
Query: 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD--VKIIDIRQ-HCLYKSLRAGHSS 147
A+ + + +Y+ + E++N KS+ L A D +K+ D+ Q C ++ GH++
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTN 744
Query: 148 ICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVN 186
+ +F P + S D L +WD K +N
Sbjct: 745 SVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSIN 782
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 266 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI--SGGNDKLVKVWDCS 323
D +++I D + GK +H + H+ +C F+ + +L+ +G ND +K+WD +
Sbjct: 678 DKKVKIWDSATGKLVH---TYDEHSEQVNCCHFT---NKSNHLLLATGSNDFFLKLWDLN 731
Query: 324 R 324
+
Sbjct: 732 Q 732
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 225 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---QSGGKRLH 281
V G+G+VD+ ++ES+ + + + G Q+ +V +L +SG H
Sbjct: 151 VGLGNGLVDIYDVESQTKL-------RTMAGHQA--RVGCLSWNRHVLSSGSRSGAIHHH 201
Query: 282 ----LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 322
++ +G +S V + G L SGGND +V++WD
Sbjct: 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 10/176 (5%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
V S G D + F ++ K + G +T L F N + Y SS +
Sbjct: 138 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 197
Query: 91 ASWRPLESYNYNKEEINQIVCN----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146
R S + IN C+ S + D+ G+V ++++ L+ +LR H
Sbjct: 198 NILRVFAS----SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW-NLRM-HK 251
Query: 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
+ V P W + + +D + +WD + R + LP + C++P
Sbjct: 252 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 307
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 10/176 (5%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
V S G D + F ++ K + G +T L F N + Y SS +
Sbjct: 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196
Query: 91 ASWRPLESYNYNKEEINQIVCN----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146
R S + IN C+ S + D+ G+V ++++ L+ +LR H
Sbjct: 197 NILRVFAS----SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW-NLRM-HK 250
Query: 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
+ V P W + + +D + +WD + R + LP + C++P
Sbjct: 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 10/176 (5%)
Query: 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90
V S G D + F ++ K + G +T L F N + Y SS +
Sbjct: 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196
Query: 91 ASWRPLESYNYNKEEINQIVCN----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146
R S + IN C+ S + D+ G+V ++++ L+ +LR H
Sbjct: 197 NILRVFAS----SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW-NLRM-HK 250
Query: 147 SICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNGNAGQCYNP 202
+ V P W + + +D + +WD + R + LP + C++P
Sbjct: 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 58 NGPVTSLCF----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-- 111
N P+ + F K G+ + V ++ H R L+SY + N C
Sbjct: 54 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 113
Query: 112 ----NPKSSFLACADDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166
N LA A G ++II+ I C+ + GH + + ++F P P ++S
Sbjct: 114 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVS 171
Query: 167 LDSKLVMWDF 176
D L +W+
Sbjct: 172 KDHALRLWNI 181
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 40/199 (20%)
Query: 135 HCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKGRPNKIVNFGLPENNG 194
H LY GH+S +V+ + V+SG D+ L +WD
Sbjct: 193 HTLY-----GHTS---TVRCMHLHEKRVVSGSRDATLRVWDIE----------------- 227
Query: 195 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 254
GQC + H A+ + + V D +V V + E+E + + T +
Sbjct: 228 -TGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 255 GSQSTSKVNIR---DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 311
Q + D + + D G +H ++ GH + S + + L+SG
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMEL-----KDNILVSG 335
Query: 312 GNDKLVKVWDCSRFQGVQT 330
D VK+WD Q +QT
Sbjct: 336 NADSTVKIWDIKTGQCLQT 354
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 2 TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV 61
TD+ +K RGH + + S D F+ SS + W +K V N V
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW---ETKKV-----CKNSAV 926
Query: 62 TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN-----QIVC---NP 113
D+++ + V + D H+ R L+ N +I+ Q+ C +P
Sbjct: 927 ----MLKQEVDVVFQENEVMVLAVD-HI----RRLQLINGRTGQIDYLTEAQVSCCCLSP 977
Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173
++A D+ G ++I+++ + +++S R H +QF + +IS D+++ +
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQS-RFQHKKTVWHIQFTADEK-TLISSSDDAEIQV 1035
Query: 174 WD-------FSKGRPNKIVNFGLPENN 193
W+ F +G + +F L +N+
Sbjct: 1036 WNWQLDKCIFLRGHQETVKDFRLLKNS 1062
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 58 NGPVTSLCF----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-- 111
N P+ + F K G+ + V ++ H R L+SY + N C
Sbjct: 13 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 72
Query: 112 ----NPKSSFLACADDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166
N LA A G ++II+ I C+ + GH + + ++F P P ++S
Sbjct: 73 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVS 130
Query: 167 LDSKLVMWD 175
D L +W+
Sbjct: 131 KDHALRLWN 139
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 58 NGPVTSLCF----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-- 111
N P+ + F K G+ + V ++ H R L+SY + N C
Sbjct: 17 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 76
Query: 112 ----NPKSSFLACADDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166
N LA A G ++II+ I C+ + GH + + ++F P P ++S
Sbjct: 77 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVS 134
Query: 167 LDSKLVMWD 175
D L +W+
Sbjct: 135 KDHALRLWN 143
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 58 NGPVTSLCF----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-- 111
N P+ + F K G+ + V ++ H R L+SY + N C
Sbjct: 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 77
Query: 112 ----NPKSSFLACADDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166
N LA A G ++II+ I C+ + GH + + ++F P P ++S
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVS 135
Query: 167 LDSKLVMWD 175
D L +W+
Sbjct: 136 KDHALRLWN 144
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 13/129 (10%)
Query: 58 NGPVTSLCF----KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-- 111
N P+ + F K G+ + V ++ H R L+SY + N C
Sbjct: 17 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 76
Query: 112 ----NPKSSFLACADDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGG 166
N LA A G ++II+ I C+ + GH + + ++F P P ++S
Sbjct: 77 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVS 134
Query: 167 LDSKLVMWD 175
D L +W+
Sbjct: 135 KDHALRLWN 143
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK+VK W+ ++FQ
Sbjct: 169 IISAGNDKMVKAWNLNQFQ 187
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK+VK W+ ++FQ
Sbjct: 163 IISAGNDKMVKAWNLNQFQ 181
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 260 SKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 311
S + +++M+IL SG + L S GH A C+ + E G +SG
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP-SETGNTFVSG 216
Query: 312 GNDKLVKVWDCSRFQGVQ 329
G DK VWD Q VQ
Sbjct: 217 GCDKKAMVWDMRSGQCVQ 234
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 26/218 (11%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L+GH C +D+ V+SS + I W + VT P T +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----MPCTWVM--- 110
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDV 127
Y SG + + S PL N N + V + AC+ D+
Sbjct: 111 ---ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 128 KII-----------DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEV-ISGGLDSKLVMWD 175
+I+ D+ L +S GH + + P + +SGG D K ++WD
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 176 FSKGRPNKIVNFGLPENNGNAGQCYNPAFVHAIAIPDA 213
G+ + F E++ N+ + Y A DA
Sbjct: 227 MRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDA 262
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 308 LISGGNDKLVKVWDCSRFQ 326
+IS GNDK VK W+ ++FQ
Sbjct: 169 IISAGNDKXVKAWNLNQFQ 187
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 305 GKYLISGGNDKLVKVWDCSRFQG 327
G++L SGGND LV VW + +G
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEG 264
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 305 GKYLISGGNDKLVKVWDCSRFQG 327
G++L SGGND LV VW + +G
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEG 275
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 301 FGERGKYLISGGNDKLVKVWD 321
F GK+L +G D+L+++WD
Sbjct: 131 FSPDGKFLATGAEDRLIRIWD 151
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDS-KL 171
KS+F+ C DD GD K+ + Q GH SS+ ++V+F P K + + G +S K+
Sbjct: 39 KSAFVRCLDD-GDSKVPPVVQFT-------GHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90
Query: 172 VMWDFS 177
++W ++
Sbjct: 91 IVWGWT 96
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQFIPWKPWEVISGGLDS-KL 171
KS+F+ C DD GD K+ + Q GH SS+ ++V+F P K + + G +S K+
Sbjct: 39 KSAFVRCLDD-GDSKVPPVVQFT-------GHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90
Query: 172 VMWDFS 177
++W ++
Sbjct: 91 IVWGWT 96
>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
Length = 521
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 187 FGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 228
+G NG QC+ A H I PDAD+ N + G
Sbjct: 257 YGTAAXNGKRAQCFGGAKNHXIIXPDADLDQAANALIGAGYG 298
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 305 GKYLISGGNDKLVKVWDCSRFQG 327
G++L SGGND LV VW + +G
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEG 184
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 288 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 329
GHT ASC+ S G + L +GG D V+ WD + +Q
Sbjct: 181 GHTDGASCIDISNDGTK---LWTGGLDNTVRSWDLREGRQLQ 219
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVM 173
K F C+D G++ + D+ L + + GH+ S + I ++ +GGLD+ +
Sbjct: 154 KVCFSCCSD--GNIAVWDLHNQTLVRQFQ-GHTDGASCID-ISNDGTKLWTGGLDNTVRS 209
Query: 174 WDFSKGR 180
WD +GR
Sbjct: 210 WDLREGR 216
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 48/224 (21%)
Query: 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNK 183
GD+K++D L + + H S + ++F P +IS D +L +W G P
Sbjct: 116 GDIKVLD-SNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRT 173
Query: 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243
++ H + D ++D+ + + A DG + + + I
Sbjct: 174 LIG-------------------HRATVTDIAIIDRGRNV-LSASLDGTIRLWECGTGTTI 213
Query: 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL----DYSVGGHTAAA------ 293
P G S + D ++ + S L Y + GH +
Sbjct: 214 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 273
Query: 294 ---------------SCVAFSMFGERGKYLISGGNDKLVKVWDC 322
SC + ++ G Y+ +G + ++ WD
Sbjct: 274 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 48/224 (21%)
Query: 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEVISGGLDSKLVMWDFSKG-RPNK 183
GD+K++D L + + H S + ++F P +IS D +L +W G P
Sbjct: 119 GDIKVLD-SNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRT 176
Query: 184 IVNFGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 243
++ H + D ++D+ + + A DG + + + I
Sbjct: 177 LIG-------------------HRATVTDIAIIDRGRNV-LSASLDGTIRLWECGTGTTI 216
Query: 244 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL----DYSVGGHTAAA------ 293
P G S + D ++ + S L Y + GH +
Sbjct: 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276
Query: 294 ---------------SCVAFSMFGERGKYLISGGNDKLVKVWDC 322
SC + ++ G Y+ +G + ++ WD
Sbjct: 277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,231,428
Number of Sequences: 62578
Number of extensions: 471861
Number of successful extensions: 1216
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 294
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)